AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520550 MtrunA17_Chr3g0136321 95.951 247 4 3 1 243 1 245 2.06e-168 464
Msa0520550 MtrunA17_Chr4g0000421 47.368 76 35 3 118 189 132 206 9.69e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520550 AT5G21920.1 60.656 183 60 2 48 230 64 234 5.97e-70 215
Msa0520550 AT5G21920.2 59.813 107 42 1 48 154 64 169 5.32e-36 125
Msa0520550 AT4G27990.1 50.000 78 34 3 118 191 135 211 2.30e-14 70.1
Msa0520550 AT3G07430.1 48.718 78 35 3 118 191 149 225 4.28e-14 69.7

Find 94 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATGGAGGGGAGAAAT+TGG 0.246722 3_4:+73093889 None:intergenic
GCATGTATGTTCATTTAAAT+AGG 0.259403 3_4:-73091973 Msa0520550:three_prime_UTR
TTGGGGCAAACACAAATAAA+AGG 0.293594 3_4:+73091771 None:intergenic
CATTCTTACAGAATAGAAAA+TGG 0.329472 3_4:-73094032 Msa0520550:exon
AGAGAGTAGTTTGTTTAAGA+AGG 0.343444 3_4:+73093811 None:intergenic
AAGATTATCTATCTCATTGC+AGG 0.355844 3_4:-73094086 Msa0520550:five_prime_UTR
ATTATCGACGGCGTTGGAAA+TGG 0.365129 3_4:+73093871 None:intergenic
TGCAAATTAAAACATCATAA+TGG 0.366439 3_4:-73092012 Msa0520550:exon
ACGGAGCTCAGACAGGATAA+TGG 0.369911 3_4:+73094061 None:intergenic
TTGAGAAAGGGGAATGCTAA+TGG 0.370536 3_4:+73093923 None:intergenic
GCTGGCTTAGTGGTGGCTAA+TGG 0.379478 3_4:-73093591 Msa0520550:CDS
AGCTAAGGAGTGGAGAAGTT+TGG 0.382379 3_4:+73093844 None:intergenic
TTACCTGGTGATTCCGTGGC+TGG 0.385685 3_4:-73093609 Msa0520550:CDS
GAGAGTAGTTTGTTTAAGAA+GGG 0.386231 3_4:+73093812 None:intergenic
TGAGAAAGGGGAATGCTAAT+GGG 0.387303 3_4:+73093924 None:intergenic
TAACCTGTAGGCACGTGTTA+TGG 0.398782 3_4:+73093774 None:intergenic
TCTGTGACTGGAAGCTCGGC+AGG 0.426280 3_4:+73092146 None:intergenic
TTACTTCTTCACAGAACAAA+TGG 0.426880 3_4:-73092076 Msa0520550:CDS
CTGCCATCGTTGCTCCTCTC+AGG 0.431185 3_4:-73093491 Msa0520550:intron
CGGAGCTCAGACAGGATAAT+GGG 0.435288 3_4:+73094062 None:intergenic
ACAACACCTTGCTCGTTGCC+AGG 0.436913 3_4:-73093545 Msa0520550:CDS
AGGGGAGAAATTGGAGATGG+GGG 0.451216 3_4:+73093898 None:intergenic
TTAAATAGTACGAGAATTCA+AGG 0.452730 3_4:+73091830 None:intergenic
TTGCCAGGCTTGTTCTTACC+TGG 0.458380 3_4:-73093530 Msa0520550:CDS
GAGGGGAGAAATTGGAGATG+GGG 0.461207 3_4:+73093897 None:intergenic
TGAGGCGGCTTCAAGGGATC+GGG 0.461867 3_4:-73092052 Msa0520550:CDS
TGATTCCGTGGCTGGCTTAG+TGG 0.463142 3_4:-73093601 Msa0520550:CDS
CCACGGAATACATTCAAATA+CGG 0.466648 3_4:+73092257 None:intergenic
ATGAGGCGGCTTCAAGGGAT+CGG 0.480718 3_4:-73092053 Msa0520550:CDS
AAATGGATGAGGCGGCTTCA+AGG 0.483527 3_4:-73092059 Msa0520550:CDS
ACGATGGCAGGAGGAGCGTT+AGG 0.485173 3_4:+73093504 None:intergenic
CAGAACAAGGAATGCAAGGA+TGG 0.486196 3_4:+73092199 None:intergenic
TGCTTAGATTGTTCTGTGAC+TGG 0.486287 3_4:+73092134 None:intergenic
AATGGATGAGGCGGCTTCAA+GGG 0.495750 3_4:-73092058 Msa0520550:CDS
GGAGGGGAGAAATTGGAGAT+GGG 0.501879 3_4:+73093896 None:intergenic
GAGAAAGGGGAATGCTAATG+GGG 0.512370 3_4:+73093925 None:intergenic
TTCACAGTTATCATTGTCCT+AGG 0.515394 3_4:-73091937 Msa0520550:three_prime_UTR
AGAGTAGTTTGTTTAAGAAG+GGG 0.518070 3_4:+73093813 None:intergenic
TGGAGGGGAGAAATTGGAGA+TGG 0.518639 3_4:+73093895 None:intergenic
CTGAGAGGAGCAACGATGGC+AGG 0.520472 3_4:+73093492 None:intergenic
GGAACAATTATCGACGGCGT+TGG 0.521064 3_4:+73093865 None:intergenic
ATTCCATAACACGTGCCTAC+AGG 0.524499 3_4:-73093777 Msa0520550:intron
CGATATGATTCTAATAAACT+CGG 0.528042 3_4:+73091866 None:intergenic
GTAACTACAGGAACAGTAGT+AGG 0.539864 3_4:-73093665 Msa0520550:CDS
TGCAGCAGCAGTGCTAGTGA+AGG 0.542097 3_4:+73092172 None:intergenic
AGGAGGAGCGTTAGGAAACC+AGG 0.547677 3_4:+73093512 None:intergenic
AAACCAGGTAAGAACAAGCC+TGG 0.548754 3_4:+73093527 None:intergenic
GAACTCTACGGAGCTCAGAC+AGG 0.548853 3_4:+73094054 None:intergenic
CTTCGTTTCTGTATCAGTGG+TGG 0.549154 3_4:+73093982 None:intergenic
TTGTTCTGTGACTGGAAGCT+CGG 0.549622 3_4:+73092142 None:intergenic
GGCGTTGGAAATGGATGGAG+GGG 0.557766 3_4:+73093880 None:intergenic
CTTCTTCGTTTCTGTATCAG+TGG 0.559382 3_4:+73093979 None:intergenic
CGTATTTGAATGTATTCCGT+GGG 0.560273 3_4:-73092256 Msa0520550:CDS
GCTCGAAAATTGTGTTGCCT+AGG 0.562650 3_4:+73091920 None:intergenic
AACAAGCCTGGCAACGAGCA+AGG 0.565234 3_4:+73093539 None:intergenic
TAGAAAATGGCCGTTATGAA+CGG 0.567715 3_4:-73094019 Msa0520550:exon
TAAATAGTACGAGAATTCAA+GGG 0.568271 3_4:+73091831 None:intergenic
CCGTATTTGAATGTATTCCG+TGG 0.568529 3_4:-73092257 Msa0520550:CDS
CACGGAATACATTCAAATAC+GGG 0.572341 3_4:+73092258 None:intergenic
AGATTCGGTGCAGTAACTAC+AGG 0.574341 3_4:-73093677 Msa0520550:CDS
AGAGATCCAGTCCACCGAGA+GGG 0.575748 3_4:+73092225 None:intergenic
ATTCAAATACGGGTCACATA+CGG 0.577203 3_4:+73092268 None:intergenic
CGGCGTTGGAAATGGATGGA+GGG 0.581108 3_4:+73093879 None:intergenic
AGATCCAGTCCACCGAGAGG+GGG 0.582086 3_4:+73092227 None:intergenic
AGAACAAGGAATGCAAGGAT+GGG 0.585406 3_4:+73092200 None:intergenic
TCGACGGCGTTGGAAATGGA+TGG 0.585432 3_4:+73093875 None:intergenic
TAGTGAAGGCATTCAGAACA+AGG 0.586028 3_4:+73092186 None:intergenic
CATTCAGAACAAGGAATGCA+AGG 0.587879 3_4:+73092195 None:intergenic
CACAGAACAAATGGATGAGG+CGG 0.594547 3_4:-73092067 Msa0520550:CDS
AAGCCAGCCACGGAATCACC+AGG 0.598530 3_4:+73093606 None:intergenic
TTCTGTAAGAATGAACTCTA+CGG 0.599286 3_4:+73094042 None:intergenic
