AlfalfaGEDB | Msa0526660

M. sativa cultivar zhongmu-4 / Msa0526660

KEGG: -
GO: GO:0000976 GO:0001067 GO:0001158 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF13837.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526660	XP_003591003.1	95.915	563	16	5	1	562	1	557	0.0	1100

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526660	sp\|Q8H181\|GTL2_ARATH	40.917	589	240	19	1	512	1	558	4.70e-102	323

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526660	G7I6V9	95.915	563	16	5	1	562	1	557	0.0	1100

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0526660	TF	Trihelix

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0134130	Msa0526660	0.805968	1.032992e-49	-8.615850e-47
Msa0172330	Msa0526660	0.986278	2.957405e-166	-8.615850e-47
Msa0203160	Msa0526660	0.836559	8.716563e-57	-8.615850e-47
Msa0526660	Msa0526750	0.969492	3.346969e-130	-8.615850e-47
Msa0526660	Msa0747780	0.803923	2.764669e-49	-8.615850e-47
Msa0526660	Msa0777050	0.802126	6.505075e-49	-8.615850e-47
Msa0526660	Msa0854830	0.812322	4.493085e-51	-8.615850e-47
Msa0526660	Msa0873190	0.808462	3.060896e-50	-8.615850e-47
Msa0526660	Msa0905550	0.827932	1.190361e-54	-8.615850e-47
Msa0526660	Msa0937550	0.838627	2.570547e-57	-8.615850e-47

Showing 1 to 10 of 20 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526660	MtrunA17_Chr1g0190851	95.915	563	16	5	1	562	1	557	0.0	1100
Msa0526660	MtrunA17_Chr7g0273941	45.070	497	187	18	34	512	51	479	2.45e-110	338
Msa0526660	MtrunA17_Chr1g0201941	35.135	296	161	7	230	512	266	543	8.99e-48	176
Msa0526660	MtrunA17_Chr1g0201941	40.000	100	57	2	410	509	46	142	2.49e-16	82.4
Msa0526660	MtrunA17_Chr1g0201941	43.529	85	43	1	105	184	58	142	2.25e-14	76.3
Msa0526660	MtrunA17_Chr2g0290511	34.043	282	154	6	258	533	117	372	2.83e-37	142
Msa0526660	MtrunA17_Chr1g0201911	34.363	259	136	5	255	512	236	461	1.42e-34	137
Msa0526660	MtrunA17_Chr1g0201911	45.882	85	41	1	105	184	56	140	8.54e-15	77.4
Msa0526660	MtrunA17_Chr1g0201911	40.217	92	52	2	421	512	55	143	3.53e-14	75.5
Msa0526660	MtrunA17_Chr6g0463941	59.783	92	35	1	421	512	464	553	2.49e-27	116

Showing 1 to 10 of 18 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526660	AT5G28300.1	40.917	589	240	19	1	512	1	558	4.78e-103	323
Msa0526660	AT1G76890.2	38.806	268	130	4	246	512	252	486	4.99e-47	173
Msa0526660	AT1G76890.2	46.591	88	44	2	419	506	39	123	1.94e-16	83.2
Msa0526660	AT1G76890.2	45.783	83	40	1	105	182	42	124	3.92e-14	75.9
Msa0526660	AT1G76880.1	34.082	267	138	4	258	512	257	497	2.96e-37	146
Msa0526660	AT1G76880.1	39.048	105	61	2	419	523	59	160	4.08e-15	79.0
Msa0526660	AT1G76880.1	44.706	85	42	1	105	184	62	146	8.66e-13	71.6
Msa0526660	AT1G33240.3	57.778	90	36	1	421	510	435	522	3.26e-26	113
Msa0526660	AT1G33240.3	43.820	89	47	2	421	509	62	147	4.80e-17	85.1
Msa0526660	AT1G33240.3	45.882	85	41	1	105	184	63	147	1.95e-16	83.2

