AlfalfaGEDB | Msa0367380

M. sativa cultivar zhongmu-4 / Msa0367380

KEGG: K02879
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904
PFAM: PF01196.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367380	XP_013460500.1	94.393	214	9	1	1	211	1	214	6.35e-141	402

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367380	sp\|O80363\|RK17_TOBAC	76.847	203	40	4	16	211	3	205	4.76e-102	296

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367380	A0A072UXJ8	94.393	214	9	1	1	211	1	214	3.03e-141	402

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0367380	0.878862	1.992133e-69	-8.615850e-47
Msa0001540	Msa0367380	0.829904	3.964671e-55	-8.615850e-47
Msa0001550	Msa0367380	0.810542	1.094332e-50	-8.615850e-47
Msa0002110	Msa0367380	0.834005	3.848789e-56	-8.615850e-47
Msa0002690	Msa0367380	0.856509	3.066741e-62	-8.615850e-47
Msa0002700	Msa0367380	0.847996	8.118366e-60	-8.615850e-47
Msa0004180	Msa0367380	0.904483	1.170747e-79	-8.615850e-47
Msa0005190	Msa0367380	0.800653	1.302580e-48	-8.615850e-47
Msa0005910	Msa0367380	-0.810960	8.888990e-51	-8.615850e-47
Msa0007570	Msa0367380	0.819752	9.849553e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367380	MtrunA17_Chr3g0108681	94.393	214	9	1	1	211	1	214	5.84e-145	402
Msa0367380	MtrunA17_Chr3g0129901	44.144	111	62	0	101	211	3	113	6.95e-29	105
Msa0367380	MtrunA17_Chr8g0390801	44.144	111	62	0	101	211	3	113	1.09e-28	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367380	AT3G54210.1	70.616	211	52	5	7	211	5	211	1.41e-95	277
Msa0367380	AT5G09770.1	45.946	111	60	0	101	211	3	113	1.60e-29	107
Msa0367380	AT5G64650.1	45.045	111	61	0	101	211	3	113	5.92e-29	106

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Find 91 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATACAACTAAACAT+AGG	0.581541	3_1:+63045615	None:intergenic
AAAGAAAAGTGGATAGAGAT+AGG	0.370728	3_1:+63047399	None:intergenic
AACATACTTCCTAATTGCAC+TGG	0.550604	3_1:+63045945	None:intergenic
AACTGAGAATTGAGACACTC+TGG	0.557561	3_1:-63047366	Msa0367380:five_prime_UTR
AAGATGGTTCTCTACATAAA+AGG	0.312212	3_1:-63045900	Msa0367380:CDS
AAGGAAGAAGCGGAAGTAGG+AGG	0.601998	3_1:+63047216	None:intergenic
AATGAAGGTATACCTGATGG+AGG	0.679743	3_1:+63047090	None:intergenic
AATGGCGAACGTGGCTGTTA+TGG	0.345758	3_1:-63047316	Msa0367380:CDS
AATTGCACTGGCTCTTGCCC+TGG	0.404316	3_1:+63045957	None:intergenic
ACAACACAGCTCCTTAAATA+TGG	0.358835	3_1:-63045994	Msa0367380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAGTGGATAGAGAT+AGG	+	chr3_1:63045502-63045521	None:intergenic	30.0%
ATGCAATGGAAATGAAATGA+AGG	+	chr3_1:63045826-63045845	None:intergenic	30.0%
TTAAAGAGTCTCTTATGCAA+TGG	+	chr3_1:63045840-63045859	None:intergenic	30.0%
TTATAAACCAGAAATCCTAG+AGG	+	chr3_1:63046344-63046363	None:intergenic	30.0%
AAGTAAGGCATAGTGTTTAA+GGG	+	chr3_1:63046420-63046439	None:intergenic	30.0%
AACTTGAACCAAGTAAAATG+AGG	+	chr3_1:63046622-63046641	None:intergenic	30.0%
TGCTGAATTTCAAGAGATAA+TGG	+	chr3_1:63046726-63046745	None:intergenic	30.0%
AGTTTCACCATTATTGACAA+TGG	-	chr3_1:63046793-63046812	Msa0367380:intron	30.0%
AAGATGGTTCTCTACATAAA+AGG	-	chr3_1:63046998-63047017	Msa0367380:intron	30.0%
ATAATTGCATCACATAAAGG+CGG	+	chr3_1:63047196-63047215	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	63045431	63047489	63045431	ID=Msa0367380;Name=Msa0367380
chr3_1	mRNA	63045431	63047489	63045431	ID=Msa0367380-mRNA-1;Parent=Msa0367380;Name=Msa0367380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=152\|1\|1\|1\|1\|1\|2\|307\|211
chr3_1	exon	63045431	63046138	63045431	ID=Msa0367380-mRNA-1:exon:12359;Parent=Msa0367380-mRNA-1
chr3_1	exon	63047103	63047489	63047103	ID=Msa0367380-mRNA-1:exon:12358;Parent=Msa0367380-mRNA-1
chr3_1	five_prime_UTR	63047338	63047489	63047338	ID=Msa0367380-mRNA-1:five_prime_utr;Parent=Msa0367380-mRNA-1
chr3_1	CDS	63047103	63047337	63047103	ID=Msa0367380-mRNA-1:cds;Parent=Msa0367380-mRNA-1
chr3_1	CDS	63045738	63046138	63045738	ID=Msa0367380-mRNA-1:cds;Parent=Msa0367380-mRNA-1
chr3_1	three_prime_UTR	63045431	63045737	63045431	ID=Msa0367380-mRNA-1:three_prime_utr;Parent=Msa0367380-mRNA-1

Gene Sequence

>Msa0367380

ATGGCGAACGTGGCTGTTATGGCTACCACCACCAACAACCCCACCACCACCACCAGCAGATGGAACATGTCTTCTCTTCGCTCTGCCTTACCTTCAATTCCTCCTACTTCCGCTTCTTCCTTACGCTTCACTCGCTCTTCTCCAACAACACTCCGAATTTCCAGACCCAAATCCCAATCCCTACCTCCCTCTTTCACCGGACTTCGTCCTCTCCCAATCTTCGCTCCTCCATCAGAATTTGATCACAGTTTCACCATTATTGACAATGGTGGTCGAGTCTATGCTATGAGACATGGAAGGAAAGTGCCAAAACTCAACAGGCCCCCTGATCAGCGTAAGGCACTCATTCGAGGCCTAACAACACAGCTCCTTAAATATGGCCGCATCAAGACAACCAGGGCAAGAGCCAGTGCAATTAGGAAGTATGTTGATAAAATGATCACTCTTGCAAAAGATGGTTCTCTACATAAAAGGAGACAAGCCCTTGGCTTCATCTATGAGAAGCAGATTGTTCATGCTTTATTTGCAGAGGTTCCAGAACGTTACGGCGAAAGAAATGGTGGTTATACAAGAATTATAAGAACCCTACCAAGGCGGGGTGATAATGCACCTATGGCATACATTGAACTTGTGTAA

Protein sequence

>Msa0367380

MANVAVMATTTNNPTTTTSRWNMSSLRSALPSIPPTSASSLRFTRSSPTTLRISRPKSQSLPPSFTGLRPLPIFAPPSEFDHSFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV*