AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1460520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460520 MtrunA17_Chr2g0322351 69.841 756 202 11 1 751 1 735 0.0 1014
Msa1460520 MtrunA17_Chr4g0025201 61.823 757 269 9 1 752 1 742 0.0 924
Msa1460520 MtrunA17_Chr2g0322361 58.476 761 297 9 1 753 1 750 0.0 874
Msa1460520 MtrunA17_Chr2g0322371 58.886 754 289 10 1 750 1 737 0.0 857
Msa1460520 MtrunA17_Chr2g0322331 94.226 381 22 0 373 753 1 381 0.0 754
Msa1460520 MtrunA17_Chr2g0322341 95.677 347 15 0 1 347 3 349 0.0 689
Msa1460520 MtrunA17_Chr3g0088821 33.784 814 459 14 1 743 248 1052 3.02e-149 463
Msa1460520 MtrunA17_Chr8g0383701 34.761 794 441 13 21 746 289 1073 8.25e-146 455
Msa1460520 MtrunA17_Chr8g0364641 34.606 786 459 17 1 743 182 955 1.33e-144 448
Msa1460520 MtrunA17_Chr8g0352231 33.761 779 439 14 33 743 283 1052 1.69e-144 451
Msa1460520 MtrunA17_Chr4g0073711 34.296 796 459 16 1 743 228 1012 5.97e-144 448
Msa1460520 MtrunA17_Chr8g0379241 33.844 783 443 17 21 743 196 963 2.15e-141 440
Msa1460520 MtrunA17_Chr2g0284211 33.418 784 448 15 21 743 181 951 6.39e-141 439
Msa1460520 MtrunA17_Chr3g0137951 33.460 789 450 13 21 743 281 1060 9.53e-141 441
Msa1460520 MtrunA17_Chr7g0267731 32.676 811 468 15 1 743 160 960 3.94e-140 437
Msa1460520 MtrunA17_Chr1g0201731 34.035 808 450 16 8 743 275 1071 1.40e-137 433
Msa1460520 MtrunA17_Chr2g0296991 32.611 831 447 20 8 743 206 1018 8.50e-137 430
Msa1460520 MtrunA17_Chr3g0078671 33.585 795 447 17 21 743 238 1023 2.56e-136 429
Msa1460520 MtrunA17_Chr1g0183381 32.781 784 467 16 8 743 107 878 5.54e-136 424
Msa1460520 MtrunA17_Chr3g0102541 35.245 715 400 14 50 741 52 726 1.03e-128 400
Msa1460520 MtrunA17_Chr3g0102531 34.765 722 390 18 50 741 52 722 4.07e-125 390
Msa1460520 MtrunA17_Chr3g0102551 33.941 713 401 16 55 744 68 733 2.08e-121 381
Msa1460520 MtrunA17_Chr2g0298581 32.725 712 423 18 20 720 18 684 2.32e-112 356
Msa1460520 MtrunA17_Chr4g0046401 31.150 748 459 19 22 747 21 734 1.61e-111 355
Msa1460520 MtrunA17_Chr5g0410641 31.013 819 428 19 28 723 275 1079 1.65e-111 364
Msa1460520 MtrunA17_Chr3g0095791 31.474 699 432 17 28 720 26 683 1.24e-108 346
Msa1460520 MtrunA17_Chr2g0307191 31.466 696 431 18 31 720 29 684 5.26e-107 342
Msa1460520 MtrunA17_Chr1g0186381 30.661 711 440 14 47 743 58 729 9.78e-107 342
Msa1460520 MtrunA17_Chr4g0039801 29.612 824 447 21 21 723 289 1100 7.26e-104 344
Msa1460520 MtrunA17_Chr1g0165421 29.576 825 449 19 21 723 275 1089 2.70e-103 342
Msa1460520 MtrunA17_Chr7g0269741 29.499 878 468 25 4 746 293 1154 1.32e-101 338
Msa1460520 MtrunA17_Chr1g0165411 29.383 810 456 20 21 723 261 1061 6.70e-101 335
Msa1460520 MtrunA17_Chr2g0297351 29.697 825 441 20 21 723 175 982 7.91e-101 333
Msa1460520 MtrunA17_Chr3g0077511 30.715 713 438 19 20 720 18 686 2.27e-98 319
Msa1460520 MtrunA17_Chr7g0274751 31.864 590 301 15 26 538 117 682 1.43e-84 285
Msa1460520 MtrunA17_Chr2g0307241 40.237 169 92 4 31 195 29 192 3.38e-33 127
Msa1460520 MtrunA17_Chr3g0126641 27.962 211 105 7 311 475 1 210 3.81e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460520 AT2G32530.1 45.767 756 375 12 8 744 10 749 0.0 638
Msa1460520 AT2G32540.1 47.090 756 369 12 8 746 10 751 0.0 633
Msa1460520 AT4G15320.3 44.415 761 384 16 7 744 9 753 0.0 602
Msa1460520 AT4G15320.5 44.415 761 384 16 7 744 9 753 0.0 602
Msa1460520 AT2G32620.1 45.093 754 385 13 8 744 10 751 0.0 596
Msa1460520 AT4G15320.4 43.557 776 384 17 7 744 9 768 0.0 594
Msa1460520 AT4G15290.1 45.063 719 358 16 50 747 52 754 0.0 582
Msa1460520 AT2G32610.1 43.709 755 396 13 8 744 10 753 0.0 577
Msa1460520 AT2G32620.4 45.414 665 336 12 97 744 1 655 0.0 543
Msa1460520 AT2G32620.3 46.844 602 301 10 8 603 10 598 9.51e-177 520
Msa1460520 AT4G15320.2 42.235 689 315 15 7 642 9 667 2.42e-172 514
Msa1460520 AT4G15320.1 39.672 731 317 16 7 642 9 710 1.35e-163 494
Msa1460520 AT2G32620.2 48.743 517 248 8 8 518 10 515 2.48e-159 473
Msa1460520 AT5G09870.1 35.006 817 449 15 1 746 241 1046 1.74e-152 472
Msa1460520 AT5G05170.1 34.194 813 456 15 1 743 236 1039 5.80e-151 468
Msa1460520 AT5G64740.1 34.512 820 452 15 1 746 253 1061 2.33e-149 464
Msa1460520 AT4G32410.1 33.990 812 458 14 1 743 252 1054 4.12e-147 458
Msa1460520 AT4G18780.1 34.474 789 446 15 16 743 179 957 9.52e-147 454
Msa1460520 AT5G17420.1 34.929 773 443 15 21 743 238 1000 3.46e-145 452
Msa1460520 AT2G21770.1 33.293 817 463 15 1 746 259 1064 2.83e-141 443
Msa1460520 AT4G39350.1 33.738 824 451 16 1 746 254 1060 6.64e-140 439
Msa1460520 AT2G25540.1 34.340 795 447 17 15 743 249 1034 1.32e-139 438
Msa1460520 AT1G55850.1 37.199 707 376 18 50 741 67 720 4.95e-128 398
Msa1460520 AT4G24010.1 35.976 656 371 15 43 686 52 670 1.46e-121 382
Msa1460520 AT4G24000.1 34.930 710 401 21 37 734 43 703 2.12e-119 375
Msa1460520 AT4G23990.1 35.930 629 355 15 63 679 90 682 1.90e-116 369
Msa1460520 AT1G02730.1 29.966 891 454 28 4 746 298 1166 3.36e-106 351
Msa1460520 AT1G32180.1 28.853 863 469 20 21 751 122 971 7.38e-106 346
Msa1460520 AT1G32180.2 28.853 863 469 20 21 751 122 971 7.38e-106 346
Msa1460520 AT4G38190.1 28.834 815 446 18 21 723 272 1064 1.51e-104 345
Msa1460520 AT3G03050.1 29.218 818 456 19 21 723 294 1103 1.08e-101 338
Msa1460520 AT2G33100.2 28.692 826 454 18 21 723 183 996 1.43e-99 331
Msa1460520 AT2G33100.1 28.692 826 454 18 21 723 183 996 1.43e-99 331
Msa1460520 AT5G16910.1 28.554 823 452 18 21 723 297 1103 2.56e-99 332
Msa1460520 AT5G44030.1 40.206 388 215 6 8 378 199 586 2.18e-87 298
Msa1460520 AT5G44030.1 30.208 384 241 7 367 743 660 1023 8.08e-48 183
Msa1460520 AT5G44030.2 40.206 388 215 6 8 378 228 615 2.73e-87 298
Msa1460520 AT5G44030.2 30.208 384 241 7 367 743 689 1052 6.59e-48 184
Msa1460520 AT4G24000.2 33.829 538 297 18 199 720 3 497 1.15e-80 268
Msa1460520 AT4G23990.2 33.602 497 283 13 199 679 3 468 2.55e-77 259
Msa1460520 AT5G44030.3 43.624 298 159 3 90 378 10 307 6.43e-75 258
Msa1460520 AT5G44030.3 30.208 384 241 7 367 743 381 744 9.52e-49 184

Find 167 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAAATTTGCTGAAATT+TGG 0.070214 tig0040952:+4840 Msa1460520:CDS
CACTGTATTCACCGTGATTA+TGG 0.121470 tig0040952:-4720 None:intergenic
CTCCTCCTCCTCTTGCTTCT+TGG 0.121630 tig0040952:+3880 Msa1460520:CDS
CATATATTTGGATCACTAAT+TGG 0.128035 tig0040952:+9198 Msa1460520:CDS
ACCAGACCCAATAGCCTTTA+TGG 0.128110 tig0040952:+9037 Msa1460520:CDS
GAGAGTGCTTGTCATATATT+TGG 0.150924 tig0040952:+9186 Msa1460520:CDS
TGAATCAGCTACTCATATTT+TGG 0.202057 tig0040952:+8647 Msa1460520:CDS
AACCATGAATTCTTGTTTCT+TGG 0.206910 tig0040952:+9527 Msa1460520:CDS
TAAATTCTAGCTTACCAAAT+AGG 0.220996 tig0040952:-9163 None:intergenic
AAGTAAGTTAAGTAAGAAAA+AGG 0.224562 tig0040952:-10078 Msa1460530:three_prime_UTR
AAGGGAAGGTGTGATTATTA+TGG 0.236197 tig0040952:-3918 None:intergenic
ATCTCTTATGTTGGGCCATT+TGG 0.240446 tig0040952:-9085 None:intergenic
TTTCTTTGTTATTTCAAAAT+TGG 0.245721 tig0040952:-9592 None:intergenic
CTCTAAATTTGCTGAAATTT+GGG 0.247688 tig0040952:+4841 Msa1460520:CDS
TTGTTATTCTTCCCATTCTT+TGG 0.251052 tig0040952:-9506 None:intergenic
ACATTGTACTTCTTACAAAA+TGG 0.256529 tig0040952:-4866 None:intergenic
ACAATCTAAGTTTAGGATAA+AGG 0.281900 tig0040952:-7848 None:intergenic
CCAAATTTCAGCAAATTTAG+AGG 0.286690 tig0040952:-4840 None:intergenic
GTTGACATGGAATTGACTTT+TGG 0.293450 tig0040952:-5923 None:intergenic
AGAAGAGCATAACATATTTC+AGG 0.303603 tig0040952:-9236 None:intergenic
TGAATTATGCTAACCTTGTT+AGG 0.309142 tig0040952:-9296 None:intergenic
GTCAATTCCATGTCAACTAA+TGG 0.311861 tig0040952:+5929 Msa1460520:CDS
GGATCACTAATTGGGCATTA+AGG 0.313923 tig0040952:+9207 Msa1460520:CDS
GCTTGTTATGTTTCTGATGA+TGG 0.315894 tig0040952:+4782 Msa1460520:CDS
TATTAGGTGGGATGGTTATA+TGG 0.327354 tig0040952:+8945 Msa1460520:intron
TTGTGATGATGTGGTTGTTT+TGG 0.333496 tig0040952:-7686 None:intergenic
AGGAATCAAGTTCAAGTATA+AGG 0.339957 tig0040952:+10010 Msa1460520:three_prime_UTR
TCATCACAGAAATATCTAAA+TGG 0.341589 tig0040952:-4902 None:intergenic
TTGTTTGGGAAAGGAAAATA+TGG 0.347874 tig0040952:+9846 Msa1460520:CDS
CCAGACCCAATAGCCTTTAT+GGG 0.348235 tig0040952:+9038 Msa1460520:CDS
GAGGCGATCTAGGAAGGTTT+TGG 0.358416 tig0040952:-4022 None:intergenic
AAGAGTGGTACTAATGGATA+TGG 0.358830 tig0040952:+9762 Msa1460520:CDS
ACATCAGAGGATGTACTAAC+TGG 0.362031 tig0040952:+8972 Msa1460520:CDS
CAACATAAGAGATGGTCTTC+AGG 0.363015 tig0040952:+9095 Msa1460520:CDS
GAACAGCCCATAAAGGCTAT+TGG 0.366981 tig0040952:-9044 None:intergenic
TACATAGGAAGTGGATTTGC+AGG 0.367124 tig0040952:+8312 Msa1460520:CDS
CAACACTGCTTGGGGTAAAC+AGG 0.379634 tig0040952:+8746 Msa1460520:CDS
GGCTTCCACAAGAGCATAGA+AGG 0.381860 tig0040952:-4819 None:intergenic
GAGTAATTTCCCAAGTGATT+TGG 0.382822 tig0040952:+3770 Msa1460520:five_prime_UTR
TGCCACAATTCAAACATGAT+TGG 0.388663 tig0040952:+4948 Msa1460520:CDS
TGCCAAGAAACAAGAATTCA+TGG 0.392386 tig0040952:-9529 None:intergenic
CTGTTCACCACAAGATAACT+TGG 0.396199 tig0040952:+9061 Msa1460520:CDS
ACTGTATTCACCGTGATTAT+GGG 0.401091 tig0040952:-4719 None:intergenic
CTATGAATACAACACTGCTT+GGG 0.401733 tig0040952:+8737 Msa1460520:CDS
ACATGTCACAATCTAAGTTT+AGG 0.402100 tig0040952:-7855 None:intergenic
CAATCTAAGTTTAGGATAAA+GGG 0.407191 tig0040952:-7847 None:intergenic
TCTCAATTGCTTAAGTATGA+TGG 0.409938 tig0040952:-9559 None:intergenic
AAATTCTAGCTTACCAAATA+GGG 0.411386 tig0040952:-9162 None:intergenic
ATATATTTGGATCACTAATT+GGG 0.415497 tig0040952:+9199 Msa1460520:CDS
AGGGAAGGTGTGATTATTAT+GGG 0.417758 tig0040952:-3917 None:intergenic
TCAATTCCATGTCAACTAAT+GGG 0.422493 tig0040952:+5930 Msa1460520:CDS
GAAATTACTCAAGCCACAAA+TGG 0.423837 tig0040952:-3757 None:intergenic
CAATTCATTATTGTTGGCCA+TGG 0.426729 tig0040952:-4927 None:intergenic
AACAGCCCATAAAGGCTATT+GGG 0.428787 tig0040952:-9043 None:intergenic
AATGTTACCTTGATTATAGT+TGG 0.431199 tig0040952:-5993 None:intergenic
ACAAGATAACTTGGGCCAAA+TGG 0.434984 tig0040952:+9070 Msa1460520:CDS
ACCTAAGCAAGAGGCGATCT+AGG 0.435416 tig0040952:-4032 None:intergenic
AATAAAAGAACACCCATTTG+TGG 0.440887 tig0040952:+3744 None:intergenic
AACCTTGTTAGGCAAGAAAC+TGG 0.441866 tig0040952:-9285 None:intergenic
GTCTACAATATGCAAATCAT+TGG 0.442932 tig0040952:+9878 Msa1460520:CDS
ATAATAGAGCACATAAAATC+AGG 0.443215 tig0040952:+9456 Msa1460520:CDS
TGAAATTCAAAATGCAAAGA+AGG 0.444515 tig0040952:+8410 Msa1460520:CDS
CATAGAAGAAAAGTTATGTA+TGG 0.445792 tig0040952:+8372 Msa1460520:CDS
TTCCCAAGTGATTTGGTCCA+TGG 0.448897 tig0040952:+3777 Msa1460520:exon
TGATTCTGAGCTTCCAGCAT+TGG 0.449066 tig0040952:+4658 Msa1460520:CDS
TCCTAGATCGCCTCTTGCTT+AGG 0.449392 tig0040952:+4031 Msa1460520:CDS
CCCATAAAGGCTATTGGGTC+TGG 0.456254 tig0040952:-9038 None:intergenic
GAATACAGTGTTATCATTGT+TGG 0.458432 tig0040952:+4733 Msa1460520:CDS
TTGTGGTGAACAGCCCATAA+AGG 0.462839 tig0040952:-9051 None:intergenic
TACCACCATTGCTAATTGAA+TGG 0.467604 tig0040952:+9932 Msa1460520:exon
AACCAATCATGTTTGAATTG+TGG 0.468516 tig0040952:-4950 None:intergenic
AACCAAGAAGCAAGAGGAGG+AGG 0.471797 tig0040952:-3882 None:intergenic
TTGAAAGGATTGTTTGGGAA+AGG 0.473520 tig0040952:+9837 Msa1460520:CDS
CTGAAGACCATCTCTTATGT+TGG 0.478356 tig0040952:-9094 None:intergenic
GGAGTTGGTAATGATGCAAT+AGG 0.479631 tig0040952:-9264 None:intergenic
GGTATGTGCAGGAGTCCATT+TGG 0.480683 tig0040952:-4001 None:intergenic
TAGATCACAAATAGAGTTGT+GGG 0.481223 tig0040952:-9420 None:intergenic
CTGGTAAAGAGTGGTACTAA+TGG 0.487737 tig0040952:+9756 Msa1460520:CDS
GTGTTACAGACAAGAGTCTC+TGG 0.490146 tig0040952:+7808 Msa1460520:intron
ACAAGAGCATAGAAGGTAAG+AGG 0.491143 tig0040952:-4812 None:intergenic
TAACAAGCTAGCTTATTAGC+TGG 0.493726 tig0040952:-4767 None:intergenic
CTCCAGTTTCTTGCCTAACA+AGG 0.497747 tig0040952:+9283 Msa1460520:CDS
TTTGGTAATATTAGGTGGGA+TGG 0.500347 tig0040952:+8937 Msa1460520:intron
AACATAAGAGATGGTCTTCA+GGG 0.502083 tig0040952:+9096 Msa1460520:CDS
TGAAGACCATCTCTTATGTT+GGG 0.502676 tig0040952:-9093 None:intergenic
ACATGATTGGTTGAAAATGA+AGG 0.503007 tig0040952:+4961 Msa1460520:CDS
AGTGGATTTGCAGGACTTCA+AGG 0.504329 tig0040952:+8321 Msa1460520:CDS
TCTTACCTTCTATGCTCTTG+TGG 0.505123 tig0040952:+4814 Msa1460520:CDS
CAAGATCAAGAGATTTGTAA+AGG 0.507873 tig0040952:-8686 None:intergenic
AGGAGTCCATTTGGTGCTCA+TGG 0.508334 tig0040952:-3992 None:intergenic
CTTCAAGGGATTATATATGC+TGG 0.510948 tig0040952:+8336 Msa1460520:CDS
ATGGTGGAACAACCAAAGAA+TGG 0.512502 tig0040952:+9494 Msa1460520:CDS
TGGTGGAACAACCAAAGAAT+GGG 0.513248 tig0040952:+9495 Msa1460520:CDS
GCGGTCAAAGATGATGCTTA+TGG 0.516690 tig0040952:+7982 Msa1460520:CDS
AAATTACTCAAGCCACAAAT+GGG 0.524461 tig0040952:-3756 None:intergenic
ATTATGGGTGGTTCTAGCAC+TGG 0.524715 tig0040952:-4704 None:intergenic
GTATTGTAGTACATAGGAAG+TGG 0.525317 tig0040952:+8303 Msa1460520:intron
TTGTGGCAATTCATTATTGT+TGG 0.527636 tig0040952:-4933 None:intergenic
TTACCACCATGAGCACCAAA+TGG 0.530730 tig0040952:+3986 Msa1460520:CDS
ATTTGGCCCAAGTTATCTTG+TGG 0.533548 tig0040952:-9068 None:intergenic
AAATCATCCAACTATAATCA+AGG 0.534421 tig0040952:+5986 Msa1460520:CDS
ACTATGAATACAACACTGCT+TGG 0.534610 tig0040952:+8736 Msa1460520:CDS
GTTACAAACATGTCCAATGC+TGG 0.534948 tig0040952:-4671 None:intergenic
GAAATTCAAAATGCAAAGAA+GGG 0.542534 tig0040952:+8411 Msa1460520:CDS
TGAATCCAACAAAATGCAAA+GGG 0.546368 tig0040952:-7908 None:intergenic
AATTCTCCCATTAGTTGACA+TGG 0.546581 tig0040952:-5936 None:intergenic
GGTACTAATGGATATGGAGC+AGG 0.548335 tig0040952:+9768 Msa1460520:CDS
TCTCCATGGACCAAATCACT+TGG 0.549209 tig0040952:-3780 None:intergenic
TATAAATTTACCTAAGCAAG+AGG 0.549629 tig0040952:-4041 None:intergenic
AGTCATGGTTTACCACCACT+TGG 0.553899 tig0040952:+3962 Msa1460520:CDS
GAAGTTACCAATGAAAATGT+TGG 0.558049 tig0040952:+9633 Msa1460520:CDS
AATCTTGAAAGAACAATGAA+AGG 0.558587 tig0040952:+9990 Msa1460520:three_prime_UTR
GGGCTCAAATTCCACATGAA+AGG 0.564575 tig0040952:+8993 Msa1460520:CDS
TCATTGGTAACTTCATGAGA+AGG 0.564621 tig0040952:-9624 None:intergenic
GATTATTATGGGAGGAAACT+CGG 0.565805 tig0040952:-3906 None:intergenic
CAACCACATCATCACAAAGC+TGG 0.567676 tig0040952:+7692 Msa1460520:CDS
AAGCAAGAGGCGATCTAGGA+AGG 0.568077 tig0040952:-4028 None:intergenic
TTGAATCCAACAAAATGCAA+AGG 0.569447 tig0040952:-7909 None:intergenic
GCACCAGCTTTGTGATGATG+TGG 0.570133 tig0040952:-7695 None:intergenic
AAATTGGACAATGCTTGCTA+AGG 0.571332 tig0040952:-9133 None:intergenic
ATCAAGTTCAAGTATAAGGA+AGG 0.571397 tig0040952:+10014 Msa1460520:three_prime_UTR
GTGGATTTGCAGGACTTCAA+GGG 0.572131 tig0040952:+8322 Msa1460520:CDS
CAAAATGCAAAGAAGGGTCA+AGG 0.573224 tig0040952:+8417 Msa1460520:CDS
AACCATTCAATTAGCAATGG+TGG 0.575991 tig0040952:-9934 None:intergenic
ATATTTCTGTGATGAAGCCA+TGG 0.580219 tig0040952:+4910 Msa1460520:CDS
GTAGATCACAAATAGAGTTG+TGG 0.582034 tig0040952:-9421 None:intergenic
ACAAGCAAAATTGTCGTGCC+CGG 0.582052 tig0040952:-9690 None:intergenic
TTGGTAATGATGCAATAGGC+AGG 0.582759 tig0040952:-9260 None:intergenic
ACCGCATCATAGAATCGTTG+TGG 0.585748 tig0040952:-7964 None:intergenic
TCAGCTTGTGGCTTTGCCAA+TGG 0.587045 tig0040952:+8008 Msa1460520:CDS
TCAAATTCCACATGAAAGGA+TGG 0.590005 tig0040952:+8997 Msa1460520:CDS
TGATTTGCATATTGTAGACA+AGG 0.592374 tig0040952:-9874 None:intergenic
TATGAATACAACACTGCTTG+GGG 0.596074 tig0040952:+8738 Msa1460520:CDS
AGCTGGTGCAATGAATGTCT+TGG 0.600350 tig0040952:+7709 Msa1460520:CDS
CAGGATTATCAATCAGAACA+TGG 0.600653 tig0040952:+9475 Msa1460520:CDS
TTACCAATGAAAATGTTGGT+AGG 0.601368 tig0040952:+9637 Msa1460520:CDS
TTAGTACCACTCTTTACCAG+TGG 0.604307 tig0040952:-9753 None:intergenic
TAGAACCATTCAATTAGCAA+TGG 0.607638 tig0040952:-9937 None:intergenic
AAGGGTCAAGGCTTCACCAA+TGG 0.607649 tig0040952:+8429 Msa1460520:CDS
ATTGGACATGTTTGTAACAA+CGG 0.611014 tig0040952:+4676 Msa1460520:CDS
AAATGGCCCAACATAAGAGA+TGG 0.613887 tig0040952:+9087 Msa1460520:CDS
CATCAGAGGATGTACTAACT+GGG 0.617224 tig0040952:+8973 Msa1460520:CDS
GTTAGGCAAGAAACTGGAGT+TGG 0.617666 tig0040952:-9279 None:intergenic
CTCCATGGACCAAATCACTT+GGG 0.618706 tig0040952:-3779 None:intergenic
AAATGCAATAAAGCAAGGGA+AGG 0.620983 tig0040952:-3932 None:intergenic
TCTACATATCTAGAGAGAAG+AGG 0.622858 tig0040952:+7663 Msa1460520:CDS
TAATGGATATGGAGCAGGAG+AGG 0.629069 tig0040952:+9773 Msa1460520:CDS
TGCTTATGGAAATCAGCTTG+TGG 0.634611 tig0040952:+7996 Msa1460520:CDS
CTAGATATGTAGATAATGTG+AGG 0.637541 tig0040952:-7653 None:intergenic
CAGATCGCCATCCTTTCATG+TGG 0.637823 tig0040952:-9004 None:intergenic
GTATTCACCGTGATTATGGG+TGG 0.643871 tig0040952:-4716 None:intergenic
CTCGGTAACCAAGAAGCAAG+AGG 0.649537 tig0040952:-3888 None:intergenic
GTTATATGGATCAACATCAG+AGG 0.652685 tig0040952:+8959 Msa1460520:CDS
TGTTCACCACAAGATAACTT+GGG 0.658857 tig0040952:+9062 Msa1460520:CDS
GCTAGAACCACCCATAATCA+CGG 0.663902 tig0040952:+4709 Msa1460520:CDS
AGTCCATTTGGTGCTCATGG+TGG 0.664459 tig0040952:-3989 None:intergenic
TCCACAACGATTCTATGATG+CGG 0.666078 tig0040952:+7963 Msa1460520:CDS
TTGGTTGGGATGGAAACCAC+TGG 0.671984 tig0040952:+9737 Msa1460520:CDS
TGGAAACCACTGGTAAAGAG+TGG 0.674984 tig0040952:+9747 Msa1460520:CDS
GATTTGCATATTGTAGACAA+GGG 0.682780 tig0040952:-9873 None:intergenic
GAAGGTGTGATTATTATGGG+AGG 0.688869 tig0040952:-3914 None:intergenic
GGTAACCAAGAAGCAAGAGG+AGG 0.699087 tig0040952:-3885 None:intergenic
AGATCACAAATAGAGTTGTG+GGG 0.709874 tig0040952:-9419 None:intergenic
GCTCATGGTGGTAATCCAAG+TGG 0.712389 tig0040952:-3977 None:intergenic
TCTAACAGGAACTCAGCATG+TGG 0.714238 tig0040952:+9394 Msa1460520:intron
CATGGTGGTAATCCAAGTGG+TGG 0.717748 tig0040952:-3974 None:intergenic
GATTATCAATCAGAACATGG+TGG 0.727744 tig0040952:+9478 Msa1460520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAATTCTATTAAGA+AGG + tig0040952:4552-4571 Msa1460520:intron 10.0%
!! AATATTAATTCTATTAAGAA+GGG + tig0040952:4553-4572 Msa1460520:intron 10.0%
!! ATATATTAAAAAAGCTAAAA+TGG - tig0040952:5142-5161 None:intergenic 10.0%
!!! TTCTATTTATGTTTTTTTTA+AGG + tig0040952:5371-5390 Msa1460520:intron 10.0%
!! ATTTATTTATGTCTAAATAA+TGG - tig0040952:5454-5473 None:intergenic 10.0%
!! TTTATATTTGAAAATTGATA+TGG - tig0040952:5492-5511 None:intergenic 10.0%
!! TCAAAATTATTATTGAAAAT+AGG + tig0040952:5693-5712 Msa1460520:intron 10.0%
!! TTTAAGTAAAAAATTACATT+TGG - tig0040952:6372-6391 None:intergenic 10.0%
!! TTAAAAAAAAAAATAGTGTT+TGG + tig0040952:6959-6978 Msa1460520:intron 10.0%
!!! TAGATAGTTTAATTTTTTTT+TGG - tig0040952:7048-7067 None:intergenic 10.0%
!! TACAAATAATAAACTTAATA+AGG + tig0040952:7125-7144 Msa1460520:intron 10.0%
!! GAAAAATAATGTATACTATA+AGG - tig0040952:4120-4139 None:intergenic 15.0%
!!! TTAATATATATTTTTTGGCA+TGG + tig0040952:5153-5172 Msa1460520:intron 15.0%
!!! ACCATTTTTTAAATAACTTA+CGG - tig0040952:5224-5243 None:intergenic 15.0%
!!! ATTTGTTTTGACAATATTAA+TGG - tig0040952:5422-5441 None:intergenic 15.0%
!! TTGAAAATAGGAAAAATATT+TGG + tig0040952:5705-5724 Msa1460520:intron 15.0%
!! TAACATTAACATTTATAGAA+AGG + tig0040952:6009-6028 Msa1460520:intron 15.0%
!! ATTTGTCAAAAAAAATATTG+AGG - tig0040952:6785-6804 None:intergenic 15.0%
!!! ATATATATTAATACCCATTT+TGG + tig0040952:7219-7238 Msa1460520:intron 15.0%
!!! ATTTGATGATAATAAAACTA+AGG - tig0040952:7575-7594 None:intergenic 15.0%
!! ATTATAATTAGTCATGTTAA+TGG - tig0040952:8094-8113 None:intergenic 15.0%
!! ACTAATTATAATATATGTCA+CGG + tig0040952:8102-8121 Msa1460520:intron 15.0%
!!! TTTCTTTGTTATTTCAAAAT+TGG - tig0040952:9595-9614 None:intergenic 15.0%
!! ATAAAAATGCAATAAAGCAA+GGG - tig0040952:3939-3958 None:intergenic 20.0%
!! ATAGAATGCAATTAAGTATA+GGG - tig0040952:4072-4091 None:intergenic 20.0%
!! TTAAAACTTGCATTAAAATC+TGG - tig0040952:4253-4272 None:intergenic 20.0%
!! TGTAAATAATTACAACAAAG+AGG + tig0040952:4358-4377 Msa1460520:intron 20.0%
!! GTAAATAATTACAACAAAGA+GGG + tig0040952:4359-4378 Msa1460520:intron 20.0%
!! TAAATAATTACAACAAAGAG+GGG + tig0040952:4360-4379 Msa1460520:intron 20.0%
!!! CTAATATTTTCTTCTTTATC+CGG + tig0040952:4403-4422 Msa1460520:intron 20.0%
!! AAAGAACAAATGTTAAAATC+CGG - tig0040952:4425-4444 None:intergenic 20.0%
!! ATAGTAAAAGATTTCAATGT+GGG - tig0040952:4530-4549 None:intergenic 20.0%
!! TATAGTAAAAGATTTCAATG+TGG - tig0040952:4531-4550 None:intergenic 20.0%
!!! ATTTGTTGTTTTTTTCCAAA+AGG + tig0040952:4630-4649 Msa1460520:intron 20.0%
!!! TTTGTTGTTTTTTTCCAAAA+GGG + tig0040952:4631-4650 Msa1460520:intron 20.0%
!! CATTTACTTACTTAAGAAAA+TGG + tig0040952:5033-5052 Msa1460520:intron 20.0%
!!! CCATTTTTTAAATAACTTAC+GGG - tig0040952:5223-5242 None:intergenic 20.0%
!!! TTTTATTTTGTGTTTTTACG+TGG + tig0040952:5520-5539 Msa1460520:intron 20.0%
!! AGAAAAAAGAAAAAAGAATG+TGG + tig0040952:5664-5683 Msa1460520:intron 20.0%
!!! ATAGCTTTAGAATACAATAT+TGG + tig0040952:5774-5793 Msa1460520:intron 20.0%
!!! AATTGTTTTTCCATTGTTTT+AGG + tig0040952:6284-6303 Msa1460520:intron 20.0%
!!! ATTGTTTTTCCATTGTTTTA+GGG + tig0040952:6285-6304 Msa1460520:intron 20.0%
!! AATATAAAACCCTAAAACAA+TGG - tig0040952:6297-6316 None:intergenic 20.0%
!! GAATGAGAATTAATTATGTT+TGG - tig0040952:7326-7345 None:intergenic 20.0%
!! TTTCTTTACCAACATTATAT+TGG - tig0040952:8241-8260 None:intergenic 20.0%
!! AGTATATCTTAATATACCAT+TGG - tig0040952:8448-8467 None:intergenic 20.0%
!!! TCAAAATGAAAATTTTGTTG+AGG + tig0040952:8489-8508 Msa1460520:intron 20.0%
!! GAATGCTATTATAAAATAGA+AGG + tig0040952:8518-8537 Msa1460520:intron 20.0%
!! GTTTATACTAATTGACTAAT+AGG - tig0040952:8551-8570 None:intergenic 20.0%
!!! AGTCAATTAGTATAAACTTT+TGG + tig0040952:8554-8573 Msa1460520:intron 20.0%
!! AAAGAAACAATGCAAAAATT+TGG + tig0040952:8606-8625 Msa1460520:CDS 20.0%
!!! GTTAACTTTTTGGTAATATT+AGG + tig0040952:8929-8948 Msa1460520:intron 20.0%
!! ATATATTTGGATCACTAATT+GGG + tig0040952:9199-9218 Msa1460520:CDS 20.0%
!! ATCATCTAAACATCTTATAA+AGG + tig0040952:9348-9367 Msa1460520:intron 20.0%
!! AGTAAGTTAAGTAAGAAAAA+GGG - tig0040952:10080-10099 Msa1460530:three_prime_UTR 20.0%
!! AAGTAAGTTAAGTAAGAAAA+AGG - tig0040952:10081-10100 Msa1460530:three_prime_UTR 20.0%
! CATAAAAATGCAATAAAGCA+AGG - tig0040952:3940-3959 None:intergenic 25.0%
! TATAAATTTACCTAAGCAAG+AGG - tig0040952:4044-4063 None:intergenic 25.0%
! GATAGAATGCAATTAAGTAT+AGG - tig0040952:4073-4092 None:intergenic 25.0%
! AGTATATTAGTCGTTGAATT+TGG + tig0040952:4154-4173 Msa1460520:intron 25.0%
! TAATTATTTACATGCATCCA+AGG - tig0040952:4350-4369 None:intergenic 25.0%
! TATATAGTATATACCATACC+GGG - tig0040952:4489-4508 None:intergenic 25.0%
! CTATATAGTATATACCATAC+CGG - tig0040952:4490-4509 None:intergenic 25.0%
!!! CTCTAAATTTGCTGAAATTT+GGG + tig0040952:4841-4860 Msa1460520:CDS 25.0%
! ACATTGTACTTCTTACAAAA+TGG - tig0040952:4869-4888 None:intergenic 25.0%
! TCATCACAGAAATATCTAAA+TGG - tig0040952:4905-4924 None:intergenic 25.0%
! TATCATTTCTCAAAGACAAA+AGG - tig0040952:5070-5089 None:intergenic 25.0%
!! GATATATTGACAACCATTTT+AGG + tig0040952:5086-5105 Msa1460520:intron 25.0%
!!! ACCATTTTAGGTCAAATTTA+CGG + tig0040952:5098-5117 Msa1460520:intron 25.0%
! CAAAAATATAAAATGTGACG+TGG - tig0040952:5194-5213 None:intergenic 25.0%
! CCCGTAAGTTATTTAAAAAA+TGG + tig0040952:5220-5239 Msa1460520:intron 25.0%
! TAGAATACAATATTGGATCT+TGG + tig0040952:5781-5800 Msa1460520:intron 25.0%
!!! ATTTTTAGCTTCACAAATGA+AGG - tig0040952:5833-5852 None:intergenic 25.0%
! TTCATTTGTGAAGCTAAAAA+TGG + tig0040952:5832-5851 Msa1460520:intron 25.0%
! TCATTTGTGAAGCTAAAAAT+GGG + tig0040952:5833-5852 Msa1460520:intron 25.0%
! AAATCATCCAACTATAATCA+AGG + tig0040952:5986-6005 Msa1460520:CDS 25.0%
! AATGTTACCTTGATTATAGT+TGG - tig0040952:5996-6015 None:intergenic 25.0%
!! GAAAGGAATAGAAATCTTTT+TGG + tig0040952:6026-6045 Msa1460520:intron 25.0%
!!! TGGTATGTCATTTTTTTCAA+TGG - tig0040952:6099-6118 None:intergenic 25.0%
!! TTGAAGTCATTAAAGTTTTC+AGG + tig0040952:6137-6156 Msa1460520:intron 25.0%
! ATCTGAACCAATAAAAAAAC+CGG - tig0040952:6209-6228 None:intergenic 25.0%
! CTAAATAATTGGTCACAAAA+GGG - tig0040952:6461-6480 None:intergenic 25.0%
! ACTAAATAATTGGTCACAAA+AGG - tig0040952:6462-6481 None:intergenic 25.0%
!! AAACTTGTTTACAACTTTGT+TGG - tig0040952:6730-6749 None:intergenic 25.0%
! TGTGTTATGGAAAACTTAAT+GGG - tig0040952:6920-6939 None:intergenic 25.0%
! ATGTGTTATGGAAAACTTAA+TGG - tig0040952:6921-6940 None:intergenic 25.0%
! AGTCAAAATTCAATGTGTTA+TGG - tig0040952:6933-6952 None:intergenic 25.0%
! ATCAAAAAAAACTACCTACA+TGG + tig0040952:7519-7538 Msa1460520:intron 25.0%
! TCAAAAAAAACTACCTACAT+GGG + tig0040952:7520-7539 Msa1460520:intron 25.0%
!! CAATCTAAGTTTAGGATAAA+GGG - tig0040952:7850-7869 None:intergenic 25.0%
!! ACAATCTAAGTTTAGGATAA+AGG - tig0040952:7851-7870 None:intergenic 25.0%
! ATAGAAAAAATGTGATTGAG+AGG - tig0040952:8161-8180 None:intergenic 25.0%
!! TTTTGTGTATTGTAGTACAT+AGG + tig0040952:8297-8316 Msa1460520:intron 25.0%
! CATAGAAGAAAAGTTATGTA+TGG + tig0040952:8372-8391 Msa1460520:CDS 25.0%
!! GCATTTTGAATTTCATTATG+AGG - tig0040952:8405-8424 None:intergenic 25.0%
! TGAAATTCAAAATGCAAAGA+AGG + tig0040952:8410-8429 Msa1460520:CDS 25.0%
! GAAATTCAAAATGCAAAGAA+GGG + tig0040952:8411-8430 Msa1460520:CDS 25.0%
!! CCTAGCTAAGAAAATTATTT+TGG - tig0040952:8807-8826 None:intergenic 25.0%
!! CCAAAATAATTTTCTTAGCT+AGG + tig0040952:8804-8823 Msa1460520:intron 25.0%
!! TGGATATAAAAGTTTAGGTT+TGG - tig0040952:8831-8850 None:intergenic 25.0%
!! CTAAACTTTTATATCCAAGA+GGG + tig0040952:8834-8853 Msa1460520:intron 25.0%
!!! AACTTTTTGGTAATATTAGG+TGG + tig0040952:8932-8951 Msa1460520:intron 25.0%
!!! ACTTTTTGGTAATATTAGGT+GGG + tig0040952:8933-8952 Msa1460520:intron 25.0%
!!! AAATTCTAGCTTACCAAATA+GGG - tig0040952:9165-9184 None:intergenic 25.0%
!!! TAAATTCTAGCTTACCAAAT+AGG - tig0040952:9166-9185 None:intergenic 25.0%
! CATATATTTGGATCACTAAT+TGG + tig0040952:9198-9217 Msa1460520:CDS 25.0%
! ATAATAGAGCACATAAAATC+AGG + tig0040952:9456-9475 Msa1460520:CDS 25.0%
!! TCATAGCAATTTTTATGAGT+TGG + tig0040952:9718-9737 Msa1460520:CDS 25.0%
!!! CATTTTTGAAAGGATTGTTT+GGG + tig0040952:9832-9851 Msa1460520:CDS 25.0%
! AATCTTGAAAGAACAATGAA+AGG + tig0040952:9990-10009 Msa1460520:three_prime_UTR 25.0%
AAATTACTCAAGCCACAAAT+GGG - tig0040952:3759-3778 None:intergenic 30.0%
!!! TATTTTTTCATAGAGAGGGA+GGG - tig0040952:3815-3834 None:intergenic 30.0%
!!! ATATTTTTTCATAGAGAGGG+AGG - tig0040952:3816-3835 None:intergenic 30.0%
TCCCTCTCTATGAAAAAATA+TGG + tig0040952:3815-3834 Msa1460520:CDS 30.0%
!!! CCCATATTTTTTCATAGAGA+GGG - tig0040952:3819-3838 None:intergenic 30.0%
CCCTCTCTATGAAAAAATAT+GGG + tig0040952:3816-3835 Msa1460520:CDS 30.0%
!!! ACCCATATTTTTTCATAGAG+AGG - tig0040952:3820-3839 None:intergenic 30.0%
!! ACACACATTTTCAAGAGTTA+TGG + tig0040952:3843-3862 Msa1460520:CDS 30.0%
! TTGCATTTTTATGTGAGTCA+TGG + tig0040952:3947-3966 Msa1460520:CDS 30.0%
AACTTGCATTAAAATCTGGA+CGG - tig0040952:4249-4268 None:intergenic 30.0%
ATGACACGATTCATATTTCA+AGG - tig0040952:4299-4318 None:intergenic 30.0%
ATTGGACATGTTTGTAACAA+CGG + tig0040952:4676-4695 Msa1460520:CDS 30.0%
GAATACAGTGTTATCATTGT+TGG + tig0040952:4733-4752 Msa1460520:CDS 30.0%
CCAAATTTCAGCAAATTTAG+AGG - tig0040952:4843-4862 None:intergenic 30.0%
!! CCTCTAAATTTGCTGAAATT+TGG + tig0040952:4840-4859 Msa1460520:CDS 30.0%
TTGTGGCAATTCATTATTGT+TGG - tig0040952:4936-4955 None:intergenic 30.0%
AACCAATCATGTTTGAATTG+TGG - tig0040952:4953-4972 None:intergenic 30.0%
! ACATGATTGGTTGAAAATGA+AGG + tig0040952:4961-4980 Msa1460520:CDS 30.0%
TCCGTAAATTTGACCTAAAA+TGG - tig0040952:5102-5121 None:intergenic 30.0%
ATAAAATGTGACGTGGATAT+TGG - tig0040952:5187-5206 None:intergenic 30.0%
CCAAAAGCAAAATAATTGTC+CGG + tig0040952:5310-5329 Msa1460520:intron 30.0%
ACTACATTTACATATTCTGC+CGG - tig0040952:5332-5351 None:intergenic 30.0%
TTTGAAAATGACATCTAGCA+TGG - tig0040952:5570-5589 None:intergenic 30.0%
GGTGTAAAAAATAGAGTAAG+TGG + tig0040952:5609-5628 Msa1460520:intron 30.0%
!! TGTGTGTTTTTACAATTTGC+AGG + tig0040952:5860-5879 Msa1460520:intron 30.0%
!! TTGACATGGAATTGACTTTT+GGG - tig0040952:5925-5944 None:intergenic 30.0%
TCAATTCCATGTCAACTAAT+GGG + tig0040952:5930-5949 Msa1460520:CDS 30.0%
AATAATGCCAGTGGTAATAA+TGG - tig0040952:6119-6138 None:intergenic 30.0%
!!! TCACAGTTTTTTATGGTGTT+TGG + tig0040952:6541-6560 Msa1460520:intron 30.0%
TTTGAGTGAAAAGTGAGTTT+GGG - tig0040952:6605-6624 None:intergenic 30.0%
! AAAGATGTCATGGGTAATTT+TGG - tig0040952:6699-6718 None:intergenic 30.0%
GAGAATGATAAAGATGTCAT+GGG - tig0040952:6708-6727 None:intergenic 30.0%
AGGTGAGTAAACAAATATTG+AGG - tig0040952:6813-6832 None:intergenic 30.0%
GAACGTGTAATTACCAAAAT+GGG - tig0040952:7235-7254 None:intergenic 30.0%
TGAACGTGTAATTACCAAAA+TGG - tig0040952:7236-7255 None:intergenic 30.0%
!! GAGTTTGAGAGAATTGATTT+TGG - tig0040952:7362-7381 None:intergenic 30.0%
TTATAGACTAAGTGTGTGTT+TGG - tig0040952:7419-7438 None:intergenic 30.0%
TCCTTAAAAAAACCAACTAC+CGG - tig0040952:7548-7567 None:intergenic 30.0%
! GTTTTTCTTCATATACTGCT+AGG + tig0040952:7595-7614 Msa1460520:intron 30.0%
CTAGATATGTAGATAATGTG+AGG - tig0040952:7656-7675 None:intergenic 30.0%
ACATGTCACAATCTAAGTTT+AGG - tig0040952:7858-7877 None:intergenic 30.0%
TGAATCCAACAAAATGCAAA+GGG - tig0040952:7911-7930 None:intergenic 30.0%
TTGAATCCAACAAAATGCAA+AGG - tig0040952:7912-7931 None:intergenic 30.0%
! TTGCATTTTGTTGGATTCAA+AGG + tig0040952:7912-7931 Msa1460520:CDS 30.0%
! TGCATTTTGTTGGATTCAAA+GGG + tig0040952:7913-7932 Msa1460520:CDS 30.0%
TATGTCACGGAAAATATAGT+TGG + tig0040952:8115-8134 Msa1460520:intron 30.0%
ATATAGTTGGTCATCTTTAG+TGG + tig0040952:8128-8147 Msa1460520:intron 30.0%
TATAGTTGGTCATCTTTAGT+GGG + tig0040952:8129-8148 Msa1460520:intron 30.0%
!! GAACTCGAGATTTTGTTTAA+AGG + tig0040952:8192-8211 Msa1460520:intron 30.0%
! AAACTTTTGGTATCTTGTGT+AGG + tig0040952:8567-8586 Msa1460520:intron 30.0%
! CAAAAATTTGGAACGTCAAA+GGG + tig0040952:8618-8637 Msa1460520:CDS 30.0%
! TGAATCAGCTACTCATATTT+TGG + tig0040952:8647-8666 Msa1460520:CDS 30.0%
CAAGATCAAGAGATTTGTAA+AGG - tig0040952:8689-8708 None:intergenic 30.0%
CCTCTTGGATATAAAAGTTT+AGG - tig0040952:8836-8855 None:intergenic 30.0%
! CCTAAACTTTTATATCCAAG+AGG + tig0040952:8833-8852 Msa1460520:intron 30.0%
! TGCTTCTTACGTTAACTTTT+TGG + tig0040952:8919-8938 Msa1460520:intron 30.0%
! AGAAGAGCATAACATATTTC+AGG - tig0040952:9239-9258 None:intergenic 30.0%
TGAATTATGCTAACCTTGTT+AGG - tig0040952:9299-9318 None:intergenic 30.0%
TAGATCACAAATAGAGTTGT+GGG - tig0040952:9423-9442 None:intergenic 30.0%
! TTGTTATTCTTCCCATTCTT+TGG - tig0040952:9509-9528 None:intergenic 30.0%
! AACCATGAATTCTTGTTTCT+TGG + tig0040952:9527-9546 Msa1460520:CDS 30.0%
TCTCAATTGCTTAAGTATGA+TGG - tig0040952:9562-9581 None:intergenic 30.0%
GAAGTTACCAATGAAAATGT+TGG + tig0040952:9633-9652 Msa1460520:CDS 30.0%
TTACCAATGAAAATGTTGGT+AGG + tig0040952:9637-9656 Msa1460520:CDS 30.0%
!!! AGCAATTTTTATGAGTTGGT+TGG + tig0040952:9722-9741 Msa1460520:CDS 30.0%
!!! GCAATTTTTATGAGTTGGTT+GGG + tig0040952:9723-9742 Msa1460520:CDS 30.0%
CCAAACAATCCTTTCAAAAA+TGG - tig0040952:9834-9853 None:intergenic 30.0%
!! CCATTTTTGAAAGGATTGTT+TGG + tig0040952:9831-9850 Msa1460520:CDS 30.0%
TTGTTTGGGAAAGGAAAATA+TGG + tig0040952:9846-9865 Msa1460520:CDS 30.0%
GATTTGCATATTGTAGACAA+GGG - tig0040952:9876-9895 None:intergenic 30.0%
! TGATTTGCATATTGTAGACA+AGG - tig0040952:9877-9896 None:intergenic 30.0%
GTCTACAATATGCAAATCAT+TGG + tig0040952:9878-9897 Msa1460520:CDS 30.0%
TAGAACCATTCAATTAGCAA+TGG - tig0040952:9940-9959 None:intergenic 30.0%
AGGAATCAAGTTCAAGTATA+AGG + tig0040952:10010-10029 Msa1460520:three_prime_UTR 30.0%
ATCAAGTTCAAGTATAAGGA+AGG + tig0040952:10014-10033 Msa1460520:three_prime_UTR 30.0%
GAAATTACTCAAGCCACAAA+TGG - tig0040952:3760-3779 None:intergenic 35.0%
GAGTAATTTCCCAAGTGATT+TGG + tig0040952:3770-3789 Msa1460520:five_prime_UTR 35.0%
GATTATTATGGGAGGAAACT+CGG - tig0040952:3909-3928 None:intergenic 35.0%
! AGGGAAGGTGTGATTATTAT+GGG - tig0040952:3920-3939 None:intergenic 35.0%
! AAGGGAAGGTGTGATTATTA+TGG - tig0040952:3921-3940 None:intergenic 35.0%
AAATGCAATAAAGCAAGGGA+AGG - tig0040952:3935-3954 None:intergenic 35.0%
TACATCATTGGTCATTGGAT+CGG + tig0040952:4218-4237 Msa1460520:intron 35.0%
TCCAAGATAAGGGTTAAAAG+CGG - tig0040952:4449-4468 None:intergenic 35.0%
GCTAAACTGATCCAAGATAA+GGG - tig0040952:4459-4478 None:intergenic 35.0%
ACTGTATTCACCGTGATTAT+GGG - tig0040952:4722-4741 None:intergenic 35.0%
! TAACAAGCTAGCTTATTAGC+TGG - tig0040952:4770-4789 None:intergenic 35.0%
!! GCTTGTTATGTTTCTGATGA+TGG + tig0040952:4782-4801 Msa1460520:CDS 35.0%
! ATATTTCTGTGATGAAGCCA+TGG + tig0040952:4910-4929 Msa1460520:CDS 35.0%
CAATTCATTATTGTTGGCCA+TGG - tig0040952:4930-4949 None:intergenic 35.0%
TGCCACAATTCAAACATGAT+TGG + tig0040952:4948-4967 Msa1460520:CDS 35.0%
!! CCGGACAATTATTTTGCTTT+TGG - tig0040952:5313-5332 None:intergenic 35.0%
CTAGCATGGTCAAAGAAAAA+AGG - tig0040952:5556-5575 None:intergenic 35.0%
AACCTTTAATGACAGCTGAT+AGG + tig0040952:5588-5607 Msa1460520:intron 35.0%
!! GTTGACATGGAATTGACTTT+TGG - tig0040952:5926-5945 None:intergenic 35.0%
GTCAATTCCATGTCAACTAA+TGG + tig0040952:5929-5948 Msa1460520:CDS 35.0%
AATTCTCCCATTAGTTGACA+TGG - tig0040952:5939-5958 None:intergenic 35.0%
TGACATACCATTATTACCAC+TGG + tig0040952:6109-6128 Msa1460520:intron 35.0%
AATGACTTCAATAATGCCAG+TGG - tig0040952:6128-6147 None:intergenic 35.0%
ATGTATACTGATGTGATGAC+AGG + tig0040952:6167-6186 Msa1460520:intron 35.0%
CCAAACGAGCACTAAATAAT+TGG - tig0040952:6472-6491 None:intergenic 35.0%
CCAATTATTTAGTGCTCGTT+TGG + tig0040952:6469-6488 Msa1460520:intron 35.0%
TTGAGTGAAAAGTGAGTTTG+GGG - tig0040952:6604-6623 None:intergenic 35.0%
CTTTGAGTGAAAAGTGAGTT+TGG - tig0040952:6606-6625 None:intergenic 35.0%
GGAGAATGATAAAGATGTCA+TGG - tig0040952:6709-6728 None:intergenic 35.0%
!! TCTCATGAGTTGATGTTGTT+TGG - tig0040952:7282-7301 None:intergenic 35.0%
!!! TCCGGTAGTTGGTTTTTTTA+AGG + tig0040952:7544-7563 Msa1460520:intron 35.0%
TCTACATATCTAGAGAGAAG+AGG + tig0040952:7663-7682 Msa1460520:CDS 35.0%
!! TTGTGATGATGTGGTTGTTT+TGG - tig0040952:7689-7708 None:intergenic 35.0%
! ATGGTAAATTGACTCACCAT+TGG - tig0040952:8027-8046 None:intergenic 35.0%
GATGCTTCACACTAATAACA+TGG - tig0040952:8046-8065 None:intergenic 35.0%
ATAGTTGGTCATCTTTAGTG+GGG + tig0040952:8130-8149 Msa1460520:intron 35.0%
GATCTCAATACAGTTCTTCT+CGG + tig0040952:8214-8233 Msa1460520:intron 35.0%
TTCTCGGACCAATATAATGT+TGG + tig0040952:8230-8249 Msa1460520:intron 35.0%
GTATTGTAGTACATAGGAAG+TGG + tig0040952:8303-8322 Msa1460520:intron 35.0%
CTTCAAGGGATTATATATGC+TGG + tig0040952:8336-8355 Msa1460520:CDS 35.0%
! GCAAAAATTTGGAACGTCAA+AGG + tig0040952:8617-8636 Msa1460520:CDS 35.0%
!! TCAGCTACTCATATTTTGGA+AGG + tig0040952:8651-8670 Msa1460520:CDS 35.0%
!! CAGCTACTCATATTTTGGAA+GGG + tig0040952:8652-8671 Msa1460520:CDS 35.0%
ACTATGAATACAACACTGCT+TGG + tig0040952:8736-8755 Msa1460520:CDS 35.0%
CTATGAATACAACACTGCTT+GGG + tig0040952:8737-8756 Msa1460520:CDS 35.0%
TATGAATACAACACTGCTTG+GGG + tig0040952:8738-8757 Msa1460520:CDS 35.0%
! TTTGGTAATATTAGGTGGGA+TGG + tig0040952:8937-8956 Msa1460520:intron 35.0%
TATTAGGTGGGATGGTTATA+TGG + tig0040952:8945-8964 Msa1460520:intron 35.0%
GTTATATGGATCAACATCAG+AGG + tig0040952:8959-8978 Msa1460520:CDS 35.0%
TCAAATTCCACATGAAAGGA+TGG + tig0040952:8997-9016 Msa1460520:CDS 35.0%
TGTTCACCACAAGATAACTT+GGG + tig0040952:9062-9081 Msa1460520:CDS 35.0%
TGAAGACCATCTCTTATGTT+GGG - tig0040952:9096-9115 None:intergenic 35.0%
AACATAAGAGATGGTCTTCA+GGG + tig0040952:9096-9115 Msa1460520:CDS 35.0%
! AAATTGGACAATGCTTGCTA+AGG - tig0040952:9136-9155 None:intergenic 35.0%
!! AGCAAGCATTGTCCAATTTT+TGG + tig0040952:9137-9156 Msa1460520:CDS 35.0%
! CCAAATAGGGTACCAAAAAT+TGG - tig0040952:9152-9171 None:intergenic 35.0%
!!! CCAATTTTTGGTACCCTATT+TGG + tig0040952:9149-9168 Msa1460520:CDS 35.0%
!! GAGAGTGCTTGTCATATATT+TGG + tig0040952:9186-9205 Msa1460520:CDS 35.0%
AGATCACAAATAGAGTTGTG+GGG - tig0040952:9422-9441 None:intergenic 35.0%
GTAGATCACAAATAGAGTTG+TGG - tig0040952:9424-9443 None:intergenic 35.0%
CAGGATTATCAATCAGAACA+TGG + tig0040952:9475-9494 Msa1460520:CDS 35.0%
GATTATCAATCAGAACATGG+TGG + tig0040952:9478-9497 Msa1460520:CDS 35.0%
TGCCAAGAAACAAGAATTCA+TGG - tig0040952:9532-9551 None:intergenic 35.0%
! TCATTGGTAACTTCATGAGA+AGG - tig0040952:9627-9646 None:intergenic 35.0%
! GAACCTACCAACATTTTCAT+TGG - tig0040952:9643-9662 None:intergenic 35.0%
!!! TTTTTATGAGTTGGTTGGGA+TGG + tig0040952:9727-9746 Msa1460520:CDS 35.0%
! AAGAGTGGTACTAATGGATA+TGG + tig0040952:9762-9781 Msa1460520:CDS 35.0%
!!! TGCTACTTGCCATTTTTGAA+AGG + tig0040952:9822-9841 Msa1460520:CDS 35.0%
TTGAAAGGATTGTTTGGGAA+AGG + tig0040952:9837-9856 Msa1460520:CDS 35.0%
TACCACCATTGCTAATTGAA+TGG + tig0040952:9932-9951 Msa1460520:exon 35.0%
AACCATTCAATTAGCAATGG+TGG - tig0040952:9937-9956 None:intergenic 35.0%
! GAAGGTGTGATTATTATGGG+AGG - tig0040952:3917-3936 None:intergenic 40.0%
TCACGTAGTCAGTACATCAT+TGG + tig0040952:4206-4225 Msa1460520:intron 40.0%
GTCAGTACATCATTGGTCAT+TGG + tig0040952:4213-4232 Msa1460520:intron 40.0%
ACATCATTGGTCATTGGATC+GGG + tig0040952:4219-4238 Msa1460520:intron 40.0%
!! ACCGCTTTTAACCCTTATCT+TGG + tig0040952:4445-4464 Msa1460520:intron 40.0%
GGCTAAACTGATCCAAGATA+AGG - tig0040952:4460-4479 None:intergenic 40.0%
! CTCAGAATCAGATACCCTTT+TGG - tig0040952:4648-4667 None:intergenic 40.0%
GTTACAAACATGTCCAATGC+TGG - tig0040952:4674-4693 None:intergenic 40.0%
CACTGTATTCACCGTGATTA+TGG - tig0040952:4723-4742 None:intergenic 40.0%
! ACAAGAGCATAGAAGGTAAG+AGG - tig0040952:4815-4834 None:intergenic 40.0%
TCTTACCTTCTATGCTCTTG+TGG + tig0040952:4814-4833 Msa1460520:CDS 40.0%
CACCTATCAGCTGTCATTAA+AGG - tig0040952:5593-5612 None:intergenic 40.0%
TACTGATGTGATGACAGGTT+TGG + tig0040952:6172-6191 Msa1460520:intron 40.0%
!! TCGTTTGGTTCCATGTTTTG+TGG + tig0040952:6484-6503 Msa1460520:intron 40.0%
!!! CGTTTTGAAGCCACAAAACA+TGG - tig0040952:6497-6516 None:intergenic 40.0%
! TGTTTTGTGGCTTCAAAACG+CGG + tig0040952:6497-6516 Msa1460520:intron 40.0%
GCGGTTTATGAATTCAAACG+CGG + tig0040952:6516-6535 Msa1460520:intron 40.0%
!!! CGCGGTTTCACAGTTTTTTA+TGG + tig0040952:6534-6553 Msa1460520:intron 40.0%
AGAAGCGATTCACTTAAACG+TGG + tig0040952:6572-6591 Msa1460520:intron 40.0%
GATTCACTTAAACGTGGTGT+AGG + tig0040952:6578-6597 Msa1460520:intron 40.0%
!! ACTCACTTTTCACTCAAAGC+TGG + tig0040952:6607-6626 Msa1460520:intron 40.0%
GGAATGAAAAATCATCGCTG+TGG - tig0040952:6764-6783 None:intergenic 40.0%
TTAGGGAAGAAGCTGGAATT+GGG + tig0040952:6886-6905 Msa1460520:intron 40.0%
TAAGTGTGTGTTTGGTATGG+CGG - tig0040952:7411-7430 None:intergenic 40.0%
GACTAAGTGTGTGTTTGGTA+TGG - tig0040952:7414-7433 None:intergenic 40.0%
AAAACTACCTACATGGGATC+CGG + tig0040952:7526-7545 Msa1460520:intron 40.0%
TCCACAACGATTCTATGATG+CGG + tig0040952:7963-7982 Msa1460520:CDS 40.0%
TGCTTATGGAAATCAGCTTG+TGG + tig0040952:7996-8015 Msa1460520:CDS 40.0%
! TACATAGGAAGTGGATTTGC+AGG + tig0040952:8312-8331 Msa1460520:CDS 40.0%
CAAAATGCAAAGAAGGGTCA+AGG + tig0040952:8417-8436 Msa1460520:CDS 40.0%
ACATCAGAGGATGTACTAAC+TGG + tig0040952:8972-8991 Msa1460520:CDS 40.0%
CATCAGAGGATGTACTAACT+GGG + tig0040952:8973-8992 Msa1460520:CDS 40.0%
AACAGCCCATAAAGGCTATT+GGG - tig0040952:9046-9065 None:intergenic 40.0%
CTGTTCACCACAAGATAACT+TGG + tig0040952:9061-9080 Msa1460520:CDS 40.0%
ATTTGGCCCAAGTTATCTTG+TGG - tig0040952:9071-9090 None:intergenic 40.0%
ACAAGATAACTTGGGCCAAA+TGG + tig0040952:9070-9089 Msa1460520:CDS 40.0%
ATCTCTTATGTTGGGCCATT+TGG - tig0040952:9088-9107 None:intergenic 40.0%
AAATGGCCCAACATAAGAGA+TGG + tig0040952:9087-9106 Msa1460520:CDS 40.0%
CTGAAGACCATCTCTTATGT+TGG - tig0040952:9097-9116 None:intergenic 40.0%
CAACATAAGAGATGGTCTTC+AGG + tig0040952:9095-9114 Msa1460520:CDS 40.0%
GGATCACTAATTGGGCATTA+AGG + tig0040952:9207-9226 Msa1460520:CDS 40.0%
!! TTGGTAATGATGCAATAGGC+AGG - tig0040952:9263-9282 None:intergenic 40.0%
!! GGAGTTGGTAATGATGCAAT+AGG - tig0040952:9267-9286 None:intergenic 40.0%
AACCTTGTTAGGCAAGAAAC+TGG - tig0040952:9288-9307 None:intergenic 40.0%
TGTGACAATGATGCTCTAAC+AGG + tig0040952:9380-9399 Msa1460520:intron 40.0%
! ATGGTGGAACAACCAAAGAA+TGG + tig0040952:9494-9513 Msa1460520:CDS 40.0%
TGGTGGAACAACCAAAGAAT+GGG + tig0040952:9495-9514 Msa1460520:CDS 40.0%
!! CGAGTCGCTTATTTTTCTAC+CGG + tig0040952:9671-9690 Msa1460520:CDS 40.0%
!! GAGTCGCTTATTTTTCTACC+GGG + tig0040952:9672-9691 Msa1460520:CDS 40.0%
TTAGTACCACTCTTTACCAG+TGG - tig0040952:9756-9775 None:intergenic 40.0%
CTGGTAAAGAGTGGTACTAA+TGG + tig0040952:9756-9775 Msa1460520:CDS 40.0%
!! TTCCCAAGTGATTTGGTCCA+TGG + tig0040952:3777-3796 Msa1460520:exon 45.0%
CTCCATGGACCAAATCACTT+GGG - tig0040952:3782-3801 None:intergenic 45.0%
TCTCCATGGACCAAATCACT+TGG - tig0040952:3783-3802 None:intergenic 45.0%
!!! GAGGGAAGTTTTGTTCTCCA+TGG - tig0040952:3797-3816 None:intergenic 45.0%
AGTCATGGTTTACCACCACT+TGG + tig0040952:3962-3981 Msa1460520:CDS 45.0%
TTACCACCATGAGCACCAAA+TGG + tig0040952:3986-4005 Msa1460520:CDS 45.0%
!! AGGAAGGTTTTGGTATGTGC+AGG - tig0040952:4015-4034 None:intergenic 45.0%
! TTCCACCATTGTGTTGACCT+TGG + tig0040952:4330-4349 Msa1460520:intron 45.0%
ATCCAAGGTCAACACAATGG+TGG - tig0040952:4335-4354 None:intergenic 45.0%
TGCATCCAAGGTCAACACAA+TGG - tig0040952:4338-4357 None:intergenic 45.0%
ATTACAACAAAGAGGGGCTG+AGG + tig0040952:4366-4385 Msa1460520:intron 45.0%
TTACAACAAAGAGGGGCTGA+GGG + tig0040952:4367-4386 Msa1460520:intron 45.0%
ATCAGTTTAGCCAATCGACC+CGG + tig0040952:4468-4487 Msa1460520:intron 45.0%
ATATACCATACCGGGTCGAT+TGG - tig0040952:4481-4500 None:intergenic 45.0%
TGATTCTGAGCTTCCAGCAT+TGG + tig0040952:4658-4677 Msa1460520:CDS 45.0%
!! ATTATGGGTGGTTCTAGCAC+TGG - tig0040952:4707-4726 None:intergenic 45.0%
GCTAGAACCACCCATAATCA+CGG + tig0040952:4709-4728 Msa1460520:CDS 45.0%
GTATTCACCGTGATTATGGG+TGG - tig0040952:4719-4738 None:intergenic 45.0%
ATGTGATGACAGGTTTGGCT+TGG + tig0040952:6177-6196 Msa1460520:intron 45.0%
! TGTGATGACAGGTTTGGCTT+GGG + tig0040952:6178-6197 Msa1460520:intron 45.0%
!!! GGTAGGGCCGGTTTTTTTAT+TGG + tig0040952:6199-6218 Msa1460520:intron 45.0%
GCTGGAATTTGTAGCTTCTG+CGG + tig0040952:6625-6644 Msa1460520:intron 45.0%
CTTCTGCGGCAATTGAAACT+CGG + tig0040952:6639-6658 Msa1460520:intron 45.0%
CTCTCTCTTTCTCCAGGTTA+GGG + tig0040952:6869-6888 Msa1460520:intron 45.0%
GTTAGGGAAGAAGCTGGAAT+TGG + tig0040952:6885-6904 Msa1460520:intron 45.0%
CAACCACATCATCACAAAGC+TGG + tig0040952:7692-7711 Msa1460520:CDS 45.0%
AGCTGGTGCAATGAATGTCT+TGG + tig0040952:7709-7728 Msa1460520:CDS 45.0%
GTGTTACAGACAAGAGTCTC+TGG + tig0040952:7808-7827 Msa1460520:intron 45.0%
! GCATGCCCTTTGCATTTTGT+TGG + tig0040952:7903-7922 Msa1460520:CDS 45.0%
ACCGCATCATAGAATCGTTG+TGG - tig0040952:7967-7986 None:intergenic 45.0%
GCGGTCAAAGATGATGCTTA+TGG + tig0040952:7982-8001 Msa1460520:CDS 45.0%
! AGTGGATTTGCAGGACTTCA+AGG + tig0040952:8321-8340 Msa1460520:CDS 45.0%
GTGGATTTGCAGGACTTCAA+GGG + tig0040952:8322-8341 Msa1460520:CDS 45.0%
TCATCTCACTAAAGCCCTCT+TGG - tig0040952:8851-8870 None:intergenic 45.0%
GGGCTCAAATTCCACATGAA+AGG + tig0040952:8993-9012 Msa1460520:CDS 45.0%
ACCAGACCCAATAGCCTTTA+TGG + tig0040952:9037-9056 Msa1460520:CDS 45.0%
CCAGACCCAATAGCCTTTAT+GGG + tig0040952:9038-9057 Msa1460520:CDS 45.0%
GAACAGCCCATAAAGGCTAT+TGG - tig0040952:9047-9066 None:intergenic 45.0%
TTGTGGTGAACAGCCCATAA+AGG - tig0040952:9054-9073 None:intergenic 45.0%
GTTAGGCAAGAAACTGGAGT+TGG - tig0040952:9282-9301 None:intergenic 45.0%
CTCCAGTTTCTTGCCTAACA+AGG + tig0040952:9283-9302 Msa1460520:CDS 45.0%
TCTAACAGGAACTCAGCATG+TGG + tig0040952:9394-9413 Msa1460520:intron 45.0%
ACAAGCAAAATTGTCGTGCC+CGG - tig0040952:9693-9712 None:intergenic 45.0%
TGGAAACCACTGGTAAAGAG+TGG + tig0040952:9747-9766 Msa1460520:CDS 45.0%
! GGTACTAATGGATATGGAGC+AGG + tig0040952:9768-9787 Msa1460520:CDS 45.0%
! TAATGGATATGGAGCAGGAG+AGG + tig0040952:9773-9792 Msa1460520:CDS 45.0%
!!! CTTTTTTAATATATATTTTT+TGG + tig0040952:5148-5167 Msa1460520:intron 5.0%
AACCAAGAAGCAAGAGGAGG+AGG - tig0040952:3885-3904 None:intergenic 50.0%
GGTAACCAAGAAGCAAGAGG+AGG - tig0040952:3888-3907 None:intergenic 50.0%
CTCGGTAACCAAGAAGCAAG+AGG - tig0040952:3891-3910 None:intergenic 50.0%
CATGGTGGTAATCCAAGTGG+TGG - tig0040952:3977-3996 None:intergenic 50.0%
GCTCATGGTGGTAATCCAAG+TGG - tig0040952:3980-3999 None:intergenic 50.0%
!! AGTCCATTTGGTGCTCATGG+TGG - tig0040952:3992-4011 None:intergenic 50.0%
!! AGGAGTCCATTTGGTGCTCA+TGG - tig0040952:3995-4014 None:intergenic 50.0%
GGTATGTGCAGGAGTCCATT+TGG - tig0040952:4004-4023 None:intergenic 50.0%
! GAGGCGATCTAGGAAGGTTT+TGG - tig0040952:4025-4044 None:intergenic 50.0%
AAGCAAGAGGCGATCTAGGA+AGG - tig0040952:4031-4050 None:intergenic 50.0%
TCCTAGATCGCCTCTTGCTT+AGG + tig0040952:4031-4050 Msa1460520:CDS 50.0%
ACCTAAGCAAGAGGCGATCT+AGG - tig0040952:4035-4054 None:intergenic 50.0%
TTTAGCCAATCGACCCGGTA+TGG + tig0040952:4473-4492 Msa1460520:intron 50.0%
! GGCTTCCACAAGAGCATAGA+AGG - tig0040952:4822-4841 None:intergenic 50.0%
!! ATGACAGGTTTGGCTTGGGT+AGG + tig0040952:6182-6201 Msa1460520:intron 50.0%
!! TGACAGGTTTGGCTTGGGTA+GGG + tig0040952:6183-6202 Msa1460520:intron 50.0%
GCGGCAATTGAAACTCGGTT+TGG + tig0040952:6644-6663 Msa1460520:intron 50.0%
CTGCAACTGAAGGCTAAGCA+AGG - tig0040952:6833-6852 None:intergenic 50.0%
! TGGAGAAAGAGAGAGCATGC+AGG - tig0040952:6864-6883 None:intergenic 50.0%
TGCATGCTCTCTCTTTCTCC+AGG + tig0040952:6863-6882 Msa1460520:intron 50.0%