ACGGCGTTGGAAATGGATGG+AGG 0.600079 3_4:+73093878 None:intergenic
GATCCAGTCCACCGAGAGGG+GGG 0.602974 3_4:+73092228 None:intergenic
CTGTGACTGGAAGCTCGGCA+GGG 0.604955 3_4:+73092147 None:intergenic
TGTGAAGAAGTAACGTCGGT+AGG 0.608391 3_4:+73092086 None:intergenic
GGCAAACACAAATAAAAGGA+AGG 0.615144 3_4:+73091775 None:intergenic
CGAGTCGCAACCGTTCATAA+CGG 0.615766 3_4:+73094009 None:intergenic
CTTCACAGAACAAATGGATG+AGG 0.621441 3_4:-73092070 Msa0520550:CDS
TTCCGTGGCTGGCTTAGTGG+TGG 0.624704 3_4:-73093598 Msa0520550:CDS
TGACCTGAGAGGAGCAACGA+TGG 0.624970 3_4:+73093488 None:intergenic
GAGATCCAGTCCACCGAGAG+GGG 0.626757 3_4:+73092226 None:intergenic
AGAGGAGCAACGATGGCAGG+AGG 0.633054 3_4:+73093495 None:intergenic
GTCACAGAACAATCTAAGCA+AGG 0.634902 3_4:-73092131 Msa0520550:CDS
ACTACAGGAACAGTAGTAGG+TGG 0.635762 3_4:-73093662 Msa0520550:CDS
AGCCACCACTAAGCCAGCCA+CGG 0.636007 3_4:+73093596 None:intergenic
AAGTTTGGAACAATTATCGA+CGG 0.638484 3_4:+73093859 None:intergenic
TTAAATGAACATACATGCAG+AGG 0.640529 3_4:+73091978 None:intergenic
AAATAGTACGAGAATTCAAG+GGG 0.649880 3_4:+73091832 None:intergenic
GCACGTGTTATGGAATTGAG+AGG 0.651865 3_4:+73093784 None:intergenic
GAGAGATCCAGTCCACCGAG+AGG 0.664113 3_4:+73092224 None:intergenic
CTACAGGAACAGTAGTAGGT+GGG 0.671134 3_4:-73093661 Msa0520550:CDS
GTTCTGTGAAGAAGTAACGT+CGG 0.698371 3_4:+73092082 None:intergenic
TAACATGTGACTGACCTGAG+AGG 0.738072 3_4:+73093477 None:intergenic
GGAATCACCAGGTAAAACAG+CGG 0.751307 3_4:+73093617 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGAAAATTATAGTAGAA+TGG - chr3_4:73092491-73092510 Msa0520550:intron 20.0%
!!! ATTTTTTTTGTTGAAATGCA+AGG - chr3_4:73092575-73092594 Msa0520550:intron 20.0%
!!! TTTTTTTTGTTGAAATGCAA+GGG - chr3_4:73092576-73092595 Msa0520550:intron 20.0%
!! TTGAATTATTAACAAAGTCA+CGG + chr3_4:73092673-73092692 None:intergenic 20.0%
!! TATCATTTCTCTTAGAAAAA+TGG - chr3_4:73093080-73093099 Msa0520550:intron 20.0%
!! ATCATTTCTCTTAGAAAAAT+GGG - chr3_4:73093081-73093100 Msa0520550:intron 20.0%
!!! TCAAATATTTTCTACGTAAA+TGG + chr3_4:73093404-73093423 None:intergenic 20.0%
!! TGCAAATTAAAACATCATAA+TGG - chr3_4:73093906-73093925 Msa0520550:CDS 20.0%
!! AAAAATATCATATGAATCAC+AGG + chr3_4:73094023-73094042 None:intergenic 20.0%
!! GATAGAAAATTATAGTAGAA+TGG - chr3_4:73092491-73092510 Msa0520550:intron 20.0%
!!! ATTTTTTTTGTTGAAATGCA+AGG - chr3_4:73092575-73092594 Msa0520550:intron 20.0%
!!! TTTTTTTTGTTGAAATGCAA+GGG - chr3_4:73092576-73092595 Msa0520550:intron 20.0%
!! TTGAATTATTAACAAAGTCA+CGG + chr3_4:73092673-73092692 None:intergenic 20.0%
!! TATCATTTCTCTTAGAAAAA+TGG - chr3_4:73093080-73093099 Msa0520550:intron 20.0%
!! ATCATTTCTCTTAGAAAAAT+GGG - chr3_4:73093081-73093100 Msa0520550:intron 20.0%
!!! TCAAATATTTTCTACGTAAA+TGG + chr3_4:73093404-73093423 None:intergenic 20.0%
!! TGCAAATTAAAACATCATAA+TGG - chr3_4:73093906-73093925 Msa0520550:CDS 20.0%
!! AAAAATATCATATGAATCAC+AGG + chr3_4:73094023-73094042 None:intergenic 20.0%
! CATTCTTACAGAATAGAAAA+TGG - chr3_4:73091886-73091905 Msa0520550:three_prime_UTR 25.0%
! GAAAATTATAGTAGAATGGT+TGG - chr3_4:73092495-73092514 Msa0520550:intron 25.0%
!! AAAATTTTATCTTCCATGAG+TGG - chr3_4:73092534-73092553 Msa0520550:intron 25.0%
! TATCATGTGACAAAAACATA+GGG + chr3_4:73092734-73092753 None:intergenic 25.0%
! TTATCATGTGACAAAAACAT+AGG + chr3_4:73092735-73092754 None:intergenic 25.0%
!!! TATGTTTTTGTCACATGATA+AGG - chr3_4:73092734-73092753 Msa0520550:intron 25.0%
!!! ATGTTTTTGTCACATGATAA+GGG - chr3_4:73092735-73092754 Msa0520550:intron 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG - chr3_4:73092790-73092809 Msa0520550:intron 25.0%
!! AACTCTTTTCTAATTGAGTA+TGG + chr3_4:73092882-73092901 None:intergenic 25.0%
! TAAGAGAAATGATACTTGTA+GGG + chr3_4:73093074-73093093 None:intergenic 25.0%
!! ACCATTTGATTTCAATCAAA+TGG + chr3_4:73093281-73093300 None:intergenic 25.0%
!!! TTTTGGTAATTTAACGTAGA+TGG + chr3_4:73093462-73093481 None:intergenic 25.0%
!! GCATCATACATCAAATATTT+TGG + chr3_4:73093479-73093498 None:intergenic 25.0%
! CATGAAATAATTAGCTACAT+TGG + chr3_4:73093556-73093575 None:intergenic 25.0%
! ACAACATACACAGATTTAAT+TGG - chr3_4:73093580-73093599 Msa0520550:CDS 25.0%
! GCATGTATGTTCATTTAAAT+AGG - chr3_4:73093945-73093964 Msa0520550:CDS 25.0%
! CGATATGATTCTAATAAACT+CGG + chr3_4:73094055-73094074 None:intergenic 25.0%
! TAAATAGTACGAGAATTCAA+GGG + chr3_4:73094090-73094109 None:intergenic 25.0%
! TTAAATAGTACGAGAATTCA+AGG + chr3_4:73094091-73094110 None:intergenic 25.0%
! CATTCTTACAGAATAGAAAA+TGG - chr3_4:73091886-73091905 Msa0520550:three_prime_UTR 25.0%
! GAAAATTATAGTAGAATGGT+TGG - chr3_4:73092495-73092514 Msa0520550:intron 25.0%
!! AAAATTTTATCTTCCATGAG+TGG - chr3_4:73092534-73092553 Msa0520550:intron 25.0%
! TATCATGTGACAAAAACATA+GGG + chr3_4:73092734-73092753 None:intergenic 25.0%
! TTATCATGTGACAAAAACAT+AGG + chr3_4:73092735-73092754 None:intergenic 25.0%
!!! TATGTTTTTGTCACATGATA+AGG - chr3_4:73092734-73092753 Msa0520550:intron 25.0%
!!! ATGTTTTTGTCACATGATAA+GGG - chr3_4:73092735-73092754 Msa0520550:intron 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG - chr3_4:73092790-73092809 Msa0520550:intron 25.0%
!! AACTCTTTTCTAATTGAGTA+TGG + chr3_4:73092882-73092901 None:intergenic 25.0%
