Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172330 | XP_003591003.1 | 96.092 | 563 | 15 | 5 | 1 | 562 | 1 | 557 | 0.0 | 1104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172330 | sp|Q8H181|GTL2_ARATH | 40.917 | 589 | 240 | 19 | 1 | 512 | 1 | 558 | 4.09e-102 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172330 | G7I6V9 | 96.092 | 563 | 15 | 5 | 1 | 562 | 1 | 557 | 0.0 | 1104 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0172330 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0134130 | Msa0172330 | 0.810840 | 9.435238e-51 | -8.615850e-47 |
| Msa0172330 | Msa0203160 | 0.841461 | 4.685960e-58 | -8.615850e-47 |
| Msa0172330 | Msa0219190 | 0.802928 | 4.445009e-49 | -8.615850e-47 |
| Msa0172330 | Msa0464630 | 0.801648 | 8.152515e-49 | -8.615850e-47 |
| Msa0172330 | Msa0526660 | 0.986278 | 2.957405e-166 | -8.615850e-47 |
| Msa0172330 | Msa0526750 | 0.952691 | 1.402328e-110 | -8.615850e-47 |
| Msa0172330 | Msa0650090 | 0.812233 | 4.699239e-51 | -8.615850e-47 |
| Msa0172330 | Msa0747780 | 0.805919 | 1.057906e-49 | -8.615850e-47 |
| Msa0172330 | Msa0777050 | 0.829324 | 5.487161e-55 | -8.615850e-47 |
| Msa0172330 | Msa0787750 | 0.817455 | 3.268216e-52 | -8.615850e-47 |
| Msa0172330 | Msa0810020 | 0.805129 | 1.549347e-49 | -8.615850e-47 |
| Msa0172330 | Msa0833040 | 0.800345 | 1.505211e-48 | -8.615850e-47 |
| Msa0172330 | Msa0854830 | 0.823851 | 1.108456e-53 | -8.615850e-47 |
| Msa0172330 | Msa0862100 | 0.806509 | 7.948799e-50 | -8.615850e-47 |
| Msa0172330 | Msa0872310 | 0.805810 | 1.115138e-49 | -8.615850e-47 |
| Msa0172330 | Msa0873190 | 0.801032 | 1.090437e-48 | -8.615850e-47 |
| Msa0172330 | Msa0885060 | 0.800199 | 1.612396e-48 | -8.615850e-47 |
| Msa0172330 | Msa0905550 | 0.830540 | 2.773221e-55 | -8.615850e-47 |
| Msa0172330 | Msa0937550 | 0.841005 | 6.177114e-58 | -8.615850e-47 |
| Msa0172330 | Msa0974750 | 0.812380 | 4.364596e-51 | -8.615850e-47 |
| Msa0172330 | Msa1018790 | 0.814880 | 1.229494e-51 | -8.615850e-47 |
| Msa0172330 | Msa1041530 | 0.829610 | 4.674723e-55 | -8.615850e-47 |
| Msa0172330 | Msa1061500 | 0.817391 | 3.379753e-52 | -8.615850e-47 |
| Msa0172330 | Msa1081570 | 0.822480 | 2.316354e-53 | -8.615850e-47 |
| Msa0172330 | Msa1123880 | 0.801902 | 7.231620e-49 | -8.615850e-47 |
| Msa0172330 | Msa1126510 | 0.807445 | 5.036867e-50 | -8.615850e-47 |
| Msa0172330 | Msa1127140 | 0.820369 | 7.114988e-53 | -8.615850e-47 |
| Msa0172330 | Msa1150970 | 0.816024 | 6.845200e-52 | -8.615850e-47 |
| Msa0172330 | Msa1166400 | 0.808326 | 3.271685e-50 | -8.615850e-47 |
| Msa0172330 | Msa1228610 | 0.801935 | 7.119634e-49 | -8.615850e-47 |
| Msa0172330 | Msa1249870 | 0.803134 | 4.030498e-49 | -8.615850e-47 |
| Msa0172330 | Msa1367880 | 0.803851 | 2.861972e-49 | -8.615850e-47 |
| Msa0172330 | Msa1390270 | 0.978048 | 5.117226e-145 | -8.615850e-47 |
| Msa0172330 | Msa1420060 | 0.840189 | 1.010015e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172330 | MtrunA17_Chr1g0190851 | 96.092 | 563 | 15 | 5 | 1 | 562 | 1 | 557 | 0.0 | 1104 |
| Msa0172330 | MtrunA17_Chr7g0273941 | 45.070 | 497 | 187 | 18 | 34 | 512 | 51 | 479 | 3.42e-110 | 337 |
| Msa0172330 | MtrunA17_Chr1g0201941 | 35.135 | 296 | 161 | 7 | 230 | 512 | 266 | 543 | 7.90e-48 | 176 |
| Msa0172330 | MtrunA17_Chr1g0201941 | 40.000 | 100 | 57 | 2 | 410 | 509 | 46 | 142 | 2.42e-16 | 82.4 |
| Msa0172330 | MtrunA17_Chr1g0201941 | 43.529 | 85 | 43 | 1 | 105 | 184 | 58 | 142 | 2.19e-14 | 76.3 |
| Msa0172330 | MtrunA17_Chr2g0290511 | 34.043 | 282 | 154 | 6 | 258 | 533 | 117 | 372 | 2.72e-37 | 142 |
| Msa0172330 | MtrunA17_Chr1g0201911 | 34.363 | 259 | 136 | 5 | 255 | 512 | 236 | 461 | 1.33e-34 | 137 |
| Msa0172330 | MtrunA17_Chr1g0201911 | 45.882 | 85 | 41 | 1 | 105 | 184 | 56 | 140 | 8.17e-15 | 77.4 |
| Msa0172330 | MtrunA17_Chr1g0201911 | 40.217 | 92 | 52 | 2 | 421 | 512 | 55 | 143 | 3.44e-14 | 75.5 |
