Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390270 | XP_003591003.1 | 96.092 | 563 | 15 | 5 | 1 | 562 | 1 | 557 | 0.0 | 1104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390270 | sp|Q8H181|GTL2_ARATH | 40.917 | 589 | 240 | 19 | 1 | 512 | 1 | 558 | 4.09e-102 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390270 | G7I6V9 | 96.092 | 563 | 15 | 5 | 1 | 562 | 1 | 557 | 0.0 | 1104 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1390270 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101690 | Msa1390270 | 0.803950 | 2.728793e-49 | -8.615850e-47 |
| Msa1365150 | Msa1390270 | 0.805500 | 1.295645e-49 | -8.615850e-47 |
| Msa1367880 | Msa1390270 | 0.816260 | 6.060926e-52 | -8.615850e-47 |
| Msa1390270 | Msa1414930 | 0.805736 | 1.155603e-49 | -8.615850e-47 |
| Msa1390270 | Msa1420060 | 0.845320 | 4.372422e-59 | -8.615850e-47 |
| Msa0650090 | Msa1390270 | 0.822190 | 2.704503e-53 | -8.615850e-47 |
| Msa0777050 | Msa1390270 | 0.809883 | 1.518551e-50 | -8.615850e-47 |
| Msa0787750 | Msa1390270 | 0.816639 | 4.984190e-52 | -8.615850e-47 |
| Msa0810020 | Msa1390270 | 0.806735 | 7.120818e-50 | -8.615850e-47 |
| Msa0833040 | Msa1390270 | 0.801374 | 9.279317e-49 | -8.615850e-47 |
| Msa0134130 | Msa1390270 | 0.810609 | 1.058739e-50 | -8.615850e-47 |
| Msa0172330 | Msa1390270 | 0.978048 | 5.117226e-145 | -8.615850e-47 |
| Msa0203160 | Msa1390270 | 0.843607 | 1.262636e-58 | -8.615850e-47 |
| Msa0219190 | Msa1390270 | 0.808677 | 2.753447e-50 | -8.615850e-47 |
| Msa1228610 | Msa1390270 | 0.805673 | 1.191666e-49 | -8.615850e-47 |
| Msa1249870 | Msa1390270 | 0.815986 | 6.977121e-52 | -8.615850e-47 |
| Msa0436500 | Msa1390270 | 0.800754 | 1.242785e-48 | -8.615850e-47 |
| Msa1018790 | Msa1390270 | 0.813830 | 2.098320e-51 | -8.615850e-47 |
| Msa1041530 | Msa1390270 | 0.829755 | 4.309686e-55 | -8.615850e-47 |
| Msa1061500 | Msa1390270 | 0.821719 | 3.476950e-53 | -8.615850e-47 |
| Msa1081570 | Msa1390270 | 0.825710 | 4.040816e-54 | -8.615850e-47 |
| Msa1123880 | Msa1390270 | 0.811406 | 7.113517e-51 | -8.615850e-47 |
| Msa1126510 | Msa1390270 | 0.806282 | 8.871279e-50 | -8.615850e-47 |
| Msa1127140 | Msa1390270 | 0.821660 | 3.588025e-53 | -8.615850e-47 |
| Msa1129980 | Msa1390270 | 0.800329 | 1.516670e-48 | -8.615850e-47 |
| Msa1134110 | Msa1390270 | 0.800911 | 1.153903e-48 | -8.615850e-47 |
| Msa1150230 | Msa1390270 | 0.803222 | 3.865035e-49 | -8.615850e-47 |
| Msa1150970 | Msa1390270 | 0.807410 | 5.124969e-50 | -8.615850e-47 |
| Msa1166400 | Msa1390270 | 0.807311 | 5.377737e-50 | -8.615850e-47 |
| Msa1171690 | Msa1390270 | 0.805644 | 1.208735e-49 | -8.615850e-47 |
| Msa0526660 | Msa1390270 | 0.976250 | 1.815555e-141 | -8.615850e-47 |
| Msa0526750 | Msa1390270 | 0.951776 | 9.989619e-110 | -8.615850e-47 |
| Msa0854830 | Msa1390270 | 0.851753 | 7.225182e-61 | -8.615850e-47 |
| Msa0862100 | Msa1390270 | 0.806770 | 6.999700e-50 | -8.615850e-47 |
| Msa0872310 | Msa1390270 | 0.808045 | 3.756331e-50 | -8.615850e-47 |
| Msa0873190 | Msa1390270 | 0.800384 | 1.478198e-48 | -8.615850e-47 |
| Msa0885060 | Msa1390270 | 0.806973 | 6.339958e-50 | -8.615850e-47 |
| Msa0905550 | Msa1390270 | 0.827772 | 1.300723e-54 | -8.615850e-47 |
| Msa0937550 | Msa1390270 | 0.838221 | 3.270239e-57 | -8.615850e-47 |
| Msa0974750 | Msa1390270 | 0.816171 | 6.344605e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390270 | MtrunA17_Chr1g0190851 | 96.092 | 563 | 15 | 5 | 1 | 562 | 1 | 557 | 0.0 | 1104 |
| Msa1390270 | MtrunA17_Chr7g0273941 | 45.070 | 497 | 187 | 18 | 34 | 512 | 51 | 479 | 3.42e-110 | 337 |
| Msa1390270 | MtrunA17_Chr1g0201941 | 35.135 | 296 | 161 | 7 | 230 | 512 | 266 | 543 | 7.90e-48 | 176 |
| Msa1390270 | MtrunA17_Chr1g0201941 | 40.000 | 100 | 57 | 2 | 410 | 509 | 46 | 142 | 2.42e-16 | 82.4 |
| Msa1390270 | MtrunA17_Chr1g0201941 | 43.529 | 85 | 43 | 1 | 105 | 184 | 58 | 142 | 2.19e-14 | 76.3 |
| Msa1390270 | MtrunA17_Chr2g0290511 | 34.043 | 282 | 154 | 6 | 258 | 533 | 117 | 372 | 2.72e-37 | 142 |
