AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1309090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309090 MtrunA17_Chr8g0335661 96.048 1088 41 2 1 1087 1 1087 0.0 2112
Msa1309090 MtrunA17_Chr4g0045841 29.091 165 95 5 905 1065 200 346 8.78e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309090 AT4G16970.1 53.992 526 215 8 555 1074 367 871 0.0 553

Find 266 sgRNAs with CRISPR-Local

Find 555 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTCAGATCTCAGTTTC+AGG 0.190414 8_4:+5539293 Msa1309090:CDS
CGGAATATGCTTGAGCGTTT+TGG 0.199917 8_4:+5536425 Msa1309090:CDS
AATACCTTAACGAAAATTTC+TGG 0.203122 8_4:-5533378 None:intergenic
CTCTTCACTGCCCCGCAATT+TGG 0.205385 8_4:-5539491 None:intergenic
AGGCTCTAACATCCAATAAA+AGG 0.206842 8_4:+5537773 Msa1309090:CDS
AGTGAAACGGAGTTGAATTT+TGG 0.214768 8_4:-5533179 None:intergenic
ATGGATTGCTTTGACTCATT+TGG 0.234727 8_4:+5534638 Msa1309090:CDS
CATTCATCTACGGTTGCTTT+GGG 0.247411 8_4:+5538165 Msa1309090:CDS
ATTAAATCAAACAATGATTT+CGG 0.255407 8_4:-5540393 None:intergenic
TTAAATCAAACAATGATTTC+GGG 0.265622 8_4:-5540392 None:intergenic
AACATTATCAAATTTGTTAC+AGG 0.266909 8_4:-5535236 None:intergenic
TTTGAGTCTCGGATTGTAAA+TGG 0.273704 8_4:+5534311 Msa1309090:CDS
TGGTTCCGGCGGAGACATTT+TGG 0.278740 8_4:-5532902 None:intergenic
GAGAAAGAGAAGTGTGGAAA+TGG 0.285230 8_4:-5532849 None:intergenic
ACATTCATCTACGGTTGCTT+TGG 0.289832 8_4:+5538164 Msa1309090:CDS
AGAAGATCCGACAGATGTTT+TGG 0.291136 8_4:+5534862 Msa1309090:CDS
TGGATTGCTTTGACTCATTT+GGG 0.302207 8_4:+5534639 Msa1309090:CDS
CTTTCTTCCTTTGAAAGGTA+TGG 0.302394 8_4:-5538001 None:intergenic
AGAAGAGCCAACAAAAGTTT+TGG 0.311700 8_4:+5535021 Msa1309090:CDS
AGCAAATTGACTTGCGTTTA+CGG 0.311768 8_4:-5533203 None:intergenic
CGAGAGAAAAGGAAGTTTCC+AGG 0.319522 8_4:-5537091 None:intergenic
TATTCCTTGGGTTTACTGTT+AGG 0.322982 8_4:-5540425 None:intergenic
TAAATTCGCAACAGCCTTAT+CGG 0.327666 8_4:-5537887 None:intergenic
GATATTTCTTTAGGTGGTTA+TGG 0.330159 8_4:+5535847 Msa1309090:intron
GGGCATGCATGTATTAGATT+TGG 0.331939 8_4:+5535054 Msa1309090:CDS
TTCCTCCAAGATTCTTGTCT+TGG 0.332691 8_4:-5537747 None:intergenic
GAGCTACTTTATTGTTAGAC+TGG 0.342320 8_4:-5535333 None:intergenic
CTTTGAAAGGTATGGGTTCT+CGG 0.344019 8_4:-5537993 None:intergenic
TAATTAACCAATCCTTCCTT+TGG 0.344266 8_4:-5534782 None:intergenic
GTCCTTCTTCTCAGAGGAAA+AGG 0.345324 8_4:+5538082 Msa1309090:CDS
TGCGGGGCAGTGAAGAGCTT+TGG 0.350904 8_4:+5539497 Msa1309090:CDS
GAAGATTTCAGAAGCTGCTT+TGG 0.357370 8_4:-5535370 None:intergenic
AAAAGAAATTGCCAAATTGC+GGG 0.357929 8_4:+5539480 Msa1309090:CDS
GCGAGTTGCGGTGGTGGTTC+CGG 0.362514 8_4:-5532916 None:intergenic
GAAGGTTTCAGAAGCTGCTT+TGG 0.362927 8_4:-5535145 None:intergenic
TAGAAATCCGTTACTGTTAA+CGG 0.364241 8_4:-5533103 None:intergenic
AATGATGATGTTGTTGGTAT+TGG 0.365035 8_4:+5534602 Msa1309090:CDS
TCACCAATTGCAAGCCGTTT+CGG 0.366080 8_4:-5533348 None:intergenic
GATTCAATTGGAGAATGTTC+AGG 0.367519 8_4:+5534362 Msa1309090:CDS
CATTACACAAAGATTGATCT+TGG 0.372033 8_4:-5534583 None:intergenic
ACGACTAATTGCAGAGAAAC+TGG 0.378110 8_4:+5540670 Msa1309090:three_prime_UTR
TATTGGATCAGAGGACAAAA+TGG 0.381016 8_4:+5534619 Msa1309090:CDS
CCTATACGTATTGATTCAAT+TGG 0.381191 8_4:+5534350 Msa1309090:CDS
CAGAACCGAATTTAAAATAC+AGG 0.382659 8_4:+5534390 Msa1309090:CDS
TTAACGGAGAGAGGAGAATC+AGG 0.386785 8_4:-5533087 None:intergenic
GCAAATTGACTTGCGTTTAC+GGG 0.391662 8_4:-5533202 None:intergenic
AGAAAGAGAAGTGTGGAAAT+GGG 0.393398 8_4:-5532848 None:intergenic
AGGGCCCTAAGGTTGATATT+TGG 0.397053 8_4:+5539313 Msa1309090:CDS
CTCTACTATACATGCTGATT+GGG 0.397374 8_4:+5539349 Msa1309090:CDS
GAAATCTTCTCGCATGTTGA+AGG 0.398448 8_4:+5535384 Msa1309090:CDS
CTTTGTGTGCAACTTGCACC+AGG 0.400113 8_4:-5540346 None:intergenic
TCAACACTAATCCTATTCCT+TGG 0.401290 8_4:-5540438 None:intergenic
TAACAGTAAACCCAAGGAAT+AGG 0.401457 8_4:+5540427 Msa1309090:CDS
ATAGAGGAAGAAGAAGGTTC+AGG 0.401686 8_4:+5535754 Msa1309090:CDS
CAACACTAATCCTATTCCTT+GGG 0.403336 8_4:-5540437 None:intergenic
TAAAGAGGAAAGAGGTTTGA+AGG 0.404692 8_4:+5534925 Msa1309090:CDS
GCGGGGCAGTGAAGAGCTTT+GGG 0.404708 8_4:+5539498 Msa1309090:CDS
AGGATGCTTCAACGAGGTCT+TGG 0.407582 8_4:+5540516 Msa1309090:CDS
CCAATTGAATCAATACGTAT+AGG 0.408213 8_4:-5534350 None:intergenic
AGATAACTTCATGACTTCTA+AGG 0.409633 8_4:+5535567 Msa1309090:CDS
AACTGTATTATAAAGTTTGA+AGG 0.410114 8_4:+5536535 Msa1309090:CDS
AGTGACTCGGTTAGAATTTG+AGG 0.413649 8_4:-5535211 None:intergenic
TTTCTTCCTTTGAAAGGTAT+GGG 0.416112 8_4:-5538000 None:intergenic
ACTAATGAAGAAACTCTCAT+TGG 0.417441 8_4:-5534477 None:intergenic
AAAAGGGTTACTGCTCCTTC+AGG 0.418092 8_4:+5538099 Msa1309090:CDS
GCAACGTGACGGACGAAATC+CGG 0.419646 8_4:-5533057 None:intergenic
TTCCTACGATCTGCCAGATC+TGG 0.424122 8_4:-5537802 None:intergenic
CAGTGAAGAGCTTTGGGAGG+TGG 0.427916 8_4:+5539504 Msa1309090:CDS
GCTCCTTCAGGCAAGGTAGA+TGG 0.430458 8_4:+5538111 Msa1309090:CDS
ACTCTACTATACATGCTGAT+TGG 0.431671 8_4:+5539348 Msa1309090:CDS
GGATCTTCTCCGCATGCTAC+AGG 0.436402 8_4:-5534848 None:intergenic
GATCCGAAACGGCTTGCAAT+TGG 0.437310 8_4:+5533345 Msa1309090:CDS
CCGCTTCTTCAACGCTTCGC+CGG 0.437967 8_4:+5533038 Msa1309090:CDS
CCCTACTGTGGATGGTGAAA+AGG 0.438053 8_4:+5534688 Msa1309090:CDS
AGACGGGAGAGGAATATTAC+TGG 0.438464 8_4:-5537707 None:intergenic
GAAACCTTCTCGCACATTGA+AGG 0.438686 8_4:+5535159 Msa1309090:CDS
CTAGCTGAAATCACAGGTTA+TGG 0.445380 8_4:-5540791 None:intergenic
AGTAATATTCCTCTCCCGTC+TGG 0.446156 8_4:+5537709 Msa1309090:CDS
TTCTCTCGAAAGCTAAAGAA+AGG 0.446434 8_4:+5537106 Msa1309090:CDS
GAGGAGAGAGAGGAGGTGCC+AGG 0.448642 8_4:-5532968 None:intergenic
CGTCGACGGGATGACCGATC+TGG 0.449155 8_4:-5532993 None:intergenic
ATTATAAAAGATTCAAAAGA+TGG 0.450944 8_4:-5535733 None:intergenic
TTGTGTAATGATGATGTTGT+TGG 0.453868 8_4:+5534596 Msa1309090:CDS
GCCGACCAAATATCAACCTT+AGG 0.456009 8_4:-5539318 None:intergenic
TATTCCGCTCATTATTTACA+TGG 0.456851 8_4:-5536409 None:intergenic
AAGGTTGATATTTGGTCGGC+TGG 0.458152 8_4:+5539321 Msa1309090:CDS
AAAAGGAGTAGGAGCGGAGC+GGG 0.458873 8_4:-5532804 None:intergenic
GTGGTCCAAGACAAGAATCT+TGG 0.458901 8_4:+5537742 Msa1309090:CDS
TTTGAAGGTTCTTTCAAAAG+TGG 0.458914 8_4:+5536550 Msa1309090:CDS
GTGCAATGAAATTTGAGTCT+CGG 0.462949 8_4:+5534300 Msa1309090:CDS
TATATACATCTATCAATGTA+TGG 0.464989 8_4:-5540648 None:intergenic
GATTGATCTTGGACACTAGT+TGG 0.465730 8_4:-5534572 None:intergenic
AACAAAGGGTTTCCGTGCCC+CGG 0.466552 8_4:+5538333 Msa1309090:CDS
TAAAAGGGAATTGCCAGATC+TGG 0.468469 8_4:+5537789 Msa1309090:CDS
GGCTCTTCTCCACATACTAC+AGG 0.475497 8_4:-5535007 None:intergenic
CTTAGTGCTAGTAACATCTC+TGG 0.475547 8_4:-5537950 None:intergenic
TCCAATTCCAAAACATCTGT+CGG 0.478188 8_4:-5534869 None:intergenic
AACATTATTGAAGGTGATGA+AGG 0.478543 8_4:+5535289 Msa1309090:CDS
AATGATCAGAACATTATTGA+AGG 0.479243 8_4:+5535280 Msa1309090:CDS
AAATTCGCAACAGCCTTATC+GGG 0.479709 8_4:-5537886 None:intergenic
TTGTTCAGATCTCAGTTTCA+GGG 0.479868 8_4:+5539294 Msa1309090:CDS
GGCTCTAACATCCAATAAAA+GGG 0.480027 8_4:+5537774 Msa1309090:CDS
GGTCCATGTGTTGGAACAAA+GGG 0.481545 8_4:+5538319 Msa1309090:CDS
GCAACCGTAGATGAATGTAT+AGG 0.482776 8_4:-5538159 None:intergenic
CACTCCTCGAAGACCAATCC+TGG 0.482873 8_4:+5532950 Msa1309090:CDS
AGATTCTTGTCTTGGACCAC+AGG 0.483607 8_4:-5537739 None:intergenic
AGCTCCTTTCTTCCTTTGAA+AGG 0.484570 8_4:-5538006 None:intergenic
CCGACCAAATATCAACCTTA+GGG 0.486366 8_4:-5539317 None:intergenic
CCACTGGAAAGGATGTTTCA+CGG 0.486521 8_4:-5539540 None:intergenic
ATTGGGAAAACTTCTTTCCC+TGG 0.486809 8_4:+5539366 Msa1309090:CDS
ATCTCAGTTTCAGGGCCCTA+AGG 0.486826 8_4:+5539302 Msa1309090:CDS
CAATACTGTTTGACCTGAAG+AGG 0.489477 8_4:+5540605 Msa1309090:three_prime_UTR
GGATCGGCGAGTTGCGGTGG+TGG 0.491104 8_4:-5532922 None:intergenic
AGGTTTGTGATTGGTGTGGA+TGG 0.491650 8_4:-5540833 None:intergenic
TCTTTAGCTTTCGAGAGAAA+AGG 0.491702 8_4:-5537102 None:intergenic
GATGGAAGATGTTGCTCAAA+GGG 0.492219 8_4:+5534820 Msa1309090:CDS
GAATGAGAGAGAAAGTGAAA+AGG 0.492572 8_4:-5532821 None:intergenic
GAGAGAGGAGGTGCCAGGAT+TGG 0.493624 8_4:-5532963 None:intergenic
AAGAGGTCCAAAGGAAGGAT+TGG 0.493708 8_4:+5534775 Msa1309090:CDS
CAAGAATCTTGGAGGAATCA+AGG 0.494455 8_4:+5537753 Msa1309090:CDS
TTTATAATAGAGGAAGAAGA+AGG 0.495240 8_4:+5535748 Msa1309090:CDS
TTACTGGATGCATCAAGCCT+TGG 0.496091 8_4:-5537691 None:intergenic
GAGGAAAGAGGTTTGAAGGA+AGG 0.496387 8_4:+5534929 Msa1309090:CDS