| Msa0172330 | MtrunA17_Chr6g0463941 | 59.783 | 92 | 35 | 1 | 421 | 512 | 464 | 553 | 2.26e-27 | 116 |
| Msa0172330 | MtrunA17_Chr6g0463941 | 40.860 | 93 | 52 | 2 | 419 | 511 | 53 | 142 | 1.07e-15 | 80.5 |
| Msa0172330 | MtrunA17_Chr6g0463941 | 42.353 | 85 | 44 | 1 | 105 | 184 | 56 | 140 | 2.64e-14 | 75.9 |
| Msa0172330 | MtrunA17_Chr7g0265831 | 27.985 | 268 | 162 | 7 | 105 | 346 | 116 | 378 | 4.41e-20 | 93.6 |
| Msa0172330 | MtrunA17_Chr7g0265831 | 39.785 | 93 | 52 | 3 | 421 | 512 | 115 | 204 | 1.49e-12 | 70.1 |
| Msa0172330 | MtrunA17_Chr1g0179191 | 29.707 | 239 | 149 | 7 | 105 | 328 | 132 | 366 | 1.78e-18 | 88.6 |
| Msa0172330 | MtrunA17_Chr1g0179191 | 39.785 | 93 | 52 | 3 | 421 | 512 | 131 | 220 | 1.69e-12 | 70.1 |
| Msa0172330 | MtrunA17_Chr1g0198171 | 35.294 | 136 | 75 | 4 | 384 | 509 | 68 | 200 | 1.99e-15 | 79.0 |
| Msa0172330 | MtrunA17_Chr1g0198171 | 23.907 | 389 | 219 | 14 | 4 | 330 | 6 | 379 | 2.33e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172330 | AT5G28300.1 | 40.917 | 589 | 240 | 19 | 1 | 512 | 1 | 558 | 4.16e-103 | 324 |
| Msa0172330 | AT1G76890.2 | 38.806 | 268 | 130 | 4 | 246 | 512 | 252 | 486 | 4.52e-47 | 174 |
| Msa0172330 | AT1G76890.2 | 46.591 | 88 | 44 | 2 | 419 | 506 | 39 | 123 | 1.80e-16 | 83.2 |
| Msa0172330 | AT1G76890.2 | 45.783 | 83 | 40 | 1 | 105 | 182 | 42 | 124 | 3.66e-14 | 75.9 |
| Msa0172330 | AT1G76880.1 | 34.082 | 267 | 138 | 4 | 258 | 512 | 257 | 497 | 2.76e-37 | 146 |
| Msa0172330 | AT1G76880.1 | 39.048 | 105 | 61 | 2 | 419 | 523 | 59 | 160 | 4.30e-15 | 79.0 |
| Msa0172330 | AT1G76880.1 | 44.706 | 85 | 42 | 1 | 105 | 184 | 62 | 146 | 8.51e-13 | 71.6 |
| Msa0172330 | AT1G33240.3 | 57.778 | 90 | 36 | 1 | 421 | 510 | 435 | 522 | 3.20e-26 | 113 |
| Msa0172330 | AT1G33240.3 | 43.820 | 89 | 47 | 2 | 421 | 509 | 62 | 147 | 4.68e-17 | 85.1 |
| Msa0172330 | AT1G33240.3 | 45.882 | 85 | 41 | 1 | 105 | 184 | 63 | 147 | 1.93e-16 | 83.2 |
| Msa0172330 | AT1G33240.2 | 57.778 | 90 | 36 | 1 | 421 | 510 | 396 | 483 | 3.38e-26 | 113 |
| Msa0172330 | AT1G33240.1 | 57.778 | 90 | 36 | 1 | 421 | 510 | 435 | 522 | 4.27e-26 | 113 |
| Msa0172330 | AT1G33240.1 | 43.820 | 89 | 47 | 2 | 421 | 509 | 62 | 147 | 4.92e-17 | 85.1 |
| Msa0172330 | AT1G33240.1 | 45.882 | 85 | 41 | 1 | 105 | 184 | 63 | 147 | 2.65e-16 | 82.8 |
| Msa0172330 | AT5G47660.1 | 33.209 | 268 | 131 | 12 | 243 | 510 | 169 | 388 | 2.38e-19 | 90.9 |
| Msa0172330 | AT3G10000.1 | 40.000 | 95 | 54 | 2 | 421 | 514 | 88 | 180 | 1.39e-14 | 76.6 |
| Msa0172330 | AT5G03680.1 | 42.857 | 91 | 48 | 3 | 421 | 510 | 119 | 206 | 1.48e-13 | 73.9 |
| Msa0172330 | AT3G10000.2 | 36.170 | 94 | 49 | 2 | 421 | 514 | 88 | 170 | 9.42e-12 | 67.8 |
Find 127 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGATTTGAAGTGTTTA+AGG | 0.195477 | 1_4:+57342504 | Msa0172330:CDS |
| GTCTTTGATCTCTTTCAATT+TGG | 0.216907 | 1_4:-57341601 | None:intergenic |
| ATAAGGCTATATGAAGAAAT+AGG | 0.236435 | 1_4:-57342964 | None:intergenic |
| CTCTCTCGCTGCTCGATATA+AGG | 0.299308 | 1_4:-57342981 | None:intergenic |
| GTTGAACTTGGAGAGGTAAT+TGG | 0.302988 | 1_4:-57341496 | None:intergenic |
| TCCTTCTTCTTCTACTACTT+TGG | 0.306363 | 1_4:+57342918 | Msa0172330:CDS |
| CCTTATCTTCATCATCTTTG+TGG | 0.317408 | 1_4:-57341544 | None:intergenic |
| AATGCCAACACTTCATCTTT+TGG | 0.317647 | 1_4:-57343024 | None:intergenic |
| AATCATAATCAAAATAGTTT+TGG | 0.326250 | 1_4:+57342250 | Msa0172330:CDS |
| CTTATCTTCATCATCTTTGT+GGG | 0.336037 | 1_4:-57341543 | None:intergenic |
| AGGGTTGAGCTAGGGTTTAC+AGG | 0.337022 | 1_4:-57342895 | None:intergenic |
| TTTCAAGAGTTTCCGGATTA+GGG | 0.337138 | 1_4:-57342855 | None:intergenic |
| TCACAAGGAATGTTGGAGTT+AGG | 0.345818 | 1_4:+57343126 | Msa0172330:CDS |
| ACATGTTCCCAAGTGAAATC+TGG | 0.352061 | 1_4:-57341710 | None:intergenic |
| GAACGAGGTGCAAGACAAAA+TGG | 0.355649 | 1_4:+57342363 | Msa0172330:CDS |
| TATATGCAGCAGGTTCATTA+TGG | 0.361159 | 1_4:+57343453 | Msa0172330:three_prime_UTR |
| GAACAAAGAGCTTGAGTTGA+TGG | 0.361917 | 1_4:+57342666 | Msa0172330:CDS |
| GAGCTAGGGTTTACAGGTAT+TGG | 0.369227 | 1_4:-57342889 | None:intergenic |
| GATAGATTTGAAGTGTTTAA+GGG | 0.370463 | 1_4:+57342505 | Msa0172330:CDS |
| AGCAGCGAGAGAGACGATAT+TGG | 0.377007 | 1_4:+57342991 | Msa0172330:CDS |
| AGTGATGATGAAGAAGTTCT+TGG | 0.378048 | 1_4:-57341380 | None:intergenic |
| GAAGAAGGAAGGGTTGAGCT+AGG | 0.386310 | 1_4:-57342904 | None:intergenic |
| CAACAACAAGGCACCACTTT+GGG | 0.393210 | 1_4:+57343095 | Msa0172330:CDS |
| ATGAATTGGTGGAATTGGTC+AGG | 0.408406 | 1_4:-57341353 | None:intergenic |
| TTCTTCTTCTACTACTTTGG+TGG | 0.410965 | 1_4:+57342921 | Msa0172330:CDS |
| AGTTTAGTAGAGAAGAAGCT+TGG | 0.425700 | 1_4:+57342620 | Msa0172330:CDS |
| TTGAGCAATCTTTATAATCA+AGG | 0.426028 | 1_4:+57343273 | Msa0172330:CDS |
| GAGTTATGAATTGGTGGAAT+TGG | 0.428139 | 1_4:-57341358 | None:intergenic |
| GAGAAGAAGAGGAAAAGATC+AGG | 0.430204 | 1_4:+57342478 | Msa0172330:CDS |
| ATAGATAGAGAGAAGGGTAG+AGG | 0.436646 | 1_4:+57341176 | Msa0172330:five_prime_UTR |
| TAAGGCTATATGAAGAAATA+GGG | 0.437015 | 1_4:-57342963 | None:intergenic |
| GAGAATTTCACAAGGAATGT+TGG | 0.441400 | 1_4:+57343119 | Msa0172330:CDS |
| AAGTTCTTGGAGTTATGAAT+TGG | 0.444089 | 1_4:-57341367 | None:intergenic |
| ATTTGGAAGTTGTTCATTGA+AGG | 0.451783 | 1_4:-57341584 | None:intergenic |
| TTCCTCAACTCATTGATCCT+TGG | 0.453786 | 1_4:+57341630 | Msa0172330:CDS |
| CAACAACAACAATGAAGAAA+AGG | 0.456418 | 1_4:+57343062 | Msa0172330:CDS |
| TGTTGATTATAAGGATCAAA+AGG | 0.457871 | 1_4:-57341452 | None:intergenic |
| CACCTGCACCAGCACCATCT+TGG | 0.460031 | 1_4:-57343392 | None:intergenic |
| AAATCTAGTTGAGGCTGAAA+AGG | 0.460400 | 1_4:+57342339 | Msa0172330:CDS |
| AAGAAGGAAGGGTTGAGCTA+GGG | 0.460441 | 1_4:-57342903 | None:intergenic |
| AAAGGAGGGAAAGTATTGTT+TGG | 0.461893 | 1_4:-57341434 | None:intergenic |
| TTGCTCAATAGATGAAAGTA+AGG | 0.463276 | 1_4:-57343258 | None:intergenic |
| GCAAGAGATTAGGTTGAACT+TGG | 0.468930 | 1_4:-57341508 | None:intergenic |
| CAGAGAAATAGATAGAGAGA+AGG | 0.470696 | 1_4:+57341169 | Msa0172330:five_prime_UTR |
| TAGATAGAGAGAAGGGTAGA+GGG | 0.472756 | 1_4:+57341177 | Msa0172330:five_prime_UTR |
| TGTAAAGGGTGCAAGAGATT+AGG | 0.478381 | 1_4:-57341518 | None:intergenic |
| TTCTTGGAGTTATGAATTGG+TGG | 0.479434 | 1_4:-57341364 | None:intergenic |
| GAGGTTTATCAAGGTGGTGG+GGG | 0.479843 | 1_4:+57342304 | Msa0172330:CDS |
| AGAGAAATAGATAGAGAGAA+GGG | 0.480380 | 1_4:+57341170 | Msa0172330:five_prime_UTR |
| CCACAAAGATGATGAAGATA+AGG | 0.480738 | 1_4:+57341544 | Msa0172330:CDS |
| CTCAAGTGGGGCCTCCAAGC+TGG | 0.484767 | 1_4:+57343421 | Msa0172330:CDS |
| TTCAAGAATGGATGATGTAT+TGG | 0.485834 | 1_4:+57342405 | Msa0172330:CDS |
| CAAAGGATGCTAATAGGAAA+AGG | 0.488346 | 1_4:+57343214 | Msa0172330:CDS |
| GCAACAACAAGGCACCACTT+TGG | 0.490808 | 1_4:+57343094 | Msa0172330:CDS |
| GTCAAAGAAAAGTGAAGAAG+AGG | 0.493141 | 1_4:+57342429 | Msa0172330:CDS |
| TATTGTTTGGTGTTGAAAGA+GGG | 0.496288 | 1_4:-57341421 | None:intergenic |
| TGAAGATGACATTGAAGCTA+AGG | 0.499602 | 1_4:-57342773 | None:intergenic |
| CAAAGGAATTGAATTGAAGA+AGG | 0.502558 | 1_4:+57341254 | Msa0172330:five_prime_UTR |
| GAAGAAGAGGTAGTTGAGAA+AGG | 0.502624 | 1_4:+57342442 | Msa0172330:CDS |
| GTAATTTCACTATATGCAGC+AGG | 0.504977 | 1_4:+57343443 | Msa0172330:exon |
| GCACATGAACAAGCTATTGC+TGG | 0.507249 | 1_4:+57342688 | Msa0172330:CDS |
| CAAAACACAAACATGTATGA+TGG | 0.510594 | 1_4:+57341326 | Msa0172330:exon |
| CATGTTCCCAAGTGAAATCT+GGG | 0.514235 | 1_4:-57341709 | None:intergenic |
| GCAGGTGAGTCTTCTCAAGT+GGG | 0.514949 | 1_4:+57343408 | Msa0172330:CDS |
| GTTGGTTCCCAGATTTCACT+TGG | 0.516402 | 1_4:+57341702 | Msa0172330:CDS |
| GCACTCACAAAACCCTAATC+CGG | 0.519084 | 1_4:+57342843 | Msa0172330:CDS |
| GAAGAGGTTTATCAAGGTGG+TGG | 0.520513 | 1_4:+57342301 | Msa0172330:CDS |
| TTATCTTCATCATCTTTGTG+GGG | 0.521990 | 1_4:-57341542 | None:intergenic |