| Msa1390270 | MtrunA17_Chr1g0201911 | 34.363 | 259 | 136 | 5 | 255 | 512 | 236 | 461 | 1.33e-34 | 137 |
| Msa1390270 | MtrunA17_Chr1g0201911 | 45.882 | 85 | 41 | 1 | 105 | 184 | 56 | 140 | 8.17e-15 | 77.4 |
| Msa1390270 | MtrunA17_Chr1g0201911 | 40.217 | 92 | 52 | 2 | 421 | 512 | 55 | 143 | 3.44e-14 | 75.5 |
| Msa1390270 | MtrunA17_Chr6g0463941 | 59.783 | 92 | 35 | 1 | 421 | 512 | 464 | 553 | 2.26e-27 | 116 |
| Msa1390270 | MtrunA17_Chr6g0463941 | 40.860 | 93 | 52 | 2 | 419 | 511 | 53 | 142 | 1.07e-15 | 80.5 |
| Msa1390270 | MtrunA17_Chr6g0463941 | 42.353 | 85 | 44 | 1 | 105 | 184 | 56 | 140 | 2.64e-14 | 75.9 |
| Msa1390270 | MtrunA17_Chr7g0265831 | 27.985 | 268 | 162 | 7 | 105 | 346 | 116 | 378 | 4.41e-20 | 93.6 |
| Msa1390270 | MtrunA17_Chr7g0265831 | 39.785 | 93 | 52 | 3 | 421 | 512 | 115 | 204 | 1.49e-12 | 70.1 |
| Msa1390270 | MtrunA17_Chr1g0179191 | 29.707 | 239 | 149 | 7 | 105 | 328 | 132 | 366 | 1.78e-18 | 88.6 |
| Msa1390270 | MtrunA17_Chr1g0179191 | 39.785 | 93 | 52 | 3 | 421 | 512 | 131 | 220 | 1.69e-12 | 70.1 |
| Msa1390270 | MtrunA17_Chr1g0198171 | 35.294 | 136 | 75 | 4 | 384 | 509 | 68 | 200 | 1.99e-15 | 79.0 |
| Msa1390270 | MtrunA17_Chr1g0198171 | 23.907 | 389 | 219 | 14 | 4 | 330 | 6 | 379 | 2.33e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390270 | AT5G28300.1 | 40.917 | 589 | 240 | 19 | 1 | 512 | 1 | 558 | 4.16e-103 | 324 |
| Msa1390270 | AT1G76890.2 | 38.806 | 268 | 130 | 4 | 246 | 512 | 252 | 486 | 4.52e-47 | 174 |
| Msa1390270 | AT1G76890.2 | 46.591 | 88 | 44 | 2 | 419 | 506 | 39 | 123 | 1.80e-16 | 83.2 |
| Msa1390270 | AT1G76890.2 | 45.783 | 83 | 40 | 1 | 105 | 182 | 42 | 124 | 3.66e-14 | 75.9 |
| Msa1390270 | AT1G76880.1 | 34.082 | 267 | 138 | 4 | 258 | 512 | 257 | 497 | 2.76e-37 | 146 |
| Msa1390270 | AT1G76880.1 | 39.048 | 105 | 61 | 2 | 419 | 523 | 59 | 160 | 4.30e-15 | 79.0 |
| Msa1390270 | AT1G76880.1 | 44.706 | 85 | 42 | 1 | 105 | 184 | 62 | 146 | 8.51e-13 | 71.6 |
| Msa1390270 | AT1G33240.3 | 57.778 | 90 | 36 | 1 | 421 | 510 | 435 | 522 | 3.20e-26 | 113 |
| Msa1390270 | AT1G33240.3 | 43.820 | 89 | 47 | 2 | 421 | 509 | 62 | 147 | 4.68e-17 | 85.1 |
| Msa1390270 | AT1G33240.3 | 45.882 | 85 | 41 | 1 | 105 | 184 | 63 | 147 | 1.93e-16 | 83.2 |
| Msa1390270 | AT1G33240.2 | 57.778 | 90 | 36 | 1 | 421 | 510 | 396 | 483 | 3.38e-26 | 113 |
| Msa1390270 | AT1G33240.1 | 57.778 | 90 | 36 | 1 | 421 | 510 | 435 | 522 | 4.27e-26 | 113 |
| Msa1390270 | AT1G33240.1 | 43.820 | 89 | 47 | 2 | 421 | 509 | 62 | 147 | 4.92e-17 | 85.1 |
| Msa1390270 | AT1G33240.1 | 45.882 | 85 | 41 | 1 | 105 | 184 | 63 | 147 | 2.65e-16 | 82.8 |
| Msa1390270 | AT5G47660.1 | 33.209 | 268 | 131 | 12 | 243 | 510 | 169 | 388 | 2.38e-19 | 90.9 |
| Msa1390270 | AT3G10000.1 | 40.000 | 95 | 54 | 2 | 421 | 514 | 88 | 180 | 1.39e-14 | 76.6 |
| Msa1390270 | AT5G03680.1 | 42.857 | 91 | 48 | 3 | 421 | 510 | 119 | 206 | 1.48e-13 | 73.9 |
| Msa1390270 | AT3G10000.2 | 36.170 | 94 | 49 | 2 | 421 | 514 | 88 | 170 | 9.42e-12 | 67.8 |
Find 126 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGATTTGAAGTGTTTA+AGG | 0.195477 | tig0021333:+18816 | Msa1390270:CDS |
| GTCTTTGATCTCTTTCAATT+TGG | 0.216907 | tig0021333:-17913 | None:intergenic |
| ATAAGGCTATATGAAGAAAT+AGG | 0.236435 | tig0021333:-19276 | None:intergenic |
| CTCTCTCGCTGCTCGATATA+AGG | 0.299308 | tig0021333:-19293 | None:intergenic |
| TCCTTCTTCTTCTACTACTT+TGG | 0.306363 | tig0021333:+19230 | Msa1390270:CDS |
| CCTTATCTTCATCATCTTTG+TGG | 0.317408 | tig0021333:-17856 | None:intergenic |
| AATGCCAACACTTCATCTTT+TGG | 0.317647 | tig0021333:-19336 | None:intergenic |
| AATCATAATCAAAATAGTTT+TGG | 0.326250 | tig0021333:+18562 | Msa1390270:CDS |
| CTTATCTTCATCATCTTTGT+GGG | 0.336037 | tig0021333:-17855 | None:intergenic |
| AGGGTTGAGCTAGGGTTTAC+AGG | 0.337022 | tig0021333:-19207 | None:intergenic |
| TTTCAAGAGTTTCCGGATTA+GGG | 0.337138 | tig0021333:-19167 | None:intergenic |
