AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0397420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397420 MtrunA17_Chr3g0084881 95.337 193 8 1 1 192 1 193 5.40e-119 335
Msa0397420 MtrunA17_Chr3g0082061 55.000 60 26 1 88 146 16 75 6.74e-15 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397420 AT5G40950.1 63.500 200 61 5 1 192 3 198 1.27e-72 218
Msa0397420 AT5G15220.2 56.989 93 39 1 55 146 45 137 2.63e-24 93.6
Msa0397420 AT5G15220.1 56.989 93 39 1 55 146 45 137 2.63e-24 93.6
Msa0397420 AT2G16930.1 65.278 72 25 0 55 126 45 116 4.26e-24 93.2
Msa0397420 AT2G16930.3 65.278 72 25 0 55 126 45 116 4.26e-24 93.2
Msa0397420 AT2G16930.4 65.278 72 25 0 55 126 45 116 4.26e-24 93.2
Msa0397420 AT2G16930.2 65.278 72 25 0 55 126 45 116 4.26e-24 93.2

Find 95 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCTCGGTGTTAAAGTTTA+TGG 0.177876 3_2:-16790369 Msa0397420:CDS
CCATTCCCTTTCAATTTGTT+TGG 0.195824 3_2:-16787918 Msa0397420:three_prime_UTR
TGGCTATACTCTCCAGTAAT+TGG 0.234618 3_2:+16787938 None:intergenic
TACTCTCCAGTAATTGGTTT+GGG 0.261873 3_2:+16787944 None:intergenic
TCCATCAATTAGGGAGAAAA+TGG 0.286561 3_2:+16788428 None:intergenic
GGCCGAGTCACGGCCATTCT+TGG 0.302166 3_2:+16790398 None:intergenic
GTTGTAAAATTTGAGAAATA+TGG 0.308551 3_2:-16788405 Msa0397420:CDS
AAGTGAAGAGGAGGTGGATA+AGG 0.316338 3_2:+16790676 None:intergenic
CATTCCCTTTCAATTTGTTT+GGG 0.324178 3_2:-16787917 Msa0397420:three_prime_UTR
ATTGTCCCCAAACCAATTAC+TGG 0.330213 3_2:-16787950 Msa0397420:three_prime_UTR
TAAGGAAGATAGAGTACTTC+AGG 0.334007 3_2:-16788224 Msa0397420:CDS
ACCCCGATAGCTATAGATTA+AGG 0.337827 3_2:-16788242 Msa0397420:CDS
AGTGGTGGAACCAGATAAAA+AGG 0.346146 3_2:+16790509 None:intergenic
TAATTGGTTTGGGGACAATA+AGG 0.350944 3_2:+16787954 None:intergenic
CTCCCTTCTTGTGAGCATTC+CGG 0.351889 3_2:+16790430 None:intergenic
TAAATGCAAGGCATATATTA+TGG 0.355410 3_2:-16787685 Msa0397420:three_prime_UTR
ATATGGACCTGACAAGAAAA+AGG 0.362247 3_2:-16788388 Msa0397420:intron
AGTGAAGAGGAGGTGGATAA+GGG 0.369945 3_2:+16790677 None:intergenic
TATCTCTCCCTCGAATTAAT+AGG 0.379228 3_2:-16790467 Msa0397420:CDS
GATGAGACGTGAACGCAAAA+AGG 0.391120 3_2:-16788202 Msa0397420:CDS
GGGACAATAAGGAAAAGTTT+TGG 0.397829 3_2:+16787965 None:intergenic
TAGCTATCGGGGTTCGGAAC+TGG 0.398737 3_2:+16788252 None:intergenic
TTCCTTAATCTATAGCTATC+GGG 0.403484 3_2:+16788240 None:intergenic
GAGGTGGATAAGGGGAAAAG+TGG 0.403796 3_2:+16790686 None:intergenic
ATACTCTCCAGTAATTGGTT+TGG 0.406800 3_2:+16787943 None:intergenic
TTCTATTTGAGTAAATGAAA+TGG 0.412055 3_2:-16787885 Msa0397420:three_prime_UTR
TTCCACCATGGCTGTATGCA+TGG 0.414968 3_2:-16790598 Msa0397420:exon
GAAGTATAGAATCAACAATC+TGG 0.424433 3_2:+16788108 None:intergenic
ATGAGGGAGAAGAGAGTGAA+AGG 0.424623 3_2:+16790547 None:intergenic
GCAGGAAAGAATGTAGGAAT+TGG 0.430684 3_2:-16788462 Msa0397420:CDS
ATAGGTCTGCACTGATTATC+CGG 0.445380 3_2:-16790449 Msa0397420:CDS
CTTCCTTAATCTATAGCTAT+CGG 0.452680 3_2:+16788239 None:intergenic
AATCTATAGCTATCGGGGTT+CGG 0.454206 3_2:+16788246 None:intergenic
TTTAACACCGAGACGCCTTC+CGG 0.456051 3_2:+16790377 None:intergenic
TCCACCATGGCTGTATGCAT+GGG 0.465483 3_2:-16790597 Msa0397420:exon
ATATTATGGTAGTACACAAT+TGG 0.465780 3_2:-16787671 Msa0397420:three_prime_UTR
GACTCGGCCGGAAGGCGTCT+CGG 0.478013 3_2:-16790384 Msa0397420:CDS
TGAGGGAGAAGAGAGTGAAA+GGG 0.479607 3_2:+16790548 None:intergenic
TTCGGAACTGGTTCTTCTCG+TGG 0.494529 3_2:+16788264 None:intergenic
GGAAGATGAAGATGAAGATG+AGG 0.496509 3_2:+16790530 None:intergenic
GGTGACCAGGTCGCTAAGCC+TGG 0.500156 3_2:-16790348 Msa0397420:CDS
TCCACGCTGACGAACAATGA+TGG 0.507312 3_2:+16790323 None:intergenic
GACGCCTTCCGGCCGAGTCA+CGG 0.508209 3_2:+16790388 None:intergenic
TGAATGAAGTGAAGAGGAGG+TGG 0.510700 3_2:+16790670 None:intergenic
AGGTGGATAAGGGGAAAAGT+GGG 0.521172 3_2:+16790687 None:intergenic
TACCAAGAATGGCCGTGACT+CGG 0.523716 3_2:-16790400 Msa0397420:CDS
CTCTATTGCGGCATCATCAA+CGG 0.525471 3_2:+16788134 None:intergenic
AAAGAATGTAGGAATTGGTA+AGG 0.526308 3_2:-16788457 Msa0397420:CDS
CAACACTTGAAGTTTCATGC+AGG 0.532455 3_2:-16788480 Msa0397420:intron
CACACCCAAACAAATTGAAA+GGG 0.536832 3_2:+16787913 None:intergenic
GTGAAGAGGAGGTGGATAAG+GGG 0.537971 3_2:+16790678 None:intergenic
GAGGCCAAGTTTGAAAACTT+AGG 0.538642 3_2:+16787788 None:intergenic
CAGCCATGGTGGAAACTGTT+GGG 0.544181 3_2:+16790607 None:intergenic
ACACACCCAAACAAATTGAA+AGG 0.544224 3_2:+16787912 None:intergenic
TCGGAACTGGTTCTTCTCGT+GGG 0.545521 3_2:+16788265 None:intergenic
AATGCTCACAAGAAGGGAGC+AGG 0.545655 3_2:-16790426 Msa0397420:CDS
TCAACTTAGATCGGTTGTAA+AGG 0.545945 3_2:+16787823 None:intergenic
TGGAACCAGGCTTAGCGACC+TGG 0.546580 3_2:+16790343 None:intergenic
GAAGATGAAGATGAAGATGA+GGG 0.547400 3_2:+16790531 None:intergenic
AAGAATGGCCGTGACTCGGC+CGG 0.548270 3_2:-16790396 Msa0397420:CDS
CCAAACAAATTGAAAGGGAA+TGG 0.553721 3_2:+16787918 None:intergenic
TCCATCATTGTTCGTCAGCG+TGG 0.555721 3_2:-16790324 Msa0397420:CDS
TATCCGGAATGCTCACAAGA+AGG 0.555772 3_2:-16790433 Msa0397420:CDS
TTTCATGCAGGAAAGAATGT+AGG 0.556096 3_2:-16788468 Msa0397420:CDS
ACAGCCATGGTGGAAACTGT+TGG 0.556995 3_2:+16790606 None:intergenic
AGAAGCAAAACGACTGAAGA+CGG 0.559972 3_2:+16788060 None:intergenic
AAGGGATGAATGAAGTGAAG+AGG 0.561062 3_2:+16790664 None:intergenic
GGAGCAGGAAGTACCAAGAA+TGG 0.561066 3_2:-16790411 Msa0397420:CDS
AACTAAGCATCAACTTAGAT+CGG 0.563138 3_2:+16787814 None:intergenic
AGAGATAAGAGACTCAAGGA+AGG 0.570018 3_2:+16790645 None:intergenic
GTGCAGACCTATTAATTCGA+GGG 0.572508 3_2:+16790460 None:intergenic
ATCCGGAATGCTCACAAGAA+GGG 0.582060 3_2:-16790432 Msa0397420:CDS
TCCTTAATCTATAGCTATCG+GGG 0.582549 3_2:+16788241 None:intergenic
TGTTAAAGTTTATGGTGACC+AGG 0.587699 3_2:-16790361 Msa0397420:CDS
AGTGAGAGATAAGAGACTCA+AGG 0.590513 3_2:+16790641 None:intergenic
GGATGAATGAAGTGAAGAGG+AGG 0.591185 3_2:+16790667 None:intergenic
AGTGCAGACCTATTAATTCG+AGG 0.594766 3_2:+16790459 None:intergenic
GAGATAAGAGACTCAAGGAA+GGG 0.598360 3_2:+16790646 None:intergenic
ATGGCCGTGACTCGGCCGGA+AGG 0.604039 3_2:-16790392 Msa0397420:CDS
TGTTCGTCAGCGTGGAACCA+AGG 0.607342 3_2:-16790316 Msa0397420:intron
