AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0420810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420810 MtrunA17_Chr3g0120741 88.218 331 28 5 1 327 1 324 0.0 553
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420810 AT2G04360.1 60.806 273 103 2 55 327 49 317 1.55e-120 350
Msa0420810 AT2G04360.2 52.866 314 103 3 55 327 49 358 2.21e-112 330
Msa0420810 AT2G04360.4 68.116 207 63 1 121 327 17 220 6.56e-103 301
Msa0420810 AT2G04360.3 56.881 218 89 3 55 271 49 262 1.54e-85 259

Find 88 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAACACTGGCACCATTT+TGG 0.187033 3_2:+69574939 Msa0420810:CDS
ATATTACCGGTGTCTGGTTT+GGG 0.250210 3_2:-69573313 None:intergenic
TGTTTCTGAATGGTATATTA+TGG 0.293647 3_2:+69573496 Msa0420810:CDS
ATGATATGACTGCTAGAAAA+TGG 0.306456 3_2:+69574969 Msa0420810:CDS
AGTTTCATTGATACCATTGC+TGG 0.307701 3_2:+69575124 Msa0420810:CDS
AATCAGATATTGCTTGCTTC+GGG 0.314268 3_2:+69574584 Msa0420810:intron
GTTTCTGAATGGTATATTAT+GGG 0.317642 3_2:+69573497 Msa0420810:CDS
TTGAAATTGATTGTTGAGTT+TGG 0.330756 3_2:+69575281 Msa0420810:three_prime_UTR
TATTATGGGTTTGTGGCCTT+TGG 0.341981 3_2:+69573511 Msa0420810:CDS
ACAGGTTTGACAAAGGTTCT+TGG 0.347641 3_2:+69575093 Msa0420810:intron
ATATCATTGTAAACCCAAAA+TGG 0.351254 3_2:-69574953 None:intergenic
TTAAGTTGTGTTTCTTCAAC+AGG 0.358500 3_2:-69574321 None:intergenic
AAATGTGTATTCATATTCAT+TGG 0.360711 3_2:-69575243 None:intergenic
TCTGCAAAGATATGTCTAAA+TGG 0.362447 3_2:-69575389 None:intergenic
TATATTACCGGTGTCTGGTT+TGG 0.369304 3_2:-69573314 None:intergenic
GGTTTCCATAGCACAAAATA+AGG 0.372685 3_2:-69574288 None:intergenic
AGTTGAAAGAAGTTTGATTA+TGG 0.377746 3_2:+69572950 Msa0420810:exon
ATTTGCTTTCCCTGAAGTAC+TGG 0.383210 3_2:-69574664 None:intergenic
TTGCTGCTACACCATCATTT+CGG 0.385003 3_2:+69573132 Msa0420810:CDS
AGCAATGGTATCAATGAAAC+TGG 0.385121 3_2:-69575122 None:intergenic
AACAATAACAGTAGTGGCCT+CGG 0.412664 3_2:+69573049 Msa0420810:CDS
AAGTTACAAGTTACAAGATT+GGG 0.413662 3_2:-69572990 None:intergenic
GAAGTTACAAGTTACAAGAT+TGG 0.425120 3_2:-69572991 None:intergenic
ATAATTTACGCTAGTTTAGC+CGG 0.429459 3_2:+69574617 Msa0420810:CDS
TTGAATTTGAAAGGAGATGA+TGG 0.440690 3_2:+69573452 Msa0420810:CDS
AGACGTTGAACTTCTCTTCA+AGG 0.442929 3_2:-69575446 None:intergenic
GGTAACTTGACTCTCTTTGT+TGG 0.445634 3_2:-69573186 None:intergenic
TAGTATATATTACCGGTGTC+TGG 0.446627 3_2:-69573319 None:intergenic
ATATTGCTTGCTTCGGGGAT+AGG 0.448524 3_2:+69574590 Msa0420810:CDS
CTCCACAACACTGCTGTTGT+TGG 0.454329 3_2:-69573207 None:intergenic
GAATCAGATATTGCTTGCTT+CGG 0.458917 3_2:+69574583 Msa0420810:intron
AATGGTATATTATGGGTTTG+TGG 0.460874 3_2:+69573504 Msa0420810:CDS
TCTTCAACAGGAGGCGGTGG+AGG 0.472797 3_2:-69574309 None:intergenic
AATTGATTGTTGAGTTTGGT+TGG 0.481172 3_2:+69575285 Msa0420810:three_prime_UTR
GTTTCATTGATACCATTGCT+GGG 0.486547 3_2:+69575125 Msa0420810:CDS
CAACAGCAGTGTTGTGGAGG+AGG 0.487609 3_2:+69573211 Msa0420810:CDS
TTCTTTCCACACATCTTCCC+CGG 0.488058 3_2:-69574636 None:intergenic
TGGATTCACTCAGACTCAAC+AGG 0.489510 3_2:-69575206 None:intergenic
CTACTCTTTCTCCGAAATGA+TGG 0.494266 3_2:-69573143 None:intergenic
ATTGATTGTTGAGTTTGGTT+GGG 0.497495 3_2:+69575286 Msa0420810:three_prime_UTR
GCAGACAGGAAGGGCCATAC+AGG 0.516734 3_2:-69574234 None:intergenic
AATGGATGTCAATATTGCTA+TGG 0.521433 3_2:-69575371 None:intergenic
TAATTTACGCTAGTTTAGCC+GGG 0.521606 3_2:+69574618 Msa0420810:CDS
CATTGGCCGTATGTATCAGA+TGG 0.526906 3_2:-69575226 None:intergenic
TGAGAGTAAAGTAAAATCAA+TGG 0.530434 3_2:-69574921 None:intergenic
AGGAGTTTGTGCAATGGCAG+AGG 0.533565 3_2:-69575186 None:intergenic
AGCATGCTGTTACTTCCCAC+TGG 0.534575 3_2:+69573539 Msa0420810:CDS
TGTTACTTCCCACTGGAAGA+AGG 0.536692 3_2:+69573546 Msa0420810:CDS
CTGCTTTATACATTCTCCTA+CGG 0.539301 3_2:+69575150 Msa0420810:CDS
ATCAAGTGCTTGTTTCTGAA+TGG 0.542025 3_2:+69573486 Msa0420810:CDS
GTTTCTTCAACAGGAGGCGG+TGG 0.547408 3_2:-69574312 None:intergenic
CGTAGGAGAATGTATAAAGC+AGG 0.556966 3_2:-69575149 None:intergenic
TTTCAACTTCAAATCGCACA+AGG 0.559541 3_2:-69572935 None:intergenic
TACCAACAACAGCAGTGTTG+TGG 0.561620 3_2:+69573205 Msa0420810:CDS
ACAATAACAGTAGTGGCCTC+GGG 0.564855 3_2:+69573050 Msa0420810:CDS
AGGTTGATAGTGAGGGCCGT+AGG 0.564890 3_2:-69575166 None:intergenic
TGTGTTTCTTCAACAGGAGG+CGG 0.566833 3_2:-69574315 None:intergenic
GTGAATCCATCTGATACATA+CGG 0.583903 3_2:+69575220 Msa0420810:exon
TAAAATCAATGGACATAACA+TGG 0.590376 3_2:-69574910 None:intergenic
TATAAAGCAGGCCCCAGCAA+TGG 0.590930 3_2:-69575137 None:intergenic
AGCAGTGTTGTGGAGGAGGA+AGG 0.592189 3_2:+69573215 Msa0420810:CDS
TCAACTTCAAATCGCACAAG+GGG 0.601051 3_2:-69572933 None:intergenic
GGGAAATACCTTCTTCCAGT+GGG 0.602141 3_2:-69573554 None:intergenic
AGTTGTGTTTCTTCAACAGG+AGG 0.602142 3_2:-69574318 None:intergenic
TTTCATTGATACCATTGCTG+GGG 0.604297 3_2:+69575126 Msa0420810:CDS
TATTACCGGTGTCTGGTTTG+GGG 0.608819 3_2:-69573312 None:intergenic
TTCAACTTCAAATCGCACAA+GGG 0.610767 3_2:-69572934 None:intergenic
TGGGAAATACCTTCTTCCAG+TGG 0.612952 3_2:-69573555 None:intergenic
GAAAGCAACAATAACAGTAG+TGG 0.613050 3_2:+69573043 Msa0420810:CDS
TCTCTCCCCAAACCAGACAC+CGG 0.613768 3_2:+69573307 Msa0420810:CDS
GTTTAGCCGGGGAAGATGTG+TGG 0.614056 3_2:+69574630 Msa0420810:CDS
TCAATATACAGGTTTGACAA+AGG 0.614796 3_2:+69575086 Msa0420810:intron
ATCAGATATTGCTTGCTTCG+GGG 0.617901 3_2:+69574585 Msa0420810:intron
AACTTCAAATCGCACAAGGG+GGG 0.621546 3_2:-69572931 None:intergenic
CAACAACAGCAGTGTTGTGG+AGG 0.624485 3_2:+69573208 Msa0420810:CDS
AACAGCATGCTATATACCAA+AGG 0.624686 3_2:-69573527 None:intergenic
TGCTATGGACTAGTGAAAAG+TGG 0.626324 3_2:-69575356 None:intergenic
AATGGCAGAGGTTGATAGTG+AGG 0.627029 3_2:-69575174 None:intergenic
ATGGCAGAGGTTGATAGTGA+GGG 0.631651 3_2:-69575173 None:intergenic
TGATGGTGTAGCAGCAACAG+AGG 0.642844 3_2:-69573126 None:intergenic
CTCAACAGGAGTTTGTGCAA+TGG 0.646011 3_2:-69575192 None:intergenic
GGAATCGAAAGTCACTGCAA+CGG 0.649464 3_2:+69574365 Msa0420810:CDS
AAGAAACACAACTTAAAACA+TGG 0.655934 3_2:+69574328 Msa0420810:CDS
GACATACTATAGTTATGCTG+TGG 0.656755 3_2:-69575332 None:intergenic
GATGGTGTAGCAGCAACAGA+GGG 0.657144 3_2:-69573125 None:intergenic
CAACTTCAAATCGCACAAGG+GGG 0.665215 3_2:-69572932 None:intergenic
TAATCTGCAACAACATCCCG+AGG 0.679788 3_2:-69573066 None:intergenic
AATTTACGCTAGTTTAGCCG+GGG 0.690077 3_2:+69574619 Msa0420810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATATAGTATGATA+GGG - chr3_2:69575053-69575072 None:intergenic 15.0%
!!! TATCTTTTATATAGTATGAT+AGG - chr3_2:69575054-69575073 None:intergenic 15.0%
!!! AATTTTACTCTTTCTCTTAT+GGG + chr3_2:69573259-69573278 Msa0420810:CDS 20.0%
!! GATAAGATAGTATATATTAC+CGG - chr3_2:69573329-69573348 None:intergenic 20.0%
!!! AAAAAGCTTTTGAATTTGAA+AGG + chr3_2:69573443-69573462 Msa0420810:CDS 20.0%
!! TAGTAAATTGAGTGAATAAT+AGG - chr3_2:69573602-69573621 None:intergenic 20.0%
!!! TTTTCATAAGTTATCCTAAA+AGG + chr3_2:69573713-69573732 Msa0420810:intron 20.0%
!! AATCATCAAAAATTTAAGCA+CGG + chr3_2:69573923-69573942 Msa0420810:intron 20.0%
!! TTCGATTCCAAAAAATTTAA+TGG - chr3_2:69574354-69574373 None:intergenic 20.0%
!! TAAATAATAGTATCCATGAT+TGG + chr3_2:69574445-69574464 Msa0420810:intron 20.0%
!!! TTAAAAATATTCAGGTTTTC+TGG - chr3_2:69574531-69574550 None:intergenic 20.0%
!! AGCTTAAAATAATGAATACA+AGG - chr3_2:69574734-69574753 None:intergenic 20.0%
!! AAATGTGTATTCATATTCAT+TGG - chr3_2:69575246-69575265 None:intergenic 20.0%
!! GATTAATTTTTGTGTTCACT+AGG + chr3_2:69572871-69572890 Msa0420810:five_prime_UTR 25.0%
! AGTTGAAAGAAGTTTGATTA+TGG + chr3_2:69572950-69572969 Msa0420810:exon 25.0%
! AAGTTACAAGTTACAAGATT+GGG - chr3_2:69572993-69573012 None:intergenic 25.0%
!!! ATTTTTTGTATTTCAGAGTG+GGG - chr3_2:69573016-69573035 None:intergenic 25.0%
!!! GATTTTTTGTATTTCAGAGT+GGG - chr3_2:69573017-69573036 None:intergenic 25.0%
!!! TGATTTTTTGTATTTCAGAG+TGG - chr3_2:69573018-69573037 None:intergenic 25.0%
!! CAATTTTACTCTTTCTCTTA+TGG + chr3_2:69573258-69573277 Msa0420810:CDS 25.0%
!! TGTTTCTGAATGGTATATTA+TGG + chr3_2:69573496-69573515 Msa0420810:CDS 25.0%
! GTTTCTGAATGGTATATTAT+GGG + chr3_2:69573497-69573516 Msa0420810:CDS 25.0%
! AGTGAATCCTATATGAAAAT+GGG - chr3_2:69573577-69573596 None:intergenic 25.0%
! AAGTGAATCCTATATGAAAA+TGG - chr3_2:69573578-69573597 None:intergenic 25.0%
!! CTAGTTATAATAAGCCTTTT+AGG - chr3_2:69573730-69573749 None:intergenic 25.0%
! ATATTATAGCTAGCTAAGTT+TGG - chr3_2:69573853-69573872 None:intergenic 25.0%
!! TAACATTCAACCATTGTTTT+AGG + chr3_2:69573971-69573990 Msa0420810:intron 25.0%
!!! AACATTCAACCATTGTTTTA+GGG + chr3_2:69573972-69573991 Msa0420810:intron 25.0%
