AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126320 MtrunA17_Chr7g0267151 100.000 197 0 0 3 199 69 265 6.22e-147 409
Msa1126320 MtrunA17_Chr1g0177361 95.939 197 8 0 3 199 71 267 4.21e-142 396
Msa1126320 MtrunA17_Chr4g0052651 31.111 180 114 3 8 182 6 180 7.48e-24 94.0
Msa1126320 MtrunA17_Chr4g0070091 32.051 156 94 4 9 163 77 221 6.50e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126320 AT5G06290.1 94.388 196 11 0 4 199 78 273 2.67e-138 387
Msa1126320 AT3G11630.1 93.367 196 13 0 4 199 71 266 4.64e-138 387
Msa1126320 AT5G06290.2 91.925 161 13 0 4 164 78 238 1.07e-107 309
Msa1126320 AT1G48130.1 30.114 176 118 2 8 182 6 177 4.19e-24 95.1
Msa1126320 AT3G26060.3 34.194 155 90 4 9 162 10 153 1.77e-17 76.3
Msa1126320 AT3G26060.1 33.758 157 88 5 9 162 72 215 1.74e-16 75.1
Msa1126320 AT3G26060.2 33.758 157 88 5 9 162 73 216 1.85e-16 74.7

Find 67 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGTGTACACCTTGATTT+TGG 0.190910 7_3:-77859755 Msa1126320:three_prime_UTR
TTGCGCATCATAACTTAAAA+TGG 0.199343 7_3:+77859798 None:intergenic
AATAATACTTTCATTTATAA+TGG 0.234593 7_3:-77859670 Msa1126320:three_prime_UTR
GTTAAACTATCTGAATATAT+TGG 0.248804 7_3:-77862765 Msa1126320:CDS
AGTACTCTTTGCTAAGTTTA+GGG 0.275142 7_3:+77859921 None:intergenic
AAGTACTCTTTGCTAAGTTT+AGG 0.277836 7_3:+77859920 None:intergenic
GGAACTTAATACAGAGATAT+TGG 0.285595 7_3:-77862565 Msa1126320:CDS
GTATCGATTGGGGATGTAAA+AGG 0.296126 7_3:-77859843 Msa1126320:three_prime_UTR
AAGTTTAGGGTCTGGTTTCA+TGG 0.308012 7_3:+77859934 None:intergenic
CCCGATGAAGTTTGCCCTGC+TGG 0.308593 7_3:-77859977 Msa1126320:CDS
TGCCCTGCTGGGTGGAAGCC+TGG 0.371090 7_3:-77859965 Msa1126320:CDS
AAATCCATATCAAAATCTTA+TGG 0.385045 7_3:-77860560 Msa1126320:CDS
TTCACATTTGTTTGCCCCAC+AGG 0.386111 7_3:-77862705 Msa1126320:intron
TTAAACTATCTGAATATATT+GGG 0.386115 7_3:-77862764 Msa1126320:CDS
CCAGCAGGGCAAACTTCATC+GGG 0.387505 7_3:+77859977 None:intergenic
ACAGCCTCAGCTTCAAAATC+TGG 0.388070 7_3:+77862884 None:intergenic
TGTAGTTCTCGCACCTTGCA+TGG 0.388525 7_3:-77860649 Msa1126320:intron
GTGTCAAAATTTACCTGATC+AGG 0.391100 7_3:+77860527 None:intergenic
TGGTGTTCTCATTCCTGATC+AGG 0.396767 7_3:-77860540 Msa1126320:intron
ACCATCAACAACCTCGGAAT+TGG 0.399693 7_3:-77860202 Msa1126320:CDS
ACAGATAAGAACAGAAGAAA+TGG 0.403614 7_3:+77859711 None:intergenic
GGTTTCATGGACTTCTCACC+AGG 0.417997 7_3:+77859947 None:intergenic
TCACCAGGCTTCCACCCAGC+AGG 0.418832 7_3:+77859962 None:intergenic
TCTTTGCTAAGTTTAGGGTC+TGG 0.422181 7_3:+77859926 None:intergenic
ACTGCTCATCTGTATCGATT+GGG 0.429908 7_3:-77859854 Msa1126320:three_prime_UTR
ACCAATTCCGAGGTTGTTGA+TGG 0.432822 7_3:+77860201 None:intergenic
GACAGAAAGTCCGGTGGTCT+CGG 0.433149 7_3:-77860617 Msa1126320:CDS
AACTGCTCATCTGTATCGAT+TGG 0.445433 7_3:-77859855 Msa1126320:three_prime_UTR
GAACTTAATACAGAGATATT+GGG 0.451651 7_3:-77862564 Msa1126320:CDS
GGCGCAGCGTTCCCAACTAA+TGG 0.459593 7_3:+77862905 None:intergenic
AAGAGCGAACTACCATTAGT+TGG 0.460962 7_3:-77862917 Msa1126320:CDS
CCCAGCAGGGCAAACTTCAT+CGG 0.471666 7_3:+77859976 None:intergenic
TGACCGCCATGCAGAATTTG+CGG 0.486264 7_3:-77862586 Msa1126320:CDS
GTGTTGTTATTAAAGCATAT+CGG 0.494699 7_3:-77859773 Msa1126320:three_prime_UTR
TGTTCATTATTGACAAGGAA+GGG 0.497591 7_3:-77860240 Msa1126320:CDS
TTCTGTGATTTAAGTAAGCA+AGG 0.504638 7_3:-77859629 Msa1126320:three_prime_UTR
CTTACTTAAATCACAGAACA+AGG 0.511073 7_3:+77859634 None:intergenic
GTAGTTCTCGCACCTTGCAT+GGG 0.512924 7_3:-77860648 Msa1126320:intron
CATAATTCACTCCAAAATCA+AGG 0.515253 7_3:+77859744 None:intergenic
AAACAAATGTGAAGTCCAAT+GGG 0.523515 7_3:+77862715 None:intergenic
TTGTTCATTATTGACAAGGA+AGG 0.531673 7_3:-77860241 Msa1126320:CDS
AGAGCGAACTACCATTAGTT+GGG 0.537134 7_3:-77862916 Msa1126320:CDS
CAAACAAATGTGAAGTCCAA+TGG 0.543653 7_3:+77862714 None:intergenic
CCGATGAAGTTTGCCCTGCT+GGG 0.550218 7_3:-77859976 Msa1126320:CDS
GCAGGCCTTGCAATACGTGC+AGG 0.551362 7_3:-77860005 Msa1126320:intron
GTTCTCCTGCACGTATTGCA+AGG 0.557103 7_3:+77860000 None:intergenic
GTTCATTATTGACAAGGAAG+GGG 0.557158 7_3:-77860239 Msa1126320:CDS
TGAGACAAAGAGAACACTCC+AGG 0.563249 7_3:-77860167 Msa1126320:intron
GTTCAAACAGACAGAAAGTC+CGG 0.564704 7_3:-77860626 Msa1126320:CDS
GGTTGTTGATGGTAGAATGT+TGG 0.565020 7_3:+77860212 None:intergenic
CACCAGGCTTCCACCCAGCA+GGG 0.584088 7_3:+77859963 None:intergenic
TGTCTGTTTGAACCCATGCA+AGG 0.591033 7_3:+77860636 None:intergenic
CTGCTCATCTGTATCGATTG+GGG 0.599468 7_3:-77859853 Msa1126320:three_prime_UTR
ATTTAGGGGATAGCATTGAG+AGG 0.608578 7_3:-77860265 Msa1126320:intron
GTTCAAGTCACCGAGACCAC+CGG 0.609395 7_3:+77860607 None:intergenic
CAACACTTCTACCAATTCCG+AGG 0.625459 7_3:+77860191 None:intergenic
TAAGTTCCGCAAATTCTGCA+TGG 0.626665 7_3:+77862580 None:intergenic
AGGATTGTTCATTATTGACA+AGG 0.639152 7_3:-77860245 Msa1126320:CDS
CATTCTACCATCAACAACCT+CGG 0.642105 7_3:-77860208 Msa1126320:CDS
GGGTGTTTCAGTTGACAGTG+TGG 0.646005 7_3:-77862544 Msa1126320:intron
TTGGTGACATCAGATACTAA+AGG 0.646692 7_3:+77860581 None:intergenic
ATGAAGTTTGCCCTGCTGGG+TGG 0.658136 7_3:-77859973 Msa1126320:CDS
TTACTTAAATCACAGAACAA+GGG 0.660306 7_3:+77859635 None:intergenic
GTTCCGCAAATTCTGCATGG+CGG 0.722852 7_3:+77862583 None:intergenic
AAAGGGTCGACCAACCTGTG+GGG 0.742883 7_3:+77862691 None:intergenic
CAAACAGACAGAAAGTCCGG+TGG 0.767889 7_3:-77860623 Msa1126320:CDS
CAGCAGGGCAAACTTCATCG+GGG 0.776185 7_3:+77859978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATATACTAATCT+AGG - chr7_3:77860613-77860632 Msa1126320:CDS 10.0%
!! TAAAGAAAATGTAAATAAAA+GGG + chr7_3:77860721-77860740 None:intergenic 10.0%
!! TATATATATATATATGAGTT+AGG + chr7_3:77861715-77861734 None:intergenic 10.0%
!!! TTTAATTTCAATATATTATC+TGG - chr7_3:77862330-77862349 Msa1126320:intron 10.0%
!! AATAATACTTTCATTTATAA+TGG - chr7_3:77863106-77863125 Msa1126320:intron 10.0%
!! TTGAATAATTAAAAACAAGA+TGG - chr7_3:77859639-77859658 Msa1126320:three_prime_UTR 15.0%
!! TTAAACTATCTGAATATATT+GGG - chr7_3:77860012-77860031 Msa1126320:intron 15.0%
!! AGGACTAATTATTAAAATTA+AGG + chr7_3:77860268-77860287 None:intergenic 15.0%
!! TCAATAAATTATAAATGTCT+GGG + chr7_3:77860322-77860341 None:intergenic 15.0%
!! ATCAATAAATTATAAATGTC+TGG + chr7_3:77860323-77860342 None:intergenic 15.0%
!! CTAAAGAAAATGTAAATAAA+AGG + chr7_3:77860722-77860741 None:intergenic 15.0%
!!! TTATTTATAAATTAGTTTGC+TGG + chr7_3:77860815-77860834 None:intergenic 15.0%
!! AATATGTATTATTATTGACA+TGG - chr7_3:77861269-77861288 Msa1126320:intron 15.0%
!! ATATGTATTATTATTGACAT+GGG - chr7_3:77861270-77861289 Msa1126320:intron 15.0%
!! TTAAATCTAATTAAGAAACA+TGG - chr7_3:77861321-77861340 Msa1126320:intron 15.0%
!! TAAATCTAATTAAGAAACAT+GGG - chr7_3:77861322-77861341 Msa1126320:intron 15.0%
!! ATTTATTCATTTCATTGTTA+AGG + chr7_3:77861614-77861633 None:intergenic 15.0%
!!! TTTTTTATTCCACTTTTTTT+CGG - chr7_3:77862457-77862476 Msa1126320:intron 15.0%
!! GTTAAACTATCTGAATATAT+TGG - chr7_3:77860011-77860030 Msa1126320:intron 20.0%
!! TACAACTATAGTTTACTAAA+GGG + chr7_3:77860105-77860124 None:intergenic 20.0%
!! ATATAAGAGTTAACAATAGA+AGG + chr7_3:77860288-77860307 None:intergenic 20.0%
!! CAATAAATTATAAATGTCTG+GGG + chr7_3:77860321-77860340 None:intergenic 20.0%
!! ATTTATTGATATGACATTGT+TGG - chr7_3:77860333-77860352 Msa1126320:intron 20.0%
!! GTATATATAAAAAACGTGAA+GGG + chr7_3:77860607-77860626 None:intergenic 20.0%
!! AGTATATATAAAAAACGTGA+AGG + chr7_3:77860608-77860627 None:intergenic 20.0%
!! CATTAGATTAATTAAATGGA+TGG + chr7_3:77860992-77861011 None:intergenic 20.0%
!! CATCCATTTAATTAATCTAA+TGG - chr7_3:77860990-77861009 Msa1126320:intron 20.0%
!! ACACCATTAGATTAATTAAA+TGG + chr7_3:77860996-77861015 None:intergenic 20.0%
!! ATCAAATATTGAATTGATTG+TGG + chr7_3:77861235-77861254 None:intergenic 20.0%
!!! ATTTTAATTGAATCGAATAG+TGG + chr7_3:77861299-77861318 None:intergenic 20.0%
!!! TTTTTTTTGCTATGATCAAT+TGG - chr7_3:77861494-77861513 Msa1126320:intron 20.0%
!!! ATTCTTTGTTTTGATCTTAA+TGG + chr7_3:77861642-77861661 None:intergenic 20.0%
!! ATTAAGATCAAAACAAAGAA+TGG - chr7_3:77861641-77861660 Msa1126320:intron 20.0%
!!! ATTTTGACTTTCCATTATTT+AGG + chr7_3:77861893-77861912 None:intergenic 20.0%
!!! ATAAGATTTTGATATGGATT+TGG + chr7_3:77862217-77862236 None:intergenic 20.0%
!! AAATCCATATCAAAATCTTA+TGG - chr7_3:77862216-77862235 Msa1126320:intron 20.0%
!!! TATTATCTGGAATGAAATAT+AGG - chr7_3:77862343-77862362 Msa1126320:intron 20.0%
! AAGTTACAACAGTCAATAAT+TGG + chr7_3:77859752-77859771 None:intergenic 25.0%
! CTACAACTATAGTTTACTAA+AGG + chr7_3:77860106-77860125 None:intergenic 25.0%
! GAACTTAATACAGAGATATT+GGG - chr7_3:77860212-77860231 Msa1126320:CDS 25.0%
!!! TGAACACTCTTTATTTTCTT+CGG + chr7_3:77860456-77860475 None:intergenic 25.0%
!!! ATAAAGAGTGTTCAAAGATT+TGG - chr7_3:77860462-77860481 Msa1126320:intron 25.0%
! AAAATATGTAAGACAGTAAG+TGG + chr7_3:77860489-77860508 None:intergenic 25.0%
!!! GTTTTAAACTCAGTTTGTAT+AGG - chr7_3:77860760-77860779 Msa1126320:intron 25.0%
!!! AGAAAATTTTGGGGATAATT+AGG + chr7_3:77861086-77861105 None:intergenic 25.0%
! AAGTAGAATTGAGTAATTCA+TGG + chr7_3:77861138-77861157 None:intergenic 25.0%
! ATTCATTTCATTGTTAAGGT+GGG + chr7_3:77861610-77861629 None:intergenic 25.0%
! TATTCATTTCATTGTTAAGG+TGG + chr7_3:77861611-77861630 None:intergenic 25.0%
! AACTATTCTATTCTTCCATA+CGG + chr7_3:77861856-77861875 None:intergenic 25.0%
! TATGGAAGAATAGAATAGTT+TGG - chr7_3:77861856-77861875 Msa1126320:intron 25.0%
! ATGGAAGAATAGAATAGTTT+GGG - chr7_3:77861857-77861876 Msa1126320:intron 25.0%
!!! AACACCATAAGATTTTGATA+TGG + chr7_3:77862223-77862242 None:intergenic 25.0%
! CAAAAGACATTGAATTTGAT+AGG + chr7_3:77862307-77862326 None:intergenic 25.0%
! AAAAAACAGATGACTAAATG+TGG + chr7_3:77862677-77862696 None:intergenic 25.0%
! GTAGAACATAGAAAGATAAA+AGG + chr7_3:77862711-77862730 None:intergenic 25.0%
!! GTGTTGTTATTAAAGCATAT+CGG - chr7_3:77863003-77863022 Msa1126320:intron 25.0%
! TTACTTAAATCACAGAACAA+GGG + chr7_3:77863144-77863163 None:intergenic 25.0%
! TTTTGATCAGGAGTTTATCA+AGG - chr7_3:77859915-77859934 Msa1126320:CDS 30.0%