CAGAGAAATTGAACCATACA+CGG 0.614937 3_2:-16787988 Msa0397420:three_prime_UTR
ACTCTCCAGTAATTGGTTTG+GGG 0.621618 3_2:+16787945 None:intergenic
TGACGAACAATGATGGAACC+AGG 0.627337 3_2:+16790330 None:intergenic
CATACAAAACTATAAATGCA+AGG 0.631106 3_2:-16787697 Msa0397420:three_prime_UTR
CAATTAGGGAGAAAATGGTA+TGG 0.636675 3_2:+16788433 None:intergenic
ATTCGAGGGAGAGATACTGA+TGG 0.639368 3_2:+16790474 None:intergenic
ACAATCTGGATTCTCTATTG+CGG 0.641419 3_2:+16788122 None:intergenic
ACAATCTTCAGGATAACACT+AGG 0.647628 3_2:+16787749 None:intergenic
TGATGGAGTCATACGAAGAG+TGG 0.649417 3_2:+16790491 None:intergenic
ACCCATGCATACAGCCATGG+TGG 0.650077 3_2:+16790596 None:intergenic
TGGAGTCATACGAAGAGTGG+TGG 0.657319 3_2:+16790494 None:intergenic
GAAACCCATGCATACAGCCA+TGG 0.673634 3_2:+16790593 None:intergenic
CAACCCAACAGTTTCCACCA+TGG 0.696365 3_2:-16790610 Msa0397420:exon
ACGGAAGCGAGCATTAGCTG+TGG 0.714472 3_2:+16788153 None:intergenic
AGGACATGTCACATAGACAG+AGG 0.721372 3_2:+16787769 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATGAATTTTGAAATTA+TGG - chr3_2:16788157-16788176 Msa0397420:CDS 10.0%
!! GAAAAAAGAAGAAAAAAAAT+AGG - chr3_2:16788220-16788239 Msa0397420:CDS 15.0%
!!! ACATAATTTATGTTTTCTAT+AGG + chr3_2:16788268-16788287 None:intergenic 15.0%
!! TTCATTATTATTTAGACATT+TGG + chr3_2:16788564-16788583 None:intergenic 15.0%
!! CTTGATATTATAGAAAATTA+CGG - chr3_2:16789605-16789624 Msa0397420:intron 15.0%
!!! TTTTAGTAAGAAAAGAATTG+TGG - chr3_2:16788104-16788123 Msa0397420:exon 20.0%
!! CAAAATTCATATAACAATTC+AGG + chr3_2:16788151-16788170 None:intergenic 20.0%
!! TAGAAAACATAAATTATGTC+TGG - chr3_2:16788269-16788288 Msa0397420:CDS 20.0%
!! TTGCAGTAATGATAAAATTT+AGG + chr3_2:16788645-16788664 None:intergenic 20.0%
!! AAGATTTGATTGTTATGATT+TGG - chr3_2:16789166-16789185 Msa0397420:intron 20.0%
!! AAATCCGTAAACTTAAAAAA+GGG + chr3_2:16789228-16789247 None:intergenic 20.0%
!!! AGATTCTTTTGATATTTCTT+TGG - chr3_2:16789322-16789341 Msa0397420:intron 20.0%
!!! AAGAAGTTCTTTAAAAGTTA+TGG + chr3_2:16789496-16789515 None:intergenic 20.0%
!!! CGTAATTTTCTATAATATCA+AGG + chr3_2:16789607-16789626 None:intergenic 20.0%
!!! CTTATCATGATTTTAAATTG+CGG + chr3_2:16789731-16789750 None:intergenic 20.0%
!!! GCAATTTAAAATCATGATAA+GGG - chr3_2:16789730-16789749 Msa0397420:intron 20.0%
!! TTCAACAATATCTTAAAAAC+TGG + chr3_2:16789800-16789819 None:intergenic 20.0%
!! GAAAAATAATCAGAACTAAA+AGG + chr3_2:16789842-16789861 None:intergenic 20.0%
!! GTTGTAAAATTTGAGAAATA+TGG - chr3_2:16789941-16789960 Msa0397420:intron 20.0%
!! TTCTATTTGAGTAAATGAAA+TGG - chr3_2:16790461-16790480 Msa0397420:CDS 20.0%
!!! ATTTAAAAAGTACAATCTTC+AGG + chr3_2:16790611-16790630 None:intergenic 20.0%
! GTTCTTAATGACAATTAACA+TGG + chr3_2:16788183-16788202 None:intergenic 25.0%
! TGTCATTAAGAACTATACTT+TGG - chr3_2:16788190-16788209 Msa0397420:CDS 25.0%
! AAAACATAAATTATGTCTGG+AGG - chr3_2:16788272-16788291 Msa0397420:CDS 25.0%
!!! ATGATTAGTCTAGTAATTGT+TGG - chr3_2:16788586-16788605 Msa0397420:intron 25.0%