! TAAGAGAAATGATACTTGTA+GGG + chr3_4:73093074-73093093 None:intergenic 25.0%
!! ACCATTTGATTTCAATCAAA+TGG + chr3_4:73093281-73093300 None:intergenic 25.0%
!!! TTTTGGTAATTTAACGTAGA+TGG + chr3_4:73093462-73093481 None:intergenic 25.0%
!! GCATCATACATCAAATATTT+TGG + chr3_4:73093479-73093498 None:intergenic 25.0%
! CATGAAATAATTAGCTACAT+TGG + chr3_4:73093556-73093575 None:intergenic 25.0%
! ACAACATACACAGATTTAAT+TGG - chr3_4:73093580-73093599 Msa0520550:CDS 25.0%
! GCATGTATGTTCATTTAAAT+AGG - chr3_4:73093945-73093964 Msa0520550:CDS 25.0%
! CGATATGATTCTAATAAACT+CGG + chr3_4:73094055-73094074 None:intergenic 25.0%
! TAAATAGTACGAGAATTCAA+GGG + chr3_4:73094090-73094109 None:intergenic 25.0%
! TTAAATAGTACGAGAATTCA+AGG + chr3_4:73094091-73094110 None:intergenic 25.0%
AAGATTATCTATCTCATTGC+AGG - chr3_4:73091832-73091851 Msa0520550:three_prime_UTR 30.0%
TTCTGTAAGAATGAACTCTA+CGG + chr3_4:73091879-73091898 None:intergenic 30.0%
! AAGTTTGGAACAATTATCGA+CGG + chr3_4:73092062-73092081 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG + chr3_4:73092108-73092127 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG + chr3_4:73092109-73092128 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG + chr3_4:73092110-73092129 None:intergenic 30.0%
AATTATAGTAGAATGGTTGG+AGG - chr3_4:73092498-73092517 Msa0520550:intron 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG - chr3_4:73092688-73092707 Msa0520550:intron 30.0%
TTGTCAAAAGTTTCACAATC+GGG + chr3_4:73092762-73092781 None:intergenic 30.0%
CTTGTCAAAAGTTTCACAAT+CGG + chr3_4:73092763-73092782 None:intergenic 30.0%
! AGTGTTTCACGAATTGTTTT+TGG - chr3_4:73092942-73092961 Msa0520550:intron 30.0%
CTAAGAGAAATGATACTTGT+AGG + chr3_4:73093075-73093094 None:intergenic 30.0%
GCCATTTGATTGAAATCAAA+TGG - chr3_4:73093277-73093296 Msa0520550:intron 30.0%
! GATGATTGAAATTTTCTTGC+AGG - chr3_4:73093357-73093376 Msa0520550:intron 30.0%
GTAGAAAATATTTGAGTAGC+TGG - chr3_4:73093409-73093428 Msa0520550:intron 30.0%
CGTAGATGGTTAAATTCTAT+TGG + chr3_4:73093448-73093467 None:intergenic 30.0%
TTACTTCTTCACAGAACAAA+TGG - chr3_4:73093842-73093861 Msa0520550:CDS 30.0%
TTAAATGAACATACATGCAG+AGG + chr3_4:73093943-73093962 None:intergenic 30.0%
AAATAGTACGAGAATTCAAG+GGG + chr3_4:73094089-73094108 None:intergenic 30.0%
AAGATTATCTATCTCATTGC+AGG - chr3_4:73091832-73091851 Msa0520550:three_prime_UTR 30.0%
TTCTGTAAGAATGAACTCTA+CGG + chr3_4:73091879-73091898 None:intergenic 30.0%
! AAGTTTGGAACAATTATCGA+CGG + chr3_4:73092062-73092081 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG + chr3_4:73092108-73092127 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG + chr3_4:73092109-73092128 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG + chr3_4:73092110-73092129 None:intergenic 30.0%
AATTATAGTAGAATGGTTGG+AGG - chr3_4:73092498-73092517 Msa0520550:intron 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG - chr3_4:73092688-73092707 Msa0520550:intron 30.0%
TTGTCAAAAGTTTCACAATC+GGG + chr3_4:73092762-73092781 None:intergenic 30.0%
CTTGTCAAAAGTTTCACAAT+CGG + chr3_4:73092763-73092782 None:intergenic 30.0%
! AGTGTTTCACGAATTGTTTT+TGG - chr3_4:73092942-73092961 Msa0520550:intron 30.0%
CTAAGAGAAATGATACTTGT+AGG + chr3_4:73093075-73093094 None:intergenic 30.0%
GCCATTTGATTGAAATCAAA+TGG - chr3_4:73093277-73093296 Msa0520550:intron 30.0%
! GATGATTGAAATTTTCTTGC+AGG - chr3_4:73093357-73093376 Msa0520550:intron 30.0%
GTAGAAAATATTTGAGTAGC+TGG - chr3_4:73093409-73093428 Msa0520550:intron 30.0%
CGTAGATGGTTAAATTCTAT+TGG + chr3_4:73093448-73093467 None:intergenic 30.0%
TTACTTCTTCACAGAACAAA+TGG - chr3_4:73093842-73093861 Msa0520550:CDS 30.0%
TTAAATGAACATACATGCAG+AGG + chr3_4:73093943-73093962 None:intergenic 30.0%
AAATAGTACGAGAATTCAAG+GGG + chr3_4:73094089-73094108 None:intergenic 30.0%
TAGAAAATGGCCGTTATGAA+CGG - chr3_4:73091899-73091918 Msa0520550:three_prime_UTR 35.0%
! TGCAACTTTTACTAACCTGT+AGG + chr3_4:73092159-73092178 None:intergenic 35.0%
GAATGAGTAAACCACCAAAT+TGG - chr3_4:73092615-73092634 Msa0520550:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG + chr3_4:73092629-73092648 None:intergenic 35.0%
CACAAAGATAGGTACCAATT+TGG + chr3_4:73092632-73092651 None:intergenic 35.0%
! ACAAAGTCACGGACTAATTT+GGG + chr3_4:73092662-73092681 None:intergenic 35.0%
! AACAAAGTCACGGACTAATT+TGG + chr3_4:73092663-73092682 None:intergenic 35.0%
TTGGCAAAAGTTTCTCGATT+CGG - chr3_4:73092707-73092726 Msa0520550:intron 35.0%
TACAAAGATAGGGACCAATT+TGG - chr3_4:73092836-73092855 Msa0520550:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG + chr3_4:73092853-73092872 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG - chr3_4:73092853-73092872 Msa0520550:intron 35.0%
!!! CACGAATTGTTTTTGGTCAT+TGG - chr3_4:73092949-73092968 Msa0520550:intron 35.0%
TTCCACTTTAGTGGAATACA+TGG - chr3_4:73092975-73092994 Msa0520550:intron 35.0%
TCCACTTTAGTGGAATACAT+GGG - chr3_4:73092976-73092995 Msa0520550:intron 35.0%
GTGGTTACACAAGAATTACA+AGG - chr3_4:73092998-73093017 Msa0520550:intron 35.0%
ACACAAGAATTACAAGGTGA+AGG - chr3_4:73093004-73093023 Msa0520550:intron 35.0%
! AGAAAAATGGGATGCTTTTG+AGG - chr3_4:73093093-73093112 Msa0520550:intron 35.0%
ACACGTAAGTTCCATACTTA+AGG - chr3_4:73093152-73093171 Msa0520550:intron 35.0%
AATCCTATCGTCAATGCATT+TGG - chr3_4:73093253-73093272 Msa0520550:intron 35.0%
ATTCAAATACGGGTCACATA+CGG + chr3_4:73093653-73093672 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG + chr3_4:73093663-73093682 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG + chr3_4:73093664-73093683 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG - chr3_4:73093662-73093681 Msa0520550:CDS 35.0%
!!! GTTTTAATTTGCAGAAGTCG+AGG + chr3_4:73093899-73093918 None:intergenic 35.0%
TTCACAGTTATCATTGTCCT+AGG - chr3_4:73093981-73094000 Msa0520550:CDS 35.0%
GGCAAACACAAATAAAAGGA+AGG + chr3_4:73094146-73094165 None:intergenic 35.0%
!!! TTTGAACGTGGCTTGTTTTA+AGG + chr3_4:73091776-73091795 None:intergenic 35.0%
TAGAAAATGGCCGTTATGAA+CGG - chr3_4:73091899-73091918 Msa0520550:three_prime_UTR 35.0%
! TGCAACTTTTACTAACCTGT+AGG + chr3_4:73092159-73092178 None:intergenic 35.0%
GAATGAGTAAACCACCAAAT+TGG - chr3_4:73092615-73092634 Msa0520550:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG + chr3_4:73092629-73092648 None:intergenic 35.0%
CACAAAGATAGGTACCAATT+TGG + chr3_4:73092632-73092651 None:intergenic 35.0%
! ACAAAGTCACGGACTAATTT+GGG + chr3_4:73092662-73092681 None:intergenic 35.0%
! AACAAAGTCACGGACTAATT+TGG + chr3_4:73092663-73092682 None:intergenic 35.0%
TTGGCAAAAGTTTCTCGATT+CGG - chr3_4:73092707-73092726 Msa0520550:intron 35.0%
TACAAAGATAGGGACCAATT+TGG - chr3_4:73092836-73092855 Msa0520550:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG + chr3_4:73092853-73092872 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG - chr3_4:73092853-73092872 Msa0520550:intron 35.0%
!!! CACGAATTGTTTTTGGTCAT+TGG - chr3_4:73092949-73092968 Msa0520550:intron 35.0%
TTCCACTTTAGTGGAATACA+TGG - chr3_4:73092975-73092994 Msa0520550:intron 35.0%
TCCACTTTAGTGGAATACAT+GGG - chr3_4:73092976-73092995 Msa0520550:intron 35.0%
GTGGTTACACAAGAATTACA+AGG - chr3_4:73092998-73093017 Msa0520550:intron 35.0%
ACACAAGAATTACAAGGTGA+AGG - chr3_4:73093004-73093023 Msa0520550:intron 35.0%
! AGAAAAATGGGATGCTTTTG+AGG - chr3_4:73093093-73093112 Msa0520550:intron 35.0%
ACACGTAAGTTCCATACTTA+AGG - chr3_4:73093152-73093171 Msa0520550:intron 35.0%
AATCCTATCGTCAATGCATT+TGG - chr3_4:73093253-73093272 Msa0520550:intron 35.0%
ATTCAAATACGGGTCACATA+CGG + chr3_4:73093653-73093672 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG + chr3_4:73093663-73093682 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG + chr3_4:73093664-73093683 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG - chr3_4:73093662-73093681 Msa0520550:CDS 35.0%
!!! GTTTTAATTTGCAGAAGTCG+AGG + chr3_4:73093899-73093918 None:intergenic 35.0%
TTCACAGTTATCATTGTCCT+AGG - chr3_4:73093981-73094000 Msa0520550:CDS 35.0%
GGCAAACACAAATAAAAGGA+AGG + chr3_4:73094146-73094165 None:intergenic 35.0%
!! CACAGCTGTATTTTTGAACG+TGG + chr3_4:73091788-73091807 None:intergenic 40.0%
CACGTTCAAAAATACAGCTG+TGG - chr3_4:73091786-73091805 Msa0520550:three_prime_UTR 40.0%
TCAAAAATACAGCTGTGGTG+TGG - chr3_4:73091791-73091810 Msa0520550:three_prime_UTR 40.0%
CTTCTTCGTTTCTGTATCAG+TGG + chr3_4:73091942-73091961 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG - chr3_4:73091957-73091976 Msa0520550:three_prime_UTR 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG - chr3_4:73091958-73091977 Msa0520550:three_prime_UTR 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG - chr3_4:73091959-73091978 Msa0520550:three_prime_UTR 40.0%
TGAGAAAGGGGAATGCTAAT+GGG + chr3_4:73091997-73092016 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG + chr3_4:73091998-73092017 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG - chr3_4:73092226-73092245 Msa0520550:CDS 40.0%
GTAACTACAGGAACAGTAGT+AGG - chr3_4:73092253-73092272 Msa0520550:CDS 40.0%
!! AATTTTGCCGCTGTTTTACC+TGG - chr3_4:73092294-73092313 Msa0520550:intron 40.0%
GTCACATGTTAGTCACAATG+TGG - chr3_4:73092453-73092472 Msa0520550:intron 40.0%
AATGCACTGTTATCCACTCA+TGG + chr3_4:73092550-73092569 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG - chr3_4:73092825-73092844 Msa0520550:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG - chr3_4:73092826-73092845 Msa0520550:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG - chr3_4:73092839-73092858 Msa0520550:intron 40.0%
CATTGGATCTTCCACTTTAG+TGG - chr3_4:73092966-73092985 Msa0520550:intron 40.0%
ACCCATGTATTCCACTAAAG+TGG + chr3_4:73092980-73092999 None:intergenic 40.0%
ACTTTAGTGGAATACATGGG+TGG - chr3_4:73092979-73092998 Msa0520550:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG - chr3_4:73093096-73093115 Msa0520550:intron 40.0%
TTGAGGTGGTTGTGTTGAAA+AGG - chr3_4:73093110-73093129 Msa0520550:intron 40.0%
TGAGGTGGTTGTGTTGAAAA+GGG - chr3_4:73093111-73093130 Msa0520550:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG - chr3_4:73093157-73093176 Msa0520550:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG - chr3_4:73093158-73093177 Msa0520550:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG - chr3_4:73093206-73093225 Msa0520550:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG - chr3_4:73093207-73093226 Msa0520550:intron 40.0%
ACCTAGATTCTCTACGGTTA+GGG - chr3_4:73093230-73093249 Msa0520550:intron 40.0%
TTTGAGTAGCTGGATGCAAT+TGG - chr3_4:73093419-73093438 Msa0520550:intron 40.0%
CTTCACGTTTCTTCACTTCT+CGG - chr3_4:73093510-73093529 Msa0520550:CDS 40.0%
CCGTATTTGAATGTATTCCG+TGG - chr3_4:73093661-73093680 Msa0520550:CDS 40.0%
AGAACAAGGAATGCAAGGAT+GGG + chr3_4:73093721-73093740 None:intergenic 40.0%
CATTCAGAACAAGGAATGCA+AGG + chr3_4:73093726-73093745 None:intergenic 40.0%
!! TAGTGAAGGCATTCAGAACA+AGG + chr3_4:73093735-73093754 None:intergenic 40.0%
TGCTTAGATTGTTCTGTGAC+TGG + chr3_4:73093787-73093806 None:intergenic 40.0%
GTCACAGAACAATCTAAGCA+AGG - chr3_4:73093787-73093806 Msa0520550:CDS 40.0%
GTTCTGTGAAGAAGTAACGT+CGG + chr3_4:73093839-73093858 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG - chr3_4:73093848-73093867 Msa0520550:CDS 40.0%
!! CACAGCTGTATTTTTGAACG+TGG + chr3_4:73091788-73091807 None:intergenic 40.0%
CACGTTCAAAAATACAGCTG+TGG - chr3_4:73091786-73091805 Msa0520550:three_prime_UTR 40.0%
TCAAAAATACAGCTGTGGTG+TGG - chr3_4:73091791-73091810 Msa0520550:three_prime_UTR 40.0%
CTTCTTCGTTTCTGTATCAG+TGG + chr3_4:73091942-73091961 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG - chr3_4:73091957-73091976 Msa0520550:three_prime_UTR 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG - chr3_4:73091958-73091977 Msa0520550:three_prime_UTR 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG - chr3_4:73091959-73091978 Msa0520550:three_prime_UTR 40.0%
TGAGAAAGGGGAATGCTAAT+GGG + chr3_4:73091997-73092016 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG + chr3_4:73091998-73092017 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG - chr3_4:73092226-73092245 Msa0520550:CDS 40.0%
GTAACTACAGGAACAGTAGT+AGG - chr3_4:73092253-73092272 Msa0520550:CDS 40.0%
!! AATTTTGCCGCTGTTTTACC+TGG - chr3_4:73092294-73092313 Msa0520550:intron 40.0%
GTCACATGTTAGTCACAATG+TGG - chr3_4:73092453-73092472 Msa0520550:intron 40.0%
AATGCACTGTTATCCACTCA+TGG + chr3_4:73092550-73092569 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG - chr3_4:73092825-73092844 Msa0520550:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG - chr3_4:73092826-73092845 Msa0520550:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG - chr3_4:73092839-73092858 Msa0520550:intron 40.0%
CATTGGATCTTCCACTTTAG+TGG - chr3_4:73092966-73092985 Msa0520550:intron 40.0%
ACCCATGTATTCCACTAAAG+TGG + chr3_4:73092980-73092999 None:intergenic 40.0%
ACTTTAGTGGAATACATGGG+TGG - chr3_4:73092979-73092998 Msa0520550:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG - chr3_4:73093096-73093115 Msa0520550:intron 40.0%
TTGAGGTGGTTGTGTTGAAA+AGG - chr3_4:73093110-73093129 Msa0520550:intron 40.0%
TGAGGTGGTTGTGTTGAAAA+GGG - chr3_4:73093111-73093130 Msa0520550:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG - chr3_4:73093157-73093176 Msa0520550:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG - chr3_4:73093158-73093177 Msa0520550:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG - chr3_4:73093206-73093225 Msa0520550:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG - chr3_4:73093207-73093226 Msa0520550:intron 40.0%
ACCTAGATTCTCTACGGTTA+GGG - chr3_4:73093230-73093249 Msa0520550:intron 40.0%
TTTGAGTAGCTGGATGCAAT+TGG - chr3_4:73093419-73093438 Msa0520550:intron 40.0%
CTTCACGTTTCTTCACTTCT+CGG - chr3_4:73093510-73093529 Msa0520550:CDS 40.0%
CCGTATTTGAATGTATTCCG+TGG - chr3_4:73093661-73093680 Msa0520550:CDS 40.0%
AGAACAAGGAATGCAAGGAT+GGG + chr3_4:73093721-73093740 None:intergenic 40.0%
CATTCAGAACAAGGAATGCA+AGG + chr3_4:73093726-73093745 None:intergenic 40.0%
!! TAGTGAAGGCATTCAGAACA+AGG + chr3_4:73093735-73093754 None:intergenic 40.0%
TGCTTAGATTGTTCTGTGAC+TGG + chr3_4:73093787-73093806 None:intergenic 40.0%
GTCACAGAACAATCTAAGCA+AGG - chr3_4:73093787-73093806 Msa0520550:CDS 40.0%
GTTCTGTGAAGAAGTAACGT+CGG + chr3_4:73093839-73093858 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG - chr3_4:73093848-73093867 Msa0520550:CDS 40.0%
CTTCGTTTCTGTATCAGTGG+TGG + chr3_4:73091939-73091958 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG + chr3_4:73091996-73092015 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG + chr3_4:73092009-73092028 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG + chr3_4:73092010-73092029 None:intergenic 45.0%
AATGGATGGAGGGGAGAAAT+TGG + chr3_4:73092032-73092051 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG + chr3_4:73092050-73092069 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG + chr3_4:73092077-73092096 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG + chr3_4:73092087-73092106 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG + chr3_4:73092092-73092111 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG + chr3_4:73092137-73092156 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG - chr3_4:73092141-73092160 Msa0520550:CDS 45.0%
TAACCTGTAGGCACGTGTTA+TGG + chr3_4:73092147-73092166 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG + chr3_4:73092242-73092261 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG - chr3_4:73092241-73092260 Msa0520550:CDS 45.0%
ACTACAGGAACAGTAGTAGG+TGG - chr3_4:73092256-73092275 Msa0520550:CDS 45.0%