Showing 1 to 10 of 18 entries

Previous1 2Next

Find 127 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGTGCAAAGAGAAGT+GGG	0.586402	3_4:+80652380	Msa0526660:CDS
AAAGGAGGGAAAGTATTGTT+TGG	0.461893	3_4:-80650650	None:intergenic
AAATCTAGTTGAGGCTGAAA+AGG	0.460400	3_4:+80651555	Msa0526660:CDS
AACAACAATGAAGAAAAGGA+AGG	0.621045	3_4:+80652282	Msa0526660:CDS
AACCAAGATGGTGCTGGTGC+AGG	0.525566	3_4:+80652606	Msa0526660:CDS
AAGAAGGAAGGGTTGAGCTA+GGG	0.460441	3_4:-80652119	None:intergenic
AAGAGGTTTATCAAGGTGGT+GGG	0.581021	3_4:+80651518	Msa0526660:CDS
AAGTAGTAGAAGAAGAAGGA+AGG	0.534716	3_4:-80652131	None:intergenic
AAGTTCTTGGAGTTATGAAT+TGG	0.444089	3_4:-80650583	None:intergenic
AATCATAATCAAAATAGTTT+TGG	0.326250	3_4:+80651466	Msa0526660:CDS

Showing 1 to 10 of 127 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAATAGATAGAGAGAA+GGG	+	chr3_4:80650388-80650407	Msa0526660:five_prime_UTR	30.0%
CAAAGGAATTGAATAGAAGA+AGG	+	chr3_4:80650472-80650491	Msa0526660:five_prime_UTR	30.0%
AAGTTCTTGGAGTTATGAAT+TGG	-	chr3_4:80650586-80650605	None:intergenic	30.0%
GATTATAAGGATCAAAAGGA+GGG	-	chr3_4:80650667-80650686	None:intergenic	30.0%
TGATTATAAGGATCAAAAGG+AGG	-	chr3_4:80650668-80650687	None:intergenic	30.0%
TTATCTTCATCATCTTTGTG+GGG	-	chr3_4:80650761-80650780	None:intergenic	30.0%
CTTATCTTCATCATCTTTGT+GGG	-	chr3_4:80650762-80650781	None:intergenic	30.0%
ATTTGGAAGTTGTTCATTGA+AGG	-	chr3_4:80650803-80650822	None:intergenic	30.0%
GTCTTTGATCTCTTTCAATT+TGG	-	chr3_4:80650820-80650839	None:intergenic	30.0%
TGATTAAATGGATGAAGTGA+AGG	-	chr3_4:80650991-80651010	None:intergenic	30.0%

Showing 1 to 10 of 157 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	80650382	80653037	80650382	ID=Msa0526660;Name=Msa0526660
chr3_4	mRNA	80650382	80653037	80650382	ID=Msa0526660-mRNA-1;Parent=Msa0526660;Name=Msa0526660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=172\|1\|1\|1\|1\|1\|2\|375\|562
chr3_4	exon	80650382	80650954	80650382	ID=Msa0526660-mRNA-1:exon:24232;Parent=Msa0526660-mRNA-1
chr3_4	exon	80651375	80653037	80651375	ID=Msa0526660-mRNA-1:exon:24233;Parent=Msa0526660-mRNA-1
chr3_4	five_prime_UTR	80650382	80650553	80650382	ID=Msa0526660-mRNA-1:five_prime_utr;Parent=Msa0526660-mRNA-1
chr3_4	CDS	80650554	80650954	80650554	ID=Msa0526660-mRNA-1:cds;Parent=Msa0526660-mRNA-1
chr3_4	CDS	80651375	80652662	80651375	ID=Msa0526660-mRNA-1:cds;Parent=Msa0526660-mRNA-1
chr3_4	three_prime_UTR	80652663	80653037	80652663	ID=Msa0526660-mRNA-1:three_prime_utr;Parent=Msa0526660-mRNA-1