GCTCTCTCTTTCTCCAGGTT+AGG + tig0040952:6868-6887 Msa1460520:intron 50.0%
TTCCAGCTTCTTCCCTAACC+TGG - tig0040952:6884-6903 None:intergenic 50.0%
! GCACCAGCTTTGTGATGATG+TGG - tig0040952:7698-7717 None:intergenic 50.0%
! TCAGCTTGTGGCTTTGCCAA+TGG + tig0040952:8008-8027 Msa1460520:CDS 50.0%
AAGGGTCAAGGCTTCACCAA+TGG + tig0040952:8429-8448 Msa1460520:CDS 50.0%
CAACACTGCTTGGGGTAAAC+AGG + tig0040952:8746-8765 Msa1460520:CDS 50.0%
ACTGCTTGGGGTAAACAGGT+GGG + tig0040952:8750-8769 Msa1460520:intron 50.0%
GGGGTAAACAGGTGGGAAAT+AGG + tig0040952:8757-8776 Msa1460520:intron 50.0%
CAGATCGCCATCCTTTCATG+TGG - tig0040952:9007-9026 None:intergenic 50.0%
CCCATAAAGGCTATTGGGTC+TGG - tig0040952:9041-9060 None:intergenic 50.0%
TTGGTTGGGATGGAAACCAC+TGG + tig0040952:9737-9756 Msa1460520:CDS 50.0%
CTCCTCCTCCTCTTGCTTCT+TGG + tig0040952:3880-3899 Msa1460520:CDS 55.0%
GGTTGCAGCTCTGCAACTGA+AGG - tig0040952:6843-6862 None:intergenic 55.0%
CTCCAGGTTAGGGAAGAAGC+TGG + tig0040952:6879-6898 Msa1460520:intron 55.0%
GTGTGTGTTTGGTATGGCGG+TGG - tig0040952:7408-7427 None:intergenic 55.0%
CCAACTACCGGATCCCATGT+AGG - tig0040952:7536-7555 None:intergenic 55.0%
CCTACATGGGATCCGGTAGT+TGG + tig0040952:7533-7552 Msa1460520:intron 55.0%
CACTGCTTGGGGTAAACAGG+TGG + tig0040952:8749-8768 Msa1460520:intron 55.0%
!! AGGTTTGGCTTGGGTAGGGC+CGG + tig0040952:6187-6206 Msa1460520:intron 60.0%
Chromosome Type Strat End Strand Name
tig0040952 gene 3745 10119 3745 ID=Msa1460520;Name=Msa1460520
tig0040952 mRNA 3745 10119 3745 ID=Msa1460520-mRNA-1;Parent=Msa1460520;Name=Msa1460520-mRNA-1;_AED=0.16;_eAED=0.16;_QI=51|1|1|1|1|1|9|169|753
tig0040952 exon 3745 4052 3745 ID=Msa1460520-mRNA-1:exon:22774;Parent=Msa1460520-mRNA-1
tig0040952 exon 4652 4982 4652 ID=Msa1460520-mRNA-1:exon:22775;Parent=Msa1460520-mRNA-1
tig0040952 exon 5882 6007 5882 ID=Msa1460520-mRNA-1:exon:22776;Parent=Msa1460520-mRNA-1
tig0040952 exon 7617 7730 7617 ID=Msa1460520-mRNA-1:exon:22777;Parent=Msa1460520-mRNA-1
tig0040952 exon 7817 8029 7817 ID=Msa1460520-mRNA-1:exon:22778;Parent=Msa1460520-mRNA-1
tig0040952 exon 8312 8450 8312 ID=Msa1460520-mRNA-1:exon:22779;Parent=Msa1460520-mRNA-1
tig0040952 exon 8589 8767 8589 ID=Msa1460520-mRNA-1:exon:22780;Parent=Msa1460520-mRNA-1
tig0040952 exon 8951 9304 8951 ID=Msa1460520-mRNA-1:exon:22781;Parent=Msa1460520-mRNA-1
tig0040952 exon 9402 10119 9402 ID=Msa1460520-mRNA-1:exon:22782;Parent=Msa1460520-mRNA-1
tig0040952 five_prime_UTR 3745 3795 3745 ID=Msa1460520-mRNA-1:five_prime_utr;Parent=Msa1460520-mRNA-1
tig0040952 CDS 3796 4052 3796 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 CDS 4652 4982 4652 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 CDS 5882 6007 5882 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 CDS 7617 7730 7617 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 CDS 7817 8029 7817 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 CDS 8312 8450 8312 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 CDS 8589 8767 8589 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 CDS 8951 9304 8951 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 CDS 9402 9950 9402 ID=Msa1460520-mRNA-1:cds;Parent=Msa1460520-mRNA-1
tig0040952 three_prime_UTR 9951 10119 9951 ID=Msa1460520-mRNA-1:three_prime_utr;Parent=Msa1460520-mRNA-1
Gene Sequence

>Msa1460520

ATGGAGAACAAAACTTCCCTCCCTCTCTATGAAAAAATATGGGTCAAACACACATTTTCAAGAGTTATGGATTCTTTGACATTGCTCCTCCTCCTCTTGCTTCTTGGTTACCGAGTTTCCTCCCATAATAATCACACCTTCCCTTGCTTTATTGCATTTTTATGTGAGTCATGGTTTACCACCACTTGGATTACCACCATGAGCACCAAATGGACTCCTGCACATACCAAAACCTTCCTAGATCGCCTCTTGCTTAGGGTATCTGATTCTGAGCTTCCAGCATTGGACATGTTTGTAACAACGGCAGATCCAGTGCTAGAACCACCCATAATCACGGTGAATACAGTGTTATCATTGTTGGCACTTGATTATCCAGCTAATAAGCTAGCTTGTTATGTTTCTGATGATGGTTGTTCACCTCTTACCTTCTATGCTCTTGTGGAAGCCTCTAAATTTGCTGAAATTTGGGTACCATTTTGTAAGAAGTACAATGTACAATGTAGAGCACCATTTAGATATTTCTGTGATGAAGCCATGGCCAACAATAATGAATTGCCACAATTCAAACATGATTGGTTGAAAATGAAGGAAGAGTATGAACAACTTAGTAGCAAAATTCAAAATGCAGCCCAAAAGTCAATTCCATGTCAACTAATGGGAGAATTTGCTGTCTTCTCACAAACACAAGCAAGAAATCATCCAACTATAATCAAGGTAATTCGAGAAAACAAAGATATTTCTGATGTGATGCCTCACATTATCTACATATCTAGAGAGAAGAGGCCAAAACAACCACATCATCACAAAGCTGGTGCAATGAATGTCTTGACAAGAGTCTCTGGATTGATGACAAATGCTCCCTTTATCCTAAACTTAGATTGTGACATGTATGTGAACAATTCTAAGATCGTATTGCATGCCCTTTGCATTTTGTTGGATTCAAAGGGAGAAAAAGAAGTTGCATTTGCTCAATGTCCACAACGATTCTATGATGCGGTCAAAGATGATGCTTATGGAAATCAGCTTGTGGCTTTGCCAATGTACATAGGAAGTGGATTTGCAGGACTTCAAGGGATTATATATGCTGGAACAAATTGCTTTCATAGAAGAAAAGTTATGTATGGTCTTTCTCCTCATAATGAAATTCAAAATGCAAAGAAGGGTCAAGGCTTCACCAATGGAACGTTTTTATCAGAAAAAGAAACAATGCAAAAATTTGGAACGTCAAAGGGATTTGTTGAATCAGCTACTCATATTTTGGAAGGGACTACATCTGACCTTTACAAATCTCTTGATCTTGAAGCAGCAAGCAAAGTTGCTAGTTGTGACTATGAATACAACACTGCTTGGGGTAAACAGGTGGGATGGTTATATGGATCAACATCAGAGGATGTACTAACTGGGCTCAAATTCCACATGAAAGGATGGCGATCTGAGCTTTGTTCACCAGACCCAATAGCCTTTATGGGCTGTTCACCACAAGATAACTTGGGCCAAATGGCCCAACATAAGAGATGGTCTTCAGGGTTGTTTGATATCTTCCTTAGCAAGCATTGTCCAATTTTTGGTACCCTATTTGGTAAGCTAGAATTTAGAGAGTGCTTGTCATATATTTGGATCACTAATTGGGCATTAAGGTCTGTTCCTGAAATATGTTATGCTCTTCTACCTGCCTATTGCATCATTACCAACTCCAGTTTCTTGCCTAACAAGGAACTCAGCATGTGGATCCCCACAACTCTATTTGTGATCTACAACATATCTAATATAATAGAGCACATAAAATCAGGATTATCAATCAGAACATGGTGGAACAACCAAAGAATGGGAAGAATAACAACCATGAATTCTTGTTTCTTGGCATTCTTAACCATCATACTTAAGCAATTGAGAATATCAGACACCAATTTTGAAATAACAAAGAAAGAACAAGTACCTTCTCATGAAGTTACCAATGAAAATGTTGGTAGGTTCATTTTTAACGAGTCGCTTATTTTTCTACCGGGCACGACAATTTTGCTTGTTCAACTCATAGCAATTTTTATGAGTTGGTTGGGATGGAAACCACTGGTAAAGAGTGGTACTAATGGATATGGAGCAGGAGAGGTTTTTTGTAGTGCATATGTTGTTTTATGCTACTTGCCATTTTTGAAAGGATTGTTTGGGAAAGGAAAATATGGCATACCCTTGTCTACAATATGCAAATCATTGGTGCTAGCTTTACTATTTGTTCATTTATGTAGTACCACCATTGCTAATTGA
Protein sequence

>Msa1460520

MENKTSLPLYEKIWVKHTFSRVMDSLTLLLLLLLLGYRVSSHNNHTFPCFIAFLCESWFTTTWITTMSTKWTPAHTKTFLDRLLLRVSDSELPALDMFVTTADPVLEPPIITVNTVLSLLALDYPANKLACYVSDDGCSPLTFYALVEASKFAEIWVPFCKKYNVQCRAPFRYFCDEAMANNNELPQFKHDWLKMKEEYEQLSSKIQNAAQKSIPCQLMGEFAVFSQTQARNHPTIIKVIRENKDISDVMPHIIYISREKRPKQPHHHKAGAMNVLTRVSGLMTNAPFILNLDCDMYVNNSKIVLHALCILLDSKGEKEVAFAQCPQRFYDAVKDDAYGNQLVALPMYIGSGFAGLQGIIYAGTNCFHRRKVMYGLSPHNEIQNAKKGQGFTNGTFLSEKETMQKFGTSKGFVESATHILEGTTSDLYKSLDLEAASKVASCDYEYNTAWGKQVGWLYGSTSEDVLTGLKFHMKGWRSELCSPDPIAFMGCSPQDNLGQMAQHKRWSSGLFDIFLSKHCPIFGTLFGKLEFRECLSYIWITNWALRSVPEICYALLPAYCIITNSSFLPNKELSMWIPTTLFVIYNISNIIEHIKSGLSIRTWWNNQRMGRITTMNSCFLAFLTIILKQLRISDTNFEITKKEQVPSHEVTNENVGRFIFNESLIFLPGTTILLVQLIAIFMSWLGWKPLVKSGTNGYGAGEVFCSAYVVLCYLPFLKGLFGKGKYGIPLSTICKSLVLALLFVHLCSTTIAN*