! AACTAAAGCAATGTCTTTTC+AGG - chr7_3:77859989-77860008 Msa1126320:CDS 30.0%
AAACAAATGTGAAGTCCAAT+GGG + chr7_3:77860064-77860083 None:intergenic 30.0%
AGGGTGAACAAGAAAATATT+TGG + chr7_3:77860132-77860151 None:intergenic 30.0%
TAGACGAGAAACAAATGTTA+GGG + chr7_3:77860151-77860170 None:intergenic 30.0%
GGAACTTAATACAGAGATAT+TGG - chr7_3:77860211-77860230 Msa1126320:CDS 30.0%
AATCATGAACTATACATGTG+CGG + chr7_3:77860512-77860531 None:intergenic 30.0%
CACATGTATAGTTCATGATT+AGG - chr7_3:77860512-77860531 Msa1126320:intron 30.0%
TTAAATGGATGGATCAGATT+TGG + chr7_3:77860981-77861000 None:intergenic 30.0%
!! AAATTTTGGGGATAATTAGG+CGG + chr7_3:77861083-77861102 None:intergenic 30.0%
! AGATGGTGTAGAAAATTTTG+GGG + chr7_3:77861095-77861114 None:intergenic 30.0%
! GAGATGGTGTAGAAAATTTT+GGG + chr7_3:77861096-77861115 None:intergenic 30.0%
! AGAGATGGTGTAGAAAATTT+TGG + chr7_3:77861097-77861116 None:intergenic 30.0%
! AATTTTCTACACCATCTCTT+TGG - chr7_3:77861098-77861117 Msa1126320:intron 30.0%
AGAAGAATCTGAATTGTTGT+TGG + chr7_3:77861189-77861208 None:intergenic 30.0%
ATGAGATTGGGATCAAATTA+AGG - chr7_3:77861349-77861368 Msa1126320:intron 30.0%
TTGGGATCAAATTAAGGAAT+TGG - chr7_3:77861355-77861374 Msa1126320:intron 30.0%
TTAAGGAATTGGATTTGAGT+AGG - chr7_3:77861366-77861385 Msa1126320:intron 30.0%
TCAATTGGTATTTGATTGTG+TGG - chr7_3:77861509-77861528 Msa1126320:intron 30.0%
TTCATTTCATTGTTAAGGTG+GGG + chr7_3:77861609-77861628 None:intergenic 30.0%
GATCAAAACAAAGAATGGTT+AGG - chr7_3:77861646-77861665 Msa1126320:intron 30.0%
AACAAAGAATGGTTAGGATT+TGG - chr7_3:77861652-77861671 Msa1126320:intron 30.0%
GCAGAGGAAAATTAAAACTA+AGG + chr7_3:77861821-77861840 None:intergenic 30.0%
!!! TTTTAATTTTCCTCTGCAAC+CGG - chr7_3:77861824-77861843 Msa1126320:intron 30.0%
TGGAAGAATAGAATAGTTTG+GGG - chr7_3:77861858-77861877 Msa1126320:intron 30.0%
TGACTTTCCATTATTTAGGA+AGG + chr7_3:77861889-77861908 None:intergenic 30.0%
TGGAAAGTCAAAATATCAGT+TGG - chr7_3:77861899-77861918 Msa1126320:intron 30.0%
! TCTTTTTATGTCCAATCCAA+AGG - chr7_3:77862056-77862075 Msa1126320:intron 30.0%
TGAAATATAGGATGCTTTCA+AGG - chr7_3:77862355-77862374 Msa1126320:intron 30.0%
TGCAAATGTTTCGATGATTT+AGG - chr7_3:77862495-77862514 Msa1126320:intron 30.0%
GCAAATGTTTCGATGATTTA+GGG - chr7_3:77862496-77862515 Msa1126320:intron 30.0%
CAAATGTTTCGATGATTTAG+GGG - chr7_3:77862497-77862516 Msa1126320:intron 30.0%
AGGATTGTTCATTATTGACA+AGG - chr7_3:77862531-77862550 Msa1126320:intron 30.0%
TTGTTCATTATTGACAAGGA+AGG - chr7_3:77862535-77862554 Msa1126320:intron 30.0%
TGTTCATTATTGACAAGGAA+GGG - chr7_3:77862536-77862555 Msa1126320:intron 30.0%
AGTACTCTTTGCTAAGTTTA+GGG + chr7_3:77862858-77862877 None:intergenic 30.0%
AAGTACTCTTTGCTAAGTTT+AGG + chr7_3:77862859-77862878 None:intergenic 30.0%
TTGCGCATCATAACTTAAAA+TGG + chr7_3:77862981-77863000 None:intergenic 30.0%
CATAATTCACTCCAAAATCA+AGG + chr7_3:77863035-77863054 None:intergenic 30.0%
ACAGATAAGAACAGAAGAAA+TGG + chr7_3:77863068-77863087 None:intergenic 30.0%
CTTACTTAAATCACAGAACA+AGG + chr7_3:77863145-77863164 None:intergenic 30.0%
TTCTGTGATTTAAGTAAGCA+AGG - chr7_3:77863147-77863166 Msa1126320:intron 30.0%
TATTTCATTCATTTGCGTGC+TGG - chr7_3:77859717-77859736 Msa1126320:three_prime_UTR 35.0%
! TATCCTCTTTTTCTACCCAT+TGG - chr7_3:77860046-77860065 Msa1126320:intron 35.0%