! AATTATAATACTATCCTGAG+TGG - chr3_2:69574015-69574034 None:intergenic 25.0%
!!! TTATTAATTCTGAAATGCCA+GGG - chr3_2:69574074-69574093 None:intergenic 25.0%
! AAGAAACACAACTTAAAACA+TGG + chr3_2:69574328-69574347 Msa0420810:CDS 25.0%
!!! AACATGGCCATTAAATTTTT+TGG + chr3_2:69574344-69574363 Msa0420810:CDS 25.0%
! ATAATTCAATCAACAGTTAC+TGG + chr3_2:69574798-69574817 Msa0420810:intron 25.0%
! TAAAATCAATGGACATAACA+TGG - chr3_2:69574913-69574932 None:intergenic 25.0%
! TGAGAGTAAAGTAAAATCAA+TGG - chr3_2:69574924-69574943 None:intergenic 25.0%
! ATATCATTGTAAACCCAAAA+TGG - chr3_2:69574956-69574975 None:intergenic 25.0%
! TTGAAATTGATTGTTGAGTT+TGG + chr3_2:69575281-69575300 Msa0420810:three_prime_UTR 25.0%
!!! TCAACGTCTAACTTTTTTTT+TGG + chr3_2:69575460-69575479 Msa0420810:three_prime_UTR 25.0%
GAAGTTACAAGTTACAAGAT+TGG - chr3_2:69572994-69573013 None:intergenic 30.0%
! GCTTTCATTTTCATTACTAG+AGG - chr3_2:69573104-69573123 None:intergenic 30.0%
TTGAATTTGAAAGGAGATGA+TGG + chr3_2:69573452-69573471 Msa0420810:CDS 30.0%
AATGGTATATTATGGGTTTG+TGG + chr3_2:69573504-69573523 Msa0420810:CDS 30.0%
! GGTATTTCCCATTTTCATAT+AGG + chr3_2:69573567-69573586 Msa0420810:intron 30.0%
CAACAATTCTGTTACAAAGA+TGG - chr3_2:69573634-69573653 None:intergenic 30.0%
!! AGTTATTTCTGTAGTGAAAG+AGG + chr3_2:69573674-69573693 Msa0420810:intron 30.0%
AATGGTTGAATGTTACATCT+TGG - chr3_2:69573966-69573985 None:intergenic 30.0%
AAAACTCTACAGAATGTAAG+AGG - chr3_2:69574043-69574062 None:intergenic 30.0%
!!! TAGAGTTTTAACTTATACCC+TGG + chr3_2:69574054-69574073 Msa0420810:intron 30.0%
!! GTTATTAATTCTGAAATGCC+AGG - chr3_2:69574075-69574094 None:intergenic 30.0%
ACAACATTGTTTACATAGCA+GGG - chr3_2:69574142-69574161 None:intergenic 30.0%
AACAACATTGTTTACATAGC+AGG - chr3_2:69574143-69574162 None:intergenic 30.0%
!!! TGACGATTTAGTTTTTGCAT+TGG + chr3_2:69574176-69574195 Msa0420810:intron 30.0%
!!! TTCTTCCTTATTTTGTGCTA+TGG + chr3_2:69574283-69574302 Msa0420810:CDS 30.0%
! TTAAGTTGTGTTTCTTCAAC+AGG - chr3_2:69574324-69574343 None:intergenic 30.0%
CAACTTTACAATGTTAGGTT+GGG - chr3_2:69574403-69574422 None:intergenic 30.0%
ACAACTTTACAATGTTAGGT+TGG - chr3_2:69574404-69574423 None:intergenic 30.0%
TGCAACAACTTTACAATGTT+AGG - chr3_2:69574408-69574427 None:intergenic 30.0%
ATGAACAAAATCACCAATCA+TGG - chr3_2:69574461-69574480 None:intergenic 30.0%
TACAACAGGAGGTTATTATT+AGG - chr3_2:69574491-69574510 None:intergenic 30.0%
ACGACGAGTTAAAAATATTC+AGG - chr3_2:69574539-69574558 None:intergenic 30.0%
! ATAATTTACGCTAGTTTAGC+CGG + chr3_2:69574617-69574636 Msa0420810:CDS 30.0%
! AAGAATTTTTCCAGTACTTC+AGG + chr3_2:69574654-69574673 Msa0420810:CDS 30.0%
! AGAATTTTTCCAGTACTTCA+GGG + chr3_2:69574655-69574674 Msa0420810:CDS 30.0%
! AACTCAGCTTTTCATATTGT+TGG + chr3_2:69574698-69574717 Msa0420810:intron 30.0%