!! ATTTTATCATTACTGCAAAC+AGG - chr3_2:16788647-16788666 Msa0397420:intron 25.0%
!! TTTTATCATTACTGCAAACA+GGG - chr3_2:16788648-16788667 Msa0397420:intron 25.0%
! TATAAAGTAATGATACGAAG+AGG + chr3_2:16788771-16788790 None:intergenic 25.0%
!!! TTTCCCCTTTTTTAAGTTTA+CGG - chr3_2:16789221-16789240 Msa0397420:intron 25.0%
! AATCCGTAAACTTAAAAAAG+GGG + chr3_2:16789227-16789246 None:intergenic 25.0%
! CAAATCCGTAAACTTAAAAA+AGG + chr3_2:16789229-16789248 None:intergenic 25.0%
!! CGCAATTTAAAATCATGATA+AGG - chr3_2:16789729-16789748 Msa0397420:intron 25.0%
!! TTTTACAACTCCATCAATTA+GGG + chr3_2:16789930-16789949 None:intergenic 25.0%
!! ATTTTACAACTCCATCAATT+AGG + chr3_2:16789931-16789950 None:intergenic 25.0%
!! TTTATTACCTTTTTCTTGTC+AGG + chr3_2:16789968-16789987 None:intergenic 25.0%
!!! GTAATATTGTCTTCGTTTTT+TGG - chr3_2:16790334-16790353 Msa0397420:CDS 25.0%
!!! CTTGCATTTATAGTTTTGTA+TGG + chr3_2:16790651-16790670 None:intergenic 25.0%
! CATACAAAACTATAAATGCA+AGG - chr3_2:16790649-16790668 Msa0397420:five_prime_UTR 25.0%
! TAAATGCAAGGCATATATTA+TGG - chr3_2:16790661-16790680 Msa0397420:five_prime_UTR 25.0%
! ATATTATGGTAGTACACAAT+TGG - chr3_2:16790675-16790694 Msa0397420:five_prime_UTR 25.0%
! TCTTCATCTTCCTTTTTATC+TGG - chr3_2:16787827-16787846 Msa0397420:three_prime_UTR 30.0%
AAACAAAACAGAACAGAACT+AGG + chr3_2:16788521-16788540 None:intergenic 30.0%
! TTTGCTATGAAATCTACTGT+CGG - chr3_2:16789077-16789096 Msa0397420:intron 30.0%
ACTGTCGGTGAATAAAAATT+TGG - chr3_2:16789092-16789111 Msa0397420:intron 30.0%
ATAAAAATTTGGCACAACTG+AGG - chr3_2:16789103-16789122 Msa0397420:intron 30.0%
AAATCTTATCTCAGTACACA+GGG + chr3_2:16789153-16789172 None:intergenic 30.0%
! TGTTATGATTTGGCACAATT+TGG - chr3_2:16789176-16789195 Msa0397420:intron 30.0%
TTCTCTTTGTATGCATTTCT+AGG + chr3_2:16789367-16789386 None:intergenic 30.0%
! GGTGACTTTGATTTAAAACA+TGG + chr3_2:16789572-16789591 None:intergenic 30.0%
CAAATACAGACTCAATGTAA+AGG + chr3_2:16789692-16789711 None:intergenic 30.0%
TTACATTGAGTCTGTATTTG+TGG - chr3_2:16789692-16789711 Msa0397420:intron 30.0%
!! AATCATGATAAGGGTGTTAT+AGG - chr3_2:16789739-16789758 Msa0397420:intron 30.0%
AAAGAATGTAGGAATTGGTA+AGG - chr3_2:16789889-16789908 Msa0397420:intron 30.0%
!! AGCTAGTTAATTTGTACTCT+AGG + chr3_2:16790026-16790045 None:intergenic 30.0%
TTCCTTAATCTATAGCTATC+GGG + chr3_2:16790109-16790128 None:intergenic 30.0%
CTTCCTTAATCTATAGCTAT+CGG + chr3_2:16790110-16790129 None:intergenic 30.0%
GAAGTATAGAATCAACAATC+TGG + chr3_2:16790241-16790260 None:intergenic 30.0%
! CATTCCCTTTCAATTTGTTT+GGG - chr3_2:16790429-16790448 Msa0397420:CDS 30.0%
AACTAAGCATCAACTTAGAT+CGG + chr3_2:16790535-16790554 None:intergenic 30.0%
! TTCACCTAAGTTTTCAAACT+TGG - chr3_2:16790554-16790573 Msa0397420:CDS 30.0%
GAAGATGAAGATGAAGATGA+GGG + chr3_2:16787818-16787837 None:intergenic 35.0%
TATCTCTCCCTCGAATTAAT+AGG - chr3_2:16787879-16787898 Msa0397420:three_prime_UTR 35.0%
TGTTAAAGTTTATGGTGACC+AGG - chr3_2:16787985-16788004 Msa0397420:three_prime_UTR 35.0%
! GTTTTACACTGACATTCACA+CGG - chr3_2:16788718-16788737 Msa0397420:intron 35.0%