CAAACAAATGTGAAGTCCAA+TGG + chr7_3:77860065-77860084 None:intergenic 35.0%
GTAGACGAGAAACAAATGTT+AGG + chr7_3:77860152-77860171 None:intergenic 35.0%
AGTTCATGATTAGGAGTTCT+AGG - chr7_3:77860521-77860540 Msa1126320:intron 35.0%
GTTCATGATTAGGAGTTCTA+GGG - chr7_3:77860522-77860541 Msa1126320:intron 35.0%
! TTGTGTAGTTTCTAGGTTGA+GGG - chr7_3:77860679-77860698 Msa1126320:intron 35.0%
!! AAATTAGTTTGCTGGTCTAG+TGG + chr7_3:77860807-77860826 None:intergenic 35.0%
TTCCCTAAATTGCTAATGTG+AGG - chr7_3:77861023-77861042 Msa1126320:intron 35.0%
CACCTCACATTAGCAATTTA+GGG + chr7_3:77861028-77861047 None:intergenic 35.0%
TCACCTCACATTAGCAATTT+AGG + chr7_3:77861029-77861048 None:intergenic 35.0%
AATTAGGCGGAGATTAAACA+AGG + chr7_3:77861070-77861089 None:intergenic 35.0%
ATTGAGTAATTCATGGACGT+TGG + chr7_3:77861131-77861150 None:intergenic 35.0%
GAATTAACTTCGTGTATCCA+TGG - chr7_3:77861163-77861182 Msa1126320:intron 35.0%
CAATTCAGATTCTTCTTCAC+TGG - chr7_3:77861193-77861212 Msa1126320:intron 35.0%
CAAGAAAGACGATGAAACTA+TGG - chr7_3:77861389-77861408 Msa1126320:intron 35.0%
ATTAAAACTAAGGAGTCCAG+TGG + chr7_3:77861811-77861830 None:intergenic 35.0%
GGAAGTTCCTTCCTAAATAA+TGG - chr7_3:77861879-77861898 Msa1126320:intron 35.0%
ATCAAGAAGAAGCAGACTTT+AGG + chr7_3:77862086-77862105 None:intergenic 35.0%
GTCTGCTTCTTCTTGATTAT+CGG - chr7_3:77862089-77862108 Msa1126320:intron 35.0%
! TTGGTGACATCAGATACTAA+AGG + chr7_3:77862198-77862217 None:intergenic 35.0%
GTGTCAAAATTTACCTGATC+AGG + chr7_3:77862252-77862271 None:intergenic 35.0%
!! AGTAGTGAATAGCTTTGTCT+AGG - chr7_3:77862402-77862421 Msa1126320:intron 35.0%
GTTCATTATTGACAAGGAAG+GGG - chr7_3:77862537-77862556 Msa1126320:intron 35.0%
GCAAGCTACATATAATTACC+TGG + chr7_3:77862630-77862649 None:intergenic 35.0%
TGCAAGTCCAATGCATATAT+GGG + chr7_3:77862754-77862773 None:intergenic 35.0%
!!! TAGCAAAGAGTACTTTTCTG+CGG - chr7_3:77862864-77862883 Msa1126320:CDS 35.0%
TTCAACGCTTATAAGCCTCA+AGG + chr7_3:77859682-77859701 None:intergenic 40.0%
!! GAGGCTTATAAGCGTTGAAA+TGG - chr7_3:77859683-77859702 Msa1126320:three_prime_UTR 40.0%
AAGAGCGAACTACCATTAGT+TGG - chr7_3:77859859-77859878 Msa1126320:three_prime_UTR 40.0%
AGAGCGAACTACCATTAGTT+GGG - chr7_3:77859860-77859879 Msa1126320:three_prime_UTR 40.0%
AGTCCAATGGGTAGAAAAAG+AGG + chr7_3:77860052-77860071 None:intergenic 40.0%
TAAGTTCCGCAAATTCTGCA+TGG + chr7_3:77860199-77860218 None:intergenic 40.0%
ATGAAATTTGCACCTGACAG+TGG - chr7_3:77860647-77860666 Msa1126320:CDS 40.0%
AAGTGCGTTGTGTAGTTTCT+AGG - chr7_3:77860672-77860691 Msa1126320:intron 40.0%
! GTTGTGTAGTTTCTAGGTTG+AGG - chr7_3:77860678-77860697 Msa1126320:intron 40.0%
! ATCTGAATTGTTGTTGGCCA+TGG + chr7_3:77861183-77861202 None:intergenic 40.0%
TTCAGATTCTTCTTCACTGG+TGG - chr7_3:77861196-77861215 Msa1126320:intron 40.0%
AAACATGGGAGCTATGAGAT+TGG - chr7_3:77861336-77861355 Msa1126320:intron 40.0%
AACATGGGAGCTATGAGATT+GGG - chr7_3:77861337-77861356 Msa1126320:intron 40.0%
CATCTGTAGTCAGAAGATCA+AGG + chr7_3:77861963-77861982 None:intergenic 40.0%
TAATGCATGCATGTGCTAGT+AGG + chr7_3:77862003-77862022 None:intergenic 40.0%
GTTCAAACAGACAGAAAGTC+CGG - chr7_3:77862150-77862169 Msa1126320:intron 40.0%
ATAGACCACAGTTTAGATCG+TGG + chr7_3:77862274-77862293 None:intergenic 40.0%
GACACAGATCCGAAAAAAAG+TGG + chr7_3:77862469-77862488 None:intergenic 40.0%
