Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850690 | XP_024639431.1 | 94.817 | 328 | 16 | 1 | 1 | 328 | 1 | 327 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850690 | A0A396HXP9 | 94.817 | 328 | 16 | 1 | 1 | 328 | 1 | 327 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057840 | Msa0850690 | 0.802841 | 4.632403e-49 | -8.615850e-47 |
| Msa0077340 | Msa0850690 | 0.842285 | 2.839596e-58 | -8.615850e-47 |
| Msa0077560 | Msa0850690 | 0.854166 | 1.474683e-61 | -8.615850e-47 |
| Msa0082020 | Msa0850690 | 0.805832 | 1.103394e-49 | -8.615850e-47 |
| Msa0607800 | Msa0850690 | 0.800829 | 1.199578e-48 | -8.615850e-47 |
| Msa0621320 | Msa0850690 | 0.822932 | 1.818122e-53 | -8.615850e-47 |
| Msa0624900 | Msa0850690 | 0.800583 | 1.346519e-48 | -8.615850e-47 |
| Msa0641990 | Msa0850690 | 0.830277 | 3.215111e-55 | -8.615850e-47 |
| Msa0642550 | Msa0850690 | 0.800149 | 1.650638e-48 | -8.615850e-47 |
| Msa0681050 | Msa0850690 | 0.809043 | 2.299310e-50 | -8.615850e-47 |
| Msa0683840 | Msa0850690 | 0.804153 | 2.477038e-49 | -8.615850e-47 |
| Msa0693340 | Msa0850690 | -0.831212 | 1.897150e-55 | -8.615850e-47 |
| Msa0703950 | Msa0850690 | 0.800349 | 1.502887e-48 | -8.615850e-47 |
| Msa0709440 | Msa0850690 | 0.823036 | 1.718845e-53 | -8.615850e-47 |
| Msa0716480 | Msa0850690 | 0.802653 | 5.065872e-49 | -8.615850e-47 |
| Msa0716890 | Msa0850690 | 0.803985 | 2.683828e-49 | -8.615850e-47 |
| Msa0730930 | Msa0850690 | 0.801990 | 6.937451e-49 | -8.615850e-47 |
| Msa0745140 | Msa0850690 | 0.817112 | 3.905275e-52 | -8.615850e-47 |
| Msa0746650 | Msa0850690 | 0.816916 | 4.321750e-52 | -8.615850e-47 |
| Msa0754430 | Msa0850690 | 0.837883 | 3.996664e-57 | -8.615850e-47 |
| Msa0754450 | Msa0850690 | 0.824526 | 7.695004e-54 | -8.615850e-47 |
| Msa0776640 | Msa0850690 | 0.818825 | 1.601706e-52 | -8.615850e-47 |
| Msa0780910 | Msa0850690 | 0.809320 | 2.005383e-50 | -8.615850e-47 |
| Msa0815970 | Msa0850690 | 0.824933 | 6.171521e-54 | -8.615850e-47 |
| Msa0825920 | Msa0850690 | 0.806780 | 6.966419e-50 | -8.615850e-47 |
| Msa0837460 | Msa0850690 | 0.801731 | 7.840445e-49 | -8.615850e-47 |
| Msa0124910 | Msa0850690 | 0.829133 | 6.104684e-55 | -8.615850e-47 |
| Msa0125360 | Msa0850690 | 0.844227 | 8.614998e-59 | -8.615850e-47 |
| Msa0142430 | Msa0850690 | 0.843048 | 1.779895e-58 | -8.615850e-47 |
| Msa0172480 | Msa0850690 | 0.811089 | 8.334523e-51 | -8.615850e-47 |
| Msa0190730 | Msa0850690 | 0.834573 | 2.772031e-56 | -8.615850e-47 |
| Msa0194630 | Msa0850690 | 0.801233 | 9.915689e-49 | -8.615850e-47 |
| Msa0195230 | Msa0850690 | 0.813611 | 2.344824e-51 | -8.615850e-47 |
| Msa0195260 | Msa0850690 | 0.810577 | 1.075505e-50 | -8.615850e-47 |
| Msa0204950 | Msa0850690 | 0.841749 | 3.933862e-58 | -8.615850e-47 |
| Msa0236820 | Msa0850690 | 0.817807 | 2.722837e-52 | -8.615850e-47 |
| Msa0373500 | Msa0850690 | 0.823503 | 1.337269e-53 | -8.615850e-47 |
| Msa0377710 | Msa0850690 | 0.809534 | 1.804283e-50 | -8.615850e-47 |
| Msa0380490 | Msa0850690 | 0.847001 | 1.523543e-59 | -8.615850e-47 |
| Msa0409830 | Msa0850690 | 0.860572 | 1.880794e-63 | -8.615850e-47 |
| Msa0414880 | Msa0850690 | 0.826311 | 2.908677e-54 | -8.615850e-47 |
| Msa0430000 | Msa0850690 | 0.826724 | 2.318889e-54 | -8.615850e-47 |
| Msa0432010 | Msa0850690 | 0.816896 | 4.365591e-52 | -8.615850e-47 |
| Msa0436330 | Msa0850690 | 0.814237 | 1.706696e-51 | -8.615850e-47 |
| Msa0454560 | Msa0850690 | 0.820009 | 8.599792e-53 | -8.615850e-47 |
| Msa0468620 | Msa0850690 | 0.840348 | 9.181471e-58 | -8.615850e-47 |
| Msa0481890 | Msa0850690 | 0.822764 | 1.989109e-53 | -8.615850e-47 |
| Msa0249850 | Msa0850690 | 0.832498 | 9.134186e-56 | -8.615850e-47 |
| Msa0269210 | Msa0850690 | 0.839705 | 1.350870e-57 | -8.615850e-47 |
| Msa0281470 | Msa0850690 | 0.855143 | 7.689917e-62 | -8.615850e-47 |
| Msa0320600 | Msa0850690 | 0.843732 | 1.169570e-58 | -8.615850e-47 |
| Msa0334320 | Msa0850690 | 0.808765 | 2.636698e-50 | -8.615850e-47 |
| Msa0361910 | Msa0850690 | 0.844054 | 9.586181e-59 | -8.615850e-47 |
| Msa0500570 | Msa0850690 | 0.819132 | 1.363390e-52 | -8.615850e-47 |
| Msa0500650 | Msa0850690 | 0.833479 | 5.209451e-56 | -8.615850e-47 |
| Msa0502510 | Msa0850690 | 0.850693 | 1.439947e-60 | -8.615850e-47 |
| Msa0514500 | Msa0850690 | 0.839507 | 1.520836e-57 | -8.615850e-47 |
| Msa0529030 | Msa0850690 | 0.807886 | 4.060994e-50 | -8.615850e-47 |
| Msa0532190 | Msa0850690 | 0.800019 | 1.753690e-48 | -8.615850e-47 |
| Msa0574900 | Msa0850690 | 0.814096 | 1.833220e-51 | -8.615850e-47 |
| Msa0601720 | Msa0850690 | 0.806744 | 7.090075e-50 | -8.615850e-47 |
| Msa0850690 | Msa0865420 | 0.842113 | 3.152899e-58 | -8.615850e-47 |
| Msa0850690 | Msa0878280 | 0.811160 | 8.043206e-51 | -8.615850e-47 |
| Msa0850690 | Msa0944010 | 0.824373 | 8.358786e-54 | -8.615850e-47 |
| Msa0850690 | Msa0980290 | 0.813153 | 2.956244e-51 | -8.615850e-47 |
| Msa0850690 | Msa0982730 | 0.813744 | 2.192514e-51 | -8.615850e-47 |
| Msa0850690 | Msa1031170 | 0.800176 | 1.629861e-48 | -8.615850e-47 |