CTTCTCTAATATTGTTACGA+TGG + chr3_2:69574769-69574788 Msa0420810:intron 30.0%
ACAACCTAGTTAGTTACATT+AGG + chr3_2:69574843-69574862 Msa0420810:intron 30.0%
!! ATTTTAGCAAGTTGCAGATT+TGG - chr3_2:69574869-69574888 None:intergenic 30.0%
! TTTTACTTTACTCTCAACAC+TGG + chr3_2:69574928-69574947 Msa0420810:CDS 30.0%
ATGATATGACTGCTAGAAAA+TGG + chr3_2:69574969-69574988 Msa0420810:CDS 30.0%
TATATAGTATGATAGGGACT+AGG - chr3_2:69575047-69575066 None:intergenic 30.0%
TCAATATACAGGTTTGACAA+AGG + chr3_2:69575086-69575105 Msa0420810:intron 30.0%
AATTGATTGTTGAGTTTGGT+TGG + chr3_2:69575285-69575304 Msa0420810:three_prime_UTR 30.0%
ATTGATTGTTGAGTTTGGTT+GGG + chr3_2:69575286-69575305 Msa0420810:three_prime_UTR 30.0%
AATGGATGTCAATATTGCTA+TGG - chr3_2:69575374-69575393 None:intergenic 30.0%
TCTGCAAAGATATGTCTAAA+TGG - chr3_2:69575392-69575411 None:intergenic 30.0%
TTCAACTTCAAATCGCACAA+GGG - chr3_2:69572937-69572956 None:intergenic 35.0%
TTTCAACTTCAAATCGCACA+AGG - chr3_2:69572938-69572957 None:intergenic 35.0%
GAAAGCAACAATAACAGTAG+TGG + chr3_2:69573043-69573062 Msa0420810:CDS 35.0%
TAGTATATATTACCGGTGTC+TGG - chr3_2:69573322-69573341 None:intergenic 35.0%
!! ATCAAGTGCTTGTTTCTGAA+TGG + chr3_2:69573486-69573505 Msa0420810:CDS 35.0%
AACAGCATGCTATATACCAA+AGG - chr3_2:69573530-69573549 None:intergenic 35.0%
TTGAACTGACCCTAAAACAA+TGG - chr3_2:69573984-69574003 None:intergenic 35.0%
AAAAATGAAGCAGACAGGAA+GGG - chr3_2:69574246-69574265 None:intergenic 35.0%
!! TTCCTGTCTGCTTCATTTTT+CGG + chr3_2:69574246-69574265 Msa0420810:CDS 35.0%
GGTTTCCATAGCACAAAATA+AGG - chr3_2:69574291-69574310 None:intergenic 35.0%
AGTAAGAATGTGACTACAAC+AGG - chr3_2:69574505-69574524 None:intergenic 35.0%
GAATCAGATATTGCTTGCTT+CGG + chr3_2:69574583-69574602 Msa0420810:intron 35.0%
AATCAGATATTGCTTGCTTC+GGG + chr3_2:69574584-69574603 Msa0420810:intron 35.0%
! TAATTTACGCTAGTTTAGCC+GGG + chr3_2:69574618-69574637 Msa0420810:CDS 35.0%
TTGGCCTAATGTAACTAACT+AGG - chr3_2:69574850-69574869 None:intergenic 35.0%
!! ATCTGCAACTTGCTAAAATC+TGG + chr3_2:69574870-69574889 Msa0420810:intron 35.0%
GTAATGCTCGTTCAATATAC+AGG + chr3_2:69575075-69575094 Msa0420810:intron 35.0%
AGCAATGGTATCAATGAAAC+TGG - chr3_2:69575125-69575144 None:intergenic 35.0%
AGTTTCATTGATACCATTGC+TGG + chr3_2:69575124-69575143 Msa0420810:CDS 35.0%
GTTTCATTGATACCATTGCT+GGG + chr3_2:69575125-69575144 Msa0420810:CDS 35.0%
TTTCATTGATACCATTGCTG+GGG + chr3_2:69575126-69575145 Msa0420810:CDS 35.0%
CTGCTTTATACATTCTCCTA+CGG + chr3_2:69575150-69575169 Msa0420810:CDS 35.0%
GTGAATCCATCTGATACATA+CGG + chr3_2:69575220-69575239 Msa0420810:exon 35.0%
GACATACTATAGTTATGCTG+TGG - chr3_2:69575335-69575354 None:intergenic 35.0%
! AAGGGGGGTGTAAATTACAA+TGG - chr3_2:69572919-69572938 None:intergenic 40.0%
TCAACTTCAAATCGCACAAG+GGG - chr3_2:69572936-69572955 None:intergenic 40.0%