AGCACAAGGAGCAGATGGCT+CGG 0.498407 8_4:+5537915 Msa1309090:CDS
CTCTCTCTCCTCCTCCAGAT+CGG 0.499013 8_4:+5532979 Msa1309090:CDS
ATATGTGAGCTTCAGTGGTA+TGG 0.499209 8_4:+5536918 Msa1309090:CDS
AAACCTTCTCGCACATTGAA+GGG 0.499606 8_4:+5535160 Msa1309090:CDS
AAGCTGCTTTCGCCATGGCT+AGG 0.503048 8_4:+5533139 Msa1309090:CDS
GCACAAGGAGCAGATGGCTC+GGG 0.506807 8_4:+5537916 Msa1309090:CDS
TAAAAGAAATTGCCAAATTG+CGG 0.506980 8_4:+5539479 Msa1309090:CDS
CGTTGAAGCTGCTTTCGCCA+TGG 0.511259 8_4:+5533134 Msa1309090:CDS
TTGCGTTTACGGGAGTGAAA+CGG 0.511839 8_4:-5533192 None:intergenic
CATACCTTTCAAAGGAAGAA+AGG 0.513266 8_4:+5538002 Msa1309090:CDS
AAGAAGGGATTGAGAGAAGC+GGG 0.515422 8_4:+5532759 None:intergenic
GGGACTTTATCAACAAACTC+TGG 0.518146 8_4:-5540372 None:intergenic
TCCTTCTTCTCAGAGGAAAA+GGG 0.519310 8_4:+5538083 Msa1309090:CDS
TTAGTGTTGAAGATGTTCTC+AGG 0.521851 8_4:+5540451 Msa1309090:CDS
ATGGTCAAAGGAGAGATATC+TGG 0.525173 8_4:+5534440 Msa1309090:CDS
AGCTGCTTTGGATTTGAAGA+GGG 0.525993 8_4:-5535358 None:intergenic
TATGTGAGCTTCAGTGGTAT+GGG 0.526504 8_4:+5536919 Msa1309090:CDS
TGAAATTCGTAAGCATATGA+AGG 0.528442 8_4:+5537831 Msa1309090:CDS
TATTGAAGGTGATGAAGGTA+AGG 0.529301 8_4:+5535294 Msa1309090:CDS
GTTCACAGAGATGTTAAACC+TGG 0.530796 8_4:+5537073 Msa1309090:CDS
AGCTACTTTATTGTTAGACT+GGG 0.530901 8_4:-5535332 None:intergenic
TGGTCTTCGAGGAGTGGAGT+TGG 0.531805 8_4:-5532943 None:intergenic
CATGGCGAAAGCAGCTTCAA+CGG 0.534287 8_4:-5533133 None:intergenic
AAACCCTTTGTTCCAACACA+TGG 0.534397 8_4:-5538322 None:intergenic
CATCAGTTGTTCTATGAGCA+CGG 0.536001 8_4:-5535879 None:intergenic
AGAAGAGAAAAGAGGTCCAA+AGG 0.536493 8_4:+5534766 Msa1309090:CDS
CGTGCTCATAGAACAACTGA+TGG 0.537080 8_4:+5535880 Msa1309090:CDS
TGGCAAGGTTGAAGTCGATA+AGG 0.538478 8_4:-5537132 None:intergenic
GAGAAAAGAGGTCCAAAGGA+AGG 0.538859 8_4:+5534770 Msa1309090:CDS
ATAAATAAAGAAGAGAAAAG+AGG 0.539398 8_4:+5534758 Msa1309090:CDS
TTGATATATGTGAGCTTCAG+TGG 0.539584 8_4:+5536913 Msa1309090:CDS
GAGAGAAAGTGAAAAGGAGT+AGG 0.539666 8_4:-5532815 None:intergenic
TGTTTCACGGTCATGCAGCT+TGG 0.540699 8_4:-5539527 None:intergenic
AACATAACCCCTACTGTGGA+TGG 0.541969 8_4:+5534680 Msa1309090:CDS
CCCTAAGGTTGATATTTGGT+CGG 0.545440 8_4:+5539317 Msa1309090:CDS
ATGAAGGCAAAAGCGGATGC+TGG 0.545882 8_4:+5537847 Msa1309090:CDS
CGATCTGGAGGAGGAGAGAG+AGG 0.549243 8_4:-5532978 None:intergenic
CCGGCGAAGCGTTGAAGAAG+CGG 0.552425 8_4:-5533038 None:intergenic
TTCGAGGAGTGGAGTTGGAT+CGG 0.552545 8_4:-5532938 None:intergenic
AAGCTGCTTTGGATTTGAAG+AGG 0.554463 8_4:-5535134 None:intergenic
GTAGATGAATGTATAGGCAT+TGG 0.557803 8_4:-5538153 None:intergenic
GGGTCCATGTGTTGGAACAA+AGG 0.561472 8_4:+5538318 Msa1309090:CDS
CGTTGAAGAAGCGGCAACGA+AGG 0.561497 8_4:-5533029 None:intergenic
GAGAGAGAGAAAGAGAAGTG+TGG 0.561663 8_4:-5532855 None:intergenic
AGATGGAAGATGTTGCTCAA+AGG 0.563134 8_4:+5534819 Msa1309090:CDS
AAGAATTTACCTCCGGGGCA+CGG 0.563272 8_4:-5538345 None:intergenic
AAGCTGCTTTGGATTTGAAG+AGG 0.565073 8_4:-5535359 None:intergenic
GATTCTTGTCTTGGACCACA+GGG 0.566206 8_4:-5537738 None:intergenic
CCTCTCTCCGTTAACAGTAA+CGG 0.568053 8_4:+5533096 Msa1309090:CDS
GGGGAAGAACCAGACGGGAG+AGG 0.568805 8_4:-5537718 None:intergenic
CGTAGAGCACAAGGAGCAGA+TGG 0.571518 8_4:+5537910 Msa1309090:CDS
TATGGGTTCTCGGAGCCTAT+CGG 0.573323 8_4:-5537983 None:intergenic
ATATCAGTTTCATGAACTGT+AGG 0.573464 8_4:+5540572 Msa1309090:exon
CTAAGACTGCTTCTGCCGAT+AGG 0.573679 8_4:+5537968 Msa1309090:CDS
TTATGAGAATGATAGAGAGA+TGG 0.574463 8_4:+5534802 Msa1309090:CDS
CCGTTACTGTTAACGGAGAG+AGG 0.575451 8_4:-5533096 None:intergenic
AAAAGAGAGGGTCCATGTGT+TGG 0.577815 8_4:+5538310 Msa1309090:CDS
GTCCAAGACAAGAATCTTGG+AGG 0.578441 8_4:+5537745 Msa1309090:CDS
CGGGATGACCGATCTGGAGG+AGG 0.579997 8_4:-5532987 None:intergenic
TCTTCTCGCATGTTGAAGGA+TGG 0.580399 8_4:+5535388 Msa1309090:CDS
AATGGAATTTACCACTGGAA+AGG 0.581118 8_4:-5539551 None:intergenic
TTGGGGTTATTAAGAAGCAA+AGG 0.581215 8_4:+5538183 Msa1309090:CDS
TTTGTTACAGGCTAGTGACT+CGG 0.581585 8_4:-5535224 None:intergenic
CTGCCATCTACCTTGCCTGA+AGG 0.582954 8_4:-5538114 None:intergenic
TATCGACTTCAACCTTGCCA+TGG 0.583985 8_4:+5537135 Msa1309090:CDS
CCGATCCAAAATGTCTCCGC+CGG 0.584581 8_4:+5532897 Msa1309090:exon
AACCTTCTCGCACATTGAAG+GGG 0.587830 8_4:+5535161 Msa1309090:CDS
CAGGATTGGTCTTCGAGGAG+TGG 0.587880 8_4:-5532949 None:intergenic
GTTGGATCGGCGAGTTGCGG+TGG 0.588249 8_4:-5532925 None:intergenic
CGAGGGTCTAGATAGATTCG+TGG 0.588972 8_4:+5534520 Msa1309090:CDS
TGGTGGAGCAAGATTAGCAA+AGG 0.589902 8_4:-5534552 None:intergenic
TGTCATATGATTGCAAGTAT+CGG 0.590214 8_4:-5540317 None:intergenic
TGATCTTGGACACTAGTTGG+TGG 0.590604 8_4:-5534569 None:intergenic
GCGAAAGCAGCTTCAACGGA+AGG 0.591262 8_4:-5533129 None:intergenic
GAAAAGGAGTAGGAGCGGAG+CGG 0.592581 8_4:-5532805 None:intergenic
CGAGAACCCATACCTTTCAA+AGG 0.593233 8_4:+5537994 Msa1309090:CDS
GCTAGTAACATCTCTGGCAG+AGG 0.593503 8_4:-5537944 None:intergenic
GGTGCCAGGATTGGTCTTCG+AGG 0.593716 8_4:-5532954 None:intergenic
CTTCAGGCAAGGTAGATGGC+AGG 0.594037 8_4:+5538115 Msa1309090:CDS
AATACTGTTTGACCTGAAGA+GGG 0.594313 8_4:+5540606 Msa1309090:three_prime_UTR
CAGGTGGAAGAGATCCGAAA+CGG 0.595991 8_4:+5533334 Msa1309090:intron
GGTGGAGCAAGATTAGCAAA+GGG 0.597178 8_4:-5534551 None:intergenic
AATGCCTATACATTCATCTA+CGG 0.599137 8_4:+5538155 Msa1309090:CDS
AGTCTCGGATTGTAAATGGT+GGG 0.602244 8_4:+5534315 Msa1309090:CDS
TCAATTTGCTCAATCACTCA+AGG 0.603232 8_4:+5533216 Msa1309090:CDS
GTTGAAGAAGCGGCAACGAA+GGG 0.603458 8_4:-5533028 None:intergenic
GGTCAGGTTTGTGATTGGTG+TGG 0.604438 8_4:-5540837 None:intergenic
CCACAGGGGAAGAACCAGAC+GGG 0.606761 8_4:-5537723 None:intergenic
GAAGAAGGGATTGAGAGAAG+CGG 0.608261 8_4:+5532758 None:intergenic
TTGCAACTAGCTGAAATCAC+AGG 0.608961 8_4:-5540797 None:intergenic
ACCTTCTCGCACATTGAAGG+GGG 0.609586 8_4:+5535162 Msa1309090:CDS
GGCATAACAAGCATGGTCAA+AGG 0.610521 8_4:+5534428 Msa1309090:CDS
AAAGTGAAAAGGAGTAGGAG+CGG 0.612456 8_4:-5532810 None:intergenic
GAGTCTCGGATTGTAAATGG+TGG 0.614229 8_4:+5534314 Msa1309090:CDS
TGCCAGATCTGGCAGATCGT+AGG 0.614643 8_4:+5537800 Msa1309090:CDS
GCGAATTTACGTAGAGCACA+AGG 0.616884 8_4:+5537901 Msa1309090:CDS
CCCGTCTGGTTCTTCCCCTG+TGG 0.618731 8_4:+5537723 Msa1309090:CDS
GGGCAGTGAAGAGCTTTGGG+AGG 0.619718 8_4:+5539501 Msa1309090:CDS
ATTCATCTACGGTTGCTTTG+GGG 0.621492 8_4:+5538166 Msa1309090:CDS
AGTTGCGGTGGTGGTTCCGG+CGG 0.621987 8_4:-5532913 None:intergenic
AGGATGAATCCTGTAGTATG+TGG 0.629143 8_4:+5534998 Msa1309090:CDS
TACAGGGAAGCTGATAATGA+CGG 0.629467 8_4:+5534407 Msa1309090:CDS
TAAGCATATGAAGGCAAAAG+CGG 0.635350 8_4:+5537840 Msa1309090:CDS
GGTTACTGCTCCTTCAGGCA+AGG 0.636110 8_4:+5538104 Msa1309090:CDS
CGACGGGATGACCGATCTGG+AGG 0.637015 8_4:-5532990 None:intergenic
GGAGTTGGATCGGCGAGTTG+CGG 0.637588 8_4:-5532928 None:intergenic
TGAAAAGTCCTTCTTCTCAG+AGG 0.638414 8_4:+5538076 Msa1309090:CDS
GACGGAAAACATAAAAGAGA+GGG 0.640908 8_4:+5538298 Msa1309090:CDS
GAGGGTCTAGATAGATTCGT+GGG 0.642595 8_4:+5534521 Msa1309090:CDS
GCTGAAATCACAGGTTATGG+TGG 0.643483 8_4:-5540788 None:intergenic
ACTTGCGTGCTTGCACAAAG+AGG 0.643572 8_4:+5536959 Msa1309090:CDS
AAGTGACTCGAGGAAGCTCG+AGG 0.646512 8_4:+5534502 Msa1309090:CDS
TGTTGTTGGTATTGGATCAG+AGG 0.649031 8_4:+5534610 Msa1309090:CDS
TTTACTGTTCTGGTTCGCCA+GGG 0.650022 8_4:-5539383 None:intergenic
AAAGAAATTGCCAAATTGCG+GGG 0.650726 8_4:+5539481 Msa1309090:CDS
AAAACCATGTAAATAATGAG+CGG 0.651500 8_4:+5536405 Msa1309090:CDS
TAATGACGGCATAACAAGCA+TGG 0.654148 8_4:+5534421 Msa1309090:CDS
GAAGCAACCTAACCATGGCA+AGG 0.654219 8_4:-5537147 None:intergenic
TGAAGGTAAGGATCAGAACA+TGG 0.659752 8_4:+5535306 Msa1309090:CDS
ACTCAGGTAAATCAAAACCA+AGG 0.660436 8_4:+5537674 Msa1309090:intron
AGTGCCTAACAGTAAACCCA+AGG 0.662467 8_4:+5540421 Msa1309090:CDS
AGTGACTCGAGGAAGCTCGA+GGG 0.663036 8_4:+5534503 Msa1309090:CDS
ACAAAACATAACCCCTACTG+TGG 0.663994 8_4:+5534676 Msa1309090:CDS
GGACGGAAAACATAAAAGAG+AGG 0.664528 8_4:+5538297 Msa1309090:CDS
CAGGAAGTGAAGCAACGTGA+CGG 0.666927 8_4:-5533068 None:intergenic
AGAACCGAATTTAAAATACA+GGG 0.667459 8_4:+5534391 Msa1309090:CDS
CTGGCACATAATGTAAACTG+TGG 0.669112 8_4:+5540689 Msa1309090:three_prime_UTR
TTGAAGCAGAAGTACAACAT+CGG 0.674249 8_4:+5537247 Msa1309090:CDS
AATCATATGACATAGAAACC+TGG 0.675049 8_4:+5540328 Msa1309090:CDS
TCTGGAGGAGGAGAGAGAGG+AGG 0.676330 8_4:-5532975 None:intergenic
TCATTAGTGAAAGTGACTCG+AGG 0.676728 8_4:+5534492 Msa1309090:CDS
ATGAGATCATGAGAAAGACA+AGG 0.685426 8_4:+5540496 Msa1309090:CDS
AAAGGGTTTCCGTGCCCCGG+AGG 0.686493 8_4:+5538336 Msa1309090:CDS
ACCACAGGGGAAGAACCAGA+CGG 0.689092 8_4:-5537724 None:intergenic
TCTCATGATCTCATTACACG+AGG 0.690799 8_4:-5540487 None:intergenic
CCGTGAAACATCCTTTCCAG+TGG 0.691680 8_4:+5539540 Msa1309090:CDS
GATCGGTCATCCCGTCGACG+CGG 0.695572 8_4:+5532996 Msa1309090:CDS
CCTTCTCGCACATTGAAGGG+GGG 0.716670 8_4:+5535163 Msa1309090:CDS
AGATGGAAGATGTTGCTCTG+AGG 0.736893 8_4:+5534978 Msa1309090:CDS
TGTTGAGCATGAGAGACCTG+AGG 0.737768 8_4:+5536600 Msa1309090:CDS
ATTCTTGTCTTGGACCACAG+GGG 0.743915 8_4:-5537737 None:intergenic
AAGACAAGGATGCTTCAACG+AGG 0.753636 8_4:+5540510 Msa1309090:CDS
ATTGCATAGAATTCTGCACG+AGG 0.772903 8_4:-5538035 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAATTTTAATAGTGTTT+AGG + chr8_4:5533469-5533488 Msa1309090:intron 10.0%
!!! TAAATTCCATTTTTTTTTTT+TGG + chr8_4:5539563-5539582 Msa1309090:intron 10.0%
!!! TTGATAATTTTAGATTTTGT+AGG + chr8_4:5533690-5533709 Msa1309090:intron 15.0%
!!! TTTATTTTTCTTCAAAAGTT+TGG + chr8_4:5534140-5534159 Msa1309090:intron 15.0%
!! ATCTATTGAAAAATATAAAG+AGG + chr8_4:5534910-5534929 Msa1309090:CDS 15.0%
!!! TTACTTTGATCAATTTTTTT+TGG - chr8_4:5535262-5535281 None:intergenic 15.0%
!! ATTATAAAAGATTCAAAAGA+TGG - chr8_4:5535736-5535755 None:intergenic 15.0%
!!! TTTTGAATCTTTTATAATAG+AGG + chr8_4:5535738-5535757 Msa1309090:CDS 15.0%
!!! TTATATTTTAAGTAGGAAAA+AGG - chr8_4:5536081-5536100 None:intergenic 15.0%
!! ATCGTAGTTAAAAAAAATAT+AGG - chr8_4:5536470-5536489 None:intergenic 15.0%
!! GAAAAAAAATTGATATTTGT+GGG + chr8_4:5536806-5536825 Msa1309090:intron 15.0%
!! GTCAAAAAATAGATAATATT+TGG - chr8_4:5538431-5538450 None:intergenic 15.0%
!!! TCATATATTGATTTCTTTTT+CGG - chr8_4:5538583-5538602 None:intergenic 15.0%
!!! TGGTCAAATATTTAATTTAT+TGG + chr8_4:5538935-5538954 Msa1309090:intron 15.0%
!!! TTTGAAATATTACAAATGAT+AGG + chr8_4:5539044-5539063 Msa1309090:intron 15.0%
!! AGTATTATCTTTCTATAAAT+TGG + chr8_4:5539069-5539088 Msa1309090:intron 15.0%
!!! TTTTCAATAATTTTAAGTCA+CGG + chr8_4:5539251-5539270 Msa1309090:intron 15.0%
!! AAAAAGTAATAAGGATTAAT+AGG - chr8_4:5539603-5539622 None:intergenic 15.0%
!!! TTAATCCTTATTACTTTTTT+TGG + chr8_4:5539604-5539623 Msa1309090:intron 15.0%
!!! TTTTCATGCTATTTAATTAT+AGG - chr8_4:5539656-5539675 None:intergenic 15.0%
!! AATTAAATAGCATGAAAAAA+TGG + chr8_4:5539658-5539677 Msa1309090:intron 15.0%
!!! AATTATGATTTTAATTGTTG+TGG + chr8_4:5540186-5540205 Msa1309090:intron 15.0%
!! ATTAAATCAAACAATGATTT+CGG - chr8_4:5540396-5540415 None:intergenic 15.0%
!!! TAGTATTGTTATCGTTATTT+TGG + chr8_4:5534026-5534045 Msa1309090:intron 20.0%
!! ATAAATAAAGAAGAGAAAAG+AGG + chr8_4:5534758-5534777 Msa1309090:CDS 20.0%
!!! AAAAGTTTTGGAATTGAAAA+AGG + chr8_4:5535033-5535052 Msa1309090:CDS 20.0%
!!! AAAGTTTTGGAATTGAAAAA+GGG + chr8_4:5535034-5535053 Msa1309090:CDS 20.0%
!!! AACATTATCAAATTTGTTAC+AGG - chr8_4:5535239-5535258 None:intergenic 20.0%
!!! TAATGTTCTGTAAATCATTT+TGG + chr8_4:5535630-5535649 Msa1309090:intron 20.0%
!! ATTCAACAAAATAACCAAAA+TGG - chr8_4:5535692-5535711 None:intergenic 20.0%
!! ACATGTTTAACATAAAAGAT+AGG - chr8_4:5535936-5535955 None:intergenic 20.0%
!! TCCTACTTAAAATATAAAAC+TGG + chr8_4:5536084-5536103 Msa1309090:intron 20.0%
!!! TCCAGTTTTATATTTTAAGT+AGG - chr8_4:5536088-5536107 None:intergenic 20.0%
!! AACTGTATTATAAAGTTTGA+AGG + chr8_4:5536535-5536554 Msa1309090:CDS 20.0%
!!! TGTGAAAAAATAACTGTTTT+TGG + chr8_4:5536661-5536680 Msa1309090:intron 20.0%
!! TAATATTAAAAGAGGTTGAA+AGG - chr8_4:5536701-5536720 None:intergenic 20.0%
!! AATCAGCTTAATATTAAAAG+AGG - chr8_4:5536709-5536728 None:intergenic 20.0%
!! GGAAAAAAAATTGATATTTG+TGG + chr8_4:5536805-5536824 Msa1309090:intron 20.0%
!! GATTATTTCCAAATATAATC+TGG + chr8_4:5537198-5537217 Msa1309090:intron 20.0%
!!! AAATGTGTTTCTTTTTTTCT+GGG - chr8_4:5537347-5537366 None:intergenic 20.0%
!!! AAAATGTGTTTCTTTTTTTC+TGG - chr8_4:5537348-5537367 None:intergenic 20.0%
!!! TCTATCCATTATTTTAGATA+TGG + chr8_4:5538678-5538697 Msa1309090:intron 20.0%
!!! TTTTCTTTGAATGACAATAA+AGG - chr8_4:5539108-5539127 None:intergenic 20.0%
!! TGTAACCAAAAAAAGTAATA+AGG - chr8_4:5539612-5539631 None:intergenic 20.0%
!! TAATTATAGGTTCTCAAATA+AGG - chr8_4:5539643-5539662 None:intergenic 20.0%
!! TATTAAGTTTCACTCAAATA+TGG + chr8_4:5539725-5539744 Msa1309090:intron 20.0%
!! ATTCTATTATTGTTTGAAGA+TGG + chr8_4:5540102-5540121 Msa1309090:intron 20.0%
!! TTAAATCAAACAATGATTTC+GGG - chr8_4:5540395-5540414 None:intergenic 20.0%
!! TATATACATCTATCAATGTA+TGG - chr8_4:5540651-5540670 None:intergenic 20.0%
!!! TAGAACTCAACATTTTTTTT+AGG + chr8_4:5540718-5540737 Msa1309090:three_prime_UTR 20.0%
!!! ATTTTTTTTTAAGAACTTGC+AGG + chr8_4:5540764-5540783 Msa1309090:three_prime_UTR 20.0%
!! TGTTAATTTTGTGTGTGTTT+TGG + chr8_4:5533282-5533301 Msa1309090:intron 25.0%
!!! GGTTTATTGATTTGAGATTT+TGG + chr8_4:5533306-5533325 Msa1309090:intron 25.0%
! AATACCTTAACGAAAATTTC+TGG - chr8_4:5533381-5533400 None:intergenic 25.0%
!! TTCTTACTTATTCACTCTTT+TGG + chr8_4:5533399-5533418 Msa1309090:intron 25.0%
!! TTTAGGTACATATTTTGTAG+TGG + chr8_4:5533486-5533505 Msa1309090:intron 25.0%
! ATTCTTAACACTGTTTGATT+GGG + chr8_4:5533954-5533973 Msa1309090:intron 25.0%
! AAAAAATGCAACCATTTAGT+TGG + chr8_4:5534067-5534086 Msa1309090:intron 25.0%
!! AGAACCGAATTTAAAATACA+GGG + chr8_4:5534391-5534410 Msa1309090:CDS 25.0%
! GAAAAATATAAAGAGGAAAG+AGG + chr8_4:5534917-5534936 Msa1309090:CDS 25.0%
!! TTCAATTCCAAAACTTTTGT+TGG - chr8_4:5535031-5535050 None:intergenic 25.0%
! AATGATCAGAACATTATTGA+AGG + chr8_4:5535280-5535299 Msa1309090:CDS 25.0%
! GTTCCAAAAAAAATTGATCA+AGG + chr8_4:5535256-5535275 Msa1309090:CDS 25.0%
!!! TGACCTTGATCAATTTTTTT+TGG - chr8_4:5535487-5535506 None:intergenic 25.0%
!!! TTTGGTTATTTTGTTGAATC+AGG + chr8_4:5535693-5535712 Msa1309090:intron 25.0%
! TTTATAATAGAGGAAGAAGA+AGG + chr8_4:5535748-5535767 Msa1309090:CDS 25.0%
!!! ATATCAACGCAATTTTAGTA+GGG - chr8_4:5535832-5535851 None:intergenic 25.0%
!!! AATATCAACGCAATTTTAGT+AGG - chr8_4:5535833-5535852 None:intergenic 25.0%
!! AATTGCGTTGATATTTCTTT+AGG + chr8_4:5535838-5535857 Msa1309090:intron 25.0%
! TTCCAATAGAGTACAAATAA+AGG - chr8_4:5536015-5536034 None:intergenic 25.0%
! TACAATAGATTGTGAAATAG+AGG + chr8_4:5536220-5536239 Msa1309090:intron 25.0%
! TTGCAGATAATAGAAAATAG+TGG - chr8_4:5536291-5536310 None:intergenic 25.0%
! ATTTGTACATGTAATTTGAC+AGG + chr8_4:5536362-5536381 Msa1309090:intron 25.0%
! AAAACCATGTAAATAATGAG+CGG + chr8_4:5536405-5536424 Msa1309090:CDS 25.0%
!!! CTTTAACTTTTCATGATTCA+GGG + chr8_4:5536507-5536526 Msa1309090:intron 25.0%
!!! TTTAACTTTTCATGATTCAG+GGG + chr8_4:5536508-5536527 Msa1309090:intron 25.0%
! AAATTGATATTTGTGGGAAA+TGG + chr8_4:5536812-5536831 Msa1309090:intron 25.0%
! AACTACATTACAGTAAAGAA+TGG - chr8_4:5536851-5536870 None:intergenic 25.0%
! AAGTTCAAACTCTTATATGT+AGG + chr8_4:5537045-5537064 Msa1309090:intron 25.0%
! AGTTCAAACTCTTATATGTA+GGG + chr8_4:5537046-5537065 Msa1309090:intron 25.0%
! ACAATACACCAGATTATATT+TGG - chr8_4:5537209-5537228 None:intergenic 25.0%
!! GTATTGTTGTATTTCTTTTC+AGG + chr8_4:5537222-5537241 Msa1309090:intron 25.0%
! CTTAGTTGTATATTAATCTC+AGG + chr8_4:5537303-5537322 Msa1309090:intron 25.0%
! ACAAATTAACTGATGAAACT+AGG - chr8_4:5537648-5537667 None:intergenic 25.0%
!!! GTTAATTTGTTCATTTACTC+AGG + chr8_4:5537658-5537677 Msa1309090:intron 25.0%
! TTAGTAAGGTACAATCTTAA+AGG - chr8_4:5538257-5538276 None:intergenic 25.0%
! GTTAGCTATTTATCTATCTA+TGG + chr8_4:5538607-5538626 Msa1309090:intron 25.0%
!! CTGAACCATATCTAAAATAA+TGG - chr8_4:5538686-5538705 None:intergenic 25.0%
!!! CATTATTTTAGATATGGTTC+AGG + chr8_4:5538684-5538703 Msa1309090:intron 25.0%
! AAACTTCATAAAAGCTAAAC+TGG + chr8_4:5538984-5539003 Msa1309090:intron 25.0%
!!! TCTTTCTATAAATTGGTCTT+TGG + chr8_4:5539076-5539095 Msa1309090:intron 25.0%
!! CTTTAAACGATACATTTTGA+AGG - chr8_4:5539180-5539199 None:intergenic 25.0%
! TAAAGACATCCATTAATTGT+AGG - chr8_4:5539230-5539249 None:intergenic 25.0%
! TAAAAGAAATTGCCAAATTG+CGG + chr8_4:5539479-5539498 Msa1309090:CDS 25.0%
! AAAAAAATGGAATTTACCAC+TGG - chr8_4:5539559-5539578 None:intergenic 25.0%
! GAGTTGCCAAAAAAAAAAAA+TGG - chr8_4:5539572-5539591 None:intergenic 25.0%
!!! TTTTTTTTTTTTGGCAACTC+TGG + chr8_4:5539572-5539591 Msa1309090:intron 25.0%
! GTTCTATCATAAACCATATT+TGG - chr8_4:5539753-5539772 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr8_4:5539757-5539776 Msa1309090:intron 25.0%
! AACTTAAAATGGTTATCCAA+GGG - chr8_4:5539950-5539969 None:intergenic 25.0%
! AAACTTAAAATGGTTATCCA+AGG - chr8_4:5539951-5539970 None:intergenic 25.0%
!! TTAATTTTGTGATTATGAGC+TGG - chr8_4:5539979-5539998 None:intergenic 25.0%
!! ACTAGTTTACTAGAAAAAGA+TGG + chr8_4:5540068-5540087 Msa1309090:intron 25.0%
! ACAATAATAGAATCAACCAA+GGG - chr8_4:5540095-5540114 None:intergenic 25.0%
! AACAATAATAGAATCAACCA+AGG - chr8_4:5540096-5540115 None:intergenic 25.0%
!! TTCTATTGTTGATTGCAAAT+GGG - chr8_4:5540167-5540186 None:intergenic 25.0%
!! TTTCTATTGTTGATTGCAAA+TGG - chr8_4:5540168-5540187 None:intergenic 25.0%
TAGAAATCCGTTACTGTTAA+CGG - chr8_4:5533106-5533125 None:intergenic 30.0%
!! TAATTTTGTGTGTGTTTTGG+TGG + chr8_4:5533285-5533304 Msa1309090:intron 30.0%
!! ATTTGAGATTTTGGTGAAAC+AGG + chr8_4:5533315-5533334 Msa1309090:intron 30.0%
! AGTTCCAGAAATTTTCGTTA+AGG + chr8_4:5533374-5533393 Msa1309090:CDS 30.0%
TATTATGCACGTAGAATCAT+AGG + chr8_4:5533726-5533745 Msa1309090:intron 30.0%
ACTAAATCGCATACCAATAA+TGG - chr8_4:5533843-5533862 None:intergenic 30.0%
GATTCTTAACACTGTTTGAT+TGG + chr8_4:5533953-5533972 Msa1309090:intron 30.0%
GTTGTATTTCATGCTGAATT+TGG + chr8_4:5534198-5534217 Msa1309090:intron 30.0%
CCAATTGAATCAATACGTAT+AGG - chr8_4:5534353-5534372 None:intergenic 30.0%
!! CCTATACGTATTGATTCAAT+TGG + chr8_4:5534350-5534369 Msa1309090:CDS 30.0%
! CAGAACCGAATTTAAAATAC+AGG + chr8_4:5534390-5534409 Msa1309090:CDS 30.0%
!! GCTTCCCTGTATTTTAAATT+CGG - chr8_4:5534398-5534417 None:intergenic 30.0%
ACTAATGAAGAAACTCTCAT+TGG - chr8_4:5534480-5534499 None:intergenic 30.0%
CATTACACAAAGATTGATCT+TGG - chr8_4:5534586-5534605 None:intergenic 30.0%
! TTGTGTAATGATGATGTTGT+TGG + chr8_4:5534596-5534615 Msa1309090:CDS 30.0%
! AATGATGATGTTGTTGGTAT+TGG + chr8_4:5534602-5534621 Msa1309090:CDS 30.0%
TAATTAACCAATCCTTCCTT+TGG - chr8_4:5534785-5534804 None:intergenic 30.0%
TTATGAGAATGATAGAGAGA+TGG + chr8_4:5534802-5534821 Msa1309090:CDS 30.0%
!!! AGATGTTTTGGAATTGGAAA+AGG + chr8_4:5534874-5534893 Msa1309090:CDS 30.0%
!!! GATGTTTTGGAATTGGAAAA+GGG + chr8_4:5534875-5534894 Msa1309090:CDS 30.0%
CTATGACAAAAATGAAGAGA+TGG + chr8_4:5534961-5534980 Msa1309090:CDS 30.0%
AAACAAGACAGTGAGAAAAA+TGG + chr8_4:5535081-5535100 Msa1309090:CDS 30.0%
!! AGCTATTTTATTTGTAGACC+GGG - chr8_4:5535110-5535129 None:intergenic 30.0%
!! GAGCTATTTTATTTGTAGAC+CGG - chr8_4:5535111-5535130 None:intergenic 30.0%
AACATTATTGAAGGTGATGA+AGG + chr8_4:5535289-5535308 Msa1309090:CDS 30.0%
! AGCTACTTTATTGTTAGACT+GGG - chr8_4:5535335-5535354 None:intergenic 30.0%
AGATAACTTCATGACTTCTA+AGG + chr8_4:5535567-5535586 Msa1309090:CDS 30.0%
TCACATGTATAATACATCTC+AGG - chr8_4:5535663-5535682 None:intergenic 30.0%
! ACATGTGATGTTATCCATTT+TGG + chr8_4:5535675-5535694 Msa1309090:intron 30.0%
!!! AGGGATTTGTTTTATCAGTT+TGG - chr8_4:5535813-5535832 None:intergenic 30.0%
GATATTTCTTTAGGTGGTTA+TGG + chr8_4:5535847-5535866 Msa1309090:intron 30.0%
! GTCCTTTATTTGTACTCTAT+TGG + chr8_4:5536010-5536029 Msa1309090:intron 30.0%
! GTAACAGTGTTGTTAAATAG+TGG + chr8_4:5536123-5536142 Msa1309090:intron 30.0%
TTGTTAAATAGTGGCTATAG+CGG + chr8_4:5536132-5536151 Msa1309090:intron 30.0%
TTGTACTAAATAGCGTATCA+AGG - chr8_4:5536205-5536224 None:intergenic 30.0%
ATCTGCAATTGACAACATTT+CGG + chr8_4:5536303-5536322 Msa1309090:intron 30.0%
!! TTTTTATGAGCATTGCTATG+AGG - chr8_4:5536389-5536408 None:intergenic 30.0%
TATTCCGCTCATTATTTACA+TGG - chr8_4:5536412-5536431 None:intergenic 30.0%
ATGAAAAGTTAAAGGACAAC+AGG - chr8_4:5536501-5536520 None:intergenic 30.0%
CCTGAATCATGAAAAGTTAA+AGG - chr8_4:5536509-5536528 None:intergenic 30.0%
!! CCTTTAACTTTTCATGATTC+AGG + chr8_4:5536506-5536525 Msa1309090:intron 30.0%
TTTGAAGGTTCTTTCAAAAG+TGG + chr8_4:5536550-5536569 Msa1309090:CDS 30.0%
!!! ACAGTTATTTTTTCACACGA+AGG - chr8_4:5536658-5536677 None:intergenic 30.0%
!!! GCTTCTCAATTTTTAGTTTC+TGG + chr8_4:5536784-5536803 Msa1309090:intron 30.0%
ATGAAAATACCACAATGTGT+AGG + chr8_4:5536875-5536894 Msa1309090:intron 30.0%
! TTTTCAAAACCTACACATTG+TGG - chr8_4:5536887-5536906 None:intergenic 30.0%
AGTAACAGAGAATAAGCAAA+GGG - chr8_4:5536992-5537011 None:intergenic 30.0%
AAGTAACAGAGAATAAGCAA+AGG - chr8_4:5536993-5537012 None:intergenic 30.0%
CCAAATAGGTTAGAATTATG+AGG - chr8_4:5537280-5537299 None:intergenic 30.0%
CCTCATAATTCTAACCTATT+TGG + chr8_4:5537277-5537296 Msa1309090:intron 30.0%
ATACAACTAAGTAGCCAAAT+AGG - chr8_4:5537294-5537313 None:intergenic 30.0%
!!! TTTTTTTCTGGGAGGATATT+AGG - chr8_4:5537336-5537355 None:intergenic 30.0%
AAACTTAGCAAAGTGAACTA+AGG - chr8_4:5537401-5537420 None:intergenic 30.0%
! GAAATGGATTTCACATAAAG+TGG - chr8_4:5537517-5537536 None:intergenic 30.0%
TGAAATTCGTAAGCATATGA+AGG + chr8_4:5537831-5537850 Msa1309090:CDS 30.0%
! TTTCTTCCTTTGAAAGGTAT+GGG - chr8_4:5538003-5538022 None:intergenic 30.0%
AATGCCTATACATTCATCTA+CGG + chr8_4:5538155-5538174 Msa1309090:CDS 30.0%
TAACACAATAGCAGTTAGTA+AGG - chr8_4:5538271-5538290 None:intergenic 30.0%
! TAACTGCTATTGTGTTATTC+AGG + chr8_4:5538274-5538293 Msa1309090:intron 30.0%
! AACTGCTATTGTGTTATTCA+GGG + chr8_4:5538275-5538294 Msa1309090:intron 30.0%
!! TCAGTACTGAATTTTTGATG+CGG - chr8_4:5538453-5538472 None:intergenic 30.0%
AGAATTTCCAATGGTTATGT+TGG - chr8_4:5538523-5538542 None:intergenic 30.0%
!!! TATTGATTTCTTTTTCGGCA+CGG - chr8_4:5538578-5538597 None:intergenic 30.0%
!! TATTTTAGATATGGTTCAGG+TGG + chr8_4:5538687-5538706 Msa1309090:intron 30.0%
! ATTTTAGATATGGTTCAGGT+GGG + chr8_4:5538688-5538707 Msa1309090:intron 30.0%
AGATTGTGTTTGATTGGAAA+GGG - chr8_4:5538781-5538800 None:intergenic 30.0%
AAAACAAAACGCCCAAAAAA+GGG - chr8_4:5538860-5538879 None:intergenic 30.0%
!! TTTTAACTGACCTTCATCTT+GGG + chr8_4:5538885-5538904 Msa1309090:intron 30.0%
!! TTCTATAAATTGGTCTTTGG+CGG + chr8_4:5539079-5539098 Msa1309090:intron 30.0%
AATCACCTTCCTACAATTAA+TGG + chr8_4:5539218-5539237 Msa1309090:intron 30.0%
!!! CACGGTTTCATTTTTTCTTT+AGG + chr8_4:5539269-5539288 Msa1309090:intron 30.0%
!! GAAGTTGATTTTTACTGTTC+TGG - chr8_4:5539396-5539415 None:intergenic 30.0%
AAAAGAAATTGCCAAATTGC+GGG + chr8_4:5539480-5539499 Msa1309090:CDS 30.0%
!!! AGAACGTTTTAATTCACTCA+AGG - chr8_4:5539696-5539715 None:intergenic 30.0%
CTCAAATATGGTTCCAAATA+TGG + chr8_4:5539737-5539756 Msa1309090:intron 30.0%
! GAATTCTTTTACTAGTGTTC+TGG + chr8_4:5539908-5539927 Msa1309090:intron 30.0%
! ATTTTTCACAATACATCCCT+TGG + chr8_4:5539931-5539950 Msa1309090:intron 30.0%
GCTGGACTTAAAACTTAAAA+TGG - chr8_4:5539961-5539980 None:intergenic 30.0%
CTATTATTGTTTGAAGATGG+CGG + chr8_4:5540105-5540124 Msa1309090:intron 30.0%
AAATAACTCCTGTAATCCAA+AGG - chr8_4:5540292-5540311 None:intergenic 30.0%
TGTCATATGATTGCAAGTAT+CGG - chr8_4:5540320-5540339 None:intergenic 30.0%
AATCATATGACATAGAAACC+TGG + chr8_4:5540328-5540347 Msa1309090:CDS 30.0%
ATATCAGTTTCATGAACTGT+AGG + chr8_4:5540572-5540591 Msa1309090:exon 30.0%
GAATGAGAGAGAAAGTGAAA+AGG - chr8_4:5532824-5532843 None:intergenic 35.0%
! AGAAAGAGAAGTGTGGAAAT+GGG - chr8_4:5532851-5532870 None:intergenic 35.0%
AAATGAGAAAAACCTAGCCA+TGG - chr8_4:5533154-5533173 None:intergenic 35.0%
! AGTGAAACGGAGTTGAATTT+TGG - chr8_4:5533182-5533201 None:intergenic 35.0%
!! AGCAAATTGACTTGCGTTTA+CGG - chr8_4:5533206-5533225 None:intergenic 35.0%
! TCAATTTGCTCAATCACTCA+AGG + chr8_4:5533216-5533235 Msa1309090:CDS 35.0%
! CACGTAGAATCATAGGATTT+TGG + chr8_4:5533733-5533752 Msa1309090:intron 35.0%
AGACTTACAGTGACTCTATA+GGG + chr8_4:5533810-5533829 Msa1309090:intron 35.0%
ATAGGGTAACCAACCATTAT+TGG + chr8_4:5533827-5533846 Msa1309090:intron 35.0%
AATCGCATACCAATAATGGT+TGG - chr8_4:5533839-5533858 None:intergenic 35.0%
!! TCCAAAGTGTTGTCAGATAA+TGG + chr8_4:5533862-5533881 Msa1309090:intron 35.0%
! TCAGATAATGGCTATAGTGT+AGG + chr8_4:5533874-5533893 Msa1309090:intron 35.0%
TCAAACAGTGTTAAGAATCG+TGG - chr8_4:5533952-5533971 None:intergenic 35.0%
CTGTCACTGTAACATATCAA+AGG - chr8_4:5533990-5534009 None:intergenic 35.0%
GATATGTTACAGTGACAGTA+AGG + chr8_4:5533992-5534011 Msa1309090:intron 35.0%
CAATGATGAGTCCAACTAAA+TGG - chr8_4:5534081-5534100 None:intergenic 35.0%
GTGCAATGAAATTTGAGTCT+CGG + chr8_4:5534300-5534319 Msa1309090:CDS 35.0%
TTTGAGTCTCGGATTGTAAA+TGG + chr8_4:5534311-5534330 Msa1309090:CDS 35.0%
GATTCAATTGGAGAATGTTC+AGG + chr8_4:5534362-5534381 Msa1309090:CDS 35.0%
TATTGGATCAGAGGACAAAA+TGG + chr8_4:5534619-5534638 Msa1309090:CDS 35.0%
! ATGGATTGCTTTGACTCATT+TGG + chr8_4:5534638-5534657 Msa1309090:CDS 35.0%
TGGATTGCTTTGACTCATTT+GGG + chr8_4:5534639-5534658 Msa1309090:CDS 35.0%
TCCAATTCCAAAACATCTGT+CGG - chr8_4:5534872-5534891 None:intergenic 35.0%
TAAAGAGGAAAGAGGTTTGA+AGG + chr8_4:5534925-5534944 Msa1309090:CDS 35.0%
! AGAAGAGCCAACAAAAGTTT+TGG + chr8_4:5535021-5535040 Msa1309090:CDS 35.0%
TATTGAAGGTGATGAAGGTA+AGG + chr8_4:5535294-5535313 Msa1309090:CDS 35.0%
! GAGCTACTTTATTGTTAGAC+TGG - chr8_4:5535336-5535355 None:intergenic 35.0%
! TGCGTTGATATTTCTTTAGG+TGG + chr8_4:5535841-5535860 Msa1309090:intron 35.0%
! TTTTCTTCGCATAACACTTC+AGG - chr8_4:5535969-5535988 None:intergenic 35.0%
! GAAGTGTTATGCGAAGAAAA+CGG + chr8_4:5535969-5535988 Msa1309090:intron 35.0%
GAAGAAAACGGAAAGGAATA+GGG + chr8_4:5535981-5536000 Msa1309090:intron 35.0%
CAAATTCTGCTACGAAATAG+CGG - chr8_4:5536165-5536184 None:intergenic 35.0%
ACAATTTCAACAGTTACCTC+AGG - chr8_4:5536619-5536638 None:intergenic 35.0%
!! TGGGAAATGGATTTACCTTT+TGG + chr8_4:5536825-5536844 Msa1309090:intron 35.0%
TACAGTAAAGAATGGCCAAA+AGG - chr8_4:5536843-5536862 None:intergenic 35.0%
TTGATATATGTGAGCTTCAG+TGG + chr8_4:5536913-5536932 Msa1309090:CDS 35.0%
!! TCTTTAGCTTTCGAGAGAAA+AGG - chr8_4:5537105-5537124 None:intergenic 35.0%
TTCTCTCGAAAGCTAAAGAA+AGG + chr8_4:5537106-5537125 Msa1309090:CDS 35.0%
! TTGAAGCAGAAGTACAACAT+CGG + chr8_4:5537247-5537266 Msa1309090:CDS 35.0%
!!! TGTGTTTCTTTTTTTCTGGG+AGG - chr8_4:5537344-5537363 None:intergenic 35.0%
AATGCGTTTAGAGAAATGCT+AGG + chr8_4:5537426-5537445 Msa1309090:intron 35.0%
! CAATAAGAGATGGAGTGTTA+GGG - chr8_4:5537472-5537491 None:intergenic 35.0%
CTAACACTCCATCTCTTATT+GGG + chr8_4:5537471-5537490 Msa1309090:intron 35.0%
CTAACACTCGCTTTCTTATT+TGG - chr8_4:5537567-5537586 None:intergenic 35.0%
AATTTATGATGACCGCATTG+AGG - chr8_4:5537611-5537630 None:intergenic 35.0%
ACTCAGGTAAATCAAAACCA+AGG + chr8_4:5537674-5537693 Msa1309090:intron 35.0%
! AGGCTCTAACATCCAATAAA+AGG + chr8_4:5537773-5537792 Msa1309090:CDS 35.0%
! GGCTCTAACATCCAATAAAA+GGG + chr8_4:5537774-5537793 Msa1309090:CDS 35.0%
! ATCTGGCAATTCCCTTTTAT+TGG - chr8_4:5537788-5537807 None:intergenic 35.0%
TAAGCATATGAAGGCAAAAG+CGG + chr8_4:5537840-5537859 Msa1309090:CDS 35.0%
TCTGAAAAATTGTCCCGATA+AGG + chr8_4:5537873-5537892 Msa1309090:CDS 35.0%
! TAAATTCGCAACAGCCTTAT+CGG - chr8_4:5537890-5537909 None:intergenic 35.0%
! CTTTCTTCCTTTGAAAGGTA+TGG - chr8_4:5538004-5538023 None:intergenic 35.0%
CATACCTTTCAAAGGAAGAA+AGG + chr8_4:5538002-5538021 Msa1309090:CDS 35.0%
GTAGATGAATGTATAGGCAT+TGG - chr8_4:5538156-5538175 None:intergenic 35.0%
TTGGGGTTATTAAGAAGCAA+AGG + chr8_4:5538183-5538202 Msa1309090:CDS 35.0%
! ACTGCTATTGTGTTATTCAG+GGG + chr8_4:5538276-5538295 Msa1309090:intron 35.0%
GACGGAAAACATAAAAGAGA+GGG + chr8_4:5538298-5538317 Msa1309090:CDS 35.0%
! TCAGTACTGAATACTGACAT+AGG + chr8_4:5538463-5538482 Msa1309090:intron 35.0%
! AAAGCATCCAACATAACCAT+TGG + chr8_4:5538513-5538532 Msa1309090:intron 35.0%
! AGTTAGTTTCGTGATTGTAG+TGG + chr8_4:5538650-5538669 Msa1309090:intron 35.0%
! GTTAGTTTCGTGATTGTAGT+GGG + chr8_4:5538651-5538670 Msa1309090:intron 35.0%
! TTTTAGATATGGTTCAGGTG+GGG + chr8_4:5538689-5538708 Msa1309090:intron 35.0%
CAGATTGTGTTTGATTGGAA+AGG - chr8_4:5538782-5538801 None:intergenic 35.0%
CTGTACAGATTGTGTTTGAT+TGG - chr8_4:5538787-5538806 None:intergenic 35.0%
ATATTTCCAGATAACTGACC+TGG + chr8_4:5538821-5538840 Msa1309090:intron 35.0%
AATATACCAGGTCAGTTATC+TGG - chr8_4:5538830-5538849 None:intergenic 35.0%
!!! ATATTGTTTCCCCCCTTTTT+TGG + chr8_4:5538845-5538864 Msa1309090:intron 35.0%
!!! TATTGTTTCCCCCCTTTTTT+GGG + chr8_4:5538846-5538865 Msa1309090:intron 35.0%
AAACAAAACGCCCAAAAAAG+GGG - chr8_4:5538859-5538878 None:intergenic 35.0%
GAAAACAAAACGCCCAAAAA+AGG - chr8_4:5538861-5538880 None:intergenic 35.0%
GATGAAGGTCAGTTAAAACT+TGG - chr8_4:5538883-5538902 None:intergenic 35.0%
!!! GTTTTAACTGACCTTCATCT+TGG + chr8_4:5538884-5538903 Msa1309090:intron 35.0%
GAAAGGGGATATTCATTGTA+TGG + chr8_4:5538915-5538934 Msa1309090:intron 35.0%
GACATCCATTAATTGTAGGA+AGG - chr8_4:5539226-5539245 None:intergenic 35.0%
TTTGTTCAGATCTCAGTTTC+AGG + chr8_4:5539293-5539312 Msa1309090:CDS 35.0%
TTGTTCAGATCTCAGTTTCA+GGG + chr8_4:5539294-5539313 Msa1309090:CDS 35.0%
ACTCTACTATACATGCTGAT+TGG + chr8_4:5539348-5539367 Msa1309090:CDS 35.0%
! CTCTACTATACATGCTGATT+GGG + chr8_4:5539349-5539368 Msa1309090:CDS 35.0%
AAAGAAATTGCCAAATTGCG+GGG + chr8_4:5539481-5539500 Msa1309090:CDS 35.0%
AATGGAATTTACCACTGGAA+AGG - chr8_4:5539554-5539573 None:intergenic 35.0%
TATTCCTTGGGTTTACTGTT+AGG - chr8_4:5540428-5540447 None:intergenic 35.0%
TAACAGTAAACCCAAGGAAT+AGG + chr8_4:5540427-5540446 Msa1309090:CDS 35.0%
CAACACTAATCCTATTCCTT+GGG - chr8_4:5540440-5540459 None:intergenic 35.0%
TCAACACTAATCCTATTCCT+TGG - chr8_4:5540441-5540460 None:intergenic 35.0%
! TTAGTGTTGAAGATGTTCTC+AGG + chr8_4:5540451-5540470 Msa1309090:CDS 35.0%
ATGAGATCATGAGAAAGACA+AGG + chr8_4:5540496-5540515 Msa1309090:CDS 35.0%
AATACTGTTTGACCTGAAGA+GGG + chr8_4:5540606-5540625 Msa1309090:three_prime_UTR 35.0%
AAAGTGAAAAGGAGTAGGAG+CGG - chr8_4:5532813-5532832 None:intergenic 40.0%
GAGAGAAAGTGAAAAGGAGT+AGG - chr8_4:5532818-5532837 None:intergenic 40.0%
! GAGAAAGAGAAGTGTGGAAA+TGG - chr8_4:5532852-5532871 None:intergenic 40.0%
!! GCAAATTGACTTGCGTTTAC+GGG - chr8_4:5533205-5533224 None:intergenic 40.0%
!! TGAGATTTTGGTGAAACAGG+TGG + chr8_4:5533318-5533337 Msa1309090:intron 40.0%
!! GTAGTGGAATCACACTGTTT+TGG + chr8_4:5533502-5533521 Msa1309090:intron 40.0%
ACTGTCACTGTCAGTATCAA+AGG - chr8_4:5533635-5533654 None:intergenic 40.0%
CAGACTTACAGTGACTCTAT+AGG + chr8_4:5533809-5533828 Msa1309090:intron 40.0%
GCCATTATCTGACAACACTT+TGG - chr8_4:5533866-5533885 None:intergenic 40.0%
! TTTTGCTGATACTACTGCAG+AGG + chr8_4:5534256-5534275 Msa1309090:CDS 40.0%
AGTCTCGGATTGTAAATGGT+GGG + chr8_4:5534315-5534334 Msa1309090:CDS 40.0%
! TACAGGGAAGCTGATAATGA+CGG + chr8_4:5534407-5534426 Msa1309090:CDS 40.0%
TAATGACGGCATAACAAGCA+TGG + chr8_4:5534421-5534440 Msa1309090:CDS 40.0%
ATGGTCAAAGGAGAGATATC+TGG + chr8_4:5534440-5534459 Msa1309090:CDS 40.0%
TCATTAGTGAAAGTGACTCG+AGG + chr8_4:5534492-5534511 Msa1309090:CDS 40.0%
GATTGATCTTGGACACTAGT+TGG - chr8_4:5534575-5534594 None:intergenic 40.0%
! TGTTGTTGGTATTGGATCAG+AGG + chr8_4:5534610-5534629 Msa1309090:CDS 40.0%
!! GTAGGGGTTATGTTTTGTTC+AGG - chr8_4:5534674-5534693 None:intergenic 40.0%
ACAAAACATAACCCCTACTG+TGG + chr8_4:5534676-5534695 Msa1309090:CDS 40.0%
AGAAGAGAAAAGAGGTCCAA+AGG + chr8_4:5534766-5534785 Msa1309090:CDS 40.0%
AGATGGAAGATGTTGCTCAA+AGG + chr8_4:5534819-5534838 Msa1309090:CDS 40.0%
GATGGAAGATGTTGCTCAAA+GGG + chr8_4:5534820-5534839 Msa1309090:CDS 40.0%
! AGAAGATCCGACAGATGTTT+TGG + chr8_4:5534862-5534881 Msa1309090:CDS 40.0%
!!! TCCGACAGATGTTTTGGAAT+TGG + chr8_4:5534868-5534887 Msa1309090:CDS 40.0%
AGGATGAATCCTGTAGTATG+TGG + chr8_4:5534998-5535017 Msa1309090:CDS 40.0%
GGGCATGCATGTATTAGATT+TGG + chr8_4:5535054-5535073 Msa1309090:CDS 40.0%
! AAGCTGCTTTGGATTTGAAG+AGG - chr8_4:5535137-5535156 None:intergenic 40.0%
AAACCTTCTCGCACATTGAA+GGG + chr8_4:5535160-5535179 Msa1309090:CDS 40.0%
!! AGTGACTCGGTTAGAATTTG+AGG - chr8_4:5535214-5535233 None:intergenic 40.0%
TTTGTTACAGGCTAGTGACT+CGG - chr8_4:5535227-5535246 None:intergenic 40.0%
TGAAGGTAAGGATCAGAACA+TGG + chr8_4:5535306-5535325 Msa1309090:CDS 40.0%
! AGCTGCTTTGGATTTGAAGA+GGG - chr8_4:5535136-5535155 None:intergenic 40.0%
! AAGCTGCTTTGGATTTGAAG+AGG - chr8_4:5535137-5535156 None:intergenic 40.0%
GAAGATTTCAGAAGCTGCTT+TGG - chr8_4:5535373-5535392 None:intergenic 40.0%
GAAATCTTCTCGCATGTTGA+AGG + chr8_4:5535384-5535403 Msa1309090:CDS 40.0%
ATAGAGGAAGAAGAAGGTTC+AGG + chr8_4:5535754-5535773 Msa1309090:CDS 40.0%
CATCAGTTGTTCTATGAGCA+CGG - chr8_4:5535882-5535901 None:intergenic 40.0%
GTTATGCGAAGAAAACGGAA+AGG + chr8_4:5535974-5535993 Msa1309090:intron 40.0%
CGAAGAAAACGGAAAGGAAT+AGG + chr8_4:5535980-5535999 Msa1309090:intron 40.0%
GGAAAAAGGATGCAAGTAAC+TGG - chr8_4:5536067-5536086 None:intergenic 40.0%
! GGAATATGCTTGAGCGTTTT+GGG + chr8_4:5536426-5536445 Msa1309090:CDS 40.0%
ATGAACTCGAGAGAAAGGAT+GGG - chr8_4:5536744-5536763 None:intergenic 40.0%