| AGAGGGAAAGGTAAGTGAAG+AGG | 0.522502 | 1_4:-57341404 | None:intergenic |
| AACCAAGATGGTGCTGGTGC+AGG | 0.525566 | 1_4:+57343390 | Msa0172330:CDS |
| GTTTGTTACTGAGCTGGAAG+AGG | 0.529219 | 1_4:+57342285 | Msa0172330:CDS |
| TGCAGGTGAGTCTTCTCAAG+TGG | 0.532154 | 1_4:+57343407 | Msa0172330:CDS |
| AAGTAGTAGAAGAAGAAGGA+AGG | 0.534716 | 1_4:-57342915 | None:intergenic |
| TTTGGTGTTGAAAGAGGGAA+AGG | 0.535775 | 1_4:-57341416 | None:intergenic |
| GAGACGATATTGGTAGAAGA+TGG | 0.544390 | 1_4:+57343001 | Msa0172330:CDS |
| TGGGAACCAACTCTCCATGC+TGG | 0.546340 | 1_4:-57341690 | None:intergenic |
| GTATTGTTTGGTGTTGAAAG+AGG | 0.549012 | 1_4:-57341422 | None:intergenic |
| CAAAGAGGTGCAAAGAGAAG+TGG | 0.549838 | 1_4:+57343163 | Msa0172330:CDS |
| TATCTTCATCATCTTTGTGG+GGG | 0.551544 | 1_4:-57341541 | None:intergenic |
| ATTGGTGATGTTGAGAAGGG+TGG | 0.552861 | 1_4:-57341478 | None:intergenic |
| TGTAGAGGAGGATTCAAGAA+TGG | 0.554166 | 1_4:+57342393 | Msa0172330:CDS |
| AGAGGTTTATCAAGGTGGTG+GGG | 0.556530 | 1_4:+57342303 | Msa0172330:CDS |
| TAGTGAAATTACCAGCTTGG+AGG | 0.560803 | 1_4:-57343432 | None:intergenic |
| TCAGATCCAGCATGGAGAGT+TGG | 0.563903 | 1_4:+57341684 | Msa0172330:CDS |
| CTACAAATGATGAGAAGAAG+AGG | 0.565637 | 1_4:+57342467 | Msa0172330:CDS |
| ATTTAATTTACAGTGAGCAA+AGG | 0.569142 | 1_4:+57341237 | Msa0172330:five_prime_UTR |
| ACCAAAGTAGTAGAAGAAGA+AGG | 0.573800 | 1_4:-57342919 | None:intergenic |
| ATGGCCAAAAGATGAAGTGT+TGG | 0.578682 | 1_4:+57343020 | Msa0172330:CDS |
| ATATCATCAAAATCCAAAGA+AGG | 0.579812 | 1_4:-57343502 | None:intergenic |
| AAGAGGTTTATCAAGGTGGT+GGG | 0.581021 | 1_4:+57342302 | Msa0172330:CDS |
| TGATTATAAGGATCAAAAGG+AGG | 0.583124 | 1_4:-57341449 | None:intergenic |
| GATTATAAGGATCAAAAGGA+GGG | 0.583546 | 1_4:-57341448 | None:intergenic |
| CTTGAATCCTCCTCTACATG+AGG | 0.583768 | 1_4:-57342388 | None:intergenic |
| AAAGAGGTGCAAAGAGAAGT+GGG | 0.586402 | 1_4:+57343164 | Msa0172330:CDS |
| GAGCTGGAAGAGGTTTATCA+AGG | 0.586678 | 1_4:+57342295 | Msa0172330:CDS |
| ATATAGTGAAATTACCAGCT+TGG | 0.588322 | 1_4:-57343435 | None:intergenic |
| TGAATTGGTGGAATTGGTCA+GGG | 0.590311 | 1_4:-57341352 | None:intergenic |
| AGTAGTAGAAGAAGAAGGAA+GGG | 0.592188 | 1_4:-57342914 | None:intergenic |
| GAGTGTGGTGAAGAAAATGA+TGG | 0.595280 | 1_4:+57342537 | Msa0172330:CDS |
| GGTAATTGGTGATGTTGAGA+AGG | 0.596580 | 1_4:-57341482 | None:intergenic |
| GTCCAAGGATCAATGAGTTG+AGG | 0.597929 | 1_4:-57341632 | None:intergenic |
| GAAATAGGGTTGTTCTTGCG+AGG | 0.598239 | 1_4:-57342949 | None:intergenic |
| TGTGAAATTCTCTCCCAAAG+TGG | 0.599247 | 1_4:-57343108 | None:intergenic |
| AGCTTGGAAGAAACAAGAGA+TGG | 0.599559 | 1_4:+57342636 | Msa0172330:CDS |
| AGATTAGGTTGAACTTGGAG+AGG | 0.605144 | 1_4:-57341503 | None:intergenic |
| TTTGAAGATCAGATCCAGCA+TGG | 0.607084 | 1_4:+57341676 | Msa0172330:CDS |
| CTTTGGGAGAGAATTTCACA+AGG | 0.610777 | 1_4:+57343111 | Msa0172330:CDS |
| CAAAATGGACCCTCATGTAG+AGG | 0.618548 | 1_4:+57342378 | Msa0172330:CDS |
| GATGAAAACCAAGATGGTGC+TGG | 0.618902 | 1_4:+57343384 | Msa0172330:CDS |
| TCACTTGGGAACATGTCTCA+AGG | 0.620742 | 1_4:+57341717 | Msa0172330:CDS |
| AACAACAATGAAGAAAAGGA+AGG | 0.621045 | 1_4:+57343066 | Msa0172330:CDS |
| AGAACTTCATCATTAGTCCA+AGG | 0.625382 | 1_4:-57341647 | None:intergenic |
| AGAAAGCAATAACGTGAATG+TGG | 0.625602 | 1_4:+57343326 | Msa0172330:CDS |
| CAGGTGAGTCTTCTCAAGTG+GGG | 0.628435 | 1_4:+57343409 | Msa0172330:CDS |
| TTGAATCCTCCTCTACATGA+GGG | 0.632417 | 1_4:-57342387 | None:intergenic |
| ATGCAGCAGGTTCATTATGG+AGG | 0.633386 | 1_4:+57343456 | Msa0172330:three_prime_UTR |
| TTGGTTCCCAGATTTCACTT+GGG | 0.635745 | 1_4:+57341703 | Msa0172330:CDS |
| CACAGGAAGCTAGCTGACGT+TGG | 0.645573 | 1_4:+57342154 | Msa0172330:intron |
| ACACAAGATGAAAACCAAGA+TGG | 0.647031 | 1_4:+57343378 | Msa0172330:CDS |
| GTAATTGGTGATGTTGAGAA+GGG | 0.648526 | 1_4:-57341481 | None:intergenic |
| AATGGACCCTCATGTAGAGG+AGG | 0.651973 | 1_4:+57342381 | Msa0172330:CDS |