TTTATAAGAGTGACCTGATG+TGG - chr3_2:16788785-16788804 Msa0397420:intron 35.0%
! GAAAGTTAGTGTGTCATTCA+CGG - chr3_2:16788807-16788826 Msa0397420:intron 35.0%
CTTCAGAAAGAATGTAAGAG+TGG - chr3_2:16788910-16788929 Msa0397420:intron 35.0%
AATGTAAGAGTGGAGGTTTA+TGG - chr3_2:16788920-16788939 Msa0397420:intron 35.0%
CAATCGAAAACTCATACAGA+AGG + chr3_2:16788956-16788975 None:intergenic 35.0%
CTATATCTACCTATTCAGAG+GGG + chr3_2:16789053-16789072 None:intergenic 35.0%
GCTATATCTACCTATTCAGA+GGG + chr3_2:16789054-16789073 None:intergenic 35.0%
CAGTAGATTTCATAGCAAAC+AGG + chr3_2:16789076-16789095 None:intergenic 35.0%
CAAATCTTATCTCAGTACAC+AGG + chr3_2:16789154-16789173 None:intergenic 35.0%
CAGAGTAATAAATGCTACTG+TGG - chr3_2:16789533-16789552 Msa0397420:intron 35.0%
TAAATCAAAGTCACCGTTAG+TGG - chr3_2:16789577-16789596 Msa0397420:intron 35.0%
ATATCAAGGATCACCACTAA+CGG + chr3_2:16789593-16789612 None:intergenic 35.0%
ATTGAGTCTGTATTTGTGGT+TGG - chr3_2:16789696-16789715 Msa0397420:intron 35.0%
TTGAGTCTGTATTTGTGGTT+GGG - chr3_2:16789697-16789716 Msa0397420:intron 35.0%
CAGAACTAAAAGGAACAGTA+AGG + chr3_2:16789832-16789851 None:intergenic 35.0%
TTTCATGCAGGAAAGAATGT+AGG - chr3_2:16789878-16789897 Msa0397420:intron 35.0%
CAATTAGGGAGAAAATGGTA+TGG + chr3_2:16789916-16789935 None:intergenic 35.0%
! ACCATTTTCTCCCTAATTGA+TGG - chr3_2:16789917-16789936 Msa0397420:intron 35.0%
TCCATCAATTAGGGAGAAAA+TGG + chr3_2:16789921-16789940 None:intergenic 35.0%
ATATGGACCTGACAAGAAAA+AGG - chr3_2:16789958-16789977 Msa0397420:intron 35.0%
!! AATTTGTACTCTAGGATTGC+AGG + chr3_2:16790018-16790037 None:intergenic 35.0%
TCCTTAATCTATAGCTATCG+GGG + chr3_2:16790108-16790127 None:intergenic 35.0%
! TAAGGAAGATAGAGTACTTC+AGG - chr3_2:16790122-16790141 Msa0397420:intron 35.0%
ACAATCTGGATTCTCTATTG+CGG + chr3_2:16790227-16790246 None:intergenic 35.0%
CAGAGAAATTGAACCATACA+CGG - chr3_2:16790358-16790377 Msa0397420:CDS 35.0%
! GGGACAATAAGGAAAAGTTT+TGG + chr3_2:16790384-16790403 None:intergenic 35.0%
!! TAATTGGTTTGGGGACAATA+AGG + chr3_2:16790395-16790414 None:intergenic 35.0%
! TACTCTCCAGTAATTGGTTT+GGG + chr3_2:16790405-16790424 None:intergenic 35.0%
ATACTCTCCAGTAATTGGTT+TGG + chr3_2:16790406-16790425 None:intergenic 35.0%
CCAAACAAATTGAAAGGGAA+TGG + chr3_2:16790431-16790450 None:intergenic 35.0%
! CCATTCCCTTTCAATTTGTT+TGG - chr3_2:16790428-16790447 Msa0397420:CDS 35.0%
CACACCCAAACAAATTGAAA+GGG + chr3_2:16790436-16790455 None:intergenic 35.0%
ACACACCCAAACAAATTGAA+AGG + chr3_2:16790437-16790456 None:intergenic 35.0%
TCAACTTAGATCGGTTGTAA+AGG + chr3_2:16790526-16790545 None:intergenic 35.0%
ACAATCTTCAGGATAACACT+AGG + chr3_2:16790600-16790619 None:intergenic 35.0%
AAGGGATGAATGAAGTGAAG+AGG + chr3_2:16787685-16787704 None:intergenic 40.0%
GAGATAAGAGACTCAAGGAA+GGG + chr3_2:16787703-16787722 None:intergenic 40.0%
AGAGATAAGAGACTCAAGGA+AGG + chr3_2:16787704-16787723 None:intergenic 40.0%
AGTGAGAGATAAGAGACTCA+AGG + chr3_2:16787708-16787727 None:intergenic 40.0%
GGAAGATGAAGATGAAGATG+AGG + chr3_2:16787819-16787838 None:intergenic 40.0%
! AGTGGTGGAACCAGATAAAA+AGG + chr3_2:16787840-16787859 None:intergenic 40.0%
GTGCAGACCTATTAATTCGA+GGG + chr3_2:16787889-16787908 None:intergenic 40.0%
AGTGCAGACCTATTAATTCG+AGG + chr3_2:16787890-16787909 None:intergenic 40.0%
!! ATAGGTCTGCACTGATTATC+CGG - chr3_2:16787897-16787916 Msa0397420:three_prime_UTR 40.0%
!! CGTCTCGGTGTTAAAGTTTA+TGG - chr3_2:16787977-16787996 Msa0397420:three_prime_UTR 40.0%
AGAGAATGAAAGACACACCT+TGG + chr3_2:16788050-16788069 None:intergenic 40.0%
!! TCAGCATTGACAGTTGAGTT+TGG + chr3_2:16788298-16788317 None:intergenic 40.0%
! CTAGACCGAACACTTTTACT+CGG - chr3_2:16788323-16788342 Msa0397420:intron 40.0%
!! TCGAACCGAGTAAAAGTGTT+CGG + chr3_2:16788331-16788350 None:intergenic 40.0%
!! CTTTTACTCGGTTCGAAAAC+AGG - chr3_2:16788335-16788354 Msa0397420:intron 40.0%
TGACCTTATAAAGTGCGCTT+TGG - chr3_2:16788677-16788696 Msa0397420:intron 40.0%
GACCTTATAAAGTGCGCTTT+GGG - chr3_2:16788678-16788697 Msa0397420:intron 40.0%
ACACACTAACTTTCCACATC+AGG + chr3_2:16788801-16788820 None:intergenic 40.0%
CAGAAAGAATGTAAGAGTGG+AGG - chr3_2:16788913-16788932 Msa0397420:intron 40.0%
TGGAGGTTTATGGTTTGATG+TGG - chr3_2:16788930-16788949 Msa0397420:intron 40.0%
GGCTATATCTACCTATTCAG+AGG + chr3_2:16789055-16789074 None:intergenic 40.0%
AGTACACAGGGTTAACTACA+TGG + chr3_2:16789141-16789160 None:intergenic 40.0%
ATGCTACTGTGGAAGTAATG+AGG - chr3_2:16789544-16789563 Msa0397420:intron 40.0%
TGCTACTGTGGAAGTAATGA+GGG - chr3_2:16789545-16789564 Msa0397420:intron 40.0%
!! ATTTGCTTTTGCGATGCCAT+TGG - chr3_2:16789652-16789671 Msa0397420:intron 40.0%
TGAGTCTGTATTTGTGGTTG+GGG - chr3_2:16789698-16789717 Msa0397420:intron 40.0%
CAACACTTGAAGTTTCATGC+AGG - chr3_2:16789866-16789885 Msa0397420:intron 40.0%
GCAGGAAAGAATGTAGGAAT+TGG - chr3_2:16789884-16789903 Msa0397420:intron 40.0%
AATCTATAGCTATCGGGGTT+CGG + chr3_2:16790103-16790122 None:intergenic 40.0%
ACCCCGATAGCTATAGATTA+AGG - chr3_2:16790104-16790123 Msa0397420:intron 40.0%
AGAAGCAAAACGACTGAAGA+CGG + chr3_2:16790289-16790308 None:intergenic 40.0%
ATTGTCCCCAAACCAATTAC+TGG - chr3_2:16790396-16790415 Msa0397420:CDS 40.0%
!! ACTCTCCAGTAATTGGTTTG+GGG + chr3_2:16790404-16790423 None:intergenic 40.0%
TGGCTATACTCTCCAGTAAT+TGG + chr3_2:16790411-16790430 None:intergenic 40.0%
GAGGCCAAGTTTGAAAACTT+AGG + chr3_2:16790561-16790580 None:intergenic 40.0%
AGGTGGATAAGGGGAAAAGT+GGG + chr3_2:16787662-16787681 None:intergenic 45.0%
AGTGAAGAGGAGGTGGATAA+GGG + chr3_2:16787672-16787691 None:intergenic 45.0%
AAGTGAAGAGGAGGTGGATA+AGG + chr3_2:16787673-16787692 None:intergenic 45.0%
TGAATGAAGTGAAGAGGAGG+TGG + chr3_2:16787679-16787698 None:intergenic 45.0%
GGATGAATGAAGTGAAGAGG+AGG + chr3_2:16787682-16787701 None:intergenic 45.0%
TGAGGGAGAAGAGAGTGAAA+GGG + chr3_2:16787801-16787820 None:intergenic 45.0%
ATGAGGGAGAAGAGAGTGAA+AGG + chr3_2:16787802-16787821 None:intergenic 45.0%
TGATGGAGTCATACGAAGAG+TGG + chr3_2:16787858-16787877 None:intergenic 45.0%
ATTCGAGGGAGAGATACTGA+TGG + chr3_2:16787875-16787894 None:intergenic 45.0%
TATCCGGAATGCTCACAAGA+AGG - chr3_2:16787913-16787932 Msa0397420:three_prime_UTR 45.0%
ATCCGGAATGCTCACAAGAA+GGG - chr3_2:16787914-16787933 Msa0397420:three_prime_UTR 45.0%
! TGACGAACAATGATGGAACC+AGG + chr3_2:16788019-16788038 None:intergenic 45.0%
! CAGTTGTGTGCGTGAGTTTT+AGG - chr3_2:16788366-16788385 Msa0397420:intron 45.0%
!!! TTGTGTGCGTGAGTTTTAGG+TGG - chr3_2:16788369-16788388 Msa0397420:intron 45.0%
ACAGAACAGAACTAGGCACT+TGG + chr3_2:16788514-16788533 None:intergenic 45.0%
! CTTATAAAGTGCGCTTTGGG+CGG - chr3_2:16788681-16788700 Msa0397420:intron 45.0%
TCACAGTTTGTGCAATCTCG+CGG - chr3_2:16788980-16788999 Msa0397420:intron 45.0%
! TTGTGCAATCTCGCGGATTA+AGG - chr3_2:16788987-16789006 Msa0397420:intron 45.0%
! TGTGCAATCTCGCGGATTAA+GGG - chr3_2:16788988-16789007 Msa0397420:intron 45.0%
GGTTCTTGAACTCTCACCAA+TGG + chr3_2:16789671-16789690 None:intergenic 45.0%
TCTGTATTTGTGGTTGGGGT+TGG - chr3_2:16789702-16789721 Msa0397420:intron 45.0%
CTGTATTTGTGGTTGGGGTT+GGG - chr3_2:16789703-16789722 Msa0397420:intron 45.0%
TGTATTTGTGGTTGGGGTTG+GGG - chr3_2:16789704-16789723 Msa0397420:intron 45.0%
GATGAGACGTGAACGCAAAA+AGG - chr3_2:16790144-16790163 Msa0397420:intron 45.0%
CTCTATTGCGGCATCATCAA+CGG + chr3_2:16790215-16790234 None:intergenic 45.0%
!! GGAAAAGTTTTGGCCGTGTA+TGG + chr3_2:16790374-16790393 None:intergenic 45.0%
AGGACATGTCACATAGACAG+AGG + chr3_2:16790580-16790599 None:intergenic 45.0%
GAGGTGGATAAGGGGAAAAG+TGG + chr3_2:16787663-16787682 None:intergenic 50.0%
GTGAAGAGGAGGTGGATAAG+GGG + chr3_2:16787671-16787690 None:intergenic 50.0%
CAACCCAACAGTTTCCACCA+TGG - chr3_2:16787736-16787755 Msa0397420:three_prime_UTR 50.0%
! CAGCCATGGTGGAAACTGTT+GGG + chr3_2:16787742-16787761 None:intergenic 50.0%
! ACAGCCATGGTGGAAACTGT+TGG + chr3_2:16787743-16787762 None:intergenic 50.0%
TTCCACCATGGCTGTATGCA+TGG - chr3_2:16787748-16787767 Msa0397420:three_prime_UTR 50.0%
TCCACCATGGCTGTATGCAT+GGG - chr3_2:16787749-16787768 Msa0397420:three_prime_UTR 50.0%
GAAACCCATGCATACAGCCA+TGG + chr3_2:16787756-16787775 None:intergenic 50.0%
TGGAGTCATACGAAGAGTGG+TGG + chr3_2:16787855-16787874 None:intergenic 50.0%
CTCCCTTCTTGTGAGCATTC+CGG + chr3_2:16787919-16787938 None:intergenic 50.0%
AATGCTCACAAGAAGGGAGC+AGG - chr3_2:16787920-16787939 Msa0397420:three_prime_UTR 50.0%
!! GGAGCAGGAAGTACCAAGAA+TGG - chr3_2:16787935-16787954 Msa0397420:three_prime_UTR 50.0%
TACCAAGAATGGCCGTGACT+CGG - chr3_2:16787946-16787965 Msa0397420:three_prime_UTR 50.0%
TTTAACACCGAGACGCCTTC+CGG + chr3_2:16787972-16787991 None:intergenic 50.0%
TCCATCATTGTTCGTCAGCG+TGG - chr3_2:16788022-16788041 Msa0397420:three_prime_UTR 50.0%
TCCACGCTGACGAACAATGA+TGG + chr3_2:16788026-16788045 None:intergenic 50.0%
CGCCCAAAGCGCACTTTATA+AGG + chr3_2:16788683-16788702 None:intergenic 50.0%
CGTGCATTTCCCCTCTGAAT+AGG - chr3_2:16789041-16789060 Msa0397420:intron 50.0%
GGCACAACTGAGGCACAATT+TGG - chr3_2:16789113-16789132 Msa0397420:intron 50.0%
GTATTTGTGGTTGGGGTTGG+GGG - chr3_2:16789705-16789724 Msa0397420:intron 50.0%