CATAGATGAACTCGAGAGAA+AGG - chr8_4:5536749-5536768 None:intergenic 40.0%
ATATGTGAGCTTCAGTGGTA+TGG + chr8_4:5536918-5536937 Msa1309090:CDS 40.0%
TATGTGAGCTTCAGTGGTAT+GGG + chr8_4:5536919-5536938 Msa1309090:CDS 40.0%
! GTATGGGTTTTGCATGTTCA+AGG + chr8_4:5536935-5536954 Msa1309090:CDS 40.0%
GTTCACAGAGATGTTAAACC+TGG + chr8_4:5537073-5537092 Msa1309090:CDS 40.0%
! AGAAGTACAACATCGGAAGT+AGG + chr8_4:5537254-5537273 Msa1309090:intron 40.0%
! CCAATAAGAGATGGAGTGTT+AGG - chr8_4:5537473-5537492 None:intergenic 40.0%
CCTAACACTCCATCTCTTAT+TGG + chr8_4:5537470-5537489 Msa1309090:intron 40.0%
TTATTGGGTGAAACCCATGT+GGG + chr8_4:5537486-5537505 Msa1309090:intron 40.0%
! TTATTTGGTGAGACCCATGT+GGG - chr8_4:5537552-5537571 None:intergenic 40.0%
TTCCTCCAAGATTCTTGTCT+TGG - chr8_4:5537750-5537769 None:intergenic 40.0%
TAAAAGGGAATTGCCAGATC+TGG + chr8_4:5537789-5537808 Msa1309090:CDS 40.0%
! AAATTCGCAACAGCCTTATC+GGG - chr8_4:5537889-5537908 None:intergenic 40.0%
CTTAGTGCTAGTAACATCTC+TGG - chr8_4:5537953-5537972 None:intergenic 40.0%
! CTTTGAAAGGTATGGGTTCT+CGG - chr8_4:5537996-5538015 None:intergenic 40.0%
AGCTCCTTTCTTCCTTTGAA+AGG - chr8_4:5538009-5538028 None:intergenic 40.0%
ATTGCATAGAATTCTGCACG+AGG - chr8_4:5538038-5538057 None:intergenic 40.0%
TGAAAAGTCCTTCTTCTCAG+AGG + chr8_4:5538076-5538095 Msa1309090:CDS 40.0%
TCCTTCTTCTCAGAGGAAAA+GGG + chr8_4:5538083-5538102 Msa1309090:CDS 40.0%
GCAACCGTAGATGAATGTAT+AGG - chr8_4:5538162-5538181 None:intergenic 40.0%
ACATTCATCTACGGTTGCTT+TGG + chr8_4:5538164-5538183 Msa1309090:CDS 40.0%
! CATTCATCTACGGTTGCTTT+GGG + chr8_4:5538165-5538184 Msa1309090:CDS 40.0%
! ATTCATCTACGGTTGCTTTG+GGG + chr8_4:5538166-5538185 Msa1309090:CDS 40.0%
! AGCTTCTGAATTCTGAAGAG+TGG + chr8_4:5538223-5538242 Msa1309090:intron 40.0%
! CTATTGTGTTATTCAGGGGA+CGG + chr8_4:5538280-5538299 Msa1309090:intron 40.0%
GGACGGAAAACATAAAAGAG+AGG + chr8_4:5538297-5538316 Msa1309090:CDS 40.0%
AAACCCTTTGTTCCAACACA+TGG - chr8_4:5538325-5538344 None:intergenic 40.0%
TAAGCGCAAGAATTTACCTC+CGG - chr8_4:5538355-5538374 None:intergenic 40.0%
CAGCACTGTAGAATTTCCAA+TGG - chr8_4:5538532-5538551 None:intergenic 40.0%
TTGGAAATTCTACAGTGCTG+TGG + chr8_4:5538532-5538551 Msa1309090:intron 40.0%
TTTAGATATGGTTCAGGTGG+GGG + chr8_4:5538690-5538709 Msa1309090:intron 40.0%
AATTGTAGTTTCCTGCTGAC+TGG + chr8_4:5538718-5538737 Msa1309090:intron 40.0%
AACAAAACGCCCAAAAAAGG+GGG - chr8_4:5538858-5538877 None:intergenic 40.0%
CAGCTCAATAATGAACACAC+AGG - chr8_4:5539143-5539162 None:intergenic 40.0%
CTGTGTGTTCATTATTGAGC+TGG + chr8_4:5539141-5539160 Msa1309090:intron 40.0%
CCGACCAAATATCAACCTTA+GGG - chr8_4:5539320-5539339 None:intergenic 40.0%
!! CCCTAAGGTTGATATTTGGT+CGG + chr8_4:5539317-5539336 Msa1309090:CDS 40.0%
ATTGGGAAAACTTCTTTCCC+TGG + chr8_4:5539366-5539385 Msa1309090:CDS 40.0%
AAAACATAGTCAGCACGGAA+AGG - chr8_4:5539447-5539466 None:intergenic 40.0%
!!! TTTCCGTGCTGACTATGTTT+TGG + chr8_4:5539446-5539465 Msa1309090:intron 40.0%
AAGCATTATCCCACTAAGTG+GGG - chr8_4:5539806-5539825 None:intergenic 40.0%
CAAGCATTATCCCACTAAGT+GGG - chr8_4:5539807-5539826 None:intergenic 40.0%
ACTAGAAAAAGATGGTCCCT+TGG + chr8_4:5540076-5540095 Msa1309090:intron 40.0%
!! GCAGCTCTTATTTCTGAACA+AGG + chr8_4:5540244-5540263 Msa1309090:intron 40.0%
AAGCTAATGTTTGCCTCCTT+TGG + chr8_4:5540273-5540292 Msa1309090:intron 40.0%
TAACTCCTGTAATCCAAAGG+AGG - chr8_4:5540289-5540308 None:intergenic 40.0%
GGGACTTTATCAACAAACTC+TGG - chr8_4:5540375-5540394 None:intergenic 40.0%
TCTCATGATCTCATTACACG+AGG - chr8_4:5540490-5540509 None:intergenic 40.0%
CAATACTGTTTGACCTGAAG+AGG + chr8_4:5540605-5540624 Msa1309090:three_prime_UTR 40.0%
!!! ATTTTTTGCAGACCCTCTTC+AGG - chr8_4:5540621-5540640 None:intergenic 40.0%
ACGACTAATTGCAGAGAAAC+TGG + chr8_4:5540670-5540689 Msa1309090:three_prime_UTR 40.0%
CTGGCACATAATGTAAACTG+TGG + chr8_4:5540689-5540708 Msa1309090:three_prime_UTR 40.0%
CTAGCTGAAATCACAGGTTA+TGG - chr8_4:5540794-5540813 None:intergenic 40.0%
TTGCAACTAGCTGAAATCAC+AGG - chr8_4:5540800-5540819 None:intergenic 40.0%
GAGAGAGAGAAAGAGAAGTG+TGG - chr8_4:5532858-5532877 None:intergenic 45.0%
TTAACGGAGAGAGGAGAATC+AGG - chr8_4:5533090-5533109 None:intergenic 45.0%
CCTCTCTCCGTTAACAGTAA+CGG + chr8_4:5533096-5533115 Msa1309090:CDS 45.0%
TTGCGTTTACGGGAGTGAAA+CGG - chr8_4:5533195-5533214 None:intergenic 45.0%
TCACCAATTGCAAGCCGTTT+CGG - chr8_4:5533351-5533370 None:intergenic 45.0%
TCGTGGTGCACAAAAAACAG+CGG - chr8_4:5533935-5533954 None:intergenic 45.0%
GAGTCTCGGATTGTAAATGG+TGG + chr8_4:5534314-5534333 Msa1309090:CDS 45.0%
GGCATAACAAGCATGGTCAA+AGG + chr8_4:5534428-5534447 Msa1309090:CDS 45.0%
GAGGGTCTAGATAGATTCGT+GGG + chr8_4:5534521-5534540 Msa1309090:CDS 45.0%
GGTGGAGCAAGATTAGCAAA+GGG - chr8_4:5534554-5534573 None:intergenic 45.0%
TGGTGGAGCAAGATTAGCAA+AGG - chr8_4:5534555-5534574 None:intergenic 45.0%
TGATCTTGGACACTAGTTGG+TGG - chr8_4:5534572-5534591 None:intergenic 45.0%
AACATAACCCCTACTGTGGA+TGG + chr8_4:5534680-5534699 Msa1309090:CDS 45.0%
! CTTTTCACCATCCACAGTAG+GGG - chr8_4:5534690-5534709 None:intergenic 45.0%
! CCTTTTCACCATCCACAGTA+GGG - chr8_4:5534691-5534710 None:intergenic 45.0%
! ACCTTTTCACCATCCACAGT+AGG - chr8_4:5534692-5534711 None:intergenic 45.0%
GAGAAAAGAGGTCCAAAGGA+AGG + chr8_4:5534770-5534789 Msa1309090:CDS 45.0%
AAGAGGTCCAAAGGAAGGAT+TGG + chr8_4:5534775-5534794 Msa1309090:CDS 45.0%
GAGGAAAGAGGTTTGAAGGA+AGG + chr8_4:5534929-5534948 Msa1309090:CDS 45.0%
AGATGGAAGATGTTGCTCTG+AGG + chr8_4:5534978-5534997 Msa1309090:CDS 45.0%
CAGTGAGAAAAATGGTGACC+CGG + chr8_4:5535089-5535108 Msa1309090:CDS 45.0%
GAAGGTTTCAGAAGCTGCTT+TGG - chr8_4:5535148-5535167 None:intergenic 45.0%
GAAACCTTCTCGCACATTGA+AGG + chr8_4:5535159-5535178 Msa1309090:CDS 45.0%
AACCTTCTCGCACATTGAAG+GGG + chr8_4:5535161-5535180 Msa1309090:CDS 45.0%
TCTTCTCGCATGTTGAAGGA+TGG + chr8_4:5535388-5535407 Msa1309090:CDS 45.0%
CGTGCTCATAGAACAACTGA+TGG + chr8_4:5535880-5535899 Msa1309090:CDS 45.0%
AACGGAAAGGAATAGGGTCA+AGG + chr8_4:5535987-5536006 Msa1309090:intron 45.0%
ACGGAAAGGAATAGGGTCAA+GGG + chr8_4:5535988-5536007 Msa1309090:intron 45.0%
! CGGAATATGCTTGAGCGTTT+TGG + chr8_4:5536425-5536444 Msa1309090:CDS 45.0%
TGAACTCGAGAGAAAGGATG+GGG - chr8_4:5536743-5536762 None:intergenic 45.0%
GATGAACTCGAGAGAAAGGA+TGG - chr8_4:5536745-5536764 None:intergenic 45.0%
CGAGAGAAAAGGAAGTTTCC+AGG - chr8_4:5537094-5537113 None:intergenic 45.0%
TGGCAAGGTTGAAGTCGATA+AGG - chr8_4:5537135-5537154 None:intergenic 45.0%
!! TATCGACTTCAACCTTGCCA+TGG + chr8_4:5537135-5537154 Msa1309090:CDS 45.0%
ACTTCAACCTTGCCATGGTT+AGG + chr8_4:5537140-5537159 Msa1309090:intron 45.0%
CAAGAGAAGCAACCTAACCA+TGG - chr8_4:5537155-5537174 None:intergenic 45.0%
GGGTTTCACCCAATAAGAGA+TGG - chr8_4:5537482-5537501 None:intergenic 45.0%
CTTATTGGGTGAAACCCATG+TGG + chr8_4:5537485-5537504 Msa1309090:intron 45.0%
TAAAGTGGTGAGACCCACAT+GGG - chr8_4:5537502-5537521 None:intergenic 45.0%
ATAAAGTGGTGAGACCCACA+TGG - chr8_4:5537503-5537522 None:intergenic 45.0%
! TGGGTCTCACACTTTGGAAA+TGG - chr8_4:5537533-5537552 None:intergenic 45.0%
! CTTATTTGGTGAGACCCATG+TGG - chr8_4:5537553-5537572 None:intergenic 45.0%
GTCCATAACACTCCTCAATG+CGG + chr8_4:5537596-5537615 Msa1309090:intron 45.0%
TTACTGGATGCATCAAGCCT+TGG - chr8_4:5537694-5537713 None:intergenic 45.0%
AGACGGGAGAGGAATATTAC+TGG - chr8_4:5537710-5537729 None:intergenic 45.0%
AGTAATATTCCTCTCCCGTC+TGG + chr8_4:5537709-5537728 Msa1309090:CDS 45.0%
ATTCTTGTCTTGGACCACAG+GGG - chr8_4:5537740-5537759 None:intergenic 45.0%
GATTCTTGTCTTGGACCACA+GGG - chr8_4:5537741-5537760 None:intergenic 45.0%
AGATTCTTGTCTTGGACCAC+AGG - chr8_4:5537742-5537761 None:intergenic 45.0%
GTGGTCCAAGACAAGAATCT+TGG + chr8_4:5537742-5537761 Msa1309090:CDS 45.0%
GTCCAAGACAAGAATCTTGG+AGG + chr8_4:5537745-5537764 Msa1309090:CDS 45.0%
GCGAATTTACGTAGAGCACA+AGG + chr8_4:5537901-5537920 Msa1309090:CDS 45.0%
CGAGAACCCATACCTTTCAA+AGG + chr8_4:5537994-5538013 Msa1309090:CDS 45.0%
GTCCTTCTTCTCAGAGGAAA+AGG + chr8_4:5538082-5538101 Msa1309090:CDS 45.0%
!! ACCCTTTTCCTCTGAGAAGA+AGG - chr8_4:5538087-5538106 None:intergenic 45.0%
AAAAGGGTTACTGCTCCTTC+AGG + chr8_4:5538099-5538118 Msa1309090:CDS 45.0%
AAAAGAGAGGGTCCATGTGT+TGG + chr8_4:5538310-5538329 Msa1309090:CDS 45.0%
GGTCCATGTGTTGGAACAAA+GGG + chr8_4:5538319-5538338 Msa1309090:CDS 45.0%
AAGCGCAAGAATTTACCTCC+GGG - chr8_4:5538354-5538373 None:intergenic 45.0%