| Msa0850690 | Msa1044250 | 0.804876 | 1.750402e-49 | -8.615850e-47 |
| Msa0850690 | Msa1074900 | 0.858115 | 1.028313e-62 | -8.615850e-47 |
| Msa0850690 | Msa1078830 | 0.820955 | 5.216923e-53 | -8.615850e-47 |
| Msa0850690 | Msa1084530 | 0.816697 | 4.837895e-52 | -8.615850e-47 |
| Msa0850690 | Msa1125820 | 0.813866 | 2.060599e-51 | -8.615850e-47 |
| Msa0850690 | Msa1125990 | 0.816819 | 4.542479e-52 | -8.615850e-47 |
| Msa0850690 | Msa1162230 | 0.842239 | 2.920347e-58 | -8.615850e-47 |
| Msa0850690 | Msa1169660 | 0.853571 | 2.188214e-61 | -8.615850e-47 |
| Msa0850690 | Msa1171290 | 0.826883 | 2.124440e-54 | -8.615850e-47 |
| Msa0850690 | Msa1201170 | 0.800733 | 1.255014e-48 | -8.615850e-47 |
| Msa0850690 | Msa1207330 | 0.837688 | 4.484422e-57 | -8.615850e-47 |
| Msa0850690 | Msa1218820 | 0.817201 | 3.729003e-52 | -8.615850e-47 |
| Msa0850690 | Msa1257570 | 0.841792 | 3.832102e-58 | -8.615850e-47 |
| Msa0850690 | Msa1331300 | 0.807337 | 5.309331e-50 | -8.615850e-47 |
| Msa0850690 | Msa1347390 | 0.810621 | 1.052251e-50 | -8.615850e-47 |
| Msa0850690 | Msa1365820 | 0.816966 | 4.209869e-52 | -8.615850e-47 |
| Msa0850690 | Msa1366150 | 0.821162 | 4.674562e-53 | -8.615850e-47 |
| Msa0850690 | Msa1368390 | 0.825070 | 5.728813e-54 | -8.615850e-47 |
| Msa0850690 | Msa1368750 | 0.814543 | 1.460720e-51 | -8.615850e-47 |
| Msa0850690 | Msa1374790 | 0.809612 | 1.735850e-50 | -8.615850e-47 |
| Msa0850690 | Msa1384150 | 0.801254 | 9.818677e-49 | -8.615850e-47 |
| Msa0850690 | Msa1387440 | 0.836691 | 8.065850e-57 | -8.615850e-47 |
| Msa0850690 | Msa1391500 | 0.842337 | 2.751001e-58 | -8.615850e-47 |
| Msa0850690 | Msa1398810 | 0.848677 | 5.262684e-60 | -8.615850e-47 |
| Msa0850690 | Msa1405460 | 0.812269 | 4.615495e-51 | -8.615850e-47 |
| Msa0850690 | Msa1429070 | 0.821551 | 3.802900e-53 | -8.615850e-47 |
| Msa0850690 | Msa1451820 | 0.812359 | 4.412312e-51 | -8.615850e-47 |
| Msa0850690 | Msa1454010 | 0.801097 | 1.057285e-48 | -8.615850e-47 |
| Msa0850690 | Msa1457770 | 0.803298 | 3.727210e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850690 | MtrunA17_Chr5g0426721 | 94.817 | 328 | 16 | 1 | 1 | 328 | 1 | 327 | 0.0 | 577 |
| Msa0850690 | MtrunA17_Chr3g0132461 | 48.603 | 358 | 129 | 5 | 1 | 321 | 1 | 340 | 8.50e-76 | 236 |
| Msa0850690 | MtrunA17_Chr5g0426661 | 92.683 | 123 | 9 | 0 | 206 | 328 | 46 | 168 | 2.63e-56 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850690 | AT4G09060.1 | 45.820 | 323 | 164 | 4 | 2 | 320 | 18 | 333 | 6.04e-76 | 237 |
| Msa0850690 | AT4G09060.2 | 42.693 | 349 | 163 | 5 | 2 | 320 | 18 | 359 | 3.74e-72 | 228 |
| Msa0850690 | AT1G14680.1 | 44.262 | 305 | 144 | 6 | 1 | 301 | 1 | 283 | 1.09e-65 | 209 |
Find 81 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGAAATCGTCGATTTC+GGG | 0.204833 | 5_4:+40378511 | None:intergenic |
| TTTGATGAAATCGTCGATTT+CGG | 0.249397 | 5_4:+40378510 | None:intergenic |
| GAAGCTTGATGTCGAGGGTT+TGG | 0.291158 | 5_4:+40378449 | None:intergenic |
| CCTGAATAGTTATGCAGTTC+AGG | 0.311758 | 5_4:-40374530 | None:intergenic |
| TGTTGAGGAGAATCAGAAAT+TGG | 0.314355 | 5_4:-40378210 | Msa0850690:CDS |
| AAGCTTGATGTCGAGGGTTT+GGG | 0.319462 | 5_4:+40378450 | None:intergenic |
| AAAAGGACAAAGAGCATCTA+AGG | 0.339255 | 5_4:-40375174 | Msa0850690:CDS |
| GAGTTTGCTTGACTCTCTTT+TGG | 0.341432 | 5_4:-40376183 | Msa0850690:CDS |
| ATCTGTTGAAAATAGCATAT+TGG | 0.342998 | 5_4:-40375025 | Msa0850690:CDS |
| TGAGGAGTTGGAACGTGATT+TGG | 0.358402 | 5_4:-40378051 | Msa0850690:CDS |
| TACCTTGGCAGATGTACTAT+TGG | 0.369909 | 5_4:+40374933 | None:intergenic |
| TGATTTGGTTATGTATCAAT+TGG | 0.376004 | 5_4:-40378036 | Msa0850690:CDS |
| CCTGAACTGCATAACTATTC+AGG | 0.376796 | 5_4:+40374530 | None:intergenic |
| GTCGAGGGTTTGGGAGGAGA+TGG | 0.389737 | 5_4:+40378459 | None:intergenic |
| GTTGGAGCATTGTAGAAAAC+TGG | 0.391511 | 5_4:-40378168 | Msa0850690:CDS |
| GAAAGGAGTCATACAGAATC+TGG | 0.401903 | 5_4:-40374967 | Msa0850690:CDS |
| TACTAAGGTTGACTCTTCTT+CGG | 0.416932 | 5_4:-40376225 | Msa0850690:intron |
| CAATCCATCGACCACTCATT+AGG | 0.420092 | 5_4:-40378487 | Msa0850690:CDS |
| TGAGCTACTTATCTTCGAAC+TGG | 0.441513 | 5_4:+40374799 | None:intergenic |
| ATGAAGCTGAAGAACGAGCC+AGG | 0.443465 | 5_4:-40378091 | Msa0850690:CDS |
| ATGATACCCATTCATTCTCT+TGG | 0.443660 | 5_4:+40377997 | None:intergenic |
| CATCAAAACAGTTGTCTAGT+TGG | 0.451867 | 5_4:+40374659 | None:intergenic |
| TGAAAATAGCATATTGGAAA+AGG | 0.455763 | 5_4:-40375019 | Msa0850690:CDS |
| AGCTCGCAAACACGCCTCCC+TGG | 0.457874 | 5_4:+40378073 | None:intergenic |
| AATGTCGCCAAGAGAATGAA+TGG | 0.465264 | 5_4:-40378004 | Msa0850690:CDS |
| TCGAGGGTTTGGGAGGAGAT+GGG | 0.471014 | 5_4:+40378460 | None:intergenic |
| TCTTCTTCGGCAAGCACACA+TGG | 0.474846 | 5_4:-40376212 | Msa0850690:CDS |
| TGAATTGATGTCTCTAGAAA+AGG | 0.480662 | 5_4:-40375191 | Msa0850690:CDS |
| TTGAAATCTCACGAGCCGTT+GGG | 0.488954 | 5_4:+40378665 | None:intergenic |
| AAGTAGCTCAATGGCGAAGA+AGG | 0.490604 | 5_4:-40374786 | Msa0850690:CDS |
| GGGAAGAGACATCGTGGTGG+CGG | 0.498670 | 5_4:+40378534 | None:intergenic |