| TCACAAGGAATGTTGGAGTT+AGG | 0.345818 | tig0021333:+19438 | Msa1390270:CDS |
| ACATGTTCCCAAGTGAAATC+TGG | 0.352061 | tig0021333:-18022 | None:intergenic |
| GAACGAGGTGCAAGACAAAA+TGG | 0.355649 | tig0021333:+18675 | Msa1390270:CDS |
| TATATGCAGCAGGTTCATTA+TGG | 0.361159 | tig0021333:+19765 | Msa1390270:three_prime_UTR |
| GAACAAAGAGCTTGAGTTGA+TGG | 0.361917 | tig0021333:+18978 | Msa1390270:CDS |
| GAGCTAGGGTTTACAGGTAT+TGG | 0.369227 | tig0021333:-19201 | None:intergenic |
| GATAGATTTGAAGTGTTTAA+GGG | 0.370463 | tig0021333:+18817 | Msa1390270:CDS |
| AGCAGCGAGAGAGACGATAT+TGG | 0.377007 | tig0021333:+19303 | Msa1390270:CDS |
| AGTGATGATGAAGAAGTTCT+TGG | 0.378048 | tig0021333:-17692 | None:intergenic |
| GAAGAAGGAAGGGTTGAGCT+AGG | 0.386310 | tig0021333:-19216 | None:intergenic |
| CAACAACAAGGCACCACTTT+GGG | 0.393210 | tig0021333:+19407 | Msa1390270:CDS |
| ATGAATTGGTGGAATTGGTC+AGG | 0.408406 | tig0021333:-17665 | None:intergenic |
| TTCTTCTTCTACTACTTTGG+TGG | 0.410965 | tig0021333:+19233 | Msa1390270:CDS |
| AGTTTAGTAGAGAAGAAGCT+TGG | 0.425700 | tig0021333:+18932 | Msa1390270:CDS |
| TTGAGCAATCTTTATAATCA+AGG | 0.426028 | tig0021333:+19585 | Msa1390270:CDS |
| GAGTTATGAATTGGTGGAAT+TGG | 0.428139 | tig0021333:-17670 | None:intergenic |
| GAGAAGAAGAGGAAAAGATC+AGG | 0.430204 | tig0021333:+18790 | Msa1390270:CDS |
| ATAGATAGAGAGAAGGGTAG+AGG | 0.436646 | tig0021333:+17490 | Msa1390270:five_prime_UTR |
| TAAGGCTATATGAAGAAATA+GGG | 0.437015 | tig0021333:-19275 | None:intergenic |
| GAGAATTTCACAAGGAATGT+TGG | 0.441400 | tig0021333:+19431 | Msa1390270:CDS |
| AAGTTCTTGGAGTTATGAAT+TGG | 0.444089 | tig0021333:-17679 | None:intergenic |
| ATTTGGAAGTTGTTCATTGA+AGG | 0.451783 | tig0021333:-17896 | None:intergenic |
| TTCCTCAACTCATTGATCCT+TGG | 0.453786 | tig0021333:+17942 | Msa1390270:CDS |
| CAACAACAACAATGAAGAAA+AGG | 0.456418 | tig0021333:+19374 | Msa1390270:CDS |
| TGTTGATTATAAGGATCAAA+AGG | 0.457871 | tig0021333:-17764 | None:intergenic |
| CACCTGCACCAGCACCATCT+TGG | 0.460031 | tig0021333:-19704 | None:intergenic |
| AAATCTAGTTGAGGCTGAAA+AGG | 0.460400 | tig0021333:+18651 | Msa1390270:CDS |
| AAGAAGGAAGGGTTGAGCTA+GGG | 0.460441 | tig0021333:-19215 | None:intergenic |
| AAAGGAGGGAAAGTATTGTT+TGG | 0.461893 | tig0021333:-17746 | None:intergenic |
| TTGCTCAATAGATGAAAGTA+AGG | 0.463276 | tig0021333:-19570 | None:intergenic |
| CAGAGAAATAGATAGAGAGA+AGG | 0.470696 | tig0021333:+17483 | Msa1390270:five_prime_UTR |
| TAGATAGAGAGAAGGGTAGA+GGG | 0.472756 | tig0021333:+17491 | Msa1390270:five_prime_UTR |
| TGTAAAGGGTGCAAGAGATT+AGG | 0.478381 | tig0021333:-17830 | None:intergenic |
| GCAAGAGATTAGGTTGAACT+TGG | 0.478602 | tig0021333:-17820 | None:intergenic |
| TTCTTGGAGTTATGAATTGG+TGG | 0.479434 | tig0021333:-17676 | None:intergenic |
| GAGGTTTATCAAGGTGGTGG+GGG | 0.479843 | tig0021333:+18616 | Msa1390270:CDS |
| AGAGAAATAGATAGAGAGAA+GGG | 0.480380 | tig0021333:+17484 | Msa1390270:five_prime_UTR |
| CCACAAAGATGATGAAGATA+AGG | 0.480738 | tig0021333:+17856 | Msa1390270:CDS |
| CTCAAGTGGGGCCTCCAAGC+TGG | 0.484767 | tig0021333:+19733 | Msa1390270:CDS |
| TTCAAGAATGGATGATGTAT+TGG | 0.485834 | tig0021333:+18717 | Msa1390270:CDS |
| CAAAGGATGCTAATAGGAAA+AGG | 0.488346 | tig0021333:+19526 | Msa1390270:CDS |
| GCAACAACAAGGCACCACTT+TGG | 0.490808 | tig0021333:+19406 | Msa1390270:CDS |
| GTCAAAGAAAAGTGAAGAAG+AGG | 0.493141 | tig0021333:+18741 | Msa1390270:CDS |
| TATTGTTTGGTGTTGAAAGA+GGG | 0.496288 | tig0021333:-17733 | None:intergenic |
| TGAAGATGACATTGAAGCTA+AGG | 0.499602 | tig0021333:-19085 | None:intergenic |
| CAAAGGAATTGAATTGAAGA+AGG | 0.502558 | tig0021333:+17568 | Msa1390270:five_prime_UTR |
| GAAGAAGAGGTAGTTGAGAA+AGG | 0.502624 | tig0021333:+18754 | Msa1390270:CDS |
| GTAATTTCACTATATGCAGC+AGG | 0.504977 | tig0021333:+19755 | Msa1390270:exon |
| GCACATGAACAAGCTATTGC+TGG | 0.507249 | tig0021333:+19000 | Msa1390270:CDS |
| CAAAACACAAACATGTATGA+TGG | 0.510594 | tig0021333:+17638 | Msa1390270:exon |