GAAATTCTACAGTGCTGTGG+AGG + chr8_4:5538535-5538554 Msa1309090:intron 45.0%
GCTGTGGAGGTTGCAAATAT+AGG + chr8_4:5538548-5538567 Msa1309090:intron 45.0%
AAGGGGGGAAACAATATACC+AGG - chr8_4:5538842-5538861 None:intergenic 45.0%
ACAAAACGCCCAAAAAAGGG+GGG - chr8_4:5538857-5538876 None:intergenic 45.0%
!! AGGGCCCTAAGGTTGATATT+TGG + chr8_4:5539313-5539332 Msa1309090:CDS 45.0%
GCCGACCAAATATCAACCTT+AGG - chr8_4:5539321-5539340 None:intergenic 45.0%
!! AAGGTTGATATTTGGTCGGC+TGG + chr8_4:5539321-5539340 Msa1309090:CDS 45.0%
!! TTTACTGTTCTGGTTCGCCA+GGG - chr8_4:5539386-5539405 None:intergenic 45.0%
!!! TTTTACTGTTCTGGTTCGCC+AGG - chr8_4:5539387-5539406 None:intergenic 45.0%
GCACCAAAACATAGTCAGCA+CGG - chr8_4:5539452-5539471 None:intergenic 45.0%
!!! TGCTGACTATGTTTTGGTGC+AGG + chr8_4:5539452-5539471 Msa1309090:intron 45.0%
CCACTGGAAAGGATGTTTCA+CGG - chr8_4:5539543-5539562 None:intergenic 45.0%
ACTAAGTGGGGTCAACTACA+TGG - chr8_4:5539794-5539813 None:intergenic 45.0%
ATGTAGTTGACCCCACTTAG+TGG + chr8_4:5539793-5539812 Msa1309090:intron 45.0%
TGTAGTTGACCCCACTTAGT+GGG + chr8_4:5539794-5539813 Msa1309090:intron 45.0%
CCAAGCATTATCCCACTAAG+TGG - chr8_4:5539808-5539827 None:intergenic 45.0%
CCACTTAGTGGGATAATGCT+TGG + chr8_4:5539805-5539824 Msa1309090:intron 45.0%
CTAGTCAATTCTCACTTCGC+AGG - chr8_4:5540002-5540021 None:intergenic 45.0%
GTTTGCCTCCTTTGGATTAC+AGG + chr8_4:5540281-5540300 Msa1309090:intron 45.0%
AGTGCCTAACAGTAAACCCA+AGG + chr8_4:5540421-5540440 Msa1309090:CDS 45.0%
AAGACAAGGATGCTTCAACG+AGG + chr8_4:5540510-5540529 Msa1309090:CDS 45.0%
GCTGAAATCACAGGTTATGG+TGG - chr8_4:5540791-5540810 None:intergenic 45.0%
! ATTTTGGATCGGCGGTGTGA+GGG - chr8_4:5532889-5532908 None:intergenic 50.0%
TTCGAGGAGTGGAGTTGGAT+CGG - chr8_4:5532941-5532960 None:intergenic 50.0%
GTTGAAGAAGCGGCAACGAA+GGG - chr8_4:5533031-5533050 None:intergenic 50.0%
CAGGAAGTGAAGCAACGTGA+CGG - chr8_4:5533071-5533090 None:intergenic 50.0%
CCGTTACTGTTAACGGAGAG+AGG - chr8_4:5533099-5533118 None:intergenic 50.0%
CATGGCGAAAGCAGCTTCAA+CGG - chr8_4:5533136-5533155 None:intergenic 50.0%
CAGGTGGAAGAGATCCGAAA+CGG + chr8_4:5533334-5533353 Msa1309090:intron 50.0%
GATCCGAAACGGCTTGCAAT+TGG + chr8_4:5533345-5533364 Msa1309090:CDS 50.0%
CGAGGGTCTAGATAGATTCG+TGG + chr8_4:5534520-5534539 Msa1309090:CDS 50.0%
CCCTACTGTGGATGGTGAAA+AGG + chr8_4:5534688-5534707 Msa1309090:CDS 50.0%
GGCTCTTCTCCACATACTAC+AGG - chr8_4:5535010-5535029 None:intergenic 50.0%
ACCTTCTCGCACATTGAAGG+GGG + chr8_4:5535162-5535181 Msa1309090:CDS 50.0%
TGTTGAGCATGAGAGACCTG+AGG + chr8_4:5536600-5536619 Msa1309090:CDS 50.0%
ACTTGCGTGCTTGCACAAAG+AGG + chr8_4:5536959-5536978 Msa1309090:CDS 50.0%
GAAGCAACCTAACCATGGCA+AGG - chr8_4:5537150-5537169 None:intergenic 50.0%
TCCAAAGTGTGAGACCCACA+TGG + chr8_4:5537535-5537554 Msa1309090:intron 50.0%
CCAAAGTGTGAGACCCACAT+GGG + chr8_4:5537536-5537555 Msa1309090:intron 50.0%
!! GACCGCATTGAGGAGTGTTA+TGG - chr8_4:5537601-5537620 None:intergenic 50.0%
TTCCTACGATCTGCCAGATC+TGG - chr8_4:5537805-5537824 None:intergenic 50.0%
ATGAAGGCAAAAGCGGATGC+TGG + chr8_4:5537847-5537866 Msa1309090:CDS 50.0%
GCTAGTAACATCTCTGGCAG+AGG - chr8_4:5537947-5537966 None:intergenic 50.0%
CTAAGACTGCTTCTGCCGAT+AGG + chr8_4:5537968-5537987 Msa1309090:CDS 50.0%
TATGGGTTCTCGGAGCCTAT+CGG - chr8_4:5537986-5538005 None:intergenic 50.0%
GGGTCCATGTGTTGGAACAA+AGG + chr8_4:5538318-5538337 Msa1309090:CDS 50.0%
AAGAATTTACCTCCGGGGCA+CGG - chr8_4:5538348-5538367 None:intergenic 50.0%
AGCGCAAGAATTTACCTCCG+GGG - chr8_4:5538353-5538372 None:intergenic 50.0%
! GTAGTTTCCTGCTGACTGGT+TGG + chr8_4:5538722-5538741 Msa1309090:intron 50.0%
GATAAGTCCAACCAGTCAGC+AGG - chr8_4:5538732-5538751 None:intergenic 50.0%
AACTGACCTTCATCTTGGGC+AGG + chr8_4:5538889-5538908 Msa1309090:intron 50.0%
ACTGACCTTCATCTTGGGCA+GGG + chr8_4:5538890-5538909 Msa1309090:intron 50.0%
TTCTTCCCTGCCCAAGATGA+AGG - chr8_4:5538898-5538917 None:intergenic 50.0%
TCATCTTGGGCAGGGAAGAA+AGG + chr8_4:5538898-5538917 Msa1309090:intron 50.0%
CATCTTGGGCAGGGAAGAAA+GGG + chr8_4:5538899-5538918 Msa1309090:intron 50.0%
ATCTTGGGCAGGGAAGAAAG+GGG + chr8_4:5538900-5538919 Msa1309090:intron 50.0%
ATCTCAGTTTCAGGGCCCTA+AGG + chr8_4:5539302-5539321 Msa1309090:CDS 50.0%
TGTTTCACGGTCATGCAGCT+TGG - chr8_4:5539530-5539549 None:intergenic 50.0%
CCGTGAAACATCCTTTCCAG+TGG + chr8_4:5539540-5539559 Msa1309090:CDS 50.0%
CTTTGTGTGCAACTTGCACC+AGG - chr8_4:5540349-5540368 None:intergenic 50.0%
AGGATGCTTCAACGAGGTCT+TGG + chr8_4:5540516-5540535 Msa1309090:CDS 50.0%
AAAAGGAGTAGGAGCGGAGC+GGG - chr8_4:5532807-5532826 None:intergenic 55.0%
GAAAAGGAGTAGGAGCGGAG+CGG - chr8_4:5532808-5532827 None:intergenic 55.0%
! TTTTGGATCGGCGGTGTGAG+GGG - chr8_4:5532888-5532907 None:intergenic 55.0%
! CATTTTGGATCGGCGGTGTG+AGG - chr8_4:5532890-5532909 None:intergenic 55.0%
! GCGGAGACATTTTGGATCGG+CGG - chr8_4:5532897-5532916 None:intergenic 55.0%
! CCGGCGGAGACATTTTGGAT+CGG - chr8_4:5532900-5532919 None:intergenic 55.0%
CCGATCCAAAATGTCTCCGC+CGG + chr8_4:5532897-5532916 Msa1309090:exon 55.0%
! TGGTTCCGGCGGAGACATTT+TGG - chr8_4:5532905-5532924 None:intergenic 55.0%
TGGTCTTCGAGGAGTGGAGT+TGG - chr8_4:5532946-5532965 None:intergenic 55.0%
!! CAGGATTGGTCTTCGAGGAG+TGG - chr8_4:5532952-5532971 None:intergenic 55.0%
CACTCCTCGAAGACCAATCC+TGG + chr8_4:5532950-5532969 Msa1309090:CDS 55.0%
CTCTCTCTCCTCCTCCAGAT+CGG + chr8_4:5532979-5532998 Msa1309090:CDS 55.0%
! GAAAGATACTCCGCGTCGAC+GGG - chr8_4:5533009-5533028 None:intergenic 55.0%
GGAAAGATACTCCGCGTCGA+CGG - chr8_4:5533010-5533029 None:intergenic 55.0%
CGTTGAAGAAGCGGCAACGA+AGG - chr8_4:5533032-5533051 None:intergenic 55.0%
!! GCAACGTGACGGACGAAATC+CGG - chr8_4:5533060-5533079 None:intergenic 55.0%
GCGAAAGCAGCTTCAACGGA+AGG - chr8_4:5533132-5533151 None:intergenic 55.0%
! CGTTGAAGCTGCTTTCGCCA+TGG + chr8_4:5533134-5533153 Msa1309090:CDS 55.0%
! AAGCTGCTTTCGCCATGGCT+AGG + chr8_4:5533139-5533158 Msa1309090:CDS 55.0%
AAGTGACTCGAGGAAGCTCG+AGG + chr8_4:5534502-5534521 Msa1309090:CDS 55.0%
AGTGACTCGAGGAAGCTCGA+GGG + chr8_4:5534503-5534522 Msa1309090:CDS 55.0%
AGGGTCGATCCTGTAGCATG+CGG + chr8_4:5534839-5534858 Msa1309090:CDS 55.0%
GGATCTTCTCCGCATGCTAC+AGG - chr8_4:5534851-5534870 None:intergenic 55.0%
CCTTCTCGCACATTGAAGGG+GGG + chr8_4:5535163-5535182 Msa1309090:CDS 55.0%
CCCATGTGGGTCTCACACTT+TGG - chr8_4:5537539-5537558 None:intergenic 55.0%
ACCACAGGGGAAGAACCAGA+CGG - chr8_4:5537727-5537746 None:intergenic 55.0%
TGCCAGATCTGGCAGATCGT+AGG + chr8_4:5537800-5537819 Msa1309090:CDS 55.0%
CGTAGAGCACAAGGAGCAGA+TGG + chr8_4:5537910-5537929 Msa1309090:CDS 55.0%
AGCACAAGGAGCAGATGGCT+CGG + chr8_4:5537915-5537934 Msa1309090:CDS 55.0%
GGTTACTGCTCCTTCAGGCA+AGG + chr8_4:5538104-5538123 Msa1309090:CDS 55.0%
GCTCCTTCAGGCAAGGTAGA+TGG + chr8_4:5538111-5538130 Msa1309090:CDS 55.0%
CTGCCATCTACCTTGCCTGA+AGG - chr8_4:5538117-5538136 None:intergenic 55.0%
CTTCAGGCAAGGTAGATGGC+AGG + chr8_4:5538115-5538134 Msa1309090:CDS 55.0%
AACAAAGGGTTTCCGTGCCC+CGG + chr8_4:5538333-5538352 Msa1309090:CDS 55.0%
CTCTTCACTGCCCCGCAATT+TGG - chr8_4:5539494-5539513 None:intergenic 55.0%
!! CAGTGAAGAGCTTTGGGAGG+TGG + chr8_4:5539504-5539523 Msa1309090:CDS 55.0%
GGAGTTGGATCGGCGAGTTG+CGG - chr8_4:5532931-5532950 None:intergenic 60.0%
!! GGTGCCAGGATTGGTCTTCG+AGG - chr8_4:5532957-5532976 None:intergenic 60.0%
!! GAGAGAGGAGGTGCCAGGAT+TGG - chr8_4:5532966-5532985 None:intergenic 60.0%
TCTGGAGGAGGAGAGAGAGG+AGG - chr8_4:5532978-5532997 None:intergenic 60.0%
CGATCTGGAGGAGGAGAGAG+AGG - chr8_4:5532981-5533000 None:intergenic 60.0%
!! CCGGCGAAGCGTTGAAGAAG+CGG - chr8_4:5533041-5533060 None:intergenic 60.0%
CCGCTTCTTCAACGCTTCGC+CGG + chr8_4:5533038-5533057 Msa1309090:CDS 60.0%
CCCCCCTTCAATGTGCGAGA+AGG - chr8_4:5535166-5535185 None:intergenic 60.0%
CCACAGGGGAAGAACCAGAC+GGG - chr8_4:5537726-5537745 None:intergenic 60.0%
GCACAAGGAGCAGATGGCTC+GGG + chr8_4:5537916-5537935 Msa1309090:CDS 60.0%
TGCGGGGCAGTGAAGAGCTT+TGG + chr8_4:5539497-5539516 Msa1309090:CDS 60.0%
GCGGGGCAGTGAAGAGCTTT+GGG + chr8_4:5539498-5539517 Msa1309090:CDS 60.0%
!! GGGCAGTGAAGAGCTTTGGG+AGG + chr8_4:5539501-5539520 Msa1309090:CDS 60.0%
! AGTTGCGGTGGTGGTTCCGG+CGG - chr8_4:5532916-5532935 None:intergenic 65.0%
! GCGAGTTGCGGTGGTGGTTC+CGG - chr8_4:5532919-5532938 None:intergenic 65.0%