Gene Sequence

>Msa0526660

ATGTATGATGGAGTCCCTGACCAATTCCACCAATTCATAACTCCAAGAACTTCTTCATCATCACTTCCTCTTCACTTACCTTTCCCTCTTTCAACACCAAACAATACTTTCCCTCCTTTTGATCCTTATAATCAACAAAACCACCCTTCTCAACATCACCAATTACCTCTCCAAGTTCAACCTAATCTCTTGCACCCTTTACACCCCCACAAAGATGATGAAGATAAGGAACAAAACTCTACTACACCTTCAATGAACAACTTCCAAATTGAAAGAGATCAAAGACAAATACTTCCTCAACTCATTGATCCTTGGACTAATGATGAAGTTCTTGCACTTTTGAAGATCAGATCCAGCATGGAGAGTTGGTTCCCAGATTTCACTTGGGAACATGTCTCAAGGAAGCTAGCTGACGTTGGTTATAAACGTAGTGCTGAAAAATGCAAGGAAAAATTTGAAGAAGAAAGCAGATTCTTCAACAACATTAATAATAATCATAATCAAAATAGTTTTGGTAAGAATTTTAGGTTTGTTACTGAGCTGGAAGAGGTTTATCAAGGTGGTGGGGGTGAGAATAACAAAAATCTAGTTGAGGCTGAAAAGGCGAACGAGGTGCAAGACAAAATGGACCCTCGTGTAGAGGAGGATTCAAGAATGGATGATGTATTGGTGTCAAAGAAAAGTGAAGAAGAGGTAGTTGAGAAAGGTACTACAAATGATGAGAAGAAGAGGAAAAGATCAGGTGATGATAGATTTGAAGTGTTTAAGGGTTTTTGTGAGAGTGTGGTGAAGAAAATGATGGATCAACAAGAAGAAATGCACAACAAGCTTATTGAAGATATGATTAAAAGAGATGAAGAGAAGTTTAGTAGAGAAGAAGCTTGGAAGAAACAAGAGATGGAGAAAATGAACAAAGAGCTTGAGTTGATGGCACATGAACAAGCTATTGCTGGTGATAGACAATCACATATAATTCAATTCTTGAACAAATTCTCAACAAGTGCTAATTCTTCTTCCTTAGCTTCAATGTCATCTTCACTTCAAGCTTATTTAGCAACATTAACTTCAAACTCTTCTTCTACATTGCACTCACAAAACCCTAATCCGGAAACTCTTGAAAAAACTCTTCAACCAATACCTGTAAACCCTAGCTCAACCCTTCCTTCTTCTTCTACTACTTTGGTGGCTCAGCCTCGCAAGAACAACCCTATTTCTTCATATAGCCTTATATCGAGCAGCGAGAGAGACGATATTGGTAGAAGATGGCCAAAAGATGAAGTGTTGGCATTGATAAACTTGAGGTGCAACAACAACAATGAAGAAAAGGAAGGAAATAGCAACAACAAGGCACCACTTTGGGAGAGAATTTCACAAGGAATGTTGGAGTTAGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAATATAAACAAGTACTTCAGAAAAACAAAGGATGCTAATAGGAAAAGGTCACTTGATTCAAGAACTTGTCCTTACTTTCATCTATTGAGCAATCTTTATAATCAAGGTAAGCTTGTTCTTCAATCTGATCAAAAGCAAGAAAGCAATAACGTGAATGTGGCTGAAGAAAATGTGGTTCAAGAGAAAGCAACACAAGATGAAAACCAAGATGGTGCTGGTGCAGGTGAGTCTTCTCAAGTGGGGCCTCCAAGCTGGTAA

Protein sequence

>Msa0526660

MYDGVPDQFHQFITPRTSSSSLPLHLPFPLSTPNNTFPPFDPYNQQNHPSQHHQLPLQVQPNLLHPLHPHKDDEDKEQNSTTPSMNNFQIERDQRQILPQLIDPWTNDEVLALLKIRSSMESWFPDFTWEHVSRKLADVGYKRSAEKCKEKFEEESRFFNNINNNHNQNSFGKNFRFVTELEEVYQGGGGENNKNLVEAEKANEVQDKMDPRVEEDSRMDDVLVSKKSEEEVVEKGTTNDEKKRKRSGDDRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKFSREEAWKKQEMEKMNKELELMAHEQAIAGDRQSHIIQFLNKFSTSANSSSLASMSSSLQAYLATLTSNSSSTLHSQNPNPETLEKTLQPIPVNPSSTLPSSSTTLVAQPRKNNPISSYSLISSSERDDIGRRWPKDEVLALINLRCNNNNEEKEGNSNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSDQKQESNNVNVAEENVVQEKATQDENQDGAGAGESSQVGPPSW*