| CTGGAAGAGGTTTATCAAGG+TGG | 0.657958 | 1_4:+57342298 | Msa0172330:CDS |
| TGAGGCTGAAAAGGCGAACG+AGG | 0.666720 | 1_4:+57342348 | Msa0172330:CDS |
| TGTTGGCATTGATAAACTTG+AGG | 0.669533 | 1_4:+57343037 | Msa0172330:CDS |
| GATACAAGAGAAGTGCAAAG+AGG | 0.678975 | 1_4:+57343148 | Msa0172330:CDS |
| GGAAGGAAATAGCAACAACA+AGG | 0.682423 | 1_4:+57343083 | Msa0172330:CDS |
| GAATGTGGCTGAAGAAAATG+TGG | 0.683811 | 1_4:+57343341 | Msa0172330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGGATTTAAATATTTA+CGG | + | chr1_4:57342127-57342146 | Msa0172330:intron | 10.0% |
| !! | TAGCTCATATTATTAATTAT+TGG | - | chr1_4:57341815-57341834 | None:intergenic | 15.0% |
| !!! | TCTATGATTAATTGTTTTTT+TGG | + | chr1_4:57342111-57342130 | Msa0172330:intron | 15.0% |
| !!! | AATCATAATCAAAATAGTTT+TGG | + | chr1_4:57342250-57342269 | Msa0172330:CDS | 15.0% |
| !!! | GATATGTGTTTTTTTTTTTT+TGG | + | chr1_4:57343702-57343721 | Msa0172330:three_prime_UTR | 15.0% |
| !! | TTGTTAATGACTTGATTAAA+TGG | - | chr1_4:57341787-57341806 | None:intergenic | 20.0% |
| !!! | TATTAAAAAAAGTATCCATG+TGG | + | chr1_4:57341925-57341944 | Msa0172330:intron | 20.0% |
| !!! | ATAGTTTTGGTAAGAATTTT+AGG | + | chr1_4:57342263-57342282 | Msa0172330:CDS | 20.0% |
| !!! | TGTTTTTTTTTTTTTGGTCA+AGG | + | chr1_4:57343708-57343727 | Msa0172330:three_prime_UTR | 20.0% |
| !! | ATTTAATTTACAGTGAGCAA+AGG | + | chr1_4:57341237-57341256 | Msa0172330:five_prime_UTR | 25.0% |
| !! | TGTTGATTATAAGGATCAAA+AGG | - | chr1_4:57341455-57341474 | None:intergenic | 25.0% |
| ! | TTAAGAAAAGAAGAAATTCG+TGG | - | chr1_4:57341872-57341891 | None:intergenic | 25.0% |
| !! | AATTCTGTTCCTTCAATTTT+TGG | - | chr1_4:57342030-57342049 | None:intergenic | 25.0% |
| ! | GAATAACAAAAATCTAGTTG+AGG | + | chr1_4:57342330-57342349 | Msa0172330:CDS | 25.0% |
| !! | TGATAGATTTGAAGTGTTTA+AGG | + | chr1_4:57342504-57342523 | Msa0172330:CDS | 25.0% |
| !! | GATAGATTTGAAGTGTTTAA+GGG | + | chr1_4:57342505-57342524 | Msa0172330:CDS | 25.0% |
| ! | TAAGGCTATATGAAGAAATA+GGG | - | chr1_4:57342966-57342985 | None:intergenic | 25.0% |
| ! | ATAAGGCTATATGAAGAAAT+AGG | - | chr1_4:57342967-57342986 | None:intergenic | 25.0% |
| ! | TTGAGCAATCTTTATAATCA+AGG | + | chr1_4:57343273-57343292 | Msa0172330:CDS | 25.0% |
| ! | ATATCATCAAAATCCAAAGA+AGG | - | chr1_4:57343505-57343524 | None:intergenic | 25.0% |
| AGAGAAATAGATAGAGAGAA+GGG | + | chr1_4:57341170-57341189 | Msa0172330:five_prime_UTR | 30.0% | |
| CAAAGGAATTGAATTGAAGA+AGG | + | chr1_4:57341254-57341273 | Msa0172330:five_prime_UTR | 30.0% | |
| CAAAACACAAACATGTATGA+TGG | + | chr1_4:57341326-57341345 | Msa0172330:exon | 30.0% | |
| AAGTTCTTGGAGTTATGAAT+TGG | - | chr1_4:57341370-57341389 | None:intergenic | 30.0% | |
| !! | TATTGTTTGGTGTTGAAAGA+GGG | - | chr1_4:57341424-57341443 | None:intergenic | 30.0% |
| GATTATAAGGATCAAAAGGA+GGG | - | chr1_4:57341451-57341470 | None:intergenic | 30.0% | |
| TGATTATAAGGATCAAAAGG+AGG | - | chr1_4:57341452-57341471 | None:intergenic | 30.0% | |
| TTATCTTCATCATCTTTGTG+GGG | - | chr1_4:57341545-57341564 | None:intergenic | 30.0% | |
| CTTATCTTCATCATCTTTGT+GGG | - | chr1_4:57341546-57341565 | None:intergenic | 30.0% | |
| ATTTGGAAGTTGTTCATTGA+AGG | - | chr1_4:57341587-57341606 | None:intergenic | 30.0% | |
| GTCTTTGATCTCTTTCAATT+TGG | - | chr1_4:57341604-57341623 | None:intergenic | 30.0% | |
| TGATTAAATGGATGAAGTGA+AGG | - | chr1_4:57341775-57341794 | None:intergenic | 30.0% | |
| GAAATAGGACCAAAAATTGA+AGG | + | chr1_4:57342018-57342037 | Msa0172330:intron | 30.0% | |
| TTCAAGAATGGATGATGTAT+TGG | + | chr1_4:57342405-57342424 | Msa0172330:CDS | 30.0% | |
| !!! | AGAGTTTTTTCAAGAGTTTC+CGG | - | chr1_4:57342865-57342884 | None:intergenic | 30.0% |
| CAACAACAACAATGAAGAAA+AGG | + | chr1_4:57343062-57343081 | Msa0172330:CDS | 30.0% | |
| AACAACAATGAAGAAAAGGA+AGG | + | chr1_4:57343066-57343085 | Msa0172330:CDS | 30.0% | |