! TCGGAACTGGTTCTTCTCGT+GGG + chr3_2:16790084-16790103 None:intergenic 50.0%
! TTCGGAACTGGTTCTTCTCG+TGG + chr3_2:16790085-16790104 None:intergenic 50.0%
ACCCATGCATACAGCCATGG+TGG + chr3_2:16787753-16787772 None:intergenic 55.0%
TGTTCGTCAGCGTGGAACCA+AGG - chr3_2:16788030-16788049 Msa0397420:three_prime_UTR 55.0%
CTCACGCACACAACTGTGTG+AGG + chr3_2:16788362-16788381 None:intergenic 55.0%
TAGCTATCGGGGTTCGGAAC+TGG + chr3_2:16790097-16790116 None:intergenic 55.0%
ACGGAAGCGAGCATTAGCTG+TGG + chr3_2:16790196-16790215 None:intergenic 55.0%
! AAGAATGGCCGTGACTCGGC+CGG - chr3_2:16787950-16787969 Msa0397420:three_prime_UTR 60.0%
TGGAACCAGGCTTAGCGACC+TGG + chr3_2:16788006-16788025 None:intergenic 60.0%
GGCCGAGTCACGGCCATTCT+TGG + chr3_2:16787951-16787970 None:intergenic 65.0%
GGTGACCAGGTCGCTAAGCC+TGG - chr3_2:16787998-16788017 Msa0397420:three_prime_UTR 65.0%
! ATGGCCGTGACTCGGCCGGA+AGG - chr3_2:16787954-16787973 Msa0397420:three_prime_UTR 70.0%
GACGCCTTCCGGCCGAGTCA+CGG + chr3_2:16787961-16787980 None:intergenic 70.0%
!! GACTCGGCCGGAAGGCGTCT+CGG - chr3_2:16787962-16787981 Msa0397420:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 16787658 16790710 16787658 ID=Msa0397420;Name=Msa0397420
chr3_2 mRNA 16787658 16790710 16787658 ID=Msa0397420-mRNA-1;Parent=Msa0397420;Name=Msa0397420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=97|1|1|1|1|1|3|461|192
chr3_2 exon 16787658 16788298 16787658 ID=Msa0397420-mRNA-1:exon:3809;Parent=Msa0397420-mRNA-1
chr3_2 exon 16788389 16788490 16788389 ID=Msa0397420-mRNA-1:exon:3808;Parent=Msa0397420-mRNA-1
chr3_2 exon 16790317 16790710 16790317 ID=Msa0397420-mRNA-1:exon:3807;Parent=Msa0397420-mRNA-1
chr3_2 five_prime_UTR 16790614 16790710 16790614 ID=Msa0397420-mRNA-1:five_prime_utr;Parent=Msa0397420-mRNA-1
chr3_2 CDS 16790317 16790613 16790317 ID=Msa0397420-mRNA-1:cds;Parent=Msa0397420-mRNA-1
chr3_2 CDS 16788389 16788490 16788389 ID=Msa0397420-mRNA-1:cds;Parent=Msa0397420-mRNA-1
chr3_2 CDS 16788119 16788298 16788119 ID=Msa0397420-mRNA-1:cds;Parent=Msa0397420-mRNA-1
chr3_2 three_prime_UTR 16787658 16788118 16787658 ID=Msa0397420-mRNA-1:three_prime_utr;Parent=Msa0397420-mRNA-1
Gene Sequence

>Msa0397420

ATGGCTGTATGCATGGGTTTCAACATAGCAACAGCATTCAAATCCCTTTCACTCTCTTCTCCCTCATCTTCATCTTCATCTTCCTTTTTATCTGGTTCCACCACTCTTCGTATGACTCCATCAGTATCTCTCCCTCGAATTAATAGGTCTGCACTGATTATCCGGAATGCTCACAAGAAGGGAGCAGGAAGTACCAAGAATGGCCGTGACTCGGCCGGAAGGCGTCTCGGTGTTAAAGTTTATGGTGACCAGGTCGCTAAGCCTGGTTCCATCATTGTTCGTCAGCGTGGAACCAAGTTTCATGCAGGAAAGAATGTAGGAATTGGTAAGGACCATACCATTTTCTCCCTAATTGATGGAGTTGTAAAATTTGAGAAATATGGACCTGACAAGAAAAAGATCAGTGTTTACCCACGAGAAGAACCAGTTCCGAACCCCGATAGCTATAGATTAAGGAAGATAGAGTACTTCAGGATGAGACGTGAACGCAAAAAGGCTGCTCAAGAAAGAAGAGCTTTTCAACCACAGCTAATGCTCGCTTCCGTTGATGATGCCGCAATAGAGAATCCAGATTGTTGA

Protein sequence

>Msa0397420

MAVCMGFNIATAFKSLSLSSPSSSSSSSFLSGSTTLRMTPSVSLPRINRSALIIRNAHKKGAGSTKNGRDSAGRRLGVKVYGDQVAKPGSIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGVVKFEKYGPDKKKISVYPREEPVPNPDSYRLRKIEYFRMRRERKKAAQERRAFQPQLMLASVDDAAIENPDC*