| CATGTTCCCAAGTGAAATCT+GGG | 0.514235 | tig0021333:-18021 | None:intergenic |
| GCAGGTGAGTCTTCTCAAGT+GGG | 0.514949 | tig0021333:+19720 | Msa1390270:CDS |
| GTTGGTTCCCAGATTTCACT+TGG | 0.516402 | tig0021333:+18014 | Msa1390270:CDS |
| GCACTCACAAAACCCTAATC+CGG | 0.519084 | tig0021333:+19155 | Msa1390270:CDS |
| GAAGAGGTTTATCAAGGTGG+TGG | 0.520513 | tig0021333:+18613 | Msa1390270:CDS |
| TTATCTTCATCATCTTTGTG+GGG | 0.521990 | tig0021333:-17854 | None:intergenic |
| AGAGGGAAAGGTAAGTGAAG+AGG | 0.522502 | tig0021333:-17716 | None:intergenic |
| AACCAAGATGGTGCTGGTGC+AGG | 0.525566 | tig0021333:+19702 | Msa1390270:CDS |
| GTTTGTTACTGAGCTGGAAG+AGG | 0.529219 | tig0021333:+18597 | Msa1390270:CDS |
| TGCAGGTGAGTCTTCTCAAG+TGG | 0.532154 | tig0021333:+19719 | Msa1390270:CDS |
| AAGTAGTAGAAGAAGAAGGA+AGG | 0.534716 | tig0021333:-19227 | None:intergenic |
| TTTGGTGTTGAAAGAGGGAA+AGG | 0.535775 | tig0021333:-17728 | None:intergenic |
| GAGACGATATTGGTAGAAGA+TGG | 0.544390 | tig0021333:+19313 | Msa1390270:CDS |
| TGGGAACCAACTCTCCATGC+TGG | 0.546340 | tig0021333:-18002 | None:intergenic |
| GTATTGTTTGGTGTTGAAAG+AGG | 0.549012 | tig0021333:-17734 | None:intergenic |
| CAAAGAGGTGCAAAGAGAAG+TGG | 0.549838 | tig0021333:+19475 | Msa1390270:CDS |
| TATCTTCATCATCTTTGTGG+GGG | 0.551544 | tig0021333:-17853 | None:intergenic |
| TGTAGAGGAGGATTCAAGAA+TGG | 0.554166 | tig0021333:+18705 | Msa1390270:CDS |
| AGAGGTTTATCAAGGTGGTG+GGG | 0.556530 | tig0021333:+18615 | Msa1390270:CDS |
| TAGTGAAATTACCAGCTTGG+AGG | 0.560803 | tig0021333:-19744 | None:intergenic |
| TCAGATCCAGCATGGAGAGT+TGG | 0.563903 | tig0021333:+17996 | Msa1390270:CDS |
| CTACAAATGATGAGAAGAAG+AGG | 0.565637 | tig0021333:+18779 | Msa1390270:CDS |
| GGCAATTGATGATGTTGAGA+AGG | 0.566211 | tig0021333:-17794 | None:intergenic |
| ATTTAATTTACAGTGAGCAA+AGG | 0.569142 | tig0021333:+17551 | Msa1390270:five_prime_UTR |
| ACCAAAGTAGTAGAAGAAGA+AGG | 0.573800 | tig0021333:-19231 | None:intergenic |
| ATGGCCAAAAGATGAAGTGT+TGG | 0.578682 | tig0021333:+19332 | Msa1390270:CDS |
| ATATCATCAAAATCCAAAGA+AGG | 0.579812 | tig0021333:-19814 | None:intergenic |
| AAGAGGTTTATCAAGGTGGT+GGG | 0.581021 | tig0021333:+18614 | Msa1390270:CDS |
| TGATTATAAGGATCAAAAGG+AGG | 0.583124 | tig0021333:-17761 | None:intergenic |
| GATTATAAGGATCAAAAGGA+GGG | 0.583546 | tig0021333:-17760 | None:intergenic |
| CTTGAATCCTCCTCTACATG+AGG | 0.583768 | tig0021333:-18700 | None:intergenic |
| AAAGAGGTGCAAAGAGAAGT+GGG | 0.586402 | tig0021333:+19476 | Msa1390270:CDS |
| GAGCTGGAAGAGGTTTATCA+AGG | 0.586678 | tig0021333:+18607 | Msa1390270:CDS |
| ATATAGTGAAATTACCAGCT+TGG | 0.588322 | tig0021333:-19747 | None:intergenic |
| TGAATTGGTGGAATTGGTCA+GGG | 0.590311 | tig0021333:-17664 | None:intergenic |
| AGTAGTAGAAGAAGAAGGAA+GGG | 0.592188 | tig0021333:-19226 | None:intergenic |
| GAGTGTGGTGAAGAAAATGA+TGG | 0.595280 | tig0021333:+18849 | Msa1390270:CDS |
| ATTGATGATGTTGAGAAGGG+TGG | 0.595371 | tig0021333:-17790 | None:intergenic |
| GTCCAAGGATCAATGAGTTG+AGG | 0.597929 | tig0021333:-17944 | None:intergenic |
| AGATTAGGTTGAACTTGGAG+TGG | 0.598084 | tig0021333:-17815 | None:intergenic |
| GAAATAGGGTTGTTCTTGCG+AGG | 0.598239 | tig0021333:-19261 | None:intergenic |
| TGTGAAATTCTCTCCCAAAG+TGG | 0.599247 | tig0021333:-19420 | None:intergenic |
| AGCTTGGAAGAAACAAGAGA+TGG | 0.599559 | tig0021333:+18948 | Msa1390270:CDS |
| TTTGAAGATCAGATCCAGCA+TGG | 0.607084 | tig0021333:+17988 | Msa1390270:CDS |
| CTTTGGGAGAGAATTTCACA+AGG | 0.610777 | tig0021333:+19423 | Msa1390270:CDS |
| CAAAATGGACCCTCATGTAG+AGG | 0.618548 | tig0021333:+18690 | Msa1390270:CDS |
| GATGAAAACCAAGATGGTGC+TGG | 0.618902 | tig0021333:+19696 | Msa1390270:CDS |
| TCACTTGGGAACATGTCTCA+AGG | 0.620742 | tig0021333:+18029 | Msa1390270:CDS |
| AACAACAATGAAGAAAAGGA+AGG | 0.621045 | tig0021333:+19378 | Msa1390270:CDS |
| AGAACTTCATCATTAGTCCA+AGG | 0.625382 | tig0021333:-17959 | None:intergenic |
| AGAAAGCAATAACGTGAATG+TGG | 0.625602 | tig0021333:+19638 | Msa1390270:CDS |