| CAAGTACTTCAGAAAAACAA+AGG | + | chr1_4:57343197-57343216 | Msa0172330:CDS | 30.0% | |
| GAAAAACAAAGGATGCTAAT+AGG | + | chr1_4:57343208-57343227 | Msa0172330:CDS | 30.0% | |
| TTGCTCAATAGATGAAAGTA+AGG | - | chr1_4:57343261-57343280 | None:intergenic | 30.0% | |
| ATATAGTGAAATTACCAGCT+TGG | - | chr1_4:57343438-57343457 | None:intergenic | 30.0% | |
| ! | TTTTATGCATGTACCTTCTT+TGG | + | chr1_4:57343489-57343508 | Msa0172330:three_prime_UTR | 30.0% |
| CAGAGAAATAGATAGAGAGA+AGG | + | chr1_4:57341169-57341188 | Msa0172330:five_prime_UTR | 35.0% | |
| GAGTTATGAATTGGTGGAAT+TGG | - | chr1_4:57341361-57341380 | None:intergenic | 35.0% | |
| TTCTTGGAGTTATGAATTGG+TGG | - | chr1_4:57341367-57341386 | None:intergenic | 35.0% | |
| ! | AGTGATGATGAAGAAGTTCT+TGG | - | chr1_4:57341383-57341402 | None:intergenic | 35.0% |
| !! | GTATTGTTTGGTGTTGAAAG+AGG | - | chr1_4:57341425-57341444 | None:intergenic | 35.0% |
| !! | AAAGGAGGGAAAGTATTGTT+TGG | - | chr1_4:57341437-57341456 | None:intergenic | 35.0% |
| !!! | GGGTGGTTTTGTTGATTATA+AGG | - | chr1_4:57341464-57341483 | None:intergenic | 35.0% |
| !! | GTAATTGGTGATGTTGAGAA+GGG | - | chr1_4:57341484-57341503 | None:intergenic | 35.0% |
| TATCTTCATCATCTTTGTGG+GGG | - | chr1_4:57341544-57341563 | None:intergenic | 35.0% | |
| CCTTATCTTCATCATCTTTG+TGG | - | chr1_4:57341547-57341566 | None:intergenic | 35.0% | |
| CCACAAAGATGATGAAGATA+AGG | + | chr1_4:57341544-57341563 | Msa0172330:CDS | 35.0% | |
| AGAACTTCATCATTAGTCCA+AGG | - | chr1_4:57341650-57341669 | None:intergenic | 35.0% | |
| TAAATATTTACGGTGTGCAC+AGG | + | chr1_4:57342137-57342156 | Msa0172330:intron | 35.0% | |
| !!! | TTTTAGGTTTGTTACTGAGC+TGG | + | chr1_4:57342279-57342298 | Msa0172330:CDS | 35.0% |
| AAATCTAGTTGAGGCTGAAA+AGG | + | chr1_4:57342339-57342358 | Msa0172330:CDS | 35.0% | |
| GTCAAAGAAAAGTGAAGAAG+AGG | + | chr1_4:57342429-57342448 | Msa0172330:CDS | 35.0% | |
| CTACAAATGATGAGAAGAAG+AGG | + | chr1_4:57342467-57342486 | Msa0172330:CDS | 35.0% | |
| AGTTTAGTAGAGAAGAAGCT+TGG | + | chr1_4:57342620-57342639 | Msa0172330:CDS | 35.0% | |
| TGAAGATGACATTGAAGCTA+AGG | - | chr1_4:57342776-57342795 | None:intergenic | 35.0% | |
| TTTCAAGAGTTTCCGGATTA+GGG | - | chr1_4:57342858-57342877 | None:intergenic | 35.0% | |
| !! | TTTTCAAGAGTTTCCGGATT+AGG | - | chr1_4:57342859-57342878 | None:intergenic | 35.0% |
| AGTAGTAGAAGAAGAAGGAA+GGG | - | chr1_4:57342917-57342936 | None:intergenic | 35.0% | |
| AAGTAGTAGAAGAAGAAGGA+AGG | - | chr1_4:57342918-57342937 | None:intergenic | 35.0% | |
| TCCTTCTTCTTCTACTACTT+TGG | + | chr1_4:57342918-57342937 | Msa0172330:CDS | 35.0% | |
| ACCAAAGTAGTAGAAGAAGA+AGG | - | chr1_4:57342922-57342941 | None:intergenic | 35.0% | |
| TTCTTCTTCTACTACTTTGG+TGG | + | chr1_4:57342921-57342940 | Msa0172330:CDS | 35.0% | |
| ! | AATGCCAACACTTCATCTTT+TGG | - | chr1_4:57343027-57343046 | None:intergenic | 35.0% |
| !! | TGTTGGCATTGATAAACTTG+AGG | + | chr1_4:57343037-57343056 | Msa0172330:CDS | 35.0% |
| GAGAATTTCACAAGGAATGT+TGG | + | chr1_4:57343119-57343138 | Msa0172330:CDS | 35.0% | |
| CAAAGGATGCTAATAGGAAA+AGG | + | chr1_4:57343214-57343233 | Msa0172330:CDS | 35.0% | |
| AGAAAGCAATAACGTGAATG+TGG | + | chr1_4:57343326-57343345 | Msa0172330:CDS | 35.0% | |
| ACACAAGATGAAAACCAAGA+TGG | + | chr1_4:57343378-57343397 | Msa0172330:CDS | 35.0% | |
| GTAATTTCACTATATGCAGC+AGG | + | chr1_4:57343443-57343462 | Msa0172330:exon | 35.0% | |
| TATATGCAGCAGGTTCATTA+TGG | + | chr1_4:57343453-57343472 | Msa0172330:three_prime_UTR | 35.0% | |
| ATAGATAGAGAGAAGGGTAG+AGG | + | chr1_4:57341176-57341195 | Msa0172330:five_prime_UTR | 40.0% | |
| TAGATAGAGAGAAGGGTAGA+GGG | + | chr1_4:57341177-57341196 | Msa0172330:five_prime_UTR | 40.0% | |
| TGAATTGGTGGAATTGGTCA+GGG | - | chr1_4:57341355-57341374 | None:intergenic | 40.0% | |
| ATGAATTGGTGGAATTGGTC+AGG | - | chr1_4:57341356-57341375 | None:intergenic | 40.0% | |
| !! | TTTGGTGTTGAAAGAGGGAA+AGG | - | chr1_4:57341419-57341438 | None:intergenic | 40.0% |
| !! | GGTAATTGGTGATGTTGAGA+AGG | - | chr1_4:57341485-57341504 | None:intergenic | 40.0% |
| GTTGAACTTGGAGAGGTAAT+TGG | - | chr1_4:57341499-57341518 | None:intergenic | 40.0% | |
| !! | AGATTAGGTTGAACTTGGAG+AGG | - | chr1_4:57341506-57341525 | None:intergenic | 40.0% |
| !! | GCAAGAGATTAGGTTGAACT+TGG | - | chr1_4:57341511-57341530 | None:intergenic | 40.0% |
| ! | TGTAAAGGGTGCAAGAGATT+AGG | - | chr1_4:57341521-57341540 | None:intergenic | 40.0% |
| TTCCTCAACTCATTGATCCT+TGG | + | chr1_4:57341630-57341649 | Msa0172330:CDS | 40.0% | |
| TTTGAAGATCAGATCCAGCA+TGG | + | chr1_4:57341676-57341695 | Msa0172330:CDS | 40.0% | |
| TTGGTTCCCAGATTTCACTT+GGG | + | chr1_4:57341703-57341722 | Msa0172330:CDS | 40.0% | |
| CATGTTCCCAAGTGAAATCT+GGG | - | chr1_4:57341712-57341731 | None:intergenic | 40.0% | |
| ACATGTTCCCAAGTGAAATC+TGG | - | chr1_4:57341713-57341732 | None:intergenic | 40.0% | |
| GTGTTTGTGAGCTGAATTGA+AGG | - | chr1_4:57341971-57341990 | None:intergenic | 40.0% | |
| !! | TTTTGGTCCTATTTCTCTCG+AGG | - | chr1_4:57342013-57342032 | None:intergenic | 40.0% |
| ! | ACGTAGTGCTGAAAAATGCA+AGG | + | chr1_4:57342183-57342202 | Msa0172330:CDS | 40.0% |
| AAGAGGTTTATCAAGGTGGT+GGG | + | chr1_4:57342302-57342321 | Msa0172330:CDS | 40.0% | |
| TTGAATCCTCCTCTACATGA+GGG | - | chr1_4:57342390-57342409 | None:intergenic | 40.0% | |
| TGTAGAGGAGGATTCAAGAA+TGG | + | chr1_4:57342393-57342412 | Msa0172330:CDS | 40.0% | |
| GAAGAAGAGGTAGTTGAGAA+AGG | + | chr1_4:57342442-57342461 | Msa0172330:CDS | 40.0% | |
| GAGAAGAAGAGGAAAAGATC+AGG | + | chr1_4:57342478-57342497 | Msa0172330:CDS | 40.0% | |
| ! | TAAGGGTTTTTGTGAGAGTG+TGG | + | chr1_4:57342522-57342541 | Msa0172330:CDS | 40.0% |
| GAGTGTGGTGAAGAAAATGA+TGG | + | chr1_4:57342537-57342556 | Msa0172330:CDS | 40.0% | |
| AGCTTGGAAGAAACAAGAGA+TGG | + | chr1_4:57342636-57342655 | Msa0172330:CDS | 40.0% | |
| !! | GAACAAAGAGCTTGAGTTGA+TGG | + | chr1_4:57342666-57342685 | Msa0172330:CDS | 40.0% |
| GAGACGATATTGGTAGAAGA+TGG | + | chr1_4:57343001-57343020 | Msa0172330:CDS | 40.0% | |
| ATGGCCAAAAGATGAAGTGT+TGG | + | chr1_4:57343020-57343039 | Msa0172330:CDS | 40.0% | |
| GGAAGGAAATAGCAACAACA+AGG | + | chr1_4:57343083-57343102 | Msa0172330:CDS | 40.0% | |
| TGTGAAATTCTCTCCCAAAG+TGG | - | chr1_4:57343111-57343130 | None:intergenic | 40.0% | |
| ! | CTTTGGGAGAGAATTTCACA+AGG | + | chr1_4:57343111-57343130 | Msa0172330:CDS | 40.0% |
| TCACAAGGAATGTTGGAGTT+AGG | + | chr1_4:57343126-57343145 | Msa0172330:CDS | 40.0% | |
| ! | GATACAAGAGAAGTGCAAAG+AGG | + | chr1_4:57343148-57343167 | Msa0172330:CDS | 40.0% |
| ! | AAAGAGGTGCAAAGAGAAGT+GGG | + | chr1_4:57343164-57343183 | Msa0172330:CDS | 40.0% |
| GAATGTGGCTGAAGAAAATG+TGG | + | chr1_4:57343341-57343360 | Msa0172330:CDS | 40.0% | |
| TAGTGAAATTACCAGCTTGG+AGG | - | chr1_4:57343435-57343454 | None:intergenic | 40.0% | |
| AGAGGGAAAGGTAAGTGAAG+AGG | - | chr1_4:57341407-57341426 | None:intergenic | 45.0% | |
| !! | ATTGGTGATGTTGAGAAGGG+TGG | - | chr1_4:57341481-57341500 | None:intergenic | 45.0% |
| ! | CATCTTTGTGGGGGTGTAAA+GGG | - | chr1_4:57341535-57341554 | None:intergenic | 45.0% |
| ! | TCATCTTTGTGGGGGTGTAA+AGG | - | chr1_4:57341536-57341555 | None:intergenic | 45.0% |
| GTCCAAGGATCAATGAGTTG+AGG | - | chr1_4:57341635-57341654 | None:intergenic | 45.0% | |
| ! | GTTGGTTCCCAGATTTCACT+TGG | + | chr1_4:57341702-57341721 | Msa0172330:CDS | 45.0% |
| TCACTTGGGAACATGTCTCA+AGG | + | chr1_4:57341717-57341736 | Msa0172330:CDS | 45.0% | |
| GTGTGTCTTTGTCTACCACA+TGG | - | chr1_4:57341943-57341962 | None:intergenic | 45.0% | |
| ACACACACCTCGAGAGAAAT+AGG | + | chr1_4:57342003-57342022 | Msa0172330:intron | 45.0% | |
| ! | GTTTGTTACTGAGCTGGAAG+AGG | + | chr1_4:57342285-57342304 | Msa0172330:CDS | 45.0% |
| GAGCTGGAAGAGGTTTATCA+AGG | + | chr1_4:57342295-57342314 | Msa0172330:CDS | 45.0% | |