CTACAGGAACAGTAGTAGGT+GGG - chr3_4:73092257-73092276 Msa0520550:CDS 45.0%
GGAATCACCAGGTAAAACAG+CGG + chr3_4:73092304-73092323 None:intergenic 45.0%
! TGTTTTACCTGGTGATTCCG+TGG - chr3_4:73092305-73092324 Msa0520550:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG + chr3_4:73092394-73092413 None:intergenic 45.0%
TAACATGTGACTGACCTGAG+AGG + chr3_4:73092444-73092463 None:intergenic 45.0%
TTTGTTGAAATGCAAGGGCG+TGG - chr3_4:73092581-73092600 Msa0520550:intron 45.0%
! TTGTTGAAATGCAAGGGCGT+GGG - chr3_4:73092582-73092601 Msa0520550:intron 45.0%
TGGGAGTAGCTCACAAAGAT+AGG + chr3_4:73092643-73092662 None:intergenic 45.0%
!! CAATTCCCTGGCCTTAAGTA+TGG + chr3_4:73093166-73093185 None:intergenic 45.0%
TTAAGGCCAGGGAATTGCAA+TGG - chr3_4:73093169-73093188 Msa0520550:intron 45.0%
TAAGGCCAGGGAATTGCAAT+GGG - chr3_4:73093170-73093189 Msa0520550:intron 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG - chr3_4:73093187-73093206 Msa0520550:intron 45.0%
AGAGGGACCTAGATTCTCTA+CGG - chr3_4:73093224-73093243 Msa0520550:intron 45.0%
GACCTAGATTCTCTACGGTT+AGG - chr3_4:73093229-73093248 Msa0520550:intron 45.0%
TCCCTAACCGTAGAGAATCT+AGG + chr3_4:73093234-73093253 None:intergenic 45.0%
! GCTCCAAATGCATTGACGAT+AGG + chr3_4:73093259-73093278 None:intergenic 45.0%
GGATTCCCTAGATCAGATAG+TGG + chr3_4:73093383-73093402 None:intergenic 45.0%
CAGAACAAGGAATGCAAGGA+TGG + chr3_4:73093722-73093741 None:intergenic 45.0%
TTGTTCTGTGACTGGAAGCT+CGG + chr3_4:73093779-73093798 None:intergenic 45.0%
TGTGAAGAAGTAACGTCGGT+AGG + chr3_4:73093835-73093854 None:intergenic 45.0%
CACAGAACAAATGGATGAGG+CGG - chr3_4:73093851-73093870 Msa0520550:CDS 45.0%
GCTCGAAAATTGTGTTGCCT+AGG + chr3_4:73094001-73094020 None:intergenic 45.0%
CTTCGTTTCTGTATCAGTGG+TGG + chr3_4:73091939-73091958 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG + chr3_4:73091996-73092015 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG + chr3_4:73092009-73092028 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG + chr3_4:73092010-73092029 None:intergenic 45.0%
AATGGATGGAGGGGAGAAAT+TGG + chr3_4:73092032-73092051 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG + chr3_4:73092050-73092069 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG + chr3_4:73092077-73092096 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG + chr3_4:73092087-73092106 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG + chr3_4:73092092-73092111 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG + chr3_4:73092137-73092156 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG - chr3_4:73092141-73092160 Msa0520550:CDS 45.0%
TAACCTGTAGGCACGTGTTA+TGG + chr3_4:73092147-73092166 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG + chr3_4:73092242-73092261 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG - chr3_4:73092241-73092260 Msa0520550:CDS 45.0%
ACTACAGGAACAGTAGTAGG+TGG - chr3_4:73092256-73092275 Msa0520550:CDS 45.0%
CTACAGGAACAGTAGTAGGT+GGG - chr3_4:73092257-73092276 Msa0520550:CDS 45.0%
GGAATCACCAGGTAAAACAG+CGG + chr3_4:73092304-73092323 None:intergenic 45.0%
! TGTTTTACCTGGTGATTCCG+TGG - chr3_4:73092305-73092324 Msa0520550:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG + chr3_4:73092394-73092413 None:intergenic 45.0%
TAACATGTGACTGACCTGAG+AGG + chr3_4:73092444-73092463 None:intergenic 45.0%
TTTGTTGAAATGCAAGGGCG+TGG - chr3_4:73092581-73092600 Msa0520550:intron 45.0%
! TTGTTGAAATGCAAGGGCGT+GGG - chr3_4:73092582-73092601 Msa0520550:intron 45.0%
TGGGAGTAGCTCACAAAGAT+AGG + chr3_4:73092643-73092662 None:intergenic 45.0%
!! CAATTCCCTGGCCTTAAGTA+TGG + chr3_4:73093166-73093185 None:intergenic 45.0%
TTAAGGCCAGGGAATTGCAA+TGG - chr3_4:73093169-73093188 Msa0520550:intron 45.0%
TAAGGCCAGGGAATTGCAAT+GGG - chr3_4:73093170-73093189 Msa0520550:intron 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG - chr3_4:73093187-73093206 Msa0520550:intron 45.0%
AGAGGGACCTAGATTCTCTA+CGG - chr3_4:73093224-73093243 Msa0520550:intron 45.0%
GACCTAGATTCTCTACGGTT+AGG - chr3_4:73093229-73093248 Msa0520550:intron 45.0%
TCCCTAACCGTAGAGAATCT+AGG + chr3_4:73093234-73093253 None:intergenic 45.0%
! GCTCCAAATGCATTGACGAT+AGG + chr3_4:73093259-73093278 None:intergenic 45.0%
GGATTCCCTAGATCAGATAG+TGG + chr3_4:73093383-73093402 None:intergenic 45.0%
CAGAACAAGGAATGCAAGGA+TGG + chr3_4:73093722-73093741 None:intergenic 45.0%
TTGTTCTGTGACTGGAAGCT+CGG + chr3_4:73093779-73093798 None:intergenic 45.0%
TGTGAAGAAGTAACGTCGGT+AGG + chr3_4:73093835-73093854 None:intergenic 45.0%
CACAGAACAAATGGATGAGG+CGG - chr3_4:73093851-73093870 Msa0520550:CDS 45.0%
GCTCGAAAATTGTGTTGCCT+AGG + chr3_4:73094001-73094020 None:intergenic 45.0%
CGGAGCTCAGACAGGATAAT+GGG + chr3_4:73091859-73091878 None:intergenic 50.0%
ACGGAGCTCAGACAGGATAA+TGG + chr3_4:73091860-73091879 None:intergenic 50.0%
CGAGTCGCAACCGTTCATAA+CGG + chr3_4:73091912-73091931 None:intergenic 50.0%
GGAGATGGGGGATTTGAGAA+AGG + chr3_4:73092011-73092030 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG + chr3_4:73092023-73092042 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG + chr3_4:73092024-73092043 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG + chr3_4:73092025-73092044 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG + chr3_4:73092026-73092045 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG + chr3_4:73092056-73092075 None:intergenic 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG - chr3_4:73092388-73092407 Msa0520550:intron 50.0%