! ATTTAGGGGATAGCATTGAG+AGG - chr7_3:77862511-77862530 Msa1126320:intron 40.0%
!! GGTTGTTGATGGTAGAATGT+TGG + chr7_3:77862567-77862586 None:intergenic 40.0%
CATTCTACCATCAACAACCT+CGG - chr7_3:77862568-77862587 Msa1126320:CDS 40.0%
AAATGTGGTCATTCCTGGTA+TGG + chr7_3:77862662-77862681 None:intergenic 40.0%
TGACTAAATGTGGTCATTCC+TGG + chr7_3:77862667-77862686 None:intergenic 40.0%
GTTTGTCCCCATATATGCAT+TGG - chr7_3:77862744-77862763 Msa1126320:CDS 40.0%
GCAAGTCCAATGCATATATG+GGG + chr7_3:77862753-77862772 None:intergenic 40.0%
CTGCAAGTCCAATGCATATA+TGG + chr7_3:77862755-77862774 None:intergenic 40.0%
CATATATGCATTGGACTTGC+AGG - chr7_3:77862753-77862772 Msa1126320:CDS 40.0%
! AAGTTTAGGGTCTGGTTTCA+TGG + chr7_3:77862845-77862864 None:intergenic 40.0%
! TCTTTGCTAAGTTTAGGGTC+TGG + chr7_3:77862853-77862872 None:intergenic 40.0%
! AACTGCTCATCTGTATCGAT+TGG - chr7_3:77862921-77862940 Msa1126320:intron 40.0%
!! ACTGCTCATCTGTATCGATT+GGG - chr7_3:77862922-77862941 Msa1126320:intron 40.0%
!! GTATCGATTGGGGATGTAAA+AGG - chr7_3:77862933-77862952 Msa1126320:intron 40.0%
! ATCGGTGTACACCTTGATTT+TGG - chr7_3:77863021-77863040 Msa1126320:intron 40.0%
AACGCTTATAAGCCTCAAGG+AGG + chr7_3:77859679-77859698 None:intergenic 45.0%
ACAGCCTCAGCTTCAAAATC+TGG + chr7_3:77859895-77859914 None:intergenic 45.0%
!!! AGCTGAGGCTGTTTTTGATC+AGG - chr7_3:77859903-77859922 Msa1126320:exon 45.0%
TTCACATTTGTTTGCCCCAC+AGG - chr7_3:77860071-77860090 Msa1126320:intron 45.0%
CTTCGGTAGCAGATATGCAT+AGG + chr7_3:77860439-77860458 None:intergenic 45.0%
!! GAGTTCTAGGGAAATCTGCA+TGG - chr7_3:77860534-77860553 Msa1126320:intron 45.0%
!! AAAAAACGTGAAGGGTGCCA+CGG + chr7_3:77860599-77860618 None:intergenic 45.0%
TTGGTGTGTCTCCAAAGAGA+TGG + chr7_3:77861112-77861131 None:intergenic 45.0%
! ATTCTTCTTCACTGGTGGTG+TGG - chr7_3:77861201-77861220 Msa1126320:intron 45.0%
ACCGTAAGGATACCAGACAT+AGG - chr7_3:77861541-77861560 Msa1126320:intron 45.0%
CCCTATGTCTGGTATCCTTA+CGG + chr7_3:77861545-77861564 None:intergenic 45.0%
CCGTAAGGATACCAGACATA+GGG - chr7_3:77861542-77861561 Msa1126320:intron 45.0%
TAAGGATACCAGACATAGGG+AGG - chr7_3:77861545-77861564 Msa1126320:intron 45.0%
ATCTTCTTCCTCCCTATGTC+TGG + chr7_3:77861556-77861575 None:intergenic 45.0%
TCAACGAATTCGTTGACACC+TGG - chr7_3:77861677-77861696 Msa1126320:intron 45.0%
AAAACTAAGGAGTCCAGTGG+CGG + chr7_3:77861808-77861827 None:intergenic 45.0%
TTCTTCCATACGGATGTAGC+CGG + chr7_3:77861846-77861865 None:intergenic 45.0%
!! CTTTAGGAGTGCCTTTGGAT+TGG + chr7_3:77862070-77862089 None:intergenic 45.0%
TGTCTGTTTGAACCCATGCA+AGG + chr7_3:77862143-77862162 None:intergenic 45.0%
TGGTGTTCTCATTCCTGATC+AGG - chr7_3:77862236-77862255 Msa1126320:intron 45.0%
TGACACCACGATCTAAACTG+TGG - chr7_3:77862266-77862285 Msa1126320:intron 45.0%
ACCATCAACAACCTCGGAAT+TGG - chr7_3:77862574-77862593 Msa1126320:CDS 45.0%
ACCAATTCCGAGGTTGTTGA+TGG + chr7_3:77862578-77862597 None:intergenic 45.0%
CAACACTTCTACCAATTCCG+AGG + chr7_3:77862588-77862607 None:intergenic 45.0%
TGAGACAAAGAGAACACTCC+AGG - chr7_3:77862609-77862628 Msa1126320:intron 45.0%
TCATTCCTGGTATGGTGCAT+TGG + chr7_3:77862654-77862673 None:intergenic 45.0%
! TACTTTTCTGCGGTGTAGTG+TGG - chr7_3:77862874-77862893 Msa1126320:CDS 45.0%
!! CTGCTCATCTGTATCGATTG+GGG - chr7_3:77862923-77862942 Msa1126320:intron 45.0%
AAGCCTCAAGGAGGAAGAGT+CGG + chr7_3:77859670-77859689 None:intergenic 50.0%