| CAGGTGAGTCTTCTCAAGTG+GGG | 0.628435 | tig0021333:+19721 | Msa1390270:CDS |
| TTGAATCCTCCTCTACATGA+GGG | 0.632417 | tig0021333:-18699 | None:intergenic |
| GCAATTGATGATGTTGAGAA+GGG | 0.633005 | tig0021333:-17793 | None:intergenic |
| ATGCAGCAGGTTCATTATGG+AGG | 0.633386 | tig0021333:+19768 | Msa1390270:three_prime_UTR |
| TTGGTTCCCAGATTTCACTT+GGG | 0.635745 | tig0021333:+18015 | Msa1390270:CDS |
| CACAGGAAGCTAGCTGACGT+TGG | 0.645573 | tig0021333:+18466 | Msa1390270:intron |
| ACACAAGATGAAAACCAAGA+TGG | 0.647031 | tig0021333:+19690 | Msa1390270:CDS |
| AATGGACCCTCATGTAGAGG+AGG | 0.651973 | tig0021333:+18693 | Msa1390270:CDS |
| CTGGAAGAGGTTTATCAAGG+TGG | 0.657958 | tig0021333:+18610 | Msa1390270:CDS |
| TGAGGCTGAAAAGGCGAACG+AGG | 0.666720 | tig0021333:+18660 | Msa1390270:CDS |
| TGTTGGCATTGATAAACTTG+AGG | 0.669533 | tig0021333:+19349 | Msa1390270:CDS |
| GATACAAGAGAAGTGCAAAG+AGG | 0.678975 | tig0021333:+19460 | Msa1390270:CDS |
| GGAAGGAAATAGCAACAACA+AGG | 0.682423 | tig0021333:+19395 | Msa1390270:CDS |
| GAATGTGGCTGAAGAAAATG+TGG | 0.683811 | tig0021333:+19653 | Msa1390270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGGATTTAAATATTTA+CGG | + | tig0021333:18439-18458 | Msa1390270:intron | 10.0% |
| !! | TAGCTCATATTATTAATTAT+TGG | - | tig0021333:18127-18146 | None:intergenic | 15.0% |
| !!! | TCTATGATTAATTGTTTTTT+TGG | + | tig0021333:18423-18442 | Msa1390270:intron | 15.0% |
| !!! | AATCATAATCAAAATAGTTT+TGG | + | tig0021333:18562-18581 | Msa1390270:CDS | 15.0% |
| !!! | TGATATGTGTTTTTTTTTTT+TGG | + | tig0021333:20012-20031 | Msa1390270:three_prime_UTR | 15.0% |
| !! | TTGTTAATGACTTGATTAAA+TGG | - | tig0021333:18099-18118 | None:intergenic | 20.0% |
| !!! | TATTAAAAAAAGTATCCATG+TGG | + | tig0021333:18237-18256 | Msa1390270:intron | 20.0% |
| !!! | ATAGTTTTGGTAAGAATTTT+AGG | + | tig0021333:18575-18594 | Msa1390270:CDS | 20.0% |
| !! | ATTTAATTTACAGTGAGCAA+AGG | + | tig0021333:17551-17570 | Msa1390270:five_prime_UTR | 25.0% |
| !! | TGTTGATTATAAGGATCAAA+AGG | - | tig0021333:17767-17786 | None:intergenic | 25.0% |
| ! | TTAAGAAAAGAAGAAATTCG+TGG | - | tig0021333:18184-18203 | None:intergenic | 25.0% |
| !! | AATTCTGTTCCTTCAATTTT+TGG | - | tig0021333:18342-18361 | None:intergenic | 25.0% |
| ! | GAATAACAAAAATCTAGTTG+AGG | + | tig0021333:18642-18661 | Msa1390270:CDS | 25.0% |
| !! | TGATAGATTTGAAGTGTTTA+AGG | + | tig0021333:18816-18835 | Msa1390270:CDS | 25.0% |
| !! | GATAGATTTGAAGTGTTTAA+GGG | + | tig0021333:18817-18836 | Msa1390270:CDS | 25.0% |
| ! | TAAGGCTATATGAAGAAATA+GGG | - | tig0021333:19278-19297 | None:intergenic | 25.0% |
| ! | ATAAGGCTATATGAAGAAAT+AGG | - | tig0021333:19279-19298 | None:intergenic | 25.0% |
| ! | TTGAGCAATCTTTATAATCA+AGG | + | tig0021333:19585-19604 | Msa1390270:CDS | 25.0% |
| ! | ATATCATCAAAATCCAAAGA+AGG | - | tig0021333:19817-19836 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTTTTTTGGTCA+AGG | + | tig0021333:20018-20037 | Msa1390270:three_prime_UTR | 25.0% |
| AGAGAAATAGATAGAGAGAA+GGG | + | tig0021333:17484-17503 | Msa1390270:five_prime_UTR | 30.0% | |
| CAAAGGAATTGAATTGAAGA+AGG | + | tig0021333:17568-17587 | Msa1390270:five_prime_UTR | 30.0% | |
| CAAAACACAAACATGTATGA+TGG | + | tig0021333:17638-17657 | Msa1390270:exon | 30.0% | |
| AAGTTCTTGGAGTTATGAAT+TGG | - | tig0021333:17682-17701 | None:intergenic | 30.0% | |
| !! | TATTGTTTGGTGTTGAAAGA+GGG | - | tig0021333:17736-17755 | None:intergenic | 30.0% |
| GATTATAAGGATCAAAAGGA+GGG | - | tig0021333:17763-17782 | None:intergenic | 30.0% | |
| TGATTATAAGGATCAAAAGG+AGG | - | tig0021333:17764-17783 | None:intergenic | 30.0% | |
| TTATCTTCATCATCTTTGTG+GGG | - | tig0021333:17857-17876 | None:intergenic | 30.0% | |
| CTTATCTTCATCATCTTTGT+GGG | - | tig0021333:17858-17877 | None:intergenic | 30.0% | |
| ATTTGGAAGTTGTTCATTGA+AGG | - | tig0021333:17899-17918 | None:intergenic | 30.0% | |
| GTCTTTGATCTCTTTCAATT+TGG | - | tig0021333:17916-17935 | None:intergenic | 30.0% | |