AACAATAACAGTAGTGGCCT+CGG + chr3_2:69573049-69573068 Msa0420810:CDS 40.0%
TTGCTGCTACACCATCATTT+CGG + chr3_2:69573132-69573151 Msa0420810:CDS 40.0%
CTACTCTTTCTCCGAAATGA+TGG - chr3_2:69573146-69573165 None:intergenic 40.0%
GGTAACTTGACTCTCTTTGT+TGG - chr3_2:69573189-69573208 None:intergenic 40.0%
AGGAGGAAGGAAAAAGAGAT+TGG + chr3_2:69573228-69573247 Msa0420810:CDS 40.0%
! ATATTACCGGTGTCTGGTTT+GGG - chr3_2:69573316-69573335 None:intergenic 40.0%
TATATTACCGGTGTCTGGTT+TGG - chr3_2:69573317-69573336 None:intergenic 40.0%
AATGATTCTGTCTGTAGTCG+AGG + chr3_2:69573405-69573424 Msa0420810:intron 40.0%
ATGATTCTGTCTGTAGTCGA+GGG + chr3_2:69573406-69573425 Msa0420810:intron 40.0%
TATTATGGGTTTGTGGCCTT+TGG + chr3_2:69573511-69573530 Msa0420810:CDS 40.0%
ACCAATGTGATCGAAACGAA+GGG - chr3_2:69573902-69573921 None:intergenic 40.0%
TACCAATGTGATCGAAACGA+AGG - chr3_2:69573903-69573922 None:intergenic 40.0%
GTTCAATAGAGTTTCCACTC+AGG + chr3_2:69573998-69574017 Msa0420810:intron 40.0%
! TTGCCTACTTTGAGCTTTGT+GGG + chr3_2:69574097-69574116 Msa0420810:intron 40.0%
ATTCCCACAAAGCTCAAAGT+AGG - chr3_2:69574103-69574122 None:intergenic 40.0%
CATTGTTTACATAGCAGGGT+CGG - chr3_2:69574138-69574157 None:intergenic 40.0%
CAAAAAGCAGTGTTCCTGTA+TGG + chr3_2:69574220-69574239 Msa0420810:CDS 40.0%
GAAAAATGAAGCAGACAGGA+AGG - chr3_2:69574247-69574266 None:intergenic 40.0%
AGTTGTGTTTCTTCAACAGG+AGG - chr3_2:69574321-69574340 None:intergenic 40.0%
AAGAATGTGACTACAACAGG+AGG - chr3_2:69574502-69574521 None:intergenic 40.0%
ATCAGATATTGCTTGCTTCG+GGG + chr3_2:69574585-69574604 Msa0420810:intron 40.0%
! AATTTACGCTAGTTTAGCCG+GGG + chr3_2:69574619-69574638 Msa0420810:CDS 40.0%
ATTTGCTTTCCCTGAAGTAC+TGG - chr3_2:69574667-69574686 None:intergenic 40.0%
! AGCTTTTCATATTGTTGGCC+TGG + chr3_2:69574703-69574722 Msa0420810:intron 40.0%
TCAATCAACAGTTACTGGAC+TGG + chr3_2:69574803-69574822 Msa0420810:intron 40.0%
TAACTAGGTTGTAGCAGACT+AGG - chr3_2:69574835-69574854 None:intergenic 40.0%
ACAGGTTTGACAAAGGTTCT+TGG + chr3_2:69575093-69575112 Msa0420810:intron 40.0%
CGTAGGAGAATGTATAAAGC+AGG - chr3_2:69575152-69575171 None:intergenic 40.0%
!! TGCTATGGACTAGTGAAAAG+TGG - chr3_2:69575359-69575378 None:intergenic 40.0%
AGACGTTGAACTTCTCTTCA+AGG - chr3_2:69575449-69575468 None:intergenic 40.0%
AACTTCAAATCGCACAAGGG+GGG - chr3_2:69572934-69572953 None:intergenic 45.0%
CAACTTCAAATCGCACAAGG+GGG - chr3_2:69572935-69572954 None:intergenic 45.0%
ACAATAACAGTAGTGGCCTC+GGG + chr3_2:69573050-69573069 Msa0420810:CDS 45.0%
TAATCTGCAACAACATCCCG+AGG - chr3_2:69573069-69573088 None:intergenic 45.0%
TACCAACAACAGCAGTGTTG+TGG + chr3_2:69573205-69573224 Msa0420810:CDS 45.0%
! TATTACCGGTGTCTGGTTTG+GGG - chr3_2:69573315-69573334 None:intergenic 45.0%
! TGTTACTTCCCACTGGAAGA+AGG + chr3_2:69573546-69573565 Msa0420810:CDS 45.0%
GGGAAATACCTTCTTCCAGT+GGG - chr3_2:69573557-69573576 None:intergenic 45.0%
TGGGAAATACCTTCTTCCAG+TGG - chr3_2:69573558-69573577 None:intergenic 45.0%
AATGTGATCGAAACGAAGGG+TGG - chr3_2:69573899-69573918 None:intergenic 45.0%
ACCCTTCGTTTCGATCACAT+TGG + chr3_2:69573898-69573917 Msa0420810:intron 45.0%
CTTGCCTACTTTGAGCTTTG+TGG + chr3_2:69574096-69574115 Msa0420810:intron 45.0%
!!! GAACACTGCTTTTTGAGCTG+TGG - chr3_2:69574215-69574234 None:intergenic 45.0%
CACCGAAAAATGAAGCAGAC+AGG - chr3_2:69574251-69574270 None:intergenic 45.0%
!! CTGTCTGCTTCATTTTTCGG+TGG + chr3_2:69574249-69574268 Msa0420810:CDS 45.0%
TGTGTTTCTTCAACAGGAGG+CGG - chr3_2:69574318-69574337 None:intergenic 45.0%
GGAATCGAAAGTCACTGCAA+CGG + chr3_2:69574365-69574384 Msa0420810:CDS 45.0%
ATATTGCTTGCTTCGGGGAT+AGG + chr3_2:69574590-69574609 Msa0420810:CDS 45.0%
TTCTTTCCACACATCTTCCC+CGG - chr3_2:69574639-69574658 None:intergenic 45.0%
AATGAATACAAGGACGAGCC+AGG - chr3_2:69574724-69574743 None:intergenic 45.0%
! TCTCAACACTGGCACCATTT+TGG + chr3_2:69574939-69574958 Msa0420810:CDS 45.0%
! CTCAACACTGGCACCATTTT+GGG + chr3_2:69574940-69574959 Msa0420810:CDS 45.0%
!! ATGGCAGAGGTTGATAGTGA+GGG - chr3_2:69575176-69575195 None:intergenic 45.0%
!! AATGGCAGAGGTTGATAGTG+AGG - chr3_2:69575177-69575196 None:intergenic 45.0%
CTCAACAGGAGTTTGTGCAA+TGG - chr3_2:69575195-69575214 None:intergenic 45.0%
TGGATTCACTCAGACTCAAC+AGG - chr3_2:69575209-69575228 None:intergenic 45.0%
CATTGGCCGTATGTATCAGA+TGG - chr3_2:69575229-69575248 None:intergenic 45.0%
GATGGTGTAGCAGCAACAGA+GGG - chr3_2:69573128-69573147 None:intergenic 50.0%
! TGATGGTGTAGCAGCAACAG+AGG - chr3_2:69573129-69573148 None:intergenic 50.0%
CTCCACAACACTGCTGTTGT+TGG - chr3_2:69573210-69573229 None:intergenic 50.0%
CAACAACAGCAGTGTTGTGG+AGG + chr3_2:69573208-69573227 Msa0420810:CDS 50.0%
! AGCATGCTGTTACTTCCCAC+TGG + chr3_2:69573539-69573558 Msa0420810:CDS 50.0%
TATAAAGCAGGCCCCAGCAA+TGG - chr3_2:69575140-69575159 None:intergenic 50.0%
AGGAGTTTGTGCAATGGCAG+AGG - chr3_2:69575189-69575208 None:intergenic 50.0%
CAACAGCAGTGTTGTGGAGG+AGG + chr3_2:69573211-69573230 Msa0420810:CDS 55.0%
AGCAGTGTTGTGGAGGAGGA+AGG + chr3_2:69573215-69573234 Msa0420810:CDS 55.0%
TCTCTCCCCAAACCAGACAC+CGG + chr3_2:69573307-69573326 Msa0420810:CDS 55.0%
ACGAAGGGTGGCATCATGCA+CGG - chr3_2:69573887-69573906 None:intergenic 55.0%
GTTTCTTCAACAGGAGGCGG+TGG - chr3_2:69574315-69574334 None:intergenic 55.0%
GTTTAGCCGGGGAAGATGTG+TGG + chr3_2:69574630-69574649 Msa0420810:CDS 55.0%
!! AGGTTGATAGTGAGGGCCGT+AGG - chr3_2:69575169-69575188 None:intergenic 55.0%
GCAGACAGGAAGGGCCATAC+AGG - chr3_2:69574237-69574256 None:intergenic 60.0%
TCTTCAACAGGAGGCGGTGG+AGG - chr3_2:69574312-69574331 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 69572823 69575486 69572823 ID=Msa0420810;Name=Msa0420810