| AAAATTGAAAATTGAATCGA+TGG | 0.502602 | 5_4:+40378565 | None:intergenic |
| ATGTACAGAGTTACTTTGCA+AGG | 0.512458 | 5_4:+40374715 | None:intergenic |
| TAGTAATGAAATACAAGGAA+AGG | 0.521881 | 5_4:-40374984 | Msa0850690:CDS |
| CTGAATAGTTATGCAGTTCA+GGG | 0.528148 | 5_4:-40374529 | None:intergenic |
| ATTGAAATCTCACGAGCCGT+TGG | 0.534390 | 5_4:+40378664 | None:intergenic |
| TTGGCAGATGTACTATTGGT+AGG | 0.541731 | 5_4:+40374937 | None:intergenic |
| AGCGCGAAGCTTGATGTCGA+GGG | 0.547134 | 5_4:+40378444 | None:intergenic |
| GAATCGATGGAAGTGAGAGT+TGG | 0.547431 | 5_4:+40378578 | None:intergenic |
| ATGGAAGTGAGAGTTGGAGA+GGG | 0.549746 | 5_4:+40378584 | None:intergenic |
| CAAAACAGTTGTCTAGTTGG+AGG | 0.554242 | 5_4:+40374662 | None:intergenic |
| TAACCTCGACAGAGCTGAAG+AGG | 0.559410 | 5_4:-40375149 | Msa0850690:CDS |
| TGAAGCTGAAGAACGAGCCA+GGG | 0.559780 | 5_4:-40378090 | Msa0850690:CDS |
| GTAGCTTAAAACAATCAACT+AGG | 0.561722 | 5_4:-40375234 | Msa0850690:intron |
| AGCTGCTGTCAATGTGGAGC+GGG | 0.565123 | 5_4:-40376085 | Msa0850690:intron |
| TTCGAAGATAAGTAGCTCAA+TGG | 0.565941 | 5_4:-40374795 | Msa0850690:CDS |
| TGATGAAATCGTCGATTTCG+GGG | 0.567108 | 5_4:+40378512 | None:intergenic |
| ATGTCGCCAAGAGAATGAAT+GGG | 0.567164 | 5_4:-40378003 | Msa0850690:intron |
| GATGAAATCGTCGATTTCGG+GGG | 0.574596 | 5_4:+40378513 | None:intergenic |
| GATGGAAGTGAGAGTTGGAG+AGG | 0.575800 | 5_4:+40378583 | None:intergenic |
| CTTGATGTCGAGGGTTTGGG+AGG | 0.585010 | 5_4:+40378453 | None:intergenic |
| GGAGAATCAGAAATTGGCGG+TGG | 0.585856 | 5_4:-40378204 | Msa0850690:CDS |
| TATTGGAAAAGGAGAACAGA+AGG | 0.588297 | 5_4:-40375008 | Msa0850690:CDS |
| GGCGATAAAGAAGTTTGTTG+AGG | 0.590972 | 5_4:-40378225 | Msa0850690:CDS |
| AAGCGCGAAGCTTGATGTCG+AGG | 0.591620 | 5_4:+40378443 | None:intergenic |
| GTGTTTGCGAGCTGAGGAGT+TGG | 0.593637 | 5_4:-40378063 | Msa0850690:CDS |
| CGAACTCATCGAACAATCCA+AGG | 0.597957 | 5_4:-40378353 | Msa0850690:intron |
| CTTCTTCGGCAAGCACACAT+GGG | 0.598949 | 5_4:-40376211 | Msa0850690:CDS |
| GGAGTGAAGCGTTCTGATCG+CGG | 0.601684 | 5_4:+40378398 | None:intergenic |
| CCTCGACAGAGCTGAAGAGG+AGG | 0.608059 | 5_4:-40375146 | Msa0850690:intron |
| GCATTGTAGAAAACTGGAGA+AGG | 0.608246 | 5_4:-40378162 | Msa0850690:CDS |
| AGAGATGCGATGCGATGCGA+TGG | 0.609241 | 5_4:+40378620 | None:intergenic |
| GGAGGCGTGTTTGCGAGCTG+AGG | 0.613262 | 5_4:-40378069 | Msa0850690:CDS |
| GGAGTCATACAGAATCTGGT+AGG | 0.615558 | 5_4:-40374963 | Msa0850690:CDS |
| AAGACCTAATGAGTGGTCGA+TGG | 0.616951 | 5_4:+40378483 | None:intergenic |
| TACCAATAGTACATCTGCCA+AGG | 0.617685 | 5_4:-40374935 | Msa0850690:intron |
| CCTCCTCTTCAGCTCTGTCG+AGG | 0.622887 | 5_4:+40375146 | None:intergenic |
| TGTACAGAGTTACTTTGCAA+GGG | 0.631169 | 5_4:+40374716 | None:intergenic |
| TGAGGAGAATCAGAAATTGG+CGG | 0.631685 | 5_4:-40378207 | Msa0850690:CDS |
| AAGGGTGACAATGCTTGTCT+AGG | 0.637696 | 5_4:+40374734 | None:intergenic |
| TTCTTCGGCAAGCACACATG+GGG | 0.638857 | 5_4:-40376210 | Msa0850690:CDS |
| AAGGTTAGTAATGAAATACA+AGG | 0.646189 | 5_4:-40374989 | Msa0850690:CDS |
| GGTGGAGTGTGAGAATCTGT+TGG | 0.648638 | 5_4:-40378186 | Msa0850690:CDS |
| TGAAGCGTGTGTGAATGCGC+TGG | 0.669437 | 5_4:-40378246 | Msa0850690:CDS |
| TGGTGTCAAAAGAAACCCAA+CGG | 0.672864 | 5_4:-40378680 | None:intergenic |
| AGCTGAAGAACGAGCCAGGG+AGG | 0.676565 | 5_4:-40378087 | Msa0850690:CDS |
| AGATGGGAAGACCTAATGAG+TGG | 0.676635 | 5_4:+40378476 | None:intergenic |
| ATGAAATCGTCGATTTCGGG+GGG | 0.680612 | 5_4:+40378514 | None:intergenic |
| AGGAAGATGAATCTAGACAA+TGG | 0.688192 | 5_4:+40374682 | None:intergenic |
| AAGCTGCTGTCAATGTGGAG+CGG | 0.726336 | 5_4:-40376086 | Msa0850690:CDS |
| AAGATGAATCTAGACAATGG+TGG | 0.735233 | 5_4:+40374685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAAAAATATAGTAA+AGG | + | chr5_4:40375813-40375832 | None:intergenic | 10.0% |
| !!! | AAACTTTTTTCAAAAAATAA+AGG | + | chr5_4:40376337-40376356 | None:intergenic | 10.0% |
| !!! | ATATTTACTTTATTTTACTA+AGG | - | chr5_4:40376967-40376986 | Msa0850690:intron | 10.0% |
| !!! | TTATTTTCTTTTTTGGTTTT+TGG | - | chr5_4:40374932-40374951 | Msa0850690:intron | 15.0% |
| !! | TAAAATCTAATAATACTTGT+AGG | - | chr5_4:40376155-40376174 | Msa0850690:CDS | 15.0% |
| !! | AAAAGAATAATGTCAAAATA+AGG | + | chr5_4:40377221-40377240 | None:intergenic | 15.0% |
| !!! | GTTTTTTCTATTATAGAAAT+AGG | + | chr5_4:40377517-40377536 | None:intergenic | 15.0% |
| !! | ATGCAGATTAATTATTTAAA+AGG | + | chr5_4:40378365-40378384 | None:intergenic | 15.0% |
| !! | AAAATTGAAAATTGAATCGA+TGG | + | chr5_4:40374645-40374664 | None:intergenic | 20.0% |
| !!! | CTTTTTCTTTAAGTTTTTGA+AGG | + | chr5_4:40374833-40374852 | None:intergenic | 20.0% |
| !!! | ATTTTGAGATATTAATTCGT+TGG | - | chr5_4:40375274-40375293 | Msa0850690:intron | 20.0% |
| !! | GGATATTAGAAATTTCAAAA+TGG | - | chr5_4:40375774-40375793 | Msa0850690:intron | 20.0% |
| !! | CAAAAAAAATATAGTAAAGG+AGG | + | chr5_4:40375810-40375829 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTTTCCCATAT+TGG | - | chr5_4:40375821-40375840 | Msa0850690:intron | 20.0% |