| TGATTAAATGGATGAAGTGA+AGG | - | tig0021333:18087-18106 | None:intergenic | 30.0% | |
| GAAATAGGACCAAAAATTGA+AGG | + | tig0021333:18330-18349 | Msa1390270:intron | 30.0% | |
| TTCAAGAATGGATGATGTAT+TGG | + | tig0021333:18717-18736 | Msa1390270:CDS | 30.0% | |
| !!! | AGAGTTTTTTCAAGAGTTTC+CGG | - | tig0021333:19177-19196 | None:intergenic | 30.0% |
| CAACAACAACAATGAAGAAA+AGG | + | tig0021333:19374-19393 | Msa1390270:CDS | 30.0% | |
| AACAACAATGAAGAAAAGGA+AGG | + | tig0021333:19378-19397 | Msa1390270:CDS | 30.0% | |
| CAAGTACTTCAGAAAAACAA+AGG | + | tig0021333:19509-19528 | Msa1390270:CDS | 30.0% | |
| GAAAAACAAAGGATGCTAAT+AGG | + | tig0021333:19520-19539 | Msa1390270:CDS | 30.0% | |
| TTGCTCAATAGATGAAAGTA+AGG | - | tig0021333:19573-19592 | None:intergenic | 30.0% | |
| ATATAGTGAAATTACCAGCT+TGG | - | tig0021333:19750-19769 | None:intergenic | 30.0% | |
| ! | TTTTATGCATGTACCTTCTT+TGG | + | tig0021333:19801-19820 | Msa1390270:three_prime_UTR | 30.0% |
| CAGAGAAATAGATAGAGAGA+AGG | + | tig0021333:17483-17502 | Msa1390270:five_prime_UTR | 35.0% | |
| GAGTTATGAATTGGTGGAAT+TGG | - | tig0021333:17673-17692 | None:intergenic | 35.0% | |
| TTCTTGGAGTTATGAATTGG+TGG | - | tig0021333:17679-17698 | None:intergenic | 35.0% | |
| ! | AGTGATGATGAAGAAGTTCT+TGG | - | tig0021333:17695-17714 | None:intergenic | 35.0% |
| !! | GTATTGTTTGGTGTTGAAAG+AGG | - | tig0021333:17737-17756 | None:intergenic | 35.0% |
| !! | AAAGGAGGGAAAGTATTGTT+TGG | - | tig0021333:17749-17768 | None:intergenic | 35.0% |
| !!! | GGGTGGTTTTGTTGATTATA+AGG | - | tig0021333:17776-17795 | None:intergenic | 35.0% |
| !! | GCAATTGATGATGTTGAGAA+GGG | - | tig0021333:17796-17815 | None:intergenic | 35.0% |
| TATCTTCATCATCTTTGTGG+GGG | - | tig0021333:17856-17875 | None:intergenic | 35.0% | |
| CCTTATCTTCATCATCTTTG+TGG | - | tig0021333:17859-17878 | None:intergenic | 35.0% | |
| CCACAAAGATGATGAAGATA+AGG | + | tig0021333:17856-17875 | Msa1390270:CDS | 35.0% | |
| AGAACTTCATCATTAGTCCA+AGG | - | tig0021333:17962-17981 | None:intergenic | 35.0% | |
| TAAATATTTACGGTGTGCAC+AGG | + | tig0021333:18449-18468 | Msa1390270:intron | 35.0% | |
| !!! | TTTTAGGTTTGTTACTGAGC+TGG | + | tig0021333:18591-18610 | Msa1390270:CDS | 35.0% |
| AAATCTAGTTGAGGCTGAAA+AGG | + | tig0021333:18651-18670 | Msa1390270:CDS | 35.0% | |
| GTCAAAGAAAAGTGAAGAAG+AGG | + | tig0021333:18741-18760 | Msa1390270:CDS | 35.0% | |
| CTACAAATGATGAGAAGAAG+AGG | + | tig0021333:18779-18798 | Msa1390270:CDS | 35.0% | |
| AGTTTAGTAGAGAAGAAGCT+TGG | + | tig0021333:18932-18951 | Msa1390270:CDS | 35.0% | |
| TGAAGATGACATTGAAGCTA+AGG | - | tig0021333:19088-19107 | None:intergenic | 35.0% | |
| TTTCAAGAGTTTCCGGATTA+GGG | - | tig0021333:19170-19189 | None:intergenic | 35.0% | |
| !! | TTTTCAAGAGTTTCCGGATT+AGG | - | tig0021333:19171-19190 | None:intergenic | 35.0% |
| AGTAGTAGAAGAAGAAGGAA+GGG | - | tig0021333:19229-19248 | None:intergenic | 35.0% | |
| AAGTAGTAGAAGAAGAAGGA+AGG | - | tig0021333:19230-19249 | None:intergenic | 35.0% | |
| TCCTTCTTCTTCTACTACTT+TGG | + | tig0021333:19230-19249 | Msa1390270:CDS | 35.0% | |
| ACCAAAGTAGTAGAAGAAGA+AGG | - | tig0021333:19234-19253 | None:intergenic | 35.0% | |
| TTCTTCTTCTACTACTTTGG+TGG | + | tig0021333:19233-19252 | Msa1390270:CDS | 35.0% | |
| ! | AATGCCAACACTTCATCTTT+TGG | - | tig0021333:19339-19358 | None:intergenic | 35.0% |
| !! | TGTTGGCATTGATAAACTTG+AGG | + | tig0021333:19349-19368 | Msa1390270:CDS | 35.0% |
| GAGAATTTCACAAGGAATGT+TGG | + | tig0021333:19431-19450 | Msa1390270:CDS | 35.0% | |
| CAAAGGATGCTAATAGGAAA+AGG | + | tig0021333:19526-19545 | Msa1390270:CDS | 35.0% | |
| AGAAAGCAATAACGTGAATG+TGG | + | tig0021333:19638-19657 | Msa1390270:CDS | 35.0% | |
| ACACAAGATGAAAACCAAGA+TGG | + | tig0021333:19690-19709 | Msa1390270:CDS | 35.0% | |
| GTAATTTCACTATATGCAGC+AGG | + | tig0021333:19755-19774 | Msa1390270:exon | 35.0% | |
| TATATGCAGCAGGTTCATTA+TGG | + | tig0021333:19765-19784 | Msa1390270:three_prime_UTR | 35.0% | |
| ATAGATAGAGAGAAGGGTAG+AGG | + | tig0021333:17490-17509 | Msa1390270:five_prime_UTR | 40.0% | |
| TAGATAGAGAGAAGGGTAGA+GGG | + | tig0021333:17491-17510 | Msa1390270:five_prime_UTR | 40.0% | |
| TGAATTGGTGGAATTGGTCA+GGG | - | tig0021333:17667-17686 | None:intergenic | 40.0% | |
| ATGAATTGGTGGAATTGGTC+AGG | - | tig0021333:17668-17687 | None:intergenic | 40.0% | |
| !! | TTTGGTGTTGAAAGAGGGAA+AGG | - | tig0021333:17731-17750 | None:intergenic | 40.0% |
| !! | ATTGATGATGTTGAGAAGGG+TGG | - | tig0021333:17793-17812 | None:intergenic | 40.0% |
| !! | GGCAATTGATGATGTTGAGA+AGG | - | tig0021333:17797-17816 | None:intergenic | 40.0% |
| !! | AGATTAGGTTGAACTTGGAG+TGG | - | tig0021333:17818-17837 | None:intergenic | 40.0% |
| !! | GCAAGAGATTAGGTTGAACT+TGG | - | tig0021333:17823-17842 | None:intergenic | 40.0% |
| ! | TGTAAAGGGTGCAAGAGATT+AGG | - | tig0021333:17833-17852 | None:intergenic | 40.0% |
| TTCCTCAACTCATTGATCCT+TGG | + | tig0021333:17942-17961 | Msa1390270:CDS | 40.0% | |
| TTTGAAGATCAGATCCAGCA+TGG | + | tig0021333:17988-18007 | Msa1390270:CDS | 40.0% | |
| TTGGTTCCCAGATTTCACTT+GGG | + | tig0021333:18015-18034 | Msa1390270:CDS | 40.0% | |
| CATGTTCCCAAGTGAAATCT+GGG | - | tig0021333:18024-18043 | None:intergenic | 40.0% | |
| ACATGTTCCCAAGTGAAATC+TGG | - | tig0021333:18025-18044 | None:intergenic | 40.0% | |
| GTGTTTGTGAGCTGAATTGA+AGG | - | tig0021333:18283-18302 | None:intergenic | 40.0% | |
| !! | TTTTGGTCCTATTTCTCTCG+AGG | - | tig0021333:18325-18344 | None:intergenic | 40.0% |
| ! | ACGTAGTGCTGAAAAATGCA+AGG | + | tig0021333:18495-18514 | Msa1390270:CDS | 40.0% |
| AAGAGGTTTATCAAGGTGGT+GGG | + | tig0021333:18614-18633 | Msa1390270:CDS | 40.0% | |
| TTGAATCCTCCTCTACATGA+GGG | - | tig0021333:18702-18721 | None:intergenic | 40.0% | |
| TGTAGAGGAGGATTCAAGAA+TGG | + | tig0021333:18705-18724 | Msa1390270:CDS | 40.0% | |
| GAAGAAGAGGTAGTTGAGAA+AGG | + | tig0021333:18754-18773 | Msa1390270:CDS | 40.0% | |
| GAGAAGAAGAGGAAAAGATC+AGG | + | tig0021333:18790-18809 | Msa1390270:CDS | 40.0% | |
| ! | TAAGGGTTTTTGTGAGAGTG+TGG | + | tig0021333:18834-18853 | Msa1390270:CDS | 40.0% |
| GAGTGTGGTGAAGAAAATGA+TGG | + | tig0021333:18849-18868 | Msa1390270:CDS | 40.0% | |
| AGCTTGGAAGAAACAAGAGA+TGG | + | tig0021333:18948-18967 | Msa1390270:CDS | 40.0% | |
| !! | GAACAAAGAGCTTGAGTTGA+TGG | + | tig0021333:18978-18997 | Msa1390270:CDS | 40.0% |
| GAGACGATATTGGTAGAAGA+TGG | + | tig0021333:19313-19332 | Msa1390270:CDS | 40.0% | |
| ATGGCCAAAAGATGAAGTGT+TGG | + | tig0021333:19332-19351 | Msa1390270:CDS | 40.0% | |
| GGAAGGAAATAGCAACAACA+AGG | + | tig0021333:19395-19414 | Msa1390270:CDS | 40.0% | |
| TGTGAAATTCTCTCCCAAAG+TGG | - | tig0021333:19423-19442 | None:intergenic | 40.0% | |
| ! | CTTTGGGAGAGAATTTCACA+AGG | + | tig0021333:19423-19442 | Msa1390270:CDS | 40.0% |
| TCACAAGGAATGTTGGAGTT+AGG | + | tig0021333:19438-19457 | Msa1390270:CDS | 40.0% | |
| ! | GATACAAGAGAAGTGCAAAG+AGG | + | tig0021333:19460-19479 | Msa1390270:CDS | 40.0% |
| ! | AAAGAGGTGCAAAGAGAAGT+GGG | + | tig0021333:19476-19495 | Msa1390270:CDS | 40.0% |
| GAATGTGGCTGAAGAAAATG+TGG | + | tig0021333:19653-19672 | Msa1390270:CDS | 40.0% | |
| TAGTGAAATTACCAGCTTGG+AGG | - | tig0021333:19747-19766 | None:intergenic | 40.0% | |
| AGAGGGAAAGGTAAGTGAAG+AGG | - | tig0021333:17719-17738 | None:intergenic | 45.0% | |
| ! | CATCTTTGTGGGGGTGTAAA+GGG | - | tig0021333:17847-17866 | None:intergenic | 45.0% |
| ! | TCATCTTTGTGGGGGTGTAA+AGG | - | tig0021333:17848-17867 | None:intergenic | 45.0% |
| GTCCAAGGATCAATGAGTTG+AGG | - | tig0021333:17947-17966 | None:intergenic | 45.0% | |
| ! | GTTGGTTCCCAGATTTCACT+TGG | + | tig0021333:18014-18033 | Msa1390270:CDS | 45.0% |
| TCACTTGGGAACATGTCTCA+AGG | + | tig0021333:18029-18048 | Msa1390270:CDS | 45.0% | |
| GTGTGTCTTTGTCTACCACA+TGG | - | tig0021333:18255-18274 | None:intergenic | 45.0% | |
| ACACACACCTCGAGAGAAAT+AGG | + | tig0021333:18315-18334 | Msa1390270:intron | 45.0% | |
| ! | GTTTGTTACTGAGCTGGAAG+AGG | + | tig0021333:18597-18616 | Msa1390270:CDS | 45.0% |
| GAGCTGGAAGAGGTTTATCA+AGG | + | tig0021333:18607-18626 | Msa1390270:CDS | 45.0% | |
| CTGGAAGAGGTTTATCAAGG+TGG | + | tig0021333:18610-18629 | Msa1390270:CDS | 45.0% | |
| GAAGAGGTTTATCAAGGTGG+TGG | + | tig0021333:18613-18632 | Msa1390270:CDS | 45.0% | |
| AGAGGTTTATCAAGGTGGTG+GGG | + | tig0021333:18615-18634 | Msa1390270:CDS | 45.0% | |
| GAACGAGGTGCAAGACAAAA+TGG | + | tig0021333:18675-18694 | Msa1390270:CDS | 45.0% | |
| CAAAATGGACCCTCATGTAG+AGG | + | tig0021333:18690-18709 | Msa1390270:CDS | 45.0% | |
| CTTGAATCCTCCTCTACATG+AGG | - | tig0021333:18703-18722 | None:intergenic | 45.0% | |
| GCACATGAACAAGCTATTGC+TGG | + | tig0021333:19000-19019 | Msa1390270:CDS | 45.0% | |
| GCACTCACAAAACCCTAATC+CGG | + | tig0021333:19155-19174 | Msa1390270:CDS | 45.0% | |
| GAGCTAGGGTTTACAGGTAT+TGG | - | tig0021333:19204-19223 | None:intergenic | 45.0% | |
| AAGAAGGAAGGGTTGAGCTA+GGG | - | tig0021333:19218-19237 | None:intergenic | 45.0% | |
| GAAATAGGGTTGTTCTTGCG+AGG | - | tig0021333:19264-19283 | None:intergenic | 45.0% | |
| ! | CAACAACAAGGCACCACTTT+GGG | + | tig0021333:19407-19426 | Msa1390270:CDS | 45.0% |
| ! | CAAAGAGGTGCAAAGAGAAG+TGG | + | tig0021333:19475-19494 | Msa1390270:CDS | 45.0% |
| GATGAAAACCAAGATGGTGC+TGG | + | tig0021333:19696-19715 | Msa1390270:CDS | 45.0% | |
| ATGCAGCAGGTTCATTATGG+AGG | + | tig0021333:19768-19787 | Msa1390270:three_prime_UTR | 45.0% | |
| TCAGATCCAGCATGGAGAGT+TGG | + | tig0021333:17996-18015 | Msa1390270:CDS | 50.0% | |
| ! | GAGGTTTATCAAGGTGGTGG+GGG | + | tig0021333:18616-18635 | Msa1390270:CDS | 50.0% |
| AATGGACCCTCATGTAGAGG+AGG | + | tig0021333:18693-18712 | Msa1390270:CDS | 50.0% | |
| AGGGTTGAGCTAGGGTTTAC+AGG | - | tig0021333:19210-19229 | None:intergenic | 50.0% | |
| GAAGAAGGAAGGGTTGAGCT+AGG | - | tig0021333:19219-19238 | None:intergenic | 50.0% | |
| CTCTCTCGCTGCTCGATATA+AGG | - | tig0021333:19296-19315 | None:intergenic | 50.0% | |
| AGCAGCGAGAGAGACGATAT+TGG | + | tig0021333:19303-19322 | Msa1390270:CDS | 50.0% | |
| ! | GCAACAACAAGGCACCACTT+TGG | + | tig0021333:19406-19425 | Msa1390270:CDS | 50.0% |
| TGCAGGTGAGTCTTCTCAAG+TGG | + | tig0021333:19719-19738 | Msa1390270:CDS | 50.0% | |
| GCAGGTGAGTCTTCTCAAGT+GGG | + | tig0021333:19720-19739 | Msa1390270:CDS | 50.0% | |
| CAGGTGAGTCTTCTCAAGTG+GGG | + | tig0021333:19721-19740 | Msa1390270:CDS | 50.0% | |
| TGGGAACCAACTCTCCATGC+TGG | - | tig0021333:18005-18024 | None:intergenic | 55.0% | |
| CACAGGAAGCTAGCTGACGT+TGG | + | tig0021333:18466-18485 | Msa1390270:intron | 55.0% | |
| TGAGGCTGAAAAGGCGAACG+AGG | + | tig0021333:18660-18679 | Msa1390270:CDS | 55.0% | |
| !! | AACCAAGATGGTGCTGGTGC+AGG | + | tig0021333:19702-19721 | Msa1390270:CDS | 55.0% |
| CTCTCGAGGTGTGTGTCTCG+TGG | - | tig0021333:18311-18330 | None:intergenic | 60.0% | |
| CACCTGCACCAGCACCATCT+TGG | - | tig0021333:19707-19726 | None:intergenic | 60.0% | |
| CTCAAGTGGGGCCTCCAAGC+TGG | + | tig0021333:19733-19752 | Msa1390270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021333 | gene | 17478 | 20134 | 17478 | ID=Msa1390270;Name=Msa1390270 |
| tig0021333 | mRNA | 17478 | 20134 | 17478 | ID=Msa1390270-mRNA-1;Parent=Msa1390270;Name=Msa1390270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=172|1|1|1|1|1|2|376|562 |
| tig0021333 | exon | 17478 | 18050 | 17478 | ID=Msa1390270-mRNA-1:exon:12089;Parent=Msa1390270-mRNA-1 |
| tig0021333 | exon | 18471 | 20134 | 18471 | ID=Msa1390270-mRNA-1:exon:12090;Parent=Msa1390270-mRNA-1 |
| tig0021333 | five_prime_UTR | 17478 | 17649 | 17478 | ID=Msa1390270-mRNA-1:five_prime_utr;Parent=Msa1390270-mRNA-1 |
| tig0021333 | CDS | 17650 | 18050 | 17650 | ID=Msa1390270-mRNA-1:cds;Parent=Msa1390270-mRNA-1 |
| tig0021333 | CDS | 18471 | 19758 | 18471 | ID=Msa1390270-mRNA-1:cds;Parent=Msa1390270-mRNA-1 |
| tig0021333 | three_prime_UTR | 19759 | 20134 | 19759 | ID=Msa1390270-mRNA-1:three_prime_utr;Parent=Msa1390270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