!!! TGCGCCAGATTTTGAAGCTG+AGG - chr7_3:77859888-77859907 Msa1126320:exon 50.0%
CATTTGTTTGCCCCACAGGT+TGG - chr7_3:77860075-77860094 Msa1126320:intron 50.0%
TAAAGGGTCGACCAACCTGT+GGG + chr7_3:77860089-77860108 None:intergenic 50.0%
TGACCGCCATGCAGAATTTG+CGG - chr7_3:77860190-77860209 Msa1126320:CDS 50.0%
GTTCCGCAAATTCTGCATGG+CGG + chr7_3:77860196-77860215 None:intergenic 50.0%
GGGTGTTTCAGTTGACAGTG+TGG - chr7_3:77860232-77860251 Msa1126320:CDS 50.0%
ATCTGCATGGACTCCTTCAG+TGG - chr7_3:77860547-77860566 Msa1126320:CDS 50.0%
CAACGCACTTAACCACTGTC+AGG + chr7_3:77860662-77860681 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAC+AGG - chr7_3:77860919-77860938 Msa1126320:intron 50.0%
TCAACGAATCCGTTGACACC+TGG + chr7_3:77860956-77860975 None:intergenic 50.0%
TGTGGAAGAACCTGACCGTA+AGG - chr7_3:77861527-77861546 Msa1126320:intron 50.0%
TGTCTGGTATCCTTACGGTC+AGG + chr7_3:77861540-77861559 None:intergenic 50.0%
! CGTTGACACCTGGTGTCAAA+CGG - chr7_3:77861687-77861706 Msa1126320:intron 50.0%
GTTAGGATCCGTTTGACACC+AGG + chr7_3:77861698-77861717 None:intergenic 50.0%
TTTCAATCAAGCTCCGCCAC+TGG - chr7_3:77861792-77861811 Msa1126320:intron 50.0%
!! GCAGACTTTAGGAGTGCCTT+TGG + chr7_3:77862075-77862094 None:intergenic 50.0%
TGTAGTTCTCGCACCTTGCA+TGG - chr7_3:77862127-77862146 Msa1126320:intron 50.0%
GTAGTTCTCGCACCTTGCAT+GGG - chr7_3:77862128-77862147 Msa1126320:intron 50.0%
CAAACAGACAGAAAGTCCGG+TGG - chr7_3:77862153-77862172 Msa1126320:intron 50.0%
TTGCACCAATGCACCATACC+AGG - chr7_3:77862646-77862665 Msa1126320:intron 50.0%
GTTCTCCTGCACGTATTGCA+AGG + chr7_3:77862779-77862798 None:intergenic 50.0%
GGTTTCATGGACTTCTCACC+AGG + chr7_3:77862832-77862851 None:intergenic 50.0%
TTCCCGACTCTTCCTCCTTG+AGG - chr7_3:77859664-77859683 Msa1126320:three_prime_UTR 55.0%
AGCCTCAAGGAGGAAGAGTC+GGG + chr7_3:77859669-77859688 None:intergenic 55.0%
AAAGGGTCGACCAACCTGTG+GGG + chr7_3:77860088-77860107 None:intergenic 55.0%
CTAAAGGGTCGACCAACCTG+TGG + chr7_3:77860090-77860109 None:intergenic 55.0%
TGCATGGACTCCTTCAGTGG+CGG - chr7_3:77860550-77860569 Msa1126320:CDS 55.0%
! TTCAGTGGCGGGGCTTCTAT+GGG - chr7_3:77860562-77860581 Msa1126320:CDS 55.0%
AGACAGGATCCGTTGACACC+AGG - chr7_3:77860935-77860954 Msa1126320:intron 55.0%
! CCGTTGACACCTGGTGTCAA+CGG + chr7_3:77860947-77860966 None:intergenic 55.0%
CCGTTGACACCAGGTGTCAA+CGG - chr7_3:77860944-77860963 Msa1126320:intron 55.0%
TGCAACCGGCTACATCCGTA+TGG - chr7_3:77861838-77861857 Msa1126320:intron 55.0%
GACAGAAAGTCCGGTGGTCT+CGG - chr7_3:77862159-77862178 Msa1126320:intron 55.0%
GTTCAAGTCACCGAGACCAC+CGG + chr7_3:77862172-77862191 None:intergenic 55.0%
CAGCAGGGCAAACTTCATCG+GGG + chr7_3:77862801-77862820 None:intergenic 55.0%
CCAGCAGGGCAAACTTCATC+GGG + chr7_3:77862802-77862821 None:intergenic 55.0%
CCCAGCAGGGCAAACTTCAT+CGG + chr7_3:77862803-77862822 None:intergenic 55.0%
CCGATGAAGTTTGCCCTGCT+GGG - chr7_3:77862800-77862819 Msa1126320:intron 55.0%
ATGAAGTTTGCCCTGCTGGG+TGG - chr7_3:77862803-77862822 Msa1126320:intron 55.0%
GGCGCAGCGTTCCCAACTAA+TGG + chr7_3:77859874-77859893 None:intergenic 60.0%
GCATGGACTCCTTCAGTGGC+GGG - chr7_3:77860551-77860570 Msa1126320:CDS 60.0%
CATGGACTCCTTCAGTGGCG+GGG - chr7_3:77860552-77860571 Msa1126320:CDS 60.0%
CATAGAAGCCCCGCCACTGA+AGG + chr7_3:77860563-77860582 None:intergenic 60.0%