GTTGGATCGGCGAGTTGCGG+TGG - chr8_4:5532928-5532947 None:intergenic 65.0%
!! GAGGAGAGAGAGGAGGTGCC+AGG - chr8_4:5532971-5532990 None:intergenic 65.0%
CGGGATGACCGATCTGGAGG+AGG - chr8_4:5532990-5533009 None:intergenic 65.0%
CGACGGGATGACCGATCTGG+AGG - chr8_4:5532993-5533012 None:intergenic 65.0%
CGTCGACGGGATGACCGATC+TGG - chr8_4:5532996-5533015 None:intergenic 65.0%
GATCGGTCATCCCGTCGACG+CGG + chr8_4:5532996-5533015 Msa1309090:CDS 65.0%
GGGGAAGAACCAGACGGGAG+AGG - chr8_4:5537721-5537740 None:intergenic 65.0%
!! CCCGTCTGGTTCTTCCCCTG+TGG + chr8_4:5537723-5537742 Msa1309090:CDS 65.0%
AAAGGGTTTCCGTGCCCCGG+AGG + chr8_4:5538336-5538355 Msa1309090:CDS 65.0%
GGATCGGCGAGTTGCGGTGG+TGG - chr8_4:5532925-5532944 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 5532770 5540848 5532770 ID=Msa1309090;Name=Msa1309090
chr8_4 mRNA 5532770 5540848 5532770 ID=Msa1309090-mRNA-1;Parent=Msa1309090;Name=Msa1309090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=137|1|1|1|1|1|15|276|1087
chr8_4 exon 5532770 5533237 5532770 ID=Msa1309090-mRNA-1:exon:1764;Parent=Msa1309090-mRNA-1
chr8_4 exon 5533337 5533395 5533337 ID=Msa1309090-mRNA-1:exon:1765;Parent=Msa1309090-mRNA-1
chr8_4 exon 5534254 5535588 5534254 ID=Msa1309090-mRNA-1:exon:1766;Parent=Msa1309090-mRNA-1
chr8_4 exon 5535715 5535775 5535715 ID=Msa1309090-mRNA-1:exon:1767;Parent=Msa1309090-mRNA-1
chr8_4 exon 5535860 5535922 5535860 ID=Msa1309090-mRNA-1:exon:1768;Parent=Msa1309090-mRNA-1
chr8_4 exon 5536384 5536447 5536384 ID=Msa1309090-mRNA-1:exon:1769;Parent=Msa1309090-mRNA-1
chr8_4 exon 5536528 5536621 5536528 ID=Msa1309090-mRNA-1:exon:1770;Parent=Msa1309090-mRNA-1
chr8_4 exon 5536897 5536980 5536897 ID=Msa1309090-mRNA-1:exon:1771;Parent=Msa1309090-mRNA-1
chr8_4 exon 5537067 5537156 5537067 ID=Msa1309090-mRNA-1:exon:1772;Parent=Msa1309090-mRNA-1
chr8_4 exon 5537244 5537271 5537244 ID=Msa1309090-mRNA-1:exon:1773;Parent=Msa1309090-mRNA-1
chr8_4 exon 5537680 5538204 5537680 ID=Msa1309090-mRNA-1:exon:1774;Parent=Msa1309090-mRNA-1
chr8_4 exon 5538296 5538357 5538296 ID=Msa1309090-mRNA-1:exon:1775;Parent=Msa1309090-mRNA-1
chr8_4 exon 5539291 5539400 5539291 ID=Msa1309090-mRNA-1:exon:1776;Parent=Msa1309090-mRNA-1
chr8_4 exon 5539474 5539561 5539474 ID=Msa1309090-mRNA-1:exon:1777;Parent=Msa1309090-mRNA-1
chr8_4 exon 5540303 5540848 5540303 ID=Msa1309090-mRNA-1:exon:1778;Parent=Msa1309090-mRNA-1
chr8_4 five_prime_UTR 5532770 5532906 5532770 ID=Msa1309090-mRNA-1:five_prime_utr;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5532907 5533237 5532907 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5533337 5533395 5533337 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5534254 5535588 5534254 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5535715 5535775 5535715 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5535860 5535922 5535860 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5536384 5536447 5536384 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5536528 5536621 5536528 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5536897 5536980 5536897 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5537067 5537156 5537067 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5537244 5537271 5537244 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5537680 5538204 5537680 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5538296 5538357 5538296 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5539291 5539400 5539291 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5539474 5539561 5539474 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 CDS 5540303 5540572 5540303 ID=Msa1309090-mRNA-1:cds;Parent=Msa1309090-mRNA-1
chr8_4 three_prime_UTR 5540573 5540848 5540573 ID=Msa1309090-mRNA-1:three_prime_utr;Parent=Msa1309090-mRNA-1
Gene Sequence

>Msa1309090

ATGTCTCCGCCGGAACCACCACCGCAACTCGCCGATCCAACTCCACTCCTCGAAGACCAATCCTGGCACCTCCTCTCTCTCCTCCTCCAGATCGGTCATCCCGTCGACGCGGAGTATCTTTCCCTTCGTTGCCGCTTCTTCAACGCTTCGCCGGATTTCGTCCGTCACGTTGCTTCACTTCCTGATTCTCCTCTCTCCGTTAACAGTAACGGATTTCTAACTCCTTCCGTTGAAGCTGCTTTCGCCATGGCTAGGTTTTTCTCATTTCAGTTCCAAAATTCAACTCCGTTTCACTCCCGTAAACGCAAGTCAATTTGCTCAATCACTCAAGGTGGAAGAGATCCGAAACGGCTTGCAATTGGTGATAAAGTTCCAGAAATTTTCGTTAAGAGTTTTGCTGATACTACTGCAGAGGCTGTTATGAGAAGAAATTTCTGTGCAATGAAATTTGAGTCTCGGATTGTAAATGGTGGGAATTATATGATTCCTATACGTATTGATTCAATTGGAGAATGTTCAGGTTGTTCAGAACCGAATTTAAAATACAGGGAAGCTGATAATGACGGCATAACAAGCATGGTCAAAGGAGAGATATCTGGCTCTCTTATCAAAGCCAATGAGAGTTTCTTCATTAGTGAAAGTGACTCGAGGAAGCTCGAGGGTCTAGATAGATTCGTGGGACATAATCCCTTTGCTAATCTTGCTCCACCAACTAGTGTCCAAGATCAATCTTTGTGTAATGATGATGTTGTTGGTATTGGATCAGAGGACAAAATGGATTGCTTTGACTCATTTGGGAATGAATATCCTGAACAAAACATAACCCCTACTGTGGATGGTGAAAAGGTTTGTCGAAATAATACTTGCAGAGATTCACTACTAGAATCTAATGAAATAAATAAAGAAGAGAAAAGAGGTCCAAAGGAAGGATTGGTTAATTATGAGAATGATAGAGAGATGGAAGATGTTGCTCAAAGGGTCGATCCTGTAGCATGCGGAGAAGATCCGACAGATGTTTTGGAATTGGAAAAGGGTATAATAAGAGAATCTATTGAAAAATATAAAGAGGAAAGAGGTTTGAAGGAAGGAATGATTAACTATGACAAAAATGAAGAGATGGAAGATGTTGCTCTGAGGATGAATCCTGTAGTATGTGGAGAAGAGCCAACAAAAGTTTTGGAATTGAAAAAGGGCATGCATGTATTAGATTTGGATACAAACAAGACAGTGAGAAAAATGGTGACCCGGTCTACAAATAAAATAGCTCAGTCCTCTTCAAATCCAAAGCAGCTTCTGAAACCTTCTCGCACATTGAAGGGGGGACAAAAAAATGATCTACACTCTAAGCCTCAAATTCTAACCGAGTCACTAGCCTGTAACAAATTTGATAATGTTCCAAAAAAAATTGATCAAAGTAATGATCAGAACATTATTGAAGGTGATGAAGGTAAGGATCAGAACATGGTGACCCAGTCTAACAATAAAGTAGCTCAGCCCTCTTCAAATCCAAAGCAGCTTCTGAAATCTTCTCGCATGTTGAAGGATGGACAGAAACATGATCTACACTCAAAGACTCAAAATCTAACTGAGTCACTAGCGTGTAACAAATCTGATAATGTTCCAAAAAAAATTGATCAAGGTCATGATCAGAGTATTATTTCAAAAAACAAAATAAAACAAAGTCGTAAAGAAAACGCGACAGAAGATAACTTCATGACTTCTAAGGTAGAGAAAAAAACATTTCCATCTTTTGAATCTTTTATAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCATTGTTTACCGTGCTCATAGAACAACTGATGGAAAAAGACTTGCTATAAAATGTCCTCATAGCAATGCTCATAAAAACCATGTAAATAATGAGCGGAATATGCTTGAGCGTTTTGGGGGTAAAAACTGTATTATAAAGTTTGAAGGTTCTTTCAAAAGTGGCAACAGTGACTGCTTTGTTTTAGAACATGTTGAGCATGAGAGACCTGAGGTTTTGAAAAAAGAAATTGATATATGTGAGCTTCAGTGGTATGGGTTTTGCATGTTCAAGGCACTTGCGTGCTTGCACAAAGAGGGAGTTGTTCACAGAGATGTTAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTAAAGAAAGGCTACCTTATCGACTTCAACCTTGCCATGGATTTGAAGCAGAAGTACAACATCGGAAGTAAATCAAAACCAAGGCTTGATGCATCCAGTAATATTCCTCTCCCGTCTGGTTCTTCCCCTGTGGTCCAAGACAAGAATCTTGGAGGAATCAAGGCTCTAACATCCAATAAAAGGGAATTGCCAGATCTGGCAGATCGTAGGAAATATTATGAAATTCGTAAGCATATGAAGGCAAAAGCGGATGCTGGTCATCTGAAAAATTGTCCCGATAAGGCTGTTGCGAATTTACGTAGAGCACAAGGAGCAGATGGCTCGGGTATAACCTCTGCCAGAGATGTTACTAGCACTAAGACTGCTTCTGCCGATAGGCTCCGAGAACCCATACCTTTCAAAGGAAGAAAGGAGCTTATCAGCCTCGTGCAGAATTCTATGCAATGTGCAAACAATAGTTCAATGAAAAGTCCTTCTTCTCAGAGGAAAAGGGTTACTGCTCCTTCAGGCAAGGTAGATGGCAGGACGCTTTATCTTACGCCAATGCCTATACATTCATCTACGGTTGCTTTGGGGTTATTAAGAAGCAAAGGGGACGGAAAACATAAAAGAGAGGGTCCATGTGTTGGAACAAAGGGTTTCCGTGCCCCGGAGGTTTTGTTCAGATCTCAGTTTCAGGGCCCTAAGGTTGATATTTGGTCGGCTGGAGTCACTCTACTATACATGCTGATTGGGAAAACTTCTTTCCCTGGCGAACCAGAACAGAGTTTAAAAGAAATTGCCAAATTGCGGGGCAGTGAAGAGCTTTGGGAGGTGGCCAAGCTGCATGACCGTGAAACATCCTTTCCAGTGGAGTTATTTGATGACCGATACTTGCAATCATATGACATAGAAACCTGGTGCAAGTTGCACACAAAGAGACCAGAGTTTGTTGATAAAGTCCCGAAATCATTGTTTGATTTAATAGAGAAGTGCCTAACAGTAAACCCAAGGAATAGGATTAGTGTTGAAGATGTTCTCAGGCATGAGTTTTTTGCCTCGTGTAATGAGATCATGAGAAAGACAAGGATGCTTCAACGAGGTCTTGGCTTAGAAACTGCAGCAGATTCAAGAGCAGTCTGA
Protein sequence

>Msa1309090

MSPPEPPPQLADPTPLLEDQSWHLLSLLLQIGHPVDAEYLSLRCRFFNASPDFVRHVASLPDSPLSVNSNGFLTPSVEAAFAMARFFSFQFQNSTPFHSRKRKSICSITQGGRDPKRLAIGDKVPEIFVKSFADTTAEAVMRRNFCAMKFESRIVNGGNYMIPIRIDSIGECSGCSEPNLKYREADNDGITSMVKGEISGSLIKANESFFISESDSRKLEGLDRFVGHNPFANLAPPTSVQDQSLCNDDVVGIGSEDKMDCFDSFGNEYPEQNITPTVDGEKVCRNNTCRDSLLESNEINKEEKRGPKEGLVNYENDREMEDVAQRVDPVACGEDPTDVLELEKGIIRESIEKYKEERGLKEGMINYDKNEEMEDVALRMNPVVCGEEPTKVLELKKGMHVLDLDTNKTVRKMVTRSTNKIAQSSSNPKQLLKPSRTLKGGQKNDLHSKPQILTESLACNKFDNVPKKIDQSNDQNIIEGDEGKDQNMVTQSNNKVAQPSSNPKQLLKSSRMLKDGQKHDLHSKTQNLTESLACNKSDNVPKKIDQGHDQSIISKNKIKQSRKENATEDNFMTSKVEKKTFPSFESFIIEEEEGSGGYGIVYRAHRTTDGKRLAIKCPHSNAHKNHVNNERNMLERFGGKNCIIKFEGSFKSGNSDCFVLEHVEHERPEVLKKEIDICELQWYGFCMFKALACLHKEGVVHRDVKPGNFLFSRKLKKGYLIDFNLAMDLKQKYNIGSKSKPRLDASSNIPLPSGSSPVVQDKNLGGIKALTSNKRELPDLADRRKYYEIRKHMKAKADAGHLKNCPDKAVANLRRAQGADGSGITSARDVTSTKTASADRLREPIPFKGRKELISLVQNSMQCANNSSMKSPSSQRKRVTAPSGKVDGRTLYLTPMPIHSSTVALGLLRSKGDGKHKREGPCVGTKGFRAPEVLFRSQFQGPKVDIWSAGVTLLYMLIGKTSFPGEPEQSLKEIAKLRGSEELWEVAKLHDRETSFPVELFDDRYLQSYDIETWCKLHTKRPEFVDKVPKSLFDLIEKCLTVNPRNRISVEDVLRHEFFASCNEIMRKTRMLQRGLGLETAADSRAV*