chr3_2 mRNA 69572823 69575486 69572823 ID=Msa0420810-mRNA-1;Parent=Msa0420810;Name=Msa0420810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146|1|1|1|1|1|6|263|327
chr3_2 exon 69572823 69573328 69572823 ID=Msa0420810-mRNA-1:exon:16530;Parent=Msa0420810-mRNA-1
chr3_2 exon 69573422 69573567 69573422 ID=Msa0420810-mRNA-1:exon:16531;Parent=Msa0420810-mRNA-1
chr3_2 exon 69574218 69574386 69574218 ID=Msa0420810-mRNA-1:exon:16532;Parent=Msa0420810-mRNA-1
chr3_2 exon 69574590 69574688 69574590 ID=Msa0420810-mRNA-1:exon:16533;Parent=Msa0420810-mRNA-1
chr3_2 exon 69574908 69574990 69574908 ID=Msa0420810-mRNA-1:exon:16534;Parent=Msa0420810-mRNA-1
chr3_2 exon 69575097 69575486 69575097 ID=Msa0420810-mRNA-1:exon:16535;Parent=Msa0420810-mRNA-1
chr3_2 five_prime_UTR 69572823 69572968 69572823 ID=Msa0420810-mRNA-1:five_prime_utr;Parent=Msa0420810-mRNA-1
chr3_2 CDS 69572969 69573328 69572969 ID=Msa0420810-mRNA-1:cds;Parent=Msa0420810-mRNA-1
chr3_2 CDS 69573422 69573567 69573422 ID=Msa0420810-mRNA-1:cds;Parent=Msa0420810-mRNA-1
chr3_2 CDS 69574218 69574386 69574218 ID=Msa0420810-mRNA-1:cds;Parent=Msa0420810-mRNA-1
chr3_2 CDS 69574590 69574688 69574590 ID=Msa0420810-mRNA-1:cds;Parent=Msa0420810-mRNA-1
chr3_2 CDS 69574908 69574990 69574908 ID=Msa0420810-mRNA-1:cds;Parent=Msa0420810-mRNA-1
chr3_2 CDS 69575097 69575223 69575097 ID=Msa0420810-mRNA-1:cds;Parent=Msa0420810-mRNA-1
chr3_2 three_prime_UTR 69575224 69575486 69575224 ID=Msa0420810-mRNA-1:three_prime_utr;Parent=Msa0420810-mRNA-1
Gene Sequence

>Msa0420810

ATGGTGCTAGTTGTAGCTAAACCCAATCTTGTAACTTGTAACTTCCCCACTCTGAAATACAAAAAATCAATTCAGAAAGCAACAATAACAGTAGTGGCCTCGGGATGTTGTTGCAGATTAAGCTCATTCACACCTCTAGTAATGAAAATGAAAGCTCCCTCTGTTGCTGCTACACCATCATTTCGGAGAAAGAGTAGTATTGTTGTTTGCAATGATTCCAACAAAGAGAGTCAAGTTACCAACAACAGCAGTGTTGTGGAGGAGGAAGGAAAAAGAGATTGGACAACTTCAATTTTACTCTTTCTCTTATGGGCTGCACTTATCTACTATGTTTCTTTTCTCTCCCCAAACCAGACACCGTCGAGGGACATGTATTTCTTGAAAAAGCTTTTGAATTTGAAAGGAGATGATGGTTTCAGAATGAATCAAGTGCTTGTTTCTGAATGGTATATTATGGGTTTGTGGCCTTTGGTATATAGCATGCTGTTACTTCCCACTGGAAGAAGCTCAAAAAGCAGTGTTCCTGTATGGCCCTTCCTGTCTGCTTCATTTTTCGGTGGCATATATGCGCTTCTTCCTTATTTTGTGCTATGGAAACCTCCACCGCCTCCTGTTGAAGAAACACAACTTAAAACATGGCCATTAAATTTTTTGGAATCGAAAGTCACTGCAACGATATTGCTTGCTTCGGGGATAGGCATCATAATTTACGCTAGTTTAGCCGGGGAAGATGTGTGGAAAGAATTTTTCCAGTACTTCAGGGAAAGCAAATTTATCCATGTTATGTCCATTGATTTTACTTTACTCTCAACACTGGCACCATTTTGGGTTTACAATGATATGACTGCTAGAAAATGGTTTGACAAAGGTTCTTGGCTTCTTCCAGTTTCATTGATACCATTGCTGGGGCCTGCTTTATACATTCTCCTACGGCCCTCACTATCAACCTCTGCCATTGCACAAACTCCTGTTGAGTCTGAGTGA

Protein sequence

>Msa0420810

MVLVVAKPNLVTCNFPTLKYKKSIQKATITVVASGCCCRLSSFTPLVMKMKAPSVAATPSFRRKSSIVVCNDSNKESQVTNNSSVVEEEGKRDWTTSILLFLLWAALIYYVSFLSPNQTPSRDMYFLKKLLNLKGDDGFRMNQVLVSEWYIMGLWPLVYSMLLLPTGRSSKSSVPVWPFLSASFFGGIYALLPYFVLWKPPPPPVEETQLKTWPLNFLESKVTATILLASGIGIIIYASLAGEDVWKEFFQYFRESKFIHVMSIDFTLLSTLAPFWVYNDMTARKWFDKGSWLLPVSLIPLLGPALYILLRPSLSTSAIAQTPVESE*