| !!! | TTTTTTTGTTTTCCCATATT+GGG | - | chr5_4:40375822-40375841 | Msa0850690:intron | 20.0% |
| !! | TTAGTAAGAAATTTGGTTAA+TGG | - | chr5_4:40376055-40376074 | Msa0850690:intron | 20.0% |
| !!! | AGTATTTGGAATTTCATTTT+TGG | - | chr5_4:40376389-40376408 | Msa0850690:intron | 20.0% |
| !! | GACAAAATAATGTCAAAATA+AGG | + | chr5_4:40377192-40377211 | None:intergenic | 20.0% |
| !!! | TTTCCAGTTTTTGAATTATA+TGG | - | chr5_4:40378117-40378136 | Msa0850690:CDS | 20.0% |
| !! | ATTCCATATAATTCAAAAAC+TGG | + | chr5_4:40378123-40378142 | None:intergenic | 20.0% |
| !! | CAGATTAATTATTTAAAAGG+AGG | + | chr5_4:40378362-40378381 | None:intergenic | 20.0% |
| ! | AAATGATTGAAAAGAAACCT+TGG | + | chr5_4:40374874-40374893 | None:intergenic | 25.0% |
| !!! | TGATTTGGTTATGTATCAAT+TGG | - | chr5_4:40375171-40375190 | Msa0850690:CDS | 25.0% |
| ! | AGTTTCAAAACAAGTTGTTT+AGG | - | chr5_4:40375674-40375693 | Msa0850690:intron | 25.0% |
| ! | GTTTCAAAACAAGTTGTTTA+GGG | - | chr5_4:40375675-40375694 | Msa0850690:intron | 25.0% |
| !! | TTGTTTAGGGTTATTTCATT+TGG | - | chr5_4:40375688-40375707 | Msa0850690:intron | 25.0% |
| !! | TGTTTAGGGTTATTTCATTT+GGG | - | chr5_4:40375689-40375708 | Msa0850690:intron | 25.0% |
| ! | ATTTCTAATATCCCAAACAA+GGG | + | chr5_4:40375767-40375786 | None:intergenic | 25.0% |
| ! | AATTTCTAATATCCCAAACA+AGG | + | chr5_4:40375768-40375787 | None:intergenic | 25.0% |
| !! | AATATAGTAAAGGAGGTTTT+GGG | + | chr5_4:40375803-40375822 | None:intergenic | 25.0% |
| !! | AAATATAGTAAAGGAGGTTT+TGG | + | chr5_4:40375804-40375823 | None:intergenic | 25.0% |
| ! | ATGTAAAGAAAAAGAAGGAA+GGG | + | chr5_4:40375880-40375899 | None:intergenic | 25.0% |
| ! | ATTTAATTCAAAACAACCTG+CGG | - | chr5_4:40375943-40375962 | Msa0850690:intron | 25.0% |
| ! | GGATTGATTAGTAAGAAATT+TGG | - | chr5_4:40376048-40376067 | Msa0850690:intron | 25.0% |
| !!! | TAGTTTTAGTGAAAGAATGT+TGG | - | chr5_4:40376210-40376229 | Msa0850690:CDS | 25.0% |
| !! | GAATTTTTCCTCTTAATTGA+CGG | - | chr5_4:40376308-40376327 | Msa0850690:intron | 25.0% |
| ! | AAATTCCAAATACTCAATGA+TGG | + | chr5_4:40376383-40376402 | None:intergenic | 25.0% |
| !! | TTTTACTTGAAAGTCATATG+AGG | - | chr5_4:40376423-40376442 | Msa0850690:intron | 25.0% |
| ! | ATGTTAATTAAGCAGTATGT+TGG | + | chr5_4:40376708-40376727 | None:intergenic | 25.0% |
| ! | AATTAGATTAAGCAGTATGT+TGG | + | chr5_4:40376731-40376750 | None:intergenic | 25.0% |
| ! | TTTCACTAGAGTTAATCATT+TGG | - | chr5_4:40376925-40376944 | Msa0850690:intron | 25.0% |
| !! | GTCTTCTACATATGAATTTT+TGG | - | chr5_4:40377069-40377088 | Msa0850690:intron | 25.0% |
| ! | GCATCAGAGATAAAAAAAAT+TGG | + | chr5_4:40377246-40377265 | None:intergenic | 25.0% |
| ! | TAACCAATGTTGTAAAATTG+TGG | - | chr5_4:40377281-40377300 | Msa0850690:intron | 25.0% |
| ! | AATAATTCATTATGCCCTTT+AGG | + | chr5_4:40377578-40377597 | None:intergenic | 25.0% |
| ! | ATTGAAAGATTTACGTACTA+TGG | + | chr5_4:40377603-40377622 | None:intergenic | 25.0% |
| ! | TGATGCATACAAATACAAAA+GGG | + | chr5_4:40377651-40377670 | None:intergenic | 25.0% |
| ! | ATGATGCATACAAATACAAA+AGG | + | chr5_4:40377652-40377671 | None:intergenic | 25.0% |
| ! | CAAAATCCAAATGATAATCA+GGG | + | chr5_4:40377954-40377973 | None:intergenic | 25.0% |
| ! | ACAAAATCCAAATGATAATC+AGG | + | chr5_4:40377955-40377974 | None:intergenic | 25.0% |
| ! | AAAAAGTCAACAATATAAGG+AGG | + | chr5_4:40378100-40378119 | None:intergenic | 25.0% |
| ! | TGGAAAAAGTCAACAATATA+AGG | + | chr5_4:40378103-40378122 | None:intergenic | 25.0% |
| ! | ATCTGTTGAAAATAGCATAT+TGG | - | chr5_4:40378182-40378201 | Msa0850690:CDS | 25.0% |
| ! | TGAAAATAGCATATTGGAAA+AGG | - | chr5_4:40378188-40378207 | Msa0850690:CDS | 25.0% |
| ! | AAGGTTAGTAATGAAATACA+AGG | - | chr5_4:40378218-40378237 | Msa0850690:CDS | 25.0% |
| ! | TAGTAATGAAATACAAGGAA+AGG | - | chr5_4:40378223-40378242 | Msa0850690:CDS | 25.0% |
| !!! | TATTTTTCATTTGCTGAAGT+TGG | - | chr5_4:40378612-40378631 | Msa0850690:five_prime_UTR | 25.0% |
| ! | TTAAAACCATGAAAAAACAG+TGG | - | chr5_4:40378644-40378663 | Msa0850690:five_prime_UTR | 25.0% |
| ! | TAAAACCATGAAAAAACAGT+GGG | - | chr5_4:40378645-40378664 | Msa0850690:five_prime_UTR | 25.0% |
| !! | TTTGATGAAATCGTCGATTT+CGG | + | chr5_4:40374700-40374719 | None:intergenic | 30.0% |
| !! | TTATGTGTGTTGCTTTCTTA+GGG | - | chr5_4:40375327-40375346 | Msa0850690:intron | 30.0% |
| TGAATACATACCGTAATCAT+TGG | - | chr5_4:40375405-40375424 | Msa0850690:intron | 30.0% | |
| TTGAACGTATCCAATGATTA+CGG | + | chr5_4:40375418-40375437 | None:intergenic | 30.0% | |
| AATTGAATGTAATCACGTGT+TGG | + | chr5_4:40375504-40375523 | None:intergenic | 30.0% | |
| !!! | TTTGGGATATTGTTTTAGTG+AGG | - | chr5_4:40375706-40375725 | Msa0850690:intron | 30.0% |
| !!! | ATATTGTTTTAGTGAGGACA+AGG | - | chr5_4:40375712-40375731 | Msa0850690:intron | 30.0% |
| ATATCGAAAACTCCCAATAT+GGG | + | chr5_4:40375837-40375856 | None:intergenic | 30.0% | |
| AATATCGAAAACTCCCAATA+TGG | + | chr5_4:40375838-40375857 | None:intergenic | 30.0% | |
| ! | GAGTTTTCGATATTCAATCA+TGG | - | chr5_4:40375844-40375863 | Msa0850690:intron | 30.0% |
| ! | TTTTCGATATTCAATCATGG+TGG | - | chr5_4:40375847-40375866 | Msa0850690:intron | 30.0% |
| TTTCGATATTCAATCATGGT+GGG | - | chr5_4:40375848-40375867 | Msa0850690:intron | 30.0% | |
| GATGTAAAGAAAAAGAAGGA+AGG | + | chr5_4:40375881-40375900 | None:intergenic | 30.0% | |
| GAAGGATGTAAAGAAAAAGA+AGG | + | chr5_4:40375885-40375904 | None:intergenic | 30.0% | |
| TCAATCCATATCATCTCTTA+CGG | + | chr5_4:40376035-40376054 | None:intergenic | 30.0% | |
| !! | CTTTTGACTGAGTAATTACT+GGG | - | chr5_4:40376083-40376102 | Msa0850690:intron | 30.0% |
| TCTTTCACTAAAACTAAGCA+TGG | + | chr5_4:40376206-40376225 | None:intergenic | 30.0% | |
| ! | CAGATAAGTTCTGACATAAT+AGG | - | chr5_4:40376242-40376261 | Msa0850690:intron | 30.0% |
| !! | TTTTGATAGTACATTCACTC+AGG | - | chr5_4:40376546-40376565 | Msa0850690:intron | 30.0% |
| CCAAATCCAAATTCAAATGA+GGG | + | chr5_4:40376624-40376643 | None:intergenic | 30.0% | |
| CAATGTCTCAAGATACTAAT+GGG | + | chr5_4:40376760-40376779 | None:intergenic | 30.0% | |
| TCAATGTCTCAAGATACTAA+TGG | + | chr5_4:40376761-40376780 | None:intergenic | 30.0% | |
| TGGACTACTACTACTATAAT+AGG | - | chr5_4:40376836-40376855 | Msa0850690:intron | 30.0% | |
| ATTTCGAGATTAGAGAGAAA+GGG | + | chr5_4:40376892-40376911 | None:intergenic | 30.0% | |
| TATTTCGAGATTAGAGAGAA+AGG | + | chr5_4:40376893-40376912 | None:intergenic | 30.0% | |
| TTCTCTCTAATCTCGAAATA+TGG | - | chr5_4:40376893-40376912 | Msa0850690:intron | 30.0% | |
| ATATCAGTAGCTAACATTCA+TGG | + | chr5_4:40376951-40376970 | None:intergenic | 30.0% | |
| ! | TTGGTTAATTGTCTAGAACA+TGG | + | chr5_4:40377268-40377287 | None:intergenic | 30.0% |
| ! | TCACCACAATTTTACAACAT+TGG | + | chr5_4:40377287-40377306 | None:intergenic | 30.0% |
| TTGTAAAATTGTGGTGATAG+CGG | - | chr5_4:40377290-40377309 | Msa0850690:intron | 30.0% | |
| ATTTCCCTAATAGAGAAACT+AGG | + | chr5_4:40377376-40377395 | None:intergenic | 30.0% | |
| TTTCTCTATTAGGGAAATAG+CGG | - | chr5_4:40377378-40377397 | Msa0850690:intron | 30.0% | |
| CATACAAATACAAAAGGGAA+TGG | + | chr5_4:40377646-40377665 | None:intergenic | 30.0% | |
| !!! | TAAATCACCTAGTGGATTTT+AGG | - | chr5_4:40377838-40377857 | Msa0850690:intron | 30.0% |
| TAGCATATTGTGGAAAATAG+CGG | + | chr5_4:40377868-40377887 | None:intergenic | 30.0% | |
| GTGTTATCAATAGCATATTG+TGG | + | chr5_4:40377878-40377897 | None:intergenic | 30.0% | |
| TTACAACCCTGATTATCATT+TGG | - | chr5_4:40377945-40377964 | Msa0850690:intron | 30.0% | |
| GTAGCTTAAAACAATCAACT+AGG | - | chr5_4:40377973-40377992 | Msa0850690:intron | 30.0% | |
| ! | TGAATTGATGTCTCTAGAAA+AGG | - | chr5_4:40378016-40378035 | Msa0850690:CDS | 30.0% |
| ! | ACAGATAATAATTTGCCCTA+TGG | + | chr5_4:40378168-40378187 | None:intergenic | 30.0% |
| !! | TTGATGAAATCGTCGATTTC+GGG | + | chr5_4:40374699-40374718 | None:intergenic | 35.0% |
| TGTTGAGGAGAATCAGAAAT+TGG | - | chr5_4:40374997-40375016 | Msa0850690:CDS | 35.0% | |
| ATGATACCCATTCATTCTCT+TGG | + | chr5_4:40375213-40375232 | None:intergenic | 35.0% | |
| !! | TTGGTTGTGTTGCTTGATTA+GGG | - | chr5_4:40375293-40375312 | Msa0850690:intron | 35.0% |
| !! | GTTATGTGTGTTGCTTTCTT+AGG | - | chr5_4:40375326-40375345 | Msa0850690:intron | 35.0% |
| TGTATCTCACACAAAAGACA+GGG | + | chr5_4:40375591-40375610 | None:intergenic | 35.0% | |
| TTGTATCTCACACAAAAGAC+AGG | + | chr5_4:40375592-40375611 | None:intergenic | 35.0% | |
| ! | TTTTAGTGAGGACAAGGAAA+GGG | - | chr5_4:40375718-40375737 | Msa0850690:intron | 35.0% |
| TTATCAAACCTTCCCTTGTT+TGG | - | chr5_4:40375752-40375771 | Msa0850690:intron | 35.0% | |
| ! | TATCAAACCTTCCCTTGTTT+GGG | - | chr5_4:40375753-40375772 | Msa0850690:intron | 35.0% |
| ATTGTTTGGAAGTTGAGTGA+AGG | + | chr5_4:40375903-40375922 | None:intergenic | 35.0% | |
| AACTTCCAAACAATGCCTTA+AGG | - | chr5_4:40375909-40375928 | Msa0850690:intron | 35.0% | |
| CAAACAATGCCTTAAGGAAT+GGG | - | chr5_4:40375915-40375934 | Msa0850690:intron | 35.0% | |
| AAATACGATCCCATTCCTTA+AGG | + | chr5_4:40375927-40375946 | None:intergenic | 35.0% | |
| !! | GCTTTTGACTGAGTAATTAC+TGG | - | chr5_4:40376082-40376101 | Msa0850690:intron | 35.0% |
| !! | TAAGCATGGTGTCGTTATTA+GGG | + | chr5_4:40376192-40376211 | None:intergenic | 35.0% |
| AATAGGATTCAAACCAGACA+CGG | - | chr5_4:40376259-40376278 | Msa0850690:intron | 35.0% | |
| AAATTCTGTTACCACAGGTA+AGG | + | chr5_4:40376294-40376313 | None:intergenic | 35.0% | |
| AGGAAAAATTCTGTTACCAC+AGG | + | chr5_4:40376299-40376318 | None:intergenic | 35.0% | |
| TGCTTACCCTCATTTGAATT+TGG | - | chr5_4:40376615-40376634 | Msa0850690:intron | 35.0% | |
| CCCTCATTTGAATTTGGATT+TGG | - | chr5_4:40376621-40376640 | Msa0850690:intron | 35.0% | |
| GCCAAATCCAAATTCAAATG+AGG | + | chr5_4:40376625-40376644 | None:intergenic | 35.0% | |
| TGTTAGATGAAATGCATTGC+AGG | + | chr5_4:40376684-40376703 | None:intergenic | 35.0% | |
| AACTTAGCAGTACCACAATT+TGG | + | chr5_4:40376805-40376824 | None:intergenic | 35.0% | |