! TGTTGAAATGCAAGGGCGTG+GGG - chr3_4:73092583-73092602 Msa0520550:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG - chr3_4:73092811-73092830 Msa0520550:intron 50.0%
! GGAATTGCAATGGGAGGTGT+TGG - chr3_4:73093179-73093198 Msa0520550:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG - chr3_4:73093191-73093210 Msa0520550:intron 50.0%
TGCAGGCCACTATCTGATCT+AGG - chr3_4:73093374-73093393 Msa0520550:intron 50.0%
GCAGGCCACTATCTGATCTA+GGG - chr3_4:73093375-73093394 Msa0520550:intron 50.0%
GAGTAGCTGGATGCAATTGG+TGG - chr3_4:73093422-73093441 Msa0520550:intron 50.0%
AAATGGATGAGGCGGCTTCA+AGG - chr3_4:73093859-73093878 Msa0520550:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG - chr3_4:73093860-73093879 Msa0520550:CDS 50.0%
CGGAGCTCAGACAGGATAAT+GGG + chr3_4:73091859-73091878 None:intergenic 50.0%
ACGGAGCTCAGACAGGATAA+TGG + chr3_4:73091860-73091879 None:intergenic 50.0%
CGAGTCGCAACCGTTCATAA+CGG + chr3_4:73091912-73091931 None:intergenic 50.0%
GGAGATGGGGGATTTGAGAA+AGG + chr3_4:73092011-73092030 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG + chr3_4:73092023-73092042 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG + chr3_4:73092024-73092043 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG + chr3_4:73092025-73092044 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG + chr3_4:73092026-73092045 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG + chr3_4:73092056-73092075 None:intergenic 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG - chr3_4:73092388-73092407 Msa0520550:intron 50.0%
! TGTTGAAATGCAAGGGCGTG+GGG - chr3_4:73092583-73092602 Msa0520550:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG - chr3_4:73092811-73092830 Msa0520550:intron 50.0%
! GGAATTGCAATGGGAGGTGT+TGG - chr3_4:73093179-73093198 Msa0520550:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG - chr3_4:73093191-73093210 Msa0520550:intron 50.0%
TGCAGGCCACTATCTGATCT+AGG - chr3_4:73093374-73093393 Msa0520550:intron 50.0%
GCAGGCCACTATCTGATCTA+GGG - chr3_4:73093375-73093394 Msa0520550:intron 50.0%
GAGTAGCTGGATGCAATTGG+TGG - chr3_4:73093422-73093441 Msa0520550:intron 50.0%
AAATGGATGAGGCGGCTTCA+AGG - chr3_4:73093859-73093878 Msa0520550:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG - chr3_4:73093860-73093879 Msa0520550:CDS 50.0%
GAACTCTACGGAGCTCAGAC+AGG + chr3_4:73091867-73091886 None:intergenic 55.0%
! GGCGTTGGAAATGGATGGAG+GGG + chr3_4:73092041-73092060 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGGA+GGG + chr3_4:73092042-73092061 None:intergenic 55.0%
! ACGGCGTTGGAAATGGATGG+AGG + chr3_4:73092043-73092062 None:intergenic 55.0%
! TCGACGGCGTTGGAAATGGA+TGG + chr3_4:73092046-73092065 None:intergenic 55.0%
TTACCTGGTGATTCCGTGGC+TGG - chr3_4:73092309-73092328 Msa0520550:intron 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG - chr3_4:73092317-73092336 Msa0520550:intron 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG - chr3_4:73092327-73092346 Msa0520550:intron 55.0%
ACAACACCTTGCTCGTTGCC+AGG - chr3_4:73092373-73092392 Msa0520550:intron 55.0%
AACAAGCCTGGCAACGAGCA+AGG + chr3_4:73092382-73092401 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG + chr3_4:73092409-73092428 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG + chr3_4:73092433-73092452 None:intergenic 55.0%
! CAAGGGCGTGGGGTTATTAG+TGG - chr3_4:73092593-73092612 Msa0520550:intron 55.0%
CACCTCCCATTGCAATTCCC+TGG + chr3_4:73093178-73093197 None:intergenic 55.0%
AGAGATCCAGTCCACCGAGA+GGG + chr3_4:73093696-73093715 None:intergenic 55.0%
TGCAGCAGCAGTGCTAGTGA+AGG + chr3_4:73093749-73093768 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG - chr3_4:73093865-73093884 Msa0520550:CDS 55.0%
GAACTCTACGGAGCTCAGAC+AGG + chr3_4:73091867-73091886 None:intergenic 55.0%
! GGCGTTGGAAATGGATGGAG+GGG + chr3_4:73092041-73092060 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGGA+GGG + chr3_4:73092042-73092061 None:intergenic 55.0%
! ACGGCGTTGGAAATGGATGG+AGG + chr3_4:73092043-73092062 None:intergenic 55.0%
! TCGACGGCGTTGGAAATGGA+TGG + chr3_4:73092046-73092065 None:intergenic 55.0%
TTACCTGGTGATTCCGTGGC+TGG - chr3_4:73092309-73092328 Msa0520550:intron 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG - chr3_4:73092317-73092336 Msa0520550:intron 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG - chr3_4:73092327-73092346 Msa0520550:intron 55.0%
ACAACACCTTGCTCGTTGCC+AGG - chr3_4:73092373-73092392 Msa0520550:intron 55.0%
AACAAGCCTGGCAACGAGCA+AGG + chr3_4:73092382-73092401 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG + chr3_4:73092409-73092428 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG + chr3_4:73092433-73092452 None:intergenic 55.0%
! CAAGGGCGTGGGGTTATTAG+TGG - chr3_4:73092593-73092612 Msa0520550:intron 55.0%
CACCTCCCATTGCAATTCCC+TGG + chr3_4:73093178-73093197 None:intergenic 55.0%
AGAGATCCAGTCCACCGAGA+GGG + chr3_4:73093696-73093715 None:intergenic 55.0%
TGCAGCAGCAGTGCTAGTGA+AGG + chr3_4:73093749-73093768 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG - chr3_4:73093865-73093884 Msa0520550:CDS 55.0%
AAGCCAGCCACGGAATCACC+AGG + chr3_4:73092315-73092334 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG - chr3_4:73092320-73092339 Msa0520550:intron 60.0%
AGCCACCACTAAGCCAGCCA+CGG + chr3_4:73092325-73092344 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG + chr3_4:73092417-73092436 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG + chr3_4:73092426-73092445 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG + chr3_4:73092429-73092448 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG - chr3_4:73092427-73092446 Msa0520550:intron 60.0%
GGCCAGGGAATTGCAATGGG+AGG - chr3_4:73093173-73093192 Msa0520550:intron 60.0%
AGATCCAGTCCACCGAGAGG+GGG + chr3_4:73093694-73093713 None:intergenic 60.0%
GAGATCCAGTCCACCGAGAG+GGG + chr3_4:73093695-73093714 None:intergenic 60.0%
GAGAGATCCAGTCCACCGAG+AGG + chr3_4:73093697-73093716 None:intergenic 60.0%
CTGTGACTGGAAGCTCGGCA+GGG + chr3_4:73093774-73093793 None:intergenic 60.0%
TCTGTGACTGGAAGCTCGGC+AGG + chr3_4:73093775-73093794 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG - chr3_4:73093866-73093885 Msa0520550:CDS 60.0%
AAGCCAGCCACGGAATCACC+AGG + chr3_4:73092315-73092334 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG - chr3_4:73092320-73092339 Msa0520550:intron 60.0%
AGCCACCACTAAGCCAGCCA+CGG + chr3_4:73092325-73092344 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG + chr3_4:73092417-73092436 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG + chr3_4:73092426-73092445 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG + chr3_4:73092429-73092448 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG - chr3_4:73092427-73092446 Msa0520550:intron 60.0%
GGCCAGGGAATTGCAATGGG+AGG - chr3_4:73093173-73093192 Msa0520550:intron 60.0%
AGATCCAGTCCACCGAGAGG+GGG + chr3_4:73093694-73093713 None:intergenic 60.0%
GAGATCCAGTCCACCGAGAG+GGG + chr3_4:73093695-73093714 None:intergenic 60.0%
GAGAGATCCAGTCCACCGAG+AGG + chr3_4:73093697-73093716 None:intergenic 60.0%
CTGTGACTGGAAGCTCGGCA+GGG + chr3_4:73093774-73093793 None:intergenic 60.0%
TCTGTGACTGGAAGCTCGGC+AGG + chr3_4:73093775-73093794 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG - chr3_4:73093866-73093885 Msa0520550:CDS 60.0%
CGAGAGGGGGGATAAGCCCA+CGG + chr3_4:73093681-73093700 None:intergenic 65.0%
CGTGGGCTTATCCCCCCTCT+CGG - chr3_4:73093679-73093698 Msa0520550:intron 65.0%
TATCCCCCCTCTCGGTGGAC+TGG - chr3_4:73093687-73093706 Msa0520550:intron 65.0%
GATCCAGTCCACCGAGAGGG+GGG + chr3_4:73093693-73093712 None:intergenic 65.0%
CGAGAGGGGGGATAAGCCCA+CGG + chr3_4:73093681-73093700 None:intergenic 65.0%
CGTGGGCTTATCCCCCCTCT+CGG - chr3_4:73093679-73093698 Msa0520550:intron 65.0%
TATCCCCCCTCTCGGTGGAC+TGG - chr3_4:73093687-73093706 Msa0520550:intron 65.0%
GATCCAGTCCACCGAGAGGG+GGG + chr3_4:73093693-73093712 None:intergenic 65.0%
GGGCTTATCCCCCCTCTCGG+TGG - chr3_4:73093682-73093701 Msa0520550:intron 70.0%
GGGCTTATCCCCCCTCTCGG+TGG - chr3_4:73093682-73093701 Msa0520550:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73091775 73094165 73091775 ID=Msa0520550;Name=Msa0520550
chr3_4 mRNA 73091775 73094165 73091775 ID=Msa0520550-mRNA-1;Parent=Msa0520550;Name=Msa0520550-mRNA-1;_AED=0.19;_eAED=0.19;_QI=130|1|1|1|1|1|3|250|243
chr3_4 exon 73091775 73092292 73091775 ID=Msa0520550-mRNA-1:exon:20436;Parent=Msa0520550-mRNA-1
chr3_4 exon 73093492 73093697 73093492 ID=Msa0520550-mRNA-1:exon:20435;Parent=Msa0520550-mRNA-1
chr3_4 exon 73093778 73094165 73093778 ID=Msa0520550-mRNA-1:exon:20434;Parent=Msa0520550-mRNA-1
chr3_4 five_prime_UTR 73094036 73094165 73094036 ID=Msa0520550-mRNA-1:five_prime_utr;Parent=Msa0520550-mRNA-1
chr3_4 CDS 73093778 73094035 73093778 ID=Msa0520550-mRNA-1:cds;Parent=Msa0520550-mRNA-1
chr3_4 CDS 73093492 73093697 73093492 ID=Msa0520550-mRNA-1:cds;Parent=Msa0520550-mRNA-1
chr3_4 CDS 73092025 73092292 73092025 ID=Msa0520550-mRNA-1:cds;Parent=Msa0520550-mRNA-1
chr3_4 three_prime_UTR 73091775 73092024 73091775 ID=Msa0520550-mRNA-1:three_prime_utr;Parent=Msa0520550-mRNA-1
Gene Sequence

>Msa0520550

ATGGCCGTTATGAACGGTTGCGACTCGTCGTCCACCACTGATACAGAAACGAAGAAGAACGTCTCGTTTTGTTGGGGTAATTCTCAATCCCCATTAGCATTCCCCTTTCTCAAATCCCCCATCTCCAATTTCTCCCCTCCATCCATTTCCAACGCCGTCGATAATTGTTCCAAACTTCTCCACTCCTTAGCTTCTCAAAACCCCTTCTTAAACAAACTACTCTCTCTTTCCTCTCAATTCCATAACACGTGCCTACAGATTCGGTGCAGTAACTACAGGAACAGTAGTAGGTGGGTGAGTAATCATCACAATTTTGCCGCTGTTTTACCTGGTGATTCCGTGGCTGGCTTAGTGGTGGCTAATGGACTTAATAATTTTTTGAGTCTTTACAACACCTTGCTCGTTGCCAGGCTTGTTCTTACCTGGTTTCCTAACGCTCCTCCTGCCATCGTTGCTCCTCTCAGCACCGTATGTGACCCGTATTTGAATGTATTCCGTGGGCTTATCCCCCCTCTCGGTGGACTGGATCTCTCTCCCATCCTTGCATTCCTTGTTCTGAATGCCTTCACTAGCACTGCTGCTGCACTCCCTGCCGAGCTTCCAGTCACAGAACAATCTAAGCAAGGTCTTGAAGCAAGATTACAACAACCTACCGACGTTACTTCTTCACAGAACAAATGGATGAGGCGGCTTCAAGGGATCGGGTCAAAGACCTCGACTTCTGCAAATTAA

Protein sequence

>Msa0520550

MAVMNGCDSSSTTDTETKKNVSFCWGNSQSPLAFPFLKSPISNFSPPSISNAVDNCSKLLHSLASQNPFLNKLLSLSSQFHNTCLQIRCSNYRNSSRWVSNHHNFAAVLPGDSVAGLVVANGLNNFLSLYNTLLVARLVLTWFPNAPPAIVAPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTAAALPAELPVTEQSKQGLEARLQQPTDVTSSQNKWMRRLQGIGSKTSTSAN*