| CTGGAAGAGGTTTATCAAGG+TGG | + | chr1_4:57342298-57342317 | Msa0172330:CDS | 45.0% | |
| GAAGAGGTTTATCAAGGTGG+TGG | + | chr1_4:57342301-57342320 | Msa0172330:CDS | 45.0% | |
| AGAGGTTTATCAAGGTGGTG+GGG | + | chr1_4:57342303-57342322 | Msa0172330:CDS | 45.0% | |
| GAACGAGGTGCAAGACAAAA+TGG | + | chr1_4:57342363-57342382 | Msa0172330:CDS | 45.0% | |
| CAAAATGGACCCTCATGTAG+AGG | + | chr1_4:57342378-57342397 | Msa0172330:CDS | 45.0% | |
| CTTGAATCCTCCTCTACATG+AGG | - | chr1_4:57342391-57342410 | None:intergenic | 45.0% | |
| GCACATGAACAAGCTATTGC+TGG | + | chr1_4:57342688-57342707 | Msa0172330:CDS | 45.0% | |
| GCACTCACAAAACCCTAATC+CGG | + | chr1_4:57342843-57342862 | Msa0172330:CDS | 45.0% | |
| GAGCTAGGGTTTACAGGTAT+TGG | - | chr1_4:57342892-57342911 | None:intergenic | 45.0% | |
| AAGAAGGAAGGGTTGAGCTA+GGG | - | chr1_4:57342906-57342925 | None:intergenic | 45.0% | |
| GAAATAGGGTTGTTCTTGCG+AGG | - | chr1_4:57342952-57342971 | None:intergenic | 45.0% | |
| ! | CAACAACAAGGCACCACTTT+GGG | + | chr1_4:57343095-57343114 | Msa0172330:CDS | 45.0% |
| ! | CAAAGAGGTGCAAAGAGAAG+TGG | + | chr1_4:57343163-57343182 | Msa0172330:CDS | 45.0% |
| GATGAAAACCAAGATGGTGC+TGG | + | chr1_4:57343384-57343403 | Msa0172330:CDS | 45.0% | |
| ATGCAGCAGGTTCATTATGG+AGG | + | chr1_4:57343456-57343475 | Msa0172330:three_prime_UTR | 45.0% | |
| TCAGATCCAGCATGGAGAGT+TGG | + | chr1_4:57341684-57341703 | Msa0172330:CDS | 50.0% | |
| ! | GAGGTTTATCAAGGTGGTGG+GGG | + | chr1_4:57342304-57342323 | Msa0172330:CDS | 50.0% |
| AATGGACCCTCATGTAGAGG+AGG | + | chr1_4:57342381-57342400 | Msa0172330:CDS | 50.0% | |
| AGGGTTGAGCTAGGGTTTAC+AGG | - | chr1_4:57342898-57342917 | None:intergenic | 50.0% | |
| GAAGAAGGAAGGGTTGAGCT+AGG | - | chr1_4:57342907-57342926 | None:intergenic | 50.0% | |
| CTCTCTCGCTGCTCGATATA+AGG | - | chr1_4:57342984-57343003 | None:intergenic | 50.0% | |
| AGCAGCGAGAGAGACGATAT+TGG | + | chr1_4:57342991-57343010 | Msa0172330:CDS | 50.0% | |
| ! | GCAACAACAAGGCACCACTT+TGG | + | chr1_4:57343094-57343113 | Msa0172330:CDS | 50.0% |
| TGCAGGTGAGTCTTCTCAAG+TGG | + | chr1_4:57343407-57343426 | Msa0172330:CDS | 50.0% | |
| GCAGGTGAGTCTTCTCAAGT+GGG | + | chr1_4:57343408-57343427 | Msa0172330:CDS | 50.0% | |
| CAGGTGAGTCTTCTCAAGTG+GGG | + | chr1_4:57343409-57343428 | Msa0172330:CDS | 50.0% | |
| TGGGAACCAACTCTCCATGC+TGG | - | chr1_4:57341693-57341712 | None:intergenic | 55.0% | |
| CACAGGAAGCTAGCTGACGT+TGG | + | chr1_4:57342154-57342173 | Msa0172330:intron | 55.0% | |
| TGAGGCTGAAAAGGCGAACG+AGG | + | chr1_4:57342348-57342367 | Msa0172330:CDS | 55.0% | |
| !! | AACCAAGATGGTGCTGGTGC+AGG | + | chr1_4:57343390-57343409 | Msa0172330:CDS | 55.0% |
| CTCTCGAGGTGTGTGTCTCG+TGG | - | chr1_4:57341999-57342018 | None:intergenic | 60.0% | |
| CACCTGCACCAGCACCATCT+TGG | - | chr1_4:57343395-57343414 | None:intergenic | 60.0% | |
| CTCAAGTGGGGCCTCCAAGC+TGG | + | chr1_4:57343421-57343440 | Msa0172330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 57341164 | 57343823 | 57341164 | ID=Msa0172330;Name=Msa0172330 |
| chr1_4 | mRNA | 57341164 | 57343823 | 57341164 | ID=Msa0172330-mRNA-1;Parent=Msa0172330;Name=Msa0172330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=174|1|1|1|1|1|2|377|562 |
| chr1_4 | exon | 57341164 | 57341738 | 57341164 | ID=Msa0172330-mRNA-1:exon:17506;Parent=Msa0172330-mRNA-1 |
| chr1_4 | exon | 57342159 | 57343823 | 57342159 | ID=Msa0172330-mRNA-1:exon:17507;Parent=Msa0172330-mRNA-1 |
| chr1_4 | five_prime_UTR | 57341164 | 57341337 | 57341164 | ID=Msa0172330-mRNA-1:five_prime_utr;Parent=Msa0172330-mRNA-1 |
| chr1_4 | CDS | 57341338 | 57341738 | 57341338 | ID=Msa0172330-mRNA-1:cds;Parent=Msa0172330-mRNA-1 |
| chr1_4 | CDS | 57342159 | 57343446 | 57342159 | ID=Msa0172330-mRNA-1:cds;Parent=Msa0172330-mRNA-1 |
| chr1_4 | three_prime_UTR | 57343447 | 57343823 | 57343447 | ID=Msa0172330-mRNA-1:three_prime_utr;Parent=Msa0172330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