| TAGTAGTAGTAGTCCAAGTT+GGG | + | chr5_4:40376832-40376851 | None:intergenic | 35.0% | |
| ATAGTAGTAGTAGTCCAAGT+TGG | + | chr5_4:40376833-40376852 | None:intergenic | 35.0% | |
| TCTAATCTCGAAATATGGCT+AGG | - | chr5_4:40376898-40376917 | Msa0850690:intron | 35.0% | |
| ! | TACTAAGGTTGACTCTTCTT+CGG | - | chr5_4:40376982-40377001 | Msa0850690:intron | 35.0% |
| AAACTTGACAAGAGAGTAAG+AGG | + | chr5_4:40377169-40377188 | None:intergenic | 35.0% | |
| AGCGGAAAAATGAGAATCTT+AGG | - | chr5_4:40377439-40377458 | Msa0850690:intron | 35.0% | |
| ACAAATACAAAAGGGAATGG+AGG | + | chr5_4:40377643-40377662 | None:intergenic | 35.0% | |
| AAATCCACTAGGTGATTTAG+TGG | + | chr5_4:40377837-40377856 | None:intergenic | 35.0% | |
| GCAGTAAACATGTAACAATC+AGG | - | chr5_4:40377899-40377918 | Msa0850690:intron | 35.0% | |
| !! | AAAAGGACAAAGAGCATCTA+AGG | - | chr5_4:40378033-40378052 | Msa0850690:CDS | 35.0% |
| !! | TTAGCTTGGTGTAAACCATA+GGG | - | chr5_4:40378150-40378169 | Msa0850690:CDS | 35.0% |
| TATTGGAAAAGGAGAACAGA+AGG | - | chr5_4:40378199-40378218 | Msa0850690:CDS | 35.0% | |
| TTCGAAGATAAGTAGCTCAA+TGG | - | chr5_4:40378412-40378431 | Msa0850690:CDS | 35.0% | |
| ! | TGTACAGAGTTACTTTGCAA+GGG | + | chr5_4:40378494-40378513 | None:intergenic | 35.0% |
| ! | ATGTACAGAGTTACTTTGCA+AGG | + | chr5_4:40378495-40378514 | None:intergenic | 35.0% |
| AAGATGAATCTAGACAATGG+TGG | + | chr5_4:40378525-40378544 | None:intergenic | 35.0% | |
| AGGAAGATGAATCTAGACAA+TGG | + | chr5_4:40378528-40378547 | None:intergenic | 35.0% | |
| CATCAAAACAGTTGTCTAGT+TGG | + | chr5_4:40378551-40378570 | None:intergenic | 35.0% | |
| !!! | TAACACCCACTGTTTTTTCA+TGG | + | chr5_4:40378653-40378672 | None:intergenic | 35.0% |
| !! | TGATGAAATCGTCGATTTCG+GGG | + | chr5_4:40374698-40374717 | None:intergenic | 40.0% |
| !! | GGCGATAAAGAAGTTTGTTG+AGG | - | chr5_4:40374982-40375001 | Msa0850690:CDS | 40.0% |
| TGAGGAGAATCAGAAATTGG+CGG | - | chr5_4:40375000-40375019 | Msa0850690:CDS | 40.0% | |
| !! | GTTGGAGCATTGTAGAAAAC+TGG | - | chr5_4:40375039-40375058 | Msa0850690:CDS | 40.0% |
| GCATTGTAGAAAACTGGAGA+AGG | - | chr5_4:40375045-40375064 | Msa0850690:intron | 40.0% | |
| AATGTCGCCAAGAGAATGAA+TGG | - | chr5_4:40375203-40375222 | Msa0850690:CDS | 40.0% | |
| ATGTCGCCAAGAGAATGAAT+GGG | - | chr5_4:40375204-40375223 | Msa0850690:CDS | 40.0% | |
| !! | GTTGGTTGTGTTGCTTGATT+AGG | - | chr5_4:40375292-40375311 | Msa0850690:intron | 40.0% |
| !! | TGTGTTGCTTGATTAGGGAA+TGG | - | chr5_4:40375298-40375317 | Msa0850690:intron | 40.0% |
| ACACTGACACTTCTAATCGA+AGG | - | chr5_4:40375461-40375480 | Msa0850690:intron | 40.0% | |
| !! | GTTTTAGTGAGGACAAGGAA+AGG | - | chr5_4:40375717-40375736 | Msa0850690:intron | 40.0% |
| CTAATATCCCAAACAAGGGA+AGG | + | chr5_4:40375763-40375782 | None:intergenic | 40.0% | |
| !! | CCATTCCTTAAGGCATTGTT+TGG | + | chr5_4:40375917-40375936 | None:intergenic | 40.0% |
| CCAAACAATGCCTTAAGGAA+TGG | - | chr5_4:40375914-40375933 | Msa0850690:intron | 40.0% | |
| TAATTCAAAACAACCTGCGG+AGG | - | chr5_4:40375946-40375965 | Msa0850690:intron | 40.0% | |
| TGACTGAGTAATTACTGGGA+TGG | - | chr5_4:40376087-40376106 | Msa0850690:CDS | 40.0% | |
| CAAACCACTGTATAGCATCA+GGG | + | chr5_4:40376118-40376137 | None:intergenic | 40.0% | |
| CTGATGCTATACAGTGGTTT+GGG | - | chr5_4:40376117-40376136 | Msa0850690:CDS | 40.0% | |
| !! | CTAAGCATGGTGTCGTTATT+AGG | + | chr5_4:40376193-40376212 | None:intergenic | 40.0% |
| AAAGGACACCGTCAATTAAG+AGG | + | chr5_4:40376319-40376338 | None:intergenic | 40.0% | |
| ! | CAAATACTCAATGATGGAGC+TGG | + | chr5_4:40376377-40376396 | None:intergenic | 40.0% |
| CAGCTCCATCATTGAGTATT+TGG | - | chr5_4:40376375-40376394 | Msa0850690:intron | 40.0% | |
| GAGAAATCCAACAATAGCTC+AGG | + | chr5_4:40376455-40376474 | None:intergenic | 40.0% | |
| TGCTACATACTGCCAAATTG+TGG | - | chr5_4:40376790-40376809 | Msa0850690:intron | 40.0% | |
| TGCTAAGTTATGACCCAACT+TGG | - | chr5_4:40376816-40376835 | Msa0850690:intron | 40.0% | |
| AATCTCGAAATATGGCTAGG+TGG | - | chr5_4:40376901-40376920 | Msa0850690:intron | 40.0% | |
| !! | GAGTTTGCTTGACTCTCTTT+TGG | - | chr5_4:40377024-40377043 | Msa0850690:intron | 40.0% |
| GTAAAAAGCTGCTGTCAATG+TGG | - | chr5_4:40377116-40377135 | Msa0850690:intron | 40.0% | |
| ACTATGGCGCTATAATCTAG+TGG | - | chr5_4:40377314-40377333 | Msa0850690:intron | 40.0% | |
| ACCGTCCTAGTTTCTCTATT+AGG | - | chr5_4:40377368-40377387 | Msa0850690:intron | 40.0% | |
| CCCTAATAGAGAAACTAGGA+CGG | + | chr5_4:40377372-40377391 | None:intergenic | 40.0% | |
| CCGTCCTAGTTTCTCTATTA+GGG | - | chr5_4:40377369-40377388 | Msa0850690:intron | 40.0% | |
| ATCGAGTATTACTCACCTGA+CGG | - | chr5_4:40377546-40377565 | Msa0850690:intron | 40.0% | |
| CTATCCACTAAATCACCTAG+TGG | - | chr5_4:40377830-40377849 | Msa0850690:intron | 40.0% | |
| ! | ATGGAATGACTGACTTAGCT+TGG | - | chr5_4:40378136-40378155 | Msa0850690:CDS | 40.0% |
| !! | CTTAGCTTGGTGTAAACCAT+AGG | - | chr5_4:40378149-40378168 | Msa0850690:CDS | 40.0% |
| GAAAGGAGTCATACAGAATC+TGG | - | chr5_4:40378240-40378259 | Msa0850690:CDS | 40.0% | |
| TTGGCAGATGTACTATTGGT+AGG | + | chr5_4:40378273-40378292 | None:intergenic | 40.0% | |
| TACCAATAGTACATCTGCCA+AGG | - | chr5_4:40378272-40378291 | Msa0850690:intron | 40.0% | |
| TACCTTGGCAGATGTACTAT+TGG | + | chr5_4:40378277-40378296 | None:intergenic | 40.0% | |
| TCTGCCAAGGTAAGAATCAT+AGG | - | chr5_4:40378285-40378304 | Msa0850690:intron | 40.0% | |
| CTGCCAAGGTAAGAATCATA+GGG | - | chr5_4:40378286-40378305 | Msa0850690:intron | 40.0% | |
| TGCCAAGGTAAGAATCATAG+GGG | - | chr5_4:40378287-40378306 | Msa0850690:intron | 40.0% | |
| TGAGCTACTTATCTTCGAAC+TGG | + | chr5_4:40378411-40378430 | None:intergenic | 40.0% | |
| CAAAACAGTTGTCTAGTTGG+AGG | + | chr5_4:40378548-40378567 | None:intergenic | 40.0% | |
| TTGAAATCTCACGAGCCGTT+GGG | + | chr5_4:40374545-40374564 | None:intergenic | 45.0% | |
| ATTGAAATCTCACGAGCCGT+TGG | + | chr5_4:40374546-40374565 | None:intergenic | 45.0% | |
| ATGGAAGTGAGAGTTGGAGA+GGG | + | chr5_4:40374626-40374645 | None:intergenic | 45.0% | |
| GAATCGATGGAAGTGAGAGT+TGG | + | chr5_4:40374632-40374651 | None:intergenic | 45.0% | |
| !! | ATGAAATCGTCGATTTCGGG+GGG | + | chr5_4:40374696-40374715 | None:intergenic | 45.0% |
| !! | GATGAAATCGTCGATTTCGG+GGG | + | chr5_4:40374697-40374716 | None:intergenic | 45.0% |
| CAATCCATCGACCACTCATT+AGG | - | chr5_4:40374720-40374739 | Msa0850690:CDS | 45.0% | |
| AAGACCTAATGAGTGGTCGA+TGG | + | chr5_4:40374727-40374746 | None:intergenic | 45.0% | |
| AGATGGGAAGACCTAATGAG+TGG | + | chr5_4:40374734-40374753 | None:intergenic | 45.0% | |
| AAGCTTGATGTCGAGGGTTT+GGG | + | chr5_4:40374760-40374779 | None:intergenic | 45.0% | |
| ! | CTGATCGCGGAGATTTTGTT+CGG | + | chr5_4:40374799-40374818 | None:intergenic | 45.0% |
| CGAACTCATCGAACAATCCA+AGG | - | chr5_4:40374854-40374873 | Msa0850690:intron | 45.0% | |
| TGAGGAGTTGGAACGTGATT+TGG | - | chr5_4:40375156-40375175 | Msa0850690:CDS | 45.0% | |
| TGAGGACAAGGAAAGGGAAA+GGG | - | chr5_4:40375724-40375743 | Msa0850690:intron | 45.0% | |
| GAGAGCCGTAAGAGATGATA+TGG | - | chr5_4:40376027-40376046 | Msa0850690:intron | 45.0% | |
| TACACCCTGATGCTATACAG+TGG | - | chr5_4:40376111-40376130 | Msa0850690:CDS | 45.0% | |
| CCAAACCACTGTATAGCATC+AGG | + | chr5_4:40376119-40376138 | None:intergenic | 45.0% | |
| CCTGATGCTATACAGTGGTT+TGG | - | chr5_4:40376116-40376135 | Msa0850690:CDS | 45.0% | |
| AAGGATTTCTGAACCGTGTC+TGG | + | chr5_4:40376275-40376294 | None:intergenic | 45.0% | |
| GGTTCAGAAATCCTTACCTG+TGG | - | chr5_4:40376280-40376299 | Msa0850690:intron | 45.0% | |
| TCGAGTATTACTCACCTGAC+GGG | - | chr5_4:40377547-40377566 | Msa0850690:intron | 45.0% | |
| TGGATAGCGTTGCAGGAAAA+TGG | + | chr5_4:40377817-40377836 | None:intergenic | 45.0% | |
| ! | GATTTAGTGGATAGCGTTGC+AGG | + | chr5_4:40377824-40377843 | None:intergenic | 45.0% |
| CGGAATGCCTAAAATCCACT+AGG | + | chr5_4:40377848-40377867 | None:intergenic | 45.0% | |
| GGAGTCATACAGAATCTGGT+AGG | - | chr5_4:40378244-40378263 | Msa0850690:CDS | 45.0% | |
| CACCCCTATGATTCTTACCT+TGG | + | chr5_4:40378292-40378311 | None:intergenic | 45.0% | |
| AAGTAGCTCAATGGCGAAGA+AGG | - | chr5_4:40378421-40378440 | Msa0850690:CDS | 45.0% | |
| AAGGGTGACAATGCTTGTCT+AGG | + | chr5_4:40378476-40378495 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTATTTTCTTTTT+TGG | - | chr5_4:40374925-40374944 | Msa0850690:intron | 5.0% |
| !!! | TAATTTTCTTAAATTATTAT+TGG | - | chr5_4:40375527-40375546 | Msa0850690:intron | 5.0% |
| GATGGAAGTGAGAGTTGGAG+AGG | + | chr5_4:40374627-40374646 | None:intergenic | 50.0% | |
| GAAGCTTGATGTCGAGGGTT+TGG | + | chr5_4:40374761-40374780 | None:intergenic | 50.0% | |
| GGAGAATCAGAAATTGGCGG+TGG | - | chr5_4:40375003-40375022 | Msa0850690:CDS | 50.0% | |
| GGTGGAGTGTGAGAATCTGT+TGG | - | chr5_4:40375021-40375040 | Msa0850690:CDS | 50.0% | |
| ATGAAGCTGAAGAACGAGCC+AGG | - | chr5_4:40375116-40375135 | Msa0850690:intron | 50.0% | |
| TGAAGCTGAAGAACGAGCCA+GGG | - | chr5_4:40375117-40375136 | Msa0850690:intron | 50.0% | |
| !! | TGGTGTTGACGTGTCTGTGT+CGG | - | chr5_4:40375547-40375566 | Msa0850690:intron | 50.0% |
| GTGAGGACAAGGAAAGGGAA+AGG | - | chr5_4:40375723-40375742 | Msa0850690:intron | 50.0% | |
| TCACACACACACACAGAGAG+GGG | + | chr5_4:40375983-40376002 | None:intergenic | 50.0% | |
| CTCACACACACACACAGAGA+GGG | + | chr5_4:40375984-40376003 | None:intergenic | 50.0% | |
| TCTCACACACACACACAGAG+AGG | + | chr5_4:40375985-40376004 | None:intergenic | 50.0% | |
| AGCTGGACTTCGAAGTCTTG+GGG | + | chr5_4:40376360-40376379 | None:intergenic | 50.0% | |
| GAGCTGGACTTCGAAGTCTT+GGG | + | chr5_4:40376361-40376380 | None:intergenic | 50.0% | |
| GCGTCTTCCTGAGCTATTGT+TGG | - | chr5_4:40376445-40376464 | Msa0850690:intron | 50.0% | |
| TCTTCTTCGGCAAGCACACA+TGG | - | chr5_4:40376995-40377014 | Msa0850690:intron | 50.0% | |
| CTTCTTCGGCAAGCACACAT+GGG | - | chr5_4:40376996-40377015 | Msa0850690:intron | 50.0% | |
| TTCTTCGGCAAGCACACATG+GGG | - | chr5_4:40376997-40377016 | Msa0850690:intron | 50.0% | |
| AAGCTGCTGTCAATGTGGAG+CGG | - | chr5_4:40377121-40377140 | Msa0850690:intron | 50.0% | |
| !! | TTGTGGTGATAGCGGCACTA+TGG | - | chr5_4:40377298-40377317 | Msa0850690:intron | 50.0% |
| !! | ACCTGACGGGCTATTCCTAA+AGG | - | chr5_4:40377560-40377579 | Msa0850690:intron | 50.0% |
| !! | CCTGACGGGCTATTCCTAAA+GGG | - | chr5_4:40377561-40377580 | Msa0850690:intron | 50.0% |
| TAACCTCGACAGAGCTGAAG+AGG | - | chr5_4:40378058-40378077 | Msa0850690:CDS | 50.0% | |
| AGAGATGCGATGCGATGCGA+TGG | + | chr5_4:40374590-40374609 | None:intergenic | 55.0% | |
| TCGAGGGTTTGGGAGGAGAT+GGG | + | chr5_4:40374750-40374769 | None:intergenic | 55.0% | |
| CTTGATGTCGAGGGTTTGGG+AGG | + | chr5_4:40374757-40374776 | None:intergenic | 55.0% | |
| AGCGCGAAGCTTGATGTCGA+GGG | + | chr5_4:40374766-40374785 | None:intergenic | 55.0% | |
| AAGCGCGAAGCTTGATGTCG+AGG | + | chr5_4:40374767-40374786 | None:intergenic | 55.0% | |
| ! | GGAGTGAAGCGTTCTGATCG+CGG | + | chr5_4:40374812-40374831 | None:intergenic | 55.0% |
| TGAAGCGTGTGTGAATGCGC+TGG | - | chr5_4:40374961-40374980 | Msa0850690:CDS | 55.0% | |
| GTGTTTGCGAGCTGAGGAGT+TGG | - | chr5_4:40375144-40375163 | Msa0850690:intron | 55.0% | |
| ACACACACACACAGAGAGGG+GGG | + | chr5_4:40375981-40376000 | None:intergenic | 55.0% | |
| CACACACACACACAGAGAGG+GGG | + | chr5_4:40375982-40376001 | None:intergenic | 55.0% | |
| GGAGCTGGACTTCGAAGTCT+TGG | + | chr5_4:40376362-40376381 | None:intergenic | 55.0% | |
| AGCTGCTGTCAATGTGGAGC+GGG | - | chr5_4:40377122-40377141 | Msa0850690:intron | 55.0% | |
| ! | GAGAAACTAGGACGGTGTCG+TGG | + | chr5_4:40377364-40377383 | None:intergenic | 55.0% |
| GGCTGATGTAGCGACAGTAG+CGG | - | chr5_4:40377421-40377440 | Msa0850690:intron | 55.0% | |
| ! | CCCTTTAGGAATAGCCCGTC+AGG | + | chr5_4:40377564-40377583 | None:intergenic | 55.0% |
| ACAGAGCTGAAGAGGAGGTG+AGG | - | chr5_4:40378066-40378085 | Msa0850690:CDS | 55.0% | |
| GGGAAGAGACATCGTGGTGG+CGG | + | chr5_4:40374676-40374695 | None:intergenic | 60.0% | |
| TTCGGGGGGAAGAGACATCG+TGG | + | chr5_4:40374682-40374701 | None:intergenic | 60.0% | |
| GTCGAGGGTTTGGGAGGAGA+TGG | + | chr5_4:40374751-40374770 | None:intergenic | 60.0% | |
| AGCTGAAGAACGAGCCAGGG+AGG | - | chr5_4:40375120-40375139 | Msa0850690:intron | 60.0% | |
| CACACAGAGAGGGGGGAATC+AGG | + | chr5_4:40375974-40375993 | None:intergenic | 60.0% | |
| CTGTCAATGTGGAGCGGGTG+AGG | - | chr5_4:40377127-40377146 | Msa0850690:intron | 60.0% | |
| GCCAGTAGAAGCCTGAGCAG+CGG | + | chr5_4:40377404-40377423 | None:intergenic | 60.0% | |
| CCTCCTCTTCAGCTCTGTCG+AGG | + | chr5_4:40378064-40378083 | None:intergenic | 60.0% | |
| CCTCGACAGAGCTGAAGAGG+AGG | - | chr5_4:40378061-40378080 | Msa0850690:CDS | 60.0% | |
| GGGGGGAAGAGACATCGTGG+TGG | + | chr5_4:40374679-40374698 | None:intergenic | 65.0% | |
| AGCTCGCAAACACGCCTCCC+TGG | + | chr5_4:40375137-40375156 | None:intergenic | 65.0% | |
| ! | GGAGGCGTGTTTGCGAGCTG+AGG | - | chr5_4:40375138-40375157 | Msa0850690:intron | 65.0% |
| GGGGAATCAGGTTCCTCCGC+AGG | + | chr5_4:40375962-40375981 | None:intergenic | 65.0% | |
| GGAAATAGCGGCCGCTGCTC+AGG | - | chr5_4:40377390-40377409 | Msa0850690:intron | 65.0% | |
| GCCGCTGCTCAGGCTTCTAC+TGG | - | chr5_4:40377400-40377419 | Msa0850690:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 40374531 | 40378698 | 40374531 | ID=Msa0850690;Name=Msa0850690 |
| chr5_4 | mRNA | 40374531 | 40378698 | 40374531 | ID=Msa0850690-mRNA-1;Parent=Msa0850690;Name=Msa0850690-mRNA-1;_AED=0.37;_eAED=0.37;_QI=153|1|1|1|1|1|6|163|328 |
| chr5_4 | exon | 40374531 | 40374837 | 40374531 | ID=Msa0850690-mRNA-1:exon:12741;Parent=Msa0850690-mRNA-1 |
| chr5_4 | exon | 40374936 | 40375058 | 40374936 | ID=Msa0850690-mRNA-1:exon:12740;Parent=Msa0850690-mRNA-1 |
| chr5_4 | exon | 40375147 | 40375252 | 40375147 | ID=Msa0850690-mRNA-1:exon:12739;Parent=Msa0850690-mRNA-1 |
| chr5_4 | exon | 40376086 | 40376240 | 40376086 | ID=Msa0850690-mRNA-1:exon:12738;Parent=Msa0850690-mRNA-1 |
| chr5_4 | exon | 40378004 | 40378270 | 40378004 | ID=Msa0850690-mRNA-1:exon:12737;Parent=Msa0850690-mRNA-1 |
| chr5_4 | exon | 40378354 | 40378698 | 40378354 | ID=Msa0850690-mRNA-1:exon:12736;Parent=Msa0850690-mRNA-1 |
| chr5_4 | five_prime_UTR | 40378546 | 40378698 | 40378546 | ID=Msa0850690-mRNA-1:five_prime_utr;Parent=Msa0850690-mRNA-1 |
| chr5_4 | CDS | 40378354 | 40378545 | 40378354 | ID=Msa0850690-mRNA-1:cds;Parent=Msa0850690-mRNA-1 |
| chr5_4 | CDS | 40378004 | 40378270 | 40378004 | ID=Msa0850690-mRNA-1:cds;Parent=Msa0850690-mRNA-1 |
| chr5_4 | CDS | 40376086 | 40376240 | 40376086 | ID=Msa0850690-mRNA-1:cds;Parent=Msa0850690-mRNA-1 |
| chr5_4 | CDS | 40375147 | 40375252 | 40375147 | ID=Msa0850690-mRNA-1:cds;Parent=Msa0850690-mRNA-1 |
| chr5_4 | CDS | 40374936 | 40375058 | 40374936 | ID=Msa0850690-mRNA-1:cds;Parent=Msa0850690-mRNA-1 |
| chr5_4 | CDS | 40374694 | 40374837 | 40374694 | ID=Msa0850690-mRNA-1:cds;Parent=Msa0850690-mRNA-1 |
| chr5_4 | three_prime_UTR | 40374531 | 40374693 | 40374531 | ID=Msa0850690-mRNA-1:three_prime_utr;Parent=Msa0850690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