! CTTCAGTGGCGGGGCTTCTA+TGG - chr7_3:77860561-77860580 Msa1126320:CDS 60.0%
TATGGGCCGGGTTAATGCCG+TGG - chr7_3:77860579-77860598 Msa1126320:CDS 60.0%
! AGGGTGCCACGGCATTAACC+CGG + chr7_3:77860588-77860607 None:intergenic 60.0%
ACGGATGTAGCCGGTTGCAG+AGG + chr7_3:77861837-77861856 None:intergenic 60.0%
GCAGGCCTTGCAATACGTGC+AGG - chr7_3:77862771-77862790 Msa1126320:intron 60.0%
CCCGATGAAGTTTGCCCTGC+TGG - chr7_3:77862799-77862818 Msa1126320:intron 60.0%
CACCAGGCTTCCACCCAGCA+GGG + chr7_3:77862816-77862835 None:intergenic 65.0%
TCACCAGGCTTCCACCCAGC+AGG + chr7_3:77862817-77862836 None:intergenic 65.0%
! GTGGCGGGGCTTCTATGGGC+CGG - chr7_3:77860566-77860585 Msa1126320:CDS 70.0%
TGGCGGGGCTTCTATGGGCC+GGG - chr7_3:77860567-77860586 Msa1126320:CDS 70.0%
TGCCCTGCTGGGTGGAAGCC+TGG - chr7_3:77862811-77862830 Msa1126320:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77859613 77863185 77859613 ID=Msa1126320;Name=Msa1126320
chr7_3 mRNA 77859613 77863185 77859613 ID=Msa1126320-mRNA-1;Parent=Msa1126320;Name=Msa1126320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.83|0.71|0.85|1|1|7|294|199
chr7_3 exon 77859613 77860023 77859613 ID=Msa1126320-mRNA-1:exon:21616;Parent=Msa1126320-mRNA-1
chr7_3 exon 77860168 77860281 77860168 ID=Msa1126320-mRNA-1:exon:21615;Parent=Msa1126320-mRNA-1
chr7_3 exon 77860541 77860666 77860541 ID=Msa1126320-mRNA-1:exon:21614;Parent=Msa1126320-mRNA-1
chr7_3 exon 77862545 77862624 77862545 ID=Msa1126320-mRNA-1:exon:21613;Parent=Msa1126320-mRNA-1
chr7_3 exon 77862706 77862787 77862706 ID=Msa1126320-mRNA-1:exon:21612;Parent=Msa1126320-mRNA-1
chr7_3 exon 77862862 77862936 77862862 ID=Msa1126320-mRNA-1:exon:21611;Parent=Msa1126320-mRNA-1
chr7_3 exon 77863180 77863185 77863180 ID=Msa1126320-mRNA-1:exon:21610;Parent=Msa1126320-mRNA-1
chr7_3 CDS 77863180 77863185 77863180 ID=Msa1126320-mRNA-1:cds;Parent=Msa1126320-mRNA-1
chr7_3 CDS 77862862 77862936 77862862 ID=Msa1126320-mRNA-1:cds;Parent=Msa1126320-mRNA-1
chr7_3 CDS 77862706 77862787 77862706 ID=Msa1126320-mRNA-1:cds;Parent=Msa1126320-mRNA-1
chr7_3 CDS 77862545 77862624 77862545 ID=Msa1126320-mRNA-1:cds;Parent=Msa1126320-mRNA-1
chr7_3 CDS 77860541 77860666 77860541 ID=Msa1126320-mRNA-1:cds;Parent=Msa1126320-mRNA-1
chr7_3 CDS 77860168 77860281 77860168 ID=Msa1126320-mRNA-1:cds;Parent=Msa1126320-mRNA-1
chr7_3 CDS 77859907 77860023 77859907 ID=Msa1126320-mRNA-1:cds;Parent=Msa1126320-mRNA-1
chr7_3 three_prime_UTR 77859613 77859906 77859613 ID=Msa1126320-mRNA-1:three_prime_utr;Parent=Msa1126320-mRNA-1
Gene Sequence

>Msa1126320

ATGATTAGCGAACTACCATTAGTTGGGAACGCTGCGCCAGATTTTGAAGCTGAGGCTGTTTTTGATCAGGAGTTTATCAAGGTTAAACTATCTGAATATATTGGGAAGAAATATGTTATCCTCTTTTTCTACCCATTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGCCATGCAGAATTTGCGGAACTTAATACAGAGATATTGGGTGTTTCAGTTGACAGTGTGTTCTCGCACCTTGCATGGGTTCAAACAGACAGAAAGTCCGGTGGTCTCGGTGACTTGAACTATCCTTTAGTATCTGATGTCACCAAATCCATATCAAAATCTTATGGTGTTCTCATTCCTGATCAGGGGATAGCATTGAGAGGATTGTTCATTATTGACAAGGAAGGGGTTATCCAACATTCTACCATCAACAACCTCGGAATTGGTAGAAGTGTTGATGAGACAAAGAGAACACTCCAGGCCTTGCAATACGTGCAGGAGAACCCCGATGAAGTTTGCCCTGCTGGGTGGAAGCCTGGTGAGAAGTCCATGAAACCAGACCCTAAACTTAGCAAAGAGTACTTTTCTGCGGTGTAG

Protein sequence

>Msa1126320

MISELPLVGNAAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFAELNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAV*