AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0543640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0543640 MtrunA17_Chr4g0023911 87.952 581 33 2 1 545 1 580 0.0 1046
Msa0543640 MtrunA17_Chr2g0310331 44.909 550 256 8 35 544 42 584 7.18e-150 442
Msa0543640 MtrunA17_Chr8g0357411 41.039 558 278 9 32 544 36 587 1.13e-131 395
Msa0543640 MtrunA17_Chr2g0310401 43.925 428 200 4 155 544 5 430 4.63e-116 350
Msa0543640 MtrunA17_Chr4g0042111 35.676 555 313 6 31 543 7 559 3.45e-113 347
Msa0543640 MtrunA17_Chr2g0323131 38.136 472 245 6 90 523 82 544 5.90e-103 321
Msa0543640 MtrunA17_Chr2g0323151 38.925 465 238 6 96 523 4 459 2.07e-101 314
Msa0543640 MtrunA17_Chr4g0024691 34.601 552 316 9 35 544 11 559 4.05e-101 316
Msa0543640 MtrunA17_Chr6g0451711 33.213 554 322 6 35 544 6 555 1.20e-100 315
Msa0543640 MtrunA17_Chr6g0465441 33.394 548 323 7 38 544 5 551 7.29e-100 312
Msa0543640 MtrunA17_Chr7g0237001 33.761 545 314 7 43 544 11 551 1.97e-99 311
Msa0543640 MtrunA17_Chr7g0237041 33.761 545 314 7 43 544 11 551 1.97e-99 311
Msa0543640 MtrunA17_Chr7g0237081 33.761 545 314 7 43 544 11 551 1.97e-99 311
Msa0543640 MtrunA17_Chr7g0237051 33.761 545 314 7 43 544 11 551 1.97e-99 311
Msa0543640 MtrunA17_Chr6g0466051 33.942 548 320 7 38 544 5 551 7.41e-99 310
Msa0543640 MtrunA17_Chr7g0236991 33.578 545 315 7 43 544 11 551 7.49e-99 310
Msa0543640 MtrunA17_Chr6g0465911 33.942 548 320 7 38 544 5 551 1.16e-98 309
Msa0543640 MtrunA17_Chr2g0319051 36.914 512 269 13 81 545 9 513 6.02e-98 306
Msa0543640 MtrunA17_Chr5g0425371 32.472 542 325 5 43 544 11 551 3.70e-96 303
Msa0543640 MtrunA17_Chr3g0082691 33.889 540 315 6 46 544 13 551 1.21e-95 301
Msa0543640 MtrunA17_Chr7g0237011 34.845 485 279 4 96 544 13 496 3.73e-95 298
Msa0543640 MtrunA17_Chr6g0465851 34.241 514 298 5 70 544 4 516 1.39e-94 298
Msa0543640 MtrunA17_Chr7g0236961 34.639 485 280 4 96 544 13 496 2.11e-94 296
Msa0543640 MtrunA17_Chr3g0105071 33.153 555 329 5 31 544 2 555 4.07e-93 295
Msa0543640 MtrunA17_Chr2g0319041 34.054 555 317 13 37 545 5 556 2.00e-91 291
Msa0543640 MtrunA17_Chr5g0431651 33.574 554 311 9 40 544 5 550 4.40e-90 287
Msa0543640 MtrunA17_Chr8g0336181 33.515 549 308 11 46 544 13 554 1.33e-87 281
Msa0543640 MtrunA17_Chr5g0431571 34.070 543 310 7 46 544 9 547 2.28e-87 280
Msa0543640 MtrunA17_Chr6g0465981 40.379 369 214 4 38 401 5 372 1.62e-83 264
Msa0543640 MtrunA17_Chr6g0465871 40.379 369 214 4 38 401 5 372 1.62e-83 264
Msa0543640 MtrunA17_Chr6g0466081 40.379 369 214 4 38 401 5 372 1.62e-83 264
Msa0543640 MtrunA17_Chr4g0048911 33.588 524 270 15 72 540 54 554 1.86e-81 265
Msa0543640 MtrunA17_Chr6g0466111 41.493 335 192 2 70 401 4 337 4.68e-79 251
Msa0543640 MtrunA17_Chr6g0465931 41.493 335 192 2 70 401 4 337 4.94e-79 251
Msa0543640 MtrunA17_Chr7g0237031 44.444 288 156 2 96 380 13 299 3.03e-77 246
Msa0543640 MtrunA17_Chr7g0236951 44.097 288 157 2 96 380 13 299 1.84e-76 244
Msa0543640 MtrunA17_Chr4g0008621 35.572 402 238 9 45 432 20 414 9.37e-76 246
Msa0543640 MtrunA17_Chr7g0236971 33.500 400 229 4 181 544 1 399 8.16e-72 234
Msa0543640 MtrunA17_Chr2g0280581 31.610 503 289 11 70 521 2 500 1.16e-66 224
Msa0543640 MtrunA17_Chr4g0048921 31.950 482 280 8 86 525 77 552 7.91e-66 224
Msa0543640 MtrunA17_Chr7g0217361 38.206 301 148 3 280 543 8 307 7.33e-64 211
Msa0543640 MtrunA17_Chr3g0108981 31.635 471 270 8 98 521 6 471 1.51e-63 216
Msa0543640 MtrunA17_Chr3g0108961 31.635 471 270 8 98 521 6 471 1.51e-63 216
Msa0543640 MtrunA17_Chr3g0109031 30.444 496 299 8 70 521 2 495 1.82e-63 216
Msa0543640 MtrunA17_Chr3g0108941 30.140 501 295 11 70 521 2 496 1.16e-62 214
Msa0543640 MtrunA17_Chr3g0109001 30.339 501 294 11 70 521 2 496 1.94e-62 213
Msa0543640 MtrunA17_Chr3g0108991 29.980 497 300 10 70 521 2 495 6.40e-62 212
Msa0543640 MtrunA17_Chr3g0108951 29.980 497 300 10 70 521 2 495 6.40e-62 212
Msa0543640 MtrunA17_Chr3g0109011 30.983 468 276 9 98 521 6 470 8.54e-62 211
Msa0543640 MtrunA17_Chr3g0105691 30.020 503 296 11 68 521 33 528 1.13e-61 212
Msa0543640 MtrunA17_Chr3g0109021 29.779 497 301 10 70 521 2 495 7.70e-61 209
Msa0543640 MtrunA17_Chr3g0108971 30.769 468 277 9 98 521 6 470 6.03e-60 206
Msa0543640 MtrunA17_Chr6g0477111 30.556 468 278 9 98 521 6 470 7.65e-60 206
Msa0543640 MtrunA17_Chr3g0099031 29.480 519 310 14 70 540 2 512 3.04e-57 199
Msa0543640 MtrunA17_Chr5g0445511 40.586 239 141 1 177 415 2 239 4.59e-55 185
Msa0543640 MtrunA17_Chr8g0357221 40.927 259 141 5 32 282 36 290 5.28e-53 182
Msa0543640 MtrunA17_Chr6g0477121 31.450 407 233 8 158 521 10 413 9.05e-53 185
Msa0543640 MtrunA17_Chr8g0357231 37.597 258 123 3 324 544 1 257 3.70e-50 173
Msa0543640 MtrunA17_Chr2g0319071 29.448 489 260 12 96 545 46 488 1.52e-48 175
Msa0543640 MtrunA17_Chr7g0237071 40.513 195 113 1 96 287 13 207 1.78e-38 140
Msa0543640 MtrunA17_Chr2g0319081 30.897 301 154 9 283 544 140 425 1.46e-36 140
Msa0543640 MtrunA17_Chr3g0101681 27.778 450 262 13 96 486 277 722 6.09e-36 143
Msa0543640 MtrunA17_Chr2g0310121 29.167 360 230 9 96 433 276 632 8.63e-36 142
Msa0543640 MtrunA17_Chr6g0466021 40.526 190 109 2 43 228 11 200 1.42e-33 126
Msa0543640 MtrunA17_Chr7g0217351 38.542 192 110 4 96 283 86 273 6.29e-30 119
Msa0543640 MtrunA17_Chr7g0237061 30.769 234 149 3 324 544 2 235 6.64e-29 114
Msa0543640 MtrunA17_Chr6g0466031 26.848 257 152 3 324 544 2 258 7.13e-27 109
Msa0543640 MtrunA17_Chr7g0218001 27.042 355 217 10 98 417 349 696 2.72e-24 107
Msa0543640 MtrunA17_Chr7g0233861 36.301 146 83 1 210 355 22 157 3.94e-23 96.7
Msa0543640 MtrunA17_Chr7g0259881 27.636 275 158 9 98 339 232 498 2.59e-22 101
Msa0543640 MtrunA17_Chr2g0281651 35.028 177 108 5 258 432 43 214 1.77e-21 97.1
Msa0543640 MtrunA17_Chr2g0310411 41.593 113 58 4 46 156 58 164 5.41e-18 81.6
Msa0543640 MtrunA17_Chr7g0218041 26.299 308 185 10 143 417 1 299 6.13e-14 73.9
Msa0543640 MtrunA17_Chr5g0445401 44.792 96 44 3 194 285 4 94 9.27e-12 61.6
Msa0543640 MtrunA17_Chr2g0281721 33.981 103 67 1 255 357 26 127 3.13e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0543640 AT3G25820.1 40.395 557 277 11 39 544 40 592 3.56e-135 405
Msa0543640 AT3G25830.1 40.395 557 277 11 39 544 40 592 3.56e-135 405
Msa0543640 AT4G16740.1 40.809 544 270 9 46 544 26 562 7.19e-134 401
Msa0543640 AT3G25810.1 40.608 559 264 13 45 544 46 595 3.42e-132 398
Msa0543640 AT2G24210.1 40.429 559 271 13 39 544 39 588 2.76e-131 395
Msa0543640 AT4G16730.1 36.940 536 283 10 61 544 5 537 9.44e-122 369
Msa0543640 AT4G16730.2 38.259 494 255 8 98 544 1 491 1.06e-118 359
Msa0543640 AT3G25820.2 41.388 418 226 8 8 415 14 422 6.36e-98 304
Msa0543640 AT4G16740.2 44.173 369 187 6 46 402 26 387 4.98e-94 293
Msa0543640 AT5G23960.2 32.418 546 313 10 46 544 7 543 1.43e-83 270
Msa0543640 AT5G23960.1 32.299 548 313 12 46 544 7 545 1.19e-81 265
Msa0543640 AT4G16740.4 42.442 344 179 6 46 377 26 362 2.78e-79 254
Msa0543640 AT4G16740.3 42.442 344 179 6 46 377 26 362 2.78e-79 254
Msa0543640 AT3G29410.2 31.417 487 293 7 96 544 13 496 2.09e-78 255
Msa0543640 AT3G29410.1 29.690 549 341 9 38 544 56 601 2.02e-77 256
Msa0543640 AT1G70080.1 32.271 502 281 11 94 545 118 610 5.59e-77 254
Msa0543640 AT3G25820.4 42.813 327 173 7 39 355 40 362 5.44e-76 246
Msa0543640 AT3G25820.3 42.813 327 173 7 39 355 40 362 5.44e-76 246
Msa0543640 AT1G33750.1 29.412 578 358 10 12 544 29 601 1.89e-72 242
Msa0543640 AT3G14490.1 29.302 587 354 13 11 544 21 599 3.77e-71 239
Msa0543640 AT1G31950.1 28.913 543 335 10 48 544 67 604 7.29e-69 233
Msa0543640 AT1G61680.1 30.417 480 287 7 96 534 94 567 9.85e-69 232
Msa0543640 AT1G31950.3 28.676 544 336 10 48 544 67 605 1.67e-68 232
Msa0543640 AT3G14540.1 28.546 557 339 12 38 544 52 599 1.39e-67 229
Msa0543640 AT3G14520.1 28.007 557 342 11 38 544 55 602 8.70e-67 227
Msa0543640 AT5G44630.1 30.912 537 310 12 62 544 26 555 4.13e-66 224
Msa0543640 AT1G61680.2 29.792 480 283 8 96 534 94 560 5.91e-65 221
Msa0543640 AT4G15870.1 29.592 588 344 17 6 544 30 596 2.19e-64 221
Msa0543640 AT1G48800.1 28.623 552 327 12 46 542 63 602 5.54e-59 206
Msa0543640 AT3G32030.1 26.306 555 356 11 37 544 54 602 3.59e-58 204
Msa0543640 AT4G20230.1 29.399 466 284 9 105 529 126 587 4.74e-57 201
Msa0543640 AT4G20230.2 29.399 466 284 9 105 529 138 599 5.08e-57 201
Msa0543640 AT4G20210.1 28.442 552 331 14 46 544 58 598 3.06e-56 199
Msa0543640 AT1G48820.1 28.956 594 312 19 3 539 17 557 2.09e-55 196
Msa0543640 AT1G31950.2 29.592 392 263 5 48 430 67 454 2.82e-55 194
Msa0543640 AT3G14540.2 30.542 406 260 8 38 430 52 448 5.68e-55 193
Msa0543640 AT3G29190.1 28.081 495 313 8 90 544 108 599 5.98e-54 192
Msa0543640 AT4G13300.1 28.794 514 312 13 80 545 46 553 8.76e-53 188
Msa0543640 AT4G20200.1 27.621 496 316 8 90 545 111 603 1.34e-52 189
Msa0543640 AT2G23230.2 26.445 571 369 12 23 545 32 599 2.71e-52 188
Msa0543640 AT2G23230.1 26.842 570 363 13 23 545 32 594 2.06e-51 186
Msa0543640 AT4G13280.1 29.621 449 299 8 108 544 79 522 2.93e-50 181
Msa0543640 AT1G66020.1 27.968 497 313 8 90 545 105 597 3.98e-50 182
Msa0543640 AT4G13280.2 28.184 479 297 10 108 544 79 552 1.14e-48 177
Msa0543640 AT3G29110.1 26.325 566 367 9 25 544 34 595 1.00e-47 175
Msa0543640 AT5G48110.1 28.739 341 203 8 241 545 2 338 5.67e-38 143
Msa0543640 AT1G66020.2 34.146 287 180 6 90 371 105 387 1.30e-37 144
Msa0543640 AT1G79460.1 26.408 515 303 16 96 545 275 778 1.59e-34 139
Msa0543640 AT1G61120.1 27.233 459 263 14 90 489 280 726 1.07e-30 127
Msa0543640 AT4G02780.1 31.111 270 145 10 98 334 334 595 5.42e-22 100

Find 196 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTACCAACCCAATATT+TGG 0.147243 4_1:-30203550 Msa0543640:CDS
CCAAATATTGGGTTGGTAAT+TGG 0.157698 4_1:+30203550 None:intergenic
CGATTCTTTGCTAAGGTATC+AGG 0.160074 4_1:+30199272 None:intergenic
GATGACATTTATGATGTTTA+TGG 0.162881 4_1:-30201330 Msa0543640:CDS
ATGAAACTGCCTTAAGATTT+AGG 0.186680 4_1:-30203185 Msa0543640:CDS
AAAATTTGCTTAATGAAAAT+TGG 0.190627 4_1:-30199415 Msa0543640:CDS
AATTGTTTGAATTAATTAAT+TGG 0.198474 4_1:+30199227 None:intergenic
TTGAGGTAGTCATCAAATTT+TGG 0.199877 4_1:+30200193 None:intergenic
GATATCGTAATTCCAAATAT+TGG 0.205792 4_1:+30203538 None:intergenic
CTATGTTGAGCTTGTTTATT+GGG 0.210115 4_1:-30198602 Msa0543640:three_prime_UTR
TTATGAAGGAGAACAAATTT+TGG 0.215009 4_1:-30202363 Msa0543640:CDS
ATTGGATGAATTGTATATTA+TGG 0.217701 4_1:+30203716 None:intergenic
TATAGGCATATTTGTGTCTT+TGG 0.217877 4_1:+30203789 None:intergenic
CACAATGTTGAAATTCAATT+TGG 0.223651 4_1:+30202151 None:intergenic
ACTATGTTGAGCTTGTTTAT+TGG 0.249379 4_1:-30198603 Msa0543640:three_prime_UTR
GGCTAATGGAATGTTTCTTT+TGG 0.253920 4_1:-30201437 Msa0543640:CDS
TTGTATCATAAAATAAATAT+TGG 0.256017 4_1:-30199071 Msa0543640:three_prime_UTR
ACGCATCTGATATCTATATA+AGG 0.258787 4_1:+30198808 None:intergenic
GTAAATTATTATTAATTTGT+AGG 0.267745 4_1:+30199013 None:intergenic
GAAACTAGGAAGTGAGTTAA+AGG 0.269615 4_1:+30203679 None:intergenic
TTAACATTCCTTTGATATCT+TGG 0.275349 4_1:+30202411 None:intergenic
TTTAGGCTCCATCGAGAATA+TGG 0.288232 4_1:-30203168 Msa0543640:CDS
TGTTGTGAGTATTAGCCTTT+GGG 0.292690 4_1:-30198572 Msa0543640:three_prime_UTR
TTAGTTTGTGAGTTAGAATA+GGG 0.294257 4_1:-30198877 Msa0543640:three_prime_UTR
CATGATCTTCAGAATAATTC+AGG 0.299447 4_1:+30198133 None:intergenic
TGCTCGGCAGTTACGGTTGC+GGG 0.306650 4_1:-30198761 Msa0543640:three_prime_UTR
TGTATCATAAAATAAATATT+GGG 0.307711 4_1:-30199070 Msa0543640:three_prime_UTR
GTTGAAGAAAATTGTACCTT+TGG 0.326002 4_1:-30198847 Msa0543640:three_prime_UTR
ATATCGTAATTCCAAATATT+GGG 0.331518 4_1:+30203539 None:intergenic
CGCATCTGATATCTATATAA+GGG 0.337407 4_1:+30198809 None:intergenic
GTATATGAAGATATTCTTCT+TGG 0.341174 4_1:-30201035 Msa0543640:CDS
TGTCAAAGAAATAGAAATAA+AGG 0.341485 4_1:-30199179 Msa0543640:three_prime_UTR
TAATGCAATTCAAATTCTTC+CGG 0.348756 4_1:-30201059 Msa0543640:CDS
TACCTTCACTAAGGTCTTTG+AGG 0.350003 4_1:+30202312 None:intergenic
TGCAGTGGTTCAAACAATAT+TGG 0.363548 4_1:-30203219 Msa0543640:CDS
AAGCTACAACTATGTCTCTA+TGG 0.363897 4_1:-30197990 Msa0543640:three_prime_UTR
TTGAAGAAAATTGTACCTTT+GGG 0.364059 4_1:-30198846 Msa0543640:three_prime_UTR
TGAACAAGTGAATCATTCAT+TGG 0.368214 4_1:-30202273 Msa0543640:CDS
ATATGCTACATGAATGAAAA+TGG 0.368865 4_1:-30199470 Msa0543640:CDS
GTTTGACTTCTTCTAGAGTC+TGG 0.369641 4_1:+30198223 None:intergenic
CTCCATGACCATCTCCATAT+TGG 0.381267 4_1:+30199297 None:intergenic
GTTAGTTTGTGAGTTAGAAT+AGG 0.382802 4_1:-30198878 Msa0543640:three_prime_UTR
TTGAGCTTGTTTATTGGGCC+TGG 0.386404 4_1:-30198597 Msa0543640:three_prime_UTR
TCTCACTGCACGTACCAATA+TGG 0.388938 4_1:-30199311 Msa0543640:CDS
AGATAGGAGAAGCCCTTGAT+AGG 0.389678 4_1:-30203260 Msa0543640:CDS
ACATAATAAATTATAGTCTA+TGG 0.396575 4_1:+30198351 None:intergenic
AATTAATTAATTCAAACAAT+TGG 0.398842 4_1:-30199225 Msa0543640:exon
AGACTCTGAGGGTCAGGATC+TGG 0.400492 4_1:-30198197 Msa0543640:three_prime_UTR
CTTAGCAAAGAATCGAATAA+AGG 0.400991 4_1:-30199264 Msa0543640:CDS
GACACCATCTTGCTTCTTGT+AGG 0.401277 4_1:+30200230 None:intergenic
AACAAGCTCAACATAGTATT+GGG 0.401793 4_1:+30198609 None:intergenic
CTGTTGTGAGTATTAGCCTT+TGG 0.404364 4_1:-30198573 Msa0543640:three_prime_UTR
ATTCAAACAATTGGTATCCT+AGG 0.407644 4_1:-30199216 Msa0543640:three_prime_UTR
AAGTCGTTGCTCGGCAGTTA+CGG 0.408111 4_1:-30198768 Msa0543640:three_prime_UTR
AATGCACATGGGAATGTTGC+AGG 0.410250 4_1:+30198018 None:intergenic
AACTTCAGACTCTGAGGGTC+AGG 0.410991 4_1:-30198203 Msa0543640:three_prime_UTR
TATGACACACTTAAAGAAAC+AGG 0.415257 4_1:-30200983 Msa0543640:CDS
ACCATCGAGCTTCAAGACTT+TGG 0.415778 4_1:+30202228 None:intergenic
CATAATGAAGGTGGTGGAAG+GGG 0.416892 4_1:-30201497 Msa0543640:intron
CACGACCAAAGCTTAACCTT+GGG 0.417065 4_1:+30201463 None:intergenic
TTATGATAATAGCTTTGAAT+AGG 0.417093 4_1:-30198695 Msa0543640:three_prime_UTR
GGTTAAGCTTTGGTCGTGAT+AGG 0.419053 4_1:-30201458 Msa0543640:CDS
CTTTGGTCGTGATAGGCTAA+TGG 0.425070 4_1:-30201451 Msa0543640:CDS
TACCGCATAATCGTGTTTCA+AGG 0.426734 4_1:+30203508 None:intergenic
AAACAAGCTCAACATAGTAT+TGG 0.432101 4_1:+30198608 None:intergenic
TATCAATTCGAAAAGGAGAT+AGG 0.437146 4_1:-30203276 Msa0543640:CDS
TTATGTCTTAATCAAAGTAT+TGG 0.440202 4_1:-30198334 Msa0543640:three_prime_UTR
TAATTCAGGCTTGATCTTCA+AGG 0.441246 4_1:+30198147 None:intergenic
TATTATTTCTCGAAGGTGCT+AGG 0.444142 4_1:+30203753 None:intergenic
TCACTAAACTGAGGCTCAAA+TGG 0.444620 4_1:+30201399 None:intergenic
CATGGGAATGTTGCAGGTAA+TGG 0.446551 4_1:+30198024 None:intergenic
TGTGCAATCAACTCTTCAAC+AGG 0.451044 4_1:-30202132 Msa0543640:CDS
TTGTATGAGCTTGGAACGGC+AGG 0.451163 4_1:-30198931 Msa0543640:three_prime_UTR
AAACTACAAATCAAATTTGA+AGG 0.458000 4_1:-30199134 Msa0543640:three_prime_UTR
TCGATGGAGCCTAAATCTTA+AGG 0.459429 4_1:+30203176 None:intergenic
GAAGTGGAGAACCATTTCTA+TGG 0.461629 4_1:+30203618 None:intergenic
AGCGTTGCAATGTGCAATCA+TGG 0.462341 4_1:-30198724 Msa0543640:three_prime_UTR
AATAATCTCAGCCATAGAAA+TGG 0.464760 4_1:-30203629 Msa0543640:CDS
TGAAGGTGGTGGAAGGGGAT+GGG 0.466622 4_1:-30201492 Msa0543640:intron
ATGAAGGTGGTGGAAGGGGA+TGG 0.466799 4_1:-30201493 Msa0543640:intron
TTCACACTCCCTCCCCGCGA+GGG 0.469491 4_1:+30198648 None:intergenic
ATTGCAACGCTCAACGGTTA+CGG 0.471692 4_1:+30198736 None:intergenic
CTCGATACGTGGATAGTAGT+AGG 0.472011 4_1:-30203389 Msa0543640:CDS
GGAAGTAAGAAGAATGATCA+AGG 0.472360 4_1:-30203355 Msa0543640:CDS
CAATGATTTGGCTACTTCAT+CGG 0.474012 4_1:-30200026 Msa0543640:intron
AGTAATTAGAGAGCAAACTT+TGG 0.477642 4_1:+30201359 None:intergenic
CACACTCCCTCCCCGCGAGG+GGG 0.482533 4_1:+30198650 None:intergenic
GTTAGCTGTTTGTATGAGCT+TGG 0.483310 4_1:-30198940 Msa0543640:three_prime_UTR
TTGCTCGGCAGTTACGGTTG+CGG 0.483918 4_1:-30198762 Msa0543640:three_prime_UTR
CTAGCCCCAAGGTTAAGCTT+TGG 0.484468 4_1:-30201468 Msa0543640:CDS
GTTCTAAAAGAACAAATTGA+AGG 0.488570 4_1:-30198312 Msa0543640:three_prime_UTR
CCTTCCCTACCTCGTCAAAT+CGG 0.489491 4_1:-30200951 Msa0543640:intron
TAGGGTGCTGACATTTATAT+AGG 0.493704 4_1:+30203772 None:intergenic
TAATATTTGTTCAAGTGTGC+AGG 0.494598 4_1:-30198375 Msa0543640:three_prime_UTR
CTGTTCAACAAAATGATGTT+CGG 0.498435 4_1:-30198971 Msa0543640:three_prime_UTR
TGAAGATATCAGAAGGTCAA+TGG 0.507436 4_1:-30198099 Msa0543640:three_prime_UTR
GCATCATTTCTATCTTATGA+AGG 0.509979 4_1:-30202377 Msa0543640:CDS
TATCATAAGAGCAACGACTT+GGG 0.510149 4_1:+30198531 None:intergenic
AAGGAAGAGTTCAACAACAT+TGG 0.512213 4_1:+30203698 None:intergenic
ACATAATGAAGGTGGTGGAA+GGG 0.519788 4_1:-30201498 Msa0543640:intron
CTTTATTCGATTCTTTGCTA+AGG 0.521603 4_1:+30199265 None:intergenic
TTCTTCAAATCTCAAGAACT+AGG 0.521875 4_1:-30203659 Msa0543640:CDS
AATGATTCACTTGTTCAAAG+AGG 0.522078 4_1:+30202279 None:intergenic
GATTCTTTGCTAAGGTATCA+GGG 0.523495 4_1:+30199273 None:intergenic
CGTAATTCCAAATATTGGGT+TGG 0.529017 4_1:+30203543 None:intergenic
TTGCAGGCGGAGTTAGAAAG+AGG 0.529922 4_1:-30199512 Msa0543640:intron
TACATAATGAAGGTGGTGGA+AGG 0.533289 4_1:-30201499 Msa0543640:intron
CCTCAGTTATCAATTCGAAA+AGG 0.535490 4_1:-30203283 Msa0543640:CDS
TCTTGAGATTTGAAGAAACT+AGG 0.535631 4_1:+30203665 None:intergenic
TTATCATAAGAGCAACGACT+TGG 0.536018 4_1:+30198530 None:intergenic
CAAAGCTTAACGTATAATGT+TGG 0.536585 4_1:+30199091 None:intergenic
TCACACTCCCTCCCCGCGAG+GGG 0.542334 4_1:+30198649 None:intergenic
TCACGACCAAAGCTTAACCT+TGG 0.543926 4_1:+30201462 None:intergenic
AAGAATATCTTCATATACTC+CGG 0.545115 4_1:+30201040 None:intergenic
AACGACAGGAAGTCGTTGCT+CGG 0.547624 4_1:-30198777 Msa0543640:three_prime_UTR
TCAGGATCTGGACAAGCTAA+AGG 0.549835 4_1:-30198185 Msa0543640:three_prime_UTR
ATCATAAGAGCAACGACTTG+GGG 0.550645 4_1:+30198532 None:intergenic
GTATGAGCTTGGAACGGCAG+GGG 0.552687 4_1:-30198929 Msa0543640:three_prime_UTR
ATTATTTCTCGAAGGTGCTA+GGG 0.553881 4_1:+30203754 None:intergenic
TTGAGCGTCAGATGGTATGC+AGG 0.555775 4_1:+30198901 None:intergenic
TATGGTTATGATGTTTCACC+AGG 0.556636 4_1:-30203150 Msa0543640:intron
ACACTCCCTCCCCGCGAGGG+GGG 0.556883 4_1:+30198651 None:intergenic
GCGTTGCAATGTGCAATCAT+GGG 0.561021 4_1:-30198723 Msa0543640:three_prime_UTR
ATTCAAAGCTATTATCATAA+CGG 0.564092 4_1:+30198698 None:intergenic
ATGCGTATGTCGTTAACGAC+AGG 0.565744 4_1:-30198791 Msa0543640:three_prime_UTR
CATTCCTACAAGAAGCAAGA+TGG 0.565878 4_1:-30200234 Msa0543640:CDS
CTTTGGACTCTACGATGTAG+TGG 0.570277 4_1:+30202245 None:intergenic
TCAGTTTAGTGATATGCGCA+AGG 0.571438 4_1:-30201388 Msa0543640:CDS
TACTGCTTCTACCTTCACTA+AGG 0.572372 4_1:+30202303 None:intergenic
ATGACTACCTCAACAATGCA+TGG 0.572804 4_1:-30200183 Msa0543640:CDS
TGAAGAAAATTGTACCTTTG+GGG 0.573186 4_1:-30198845 Msa0543640:three_prime_UTR
GGATAGATACCATGCTATGT+TGG 0.573613 4_1:-30198470 Msa0543640:three_prime_UTR
TTAGTAGCGTAACATAGAAG+TGG 0.576392 4_1:+30203602 None:intergenic
CTTCACTAAGGTCTTTGAGG+TGG 0.578480 4_1:+30202315 None:intergenic
TAGTAGTAGGAGGTTGCAAG+AGG 0.579381 4_1:-30203376 Msa0543640:CDS
TCCAAAGTCTTGAAGCTCGA+TGG 0.580370 4_1:-30202229 Msa0543640:CDS
TAGTTTGTGAGTTAGAATAG+GGG 0.580853 4_1:-30198876 Msa0543640:three_prime_UTR
TTGCACATTGCAACGCTCAA+CGG 0.581515 4_1:+30198730 None:intergenic
CCGATTTGACGAGGTAGGGA+AGG 0.581648 4_1:+30200951 None:intergenic
TTCTAAAAGAACAAATTGAA+GGG 0.583093 4_1:-30198311 Msa0543640:three_prime_UTR
CATCATAACCATATTCTCGA+TGG 0.583685 4_1:+30203160 None:intergenic
CAGTTTAGTGATATGCGCAA+GGG 0.586945 4_1:-30201387 Msa0543640:CDS
GTTGTGAGTATTAGCCTTTG+GGG 0.593116 4_1:-30198571 Msa0543640:three_prime_UTR
AACTACAAATCAAATTTGAA+GGG 0.594026 4_1:-30199133 Msa0543640:three_prime_UTR
ATCCTTGAAACACGATTATG+CGG 0.595568 4_1:-30203510 Msa0543640:intron
GTATCATAAAATAAATATTG+GGG 0.596378 4_1:-30199069 Msa0543640:three_prime_UTR
GCGGAGTTAGAAAGAGGTGA+AGG 0.597815 4_1:-30199506 Msa0543640:CDS
TTATGATGTTTATGGCACCT+TGG 0.599831 4_1:-30201322 Msa0543640:CDS
CTTTGCATATTATTTCTCGA+AGG 0.601140 4_1:+30203746 None:intergenic
TCATACCGATTTGACGAGGT+AGG 0.603054 4_1:+30200946 None:intergenic
AAGTCAAACTTCAGACTCTG+AGG 0.605762 4_1:-30198209 Msa0543640:three_prime_UTR
TGTATGAGCTTGGAACGGCA+GGG 0.605887 4_1:-30198930 Msa0543640:three_prime_UTR
AATGGAGTAGTGGTCGTACA+AGG 0.607161 4_1:+30198042 None:intergenic
ATTCTTTGCTAAGGTATCAG+GGG 0.609406 4_1:+30199274 None:intergenic
GCTAATACTCACAACAGTCC+AGG 0.610686 4_1:+30198579 None:intergenic
CGTTGCAATGTGCAATCATG+GGG 0.611248 4_1:-30198722 Msa0543640:three_prime_UTR
TGTCTTGTCCAAGATATCAA+AGG 0.617651 4_1:-30202419 Msa0543640:CDS
TTTCTAGGATGCTCGATACG+TGG 0.619384 4_1:-30203400 Msa0543640:intron
CATACCGATTTGACGAGGTA+GGG 0.619671 4_1:+30200947 None:intergenic
CTACTATTTGGACTCCCCAA+AGG 0.619845 4_1:+30198557 None:intergenic
CATGGTATCTATCCTCACAT+AGG 0.621372 4_1:+30198479 None:intergenic
CTTCACACTCCCTCCCCGCG+AGG 0.623301 4_1:+30198647 None:intergenic
TACCAATATGGAGATGGTCA+TGG 0.623302 4_1:-30199299 Msa0543640:CDS
CTGTTTGTATGAGCTTGGAA+CGG 0.624214 4_1:-30198935 Msa0543640:three_prime_UTR
AGGGGATGGGACTAGCCCCA+AGG 0.624304 4_1:-30201479 Msa0543640:CDS
CACCTCAAAGACCTTAGTGA+AGG 0.626406 4_1:-30202314 Msa0543640:CDS
ACATATACTAAGATATACCT+AGG 0.626729 4_1:+30199199 None:intergenic
TGCACGTACCAATATGGAGA+TGG 0.629166 4_1:-30199305 Msa0543640:CDS
TGTTGCAGGTAATGGAGTAG+TGG 0.629348 4_1:+30198032 None:intergenic
AAACTAACTTGAGCGTCAGA+TGG 0.630000 4_1:+30198893 None:intergenic
AGTCAAACTTCAGACTCTGA+GGG 0.635666 4_1:-30198208 Msa0543640:three_prime_UTR
GAATGAAAATGGTGTTAGTG+AGG 0.637998 4_1:-30199459 Msa0543640:CDS
GCATCTGATATCTATATAAG+GGG 0.639936 4_1:+30198810 None:intergenic
ATGACTCTGAAGATATCAGA+AGG 0.642472 4_1:-30198106 Msa0543640:three_prime_UTR
TGCAGTGAGAAATTCTAGCA+AGG 0.643300 4_1:+30199324 None:intergenic
GAGAAGTTTAAGGACCACAA+TGG 0.643979 4_1:-30202455 Msa0543640:CDS
AGGATCTTAAAGAAACGTCA+AGG 0.646273 4_1:-30202112 Msa0543640:intron
TCATAAGAGCAACGACTTGG+GGG 0.655537 4_1:+30198533 None:intergenic
GTAGCTTCATACAATGCACA+TGG 0.661315 4_1:+30198006 None:intergenic
GTGGATGCTAGTGAAAGCAT+TGG 0.666886 4_1:+30202334 None:intergenic
GGGGTGCTCGTAGCAACACG+GGG 0.667484 4_1:+30198670 None:intergenic
CAGACACCCATGCATTGTTG+AGG 0.669111 4_1:+30200176 None:intergenic
GGACTTTGCAATGTCCCCAA+AGG 0.669667 4_1:+30198831 None:intergenic
ATGCCTTAAAATCTCCATTG+TGG 0.671659 4_1:+30202441 None:intergenic
TGAAAATGGTGTTAGTGAGG+AGG 0.675695 4_1:-30199456 Msa0543640:CDS
TGACTACCTCAACAATGCAT+GGG 0.680426 4_1:-30200182 Msa0543640:intron
GATACGTGGATAGTAGTAGG+AGG 0.688176 4_1:-30203386 Msa0543640:CDS
ATCGATACTGTGAAACACTT+AGG 0.689353 4_1:-30203306 Msa0543640:CDS
ACGACCAAAGCTTAACCTTG+GGG 0.696222 4_1:+30201464 None:intergenic
TTGGTCATACCGATTTGACG+AGG 0.701179 4_1:+30200942 None:intergenic
TAGCTTCATACAATGCACAT+GGG 0.709603 4_1:+30198007 None:intergenic
CAATAGTGATGTCCTATGTG+AGG 0.714380 4_1:-30198491 Msa0543640:three_prime_UTR
GTTGCAATGTGCAATCATGG+GGG 0.728904 4_1:-30198721 Msa0543640:three_prime_UTR
TTGCGCATATCACTAAACTG+AGG 0.729129 4_1:+30201390 None:intergenic
CAACAAAATGATGTTCGGTG+TGG 0.740446 4_1:-30198966 Msa0543640:three_prime_UTR
AGGAATGTTAAGTCTCTACG+AGG 0.767381 4_1:-30202399 Msa0543640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTTGTATTATTTCT+AGG - chr4_1:30198269-30198288 Msa0543640:three_prime_UTR 10.0%
!!! TAGATATTTTACAAAATTAA+CGG + chr4_1:30198905-30198924 None:intergenic 10.0%
!!! TTTTTTTTTAGAGAAAAAAT+TGG + chr4_1:30201273-30201292 None:intergenic 10.0%
!!! AATCTAATAATTTAGAATAA+AGG + chr4_1:30202064-30202083 None:intergenic 10.0%
!! AAATTATATAACAAATCAAT+TGG + chr4_1:30202153-30202172 None:intergenic 10.0%
!! AATTGTTTGAATTAATTAAT+TGG + chr4_1:30202460-30202479 None:intergenic 10.0%
!! AATTAATTAATTCAAACAAT+TGG - chr4_1:30202459-30202478 Msa0543640:CDS 10.0%
!! TTGTATCATAAAATAAATAT+TGG - chr4_1:30202613-30202632 Msa0543640:intron 10.0%
!! TGTATCATAAAATAAATATT+GGG - chr4_1:30202614-30202633 Msa0543640:intron 10.0%
!!! GTAAATTATTATTAATTTGT+AGG + chr4_1:30202674-30202693 None:intergenic 10.0%
!! TTATTTCATTTACAAATTTG+AGG + chr4_1:30199906-30199925 None:intergenic 15.0%
!! ATATTGCTAAAAAAAACATA+TGG + chr4_1:30200025-30200044 None:intergenic 15.0%
!!! TTTTTTATAAGCTATACAAT+TGG + chr4_1:30200092-30200111 None:intergenic 15.0%
!!! ATTTTTCTTTTACATAATGA+AGG - chr4_1:30200175-30200194 Msa0543640:intron 15.0%
!! AAAATTATGTTTATTTCAGT+TGG - chr4_1:30200597-30200616 Msa0543640:intron 15.0%
!! AAATTATGTTTATTTCAGTT+GGG - chr4_1:30200598-30200617 Msa0543640:intron 15.0%
!!! ATCAAAAATTTGTTTTTTGA+AGG + chr4_1:30200807-30200826 None:intergenic 15.0%
!!! TTGTACTAATAATTTTCATT+TGG - chr4_1:30201389-30201408 Msa0543640:CDS 15.0%
!!! AATTTCTAATATTTTCAACA+AGG - chr4_1:30202095-30202114 Msa0543640:intron 15.0%
!!! AATTTTCATTAAGCAAATTT+TGG + chr4_1:30202270-30202289 None:intergenic 15.0%
!!! AAAATTTGCTTAATGAAAAT+TGG - chr4_1:30202269-30202288 Msa0543640:CDS 15.0%
!! GTATCATAAAATAAATATTG+GGG - chr4_1:30202615-30202634 Msa0543640:intron 15.0%
!!! CAAATGTTAATTTTTGTATA+AGG - chr4_1:30202640-30202659 Msa0543640:intron 15.0%
!! ACATAATAAATTATAGTCTA+TGG + chr4_1:30203336-30203355 None:intergenic 15.0%
!!! TAATATTTTTCATTGCATTT+TGG + chr4_1:30203789-30203808 None:intergenic 15.0%
!! ATTGGATGAATTGTATATTA+TGG + chr4_1:30197971-30197990 None:intergenic 20.0%
!! ATATCGTAATTCCAAATATT+GGG + chr4_1:30198148-30198167 None:intergenic 20.0%
!! AAAAGATAAAAACCTATCAA+GGG + chr4_1:30198439-30198458 None:intergenic 20.0%
!! ATTATTCTTACCATATTAGT+TGG - chr4_1:30198605-30198624 Msa0543640:three_prime_UTR 20.0%
!! TTATTCTTACCATATTAGTT+GGG - chr4_1:30198606-30198625 Msa0543640:three_prime_UTR 20.0%
!!! ATTTTTTTTCCCAACTAATA+TGG + chr4_1:30198618-30198637 None:intergenic 20.0%
!!! TTCATGATATATATTTTCAC+TGG - chr4_1:30198746-30198765 Msa0543640:three_prime_UTR 20.0%
!!! ACCTTAAAAATCTTTTTTAG+CGG + chr4_1:30199013-30199032 None:intergenic 20.0%
!!! AGACACTTTACAATTTTATT+AGG - chr4_1:30199033-30199052 Msa0543640:three_prime_UTR 20.0%
!! TGGAAATTCTATTCAAAATT+GGG + chr4_1:30199060-30199079 None:intergenic 20.0%
!! ATGGAAATTCTATTCAAAAT+TGG + chr4_1:30199061-30199080 None:intergenic 20.0%
!!! AGATGTTTTTCTATATGATT+AGG - chr4_1:30199163-30199182 Msa0543640:three_prime_UTR 20.0%
!!! AGATATTTTTGAGAAGTTTA+AGG - chr4_1:30199219-30199238 Msa0543640:exon 20.0%
!!! ATATTGATTCATACGAAAAA+AGG - chr4_1:30199479-30199498 Msa0543640:CDS 20.0%
!! CTTATATTAGATGGAAAAAT+TGG + chr4_1:30199752-30199771 None:intergenic 20.0%
!! AATATGTTATGTGAGTAAAA+GGG + chr4_1:30199776-30199795 None:intergenic 20.0%
!! AAATATGTTATGTGAGTAAA+AGG + chr4_1:30199777-30199796 None:intergenic 20.0%
!! GAATGAATTATAAATAAGAC+CGG - chr4_1:30200489-30200508 Msa0543640:intron 20.0%
!! AATGAATTATAAATAAGACC+GGG - chr4_1:30200490-30200509 Msa0543640:intron 20.0%
!!! TTAAATTTTGAGCAAAACTA+AGG - chr4_1:30200846-30200865 Msa0543640:intron 20.0%
!!! TAAATTTTGAGCAAAACTAA+GGG - chr4_1:30200847-30200866 Msa0543640:intron 20.0%
!!! AATAAAGTCTAAAATTTGGT+GGG + chr4_1:30201055-30201074 None:intergenic 20.0%
!!! TAATAAAGTCTAAAATTTGG+TGG + chr4_1:30201056-30201075 None:intergenic 20.0%
!!! ACCAAATTTTAGACTTTATT+AGG - chr4_1:30201055-30201074 Msa0543640:CDS 20.0%
!!! CCAAATTTTAGACTTTATTA+GGG - chr4_1:30201056-30201075 Msa0543640:CDS 20.0%
!! ATAATTTAGTTGTTAAGAAC+CGG + chr4_1:30201104-30201123 None:intergenic 20.0%
!!! TTTTTAGAGAAAAAATTGGA+GGG + chr4_1:30201269-30201288 None:intergenic 20.0%
!!! TTTTTTAGAGAAAAAATTGG+AGG + chr4_1:30201270-30201289 None:intergenic 20.0%
!! ACAGTTGAATAGATAAAATT+TGG + chr4_1:30201298-30201317 None:intergenic 20.0%
!! GTGTGATCATAAATATATTA+TGG + chr4_1:30201332-30201351 None:intergenic 20.0%
!!! GTTTTTCAAATATATTACAG+TGG - chr4_1:30201411-30201430 Msa0543640:CDS 20.0%
!! ATTTAGCAAAAAATAGGAAT+GGG + chr4_1:30201555-30201574 None:intergenic 20.0%
!!! TTTTATGTGCAACTTTTTTT+TGG + chr4_1:30201781-30201800 None:intergenic 20.0%
!! ATCCAATTTAACAAGTTTAT+AGG - chr4_1:30202019-30202038 Msa0543640:intron 20.0%
!!! ATCCTATAAACTTGTTAAAT+TGG + chr4_1:30202024-30202043 None:intergenic 20.0%
!!! GATTTGTTATATAATTTTGC+AGG - chr4_1:30202156-30202175 Msa0543640:CDS 20.0%
!! TGTCAAAGAAATAGAAATAA+AGG - chr4_1:30202505-30202524 Msa0543640:intron 20.0%
!! AAACTACAAATCAAATTTGA+AGG - chr4_1:30202550-30202569 Msa0543640:intron 20.0%
!! AACTACAAATCAAATTTGAA+GGG - chr4_1:30202551-30202570 Msa0543640:intron 20.0%
!! ATTCAAAGCTATTATCATAA+CGG + chr4_1:30202989-30203008 None:intergenic 20.0%
!!! TTATGATAATAGCTTTGAAT+AGG - chr4_1:30202989-30203008 Msa0543640:intron 20.0%
!! TTATGTCTTAATCAAAGTAT+TGG - chr4_1:30203350-30203369 Msa0543640:CDS 20.0%
!!! TTCTAAAAGAACAAATTGAA+GGG - chr4_1:30203373-30203392 Msa0543640:CDS 20.0%
! GATATCGTAATTCCAAATAT+TGG + chr4_1:30198149-30198168 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG - chr4_1:30198209-30198228 Msa0543640:three_prime_UTR 25.0%
! CAAAAGATAAAAACCTATCA+AGG + chr4_1:30198440-30198459 None:intergenic 25.0%
!!! TTATCTTTTGAAAAATGCAG+TGG - chr4_1:30198450-30198469 Msa0543640:three_prime_UTR 25.0%
! ACTACAATGGTACAATATTT+AGG + chr4_1:30198961-30198980 None:intergenic 25.0%
! CTGTTTATCATATACTACAA+TGG + chr4_1:30198974-30198993 None:intergenic 25.0%
! CATTGTAGTATATGATAAAC+AGG - chr4_1:30198972-30198991 Msa0543640:three_prime_UTR 25.0%
!! ACCGCTAAAAAAGATTTTTA+AGG - chr4_1:30199009-30199028 Msa0543640:three_prime_UTR 25.0%
!!! TAGCTTTCTGAAACTAAAAA+TGG + chr4_1:30199080-30199099 None:intergenic 25.0%
! AAAAAAGATCTTCATCATTG+TGG + chr4_1:30199190-30199209 None:intergenic 25.0%
! TTAACATTCCTTTGATATCT+TGG + chr4_1:30199276-30199295 None:intergenic 25.0%
!! TTATGAAGGAGAACAAATTT+TGG - chr4_1:30199321-30199340 Msa0543640:CDS 25.0%
! CACAATGTTGAAATTCAATT+TGG + chr4_1:30199536-30199555 None:intergenic 25.0%
!! TGAGAATGATTTCATTTTGT+TGG - chr4_1:30199609-30199628 Msa0543640:intron 25.0%
!! GAGAATGATTTCATTTTGTT+GGG - chr4_1:30199610-30199629 Msa0543640:intron 25.0%
! TTGATCATCAAATTAGATCT+TGG - chr4_1:30199650-30199669 Msa0543640:intron 25.0%
! TGATCATCAAATTAGATCTT+GGG - chr4_1:30199651-30199670 Msa0543640:intron 25.0%
! CTCAAAACTATAATGTCTTA+AGG + chr4_1:30199702-30199721 None:intergenic 25.0%
!! TAAAAGGGTCTTATATTAGA+TGG + chr4_1:30199761-30199780 None:intergenic 25.0%
!! ATAACATATTTTCACTTGTG+TGG - chr4_1:30199786-30199805 Msa0543640:intron 25.0%
! GTATAATAGGGTAGTAAAAA+AGG + chr4_1:30200070-30200089 None:intergenic 25.0%
! GCTATACAATTGGTATAATA+GGG + chr4_1:30200082-30200101 None:intergenic 25.0%
! AGCTATACAATTGGTATAAT+AGG + chr4_1:30200083-30200102 None:intergenic 25.0%
!! TTTCTTTTACATAATGAAGG+TGG - chr4_1:30200178-30200197 Msa0543640:intron 25.0%
! GATGACATTTATGATGTTTA+TGG - chr4_1:30200354-30200373 Msa0543640:intron 25.0%
!! TGAATTAGAGCTTTTTACAA+CGG - chr4_1:30200386-30200405 Msa0543640:intron 25.0%
! CTCTTATAAAAAAGACTAGA+GGG + chr4_1:30200438-30200457 None:intergenic 25.0%
!!! CTTTTTTATAAGAGGAAGTT+TGG - chr4_1:30200444-30200463 Msa0543640:intron 25.0%
! TCAACAAAAGTTTATGTATC+TGG - chr4_1:30200467-30200486 Msa0543640:intron 25.0%
! ATGAATTATAAATAAGACCG+GGG - chr4_1:30200491-30200510 Msa0543640:intron 25.0%
! TAATGCAATTCAAATTCTTC+CGG - chr4_1:30200625-30200644 Msa0543640:intron 25.0%
! AAGAATATCTTCATATACTC+CGG + chr4_1:30200647-30200666 None:intergenic 25.0%
! GTATATGAAGATATTCTTCT+TGG - chr4_1:30200649-30200668 Msa0543640:intron 25.0%
!!! TTTTGATTAGAACATGACTT+AGG - chr4_1:30200820-30200839 Msa0543640:intron 25.0%
! TTTGATTAGAACATGACTTA+GGG - chr4_1:30200821-30200840 Msa0543640:intron 25.0%
! AGCAAAATTTGTATATTCAC+AGG - chr4_1:30200896-30200915 Msa0543640:intron 25.0%
! GCAAAATTTGTATATTCACA+GGG - chr4_1:30200897-30200916 Msa0543640:intron 25.0%
! GGGCTAAATAATTTAGATTT+AGG - chr4_1:30200917-30200936 Msa0543640:intron 25.0%
! AATTTAGATTTAGGTACACA+TGG - chr4_1:30200926-30200945 Msa0543640:intron 25.0%
!! CCCTAATAAAGTCTAAAATT+TGG + chr4_1:30201059-30201078 None:intergenic 25.0%
!!! TTATTGAATTTTTCTAGCCA+AGG - chr4_1:30201142-30201161 Msa0543640:intron 25.0%
!! CATATATCTCAAATTAGCTT+TGG - chr4_1:30201204-30201223 Msa0543640:intron 25.0%
! GATTTAGCAAAAAATAGGAA+TGG + chr4_1:30201556-30201575 None:intergenic 25.0%
! GTTACGATTTAGCAAAAAAT+AGG + chr4_1:30201561-30201580 None:intergenic 25.0%
! ATTGCAAAGTCGAAAAATTA+TGG + chr4_1:30201642-30201661 None:intergenic 25.0%
! GATATGATAATATGCATGTA+TGG + chr4_1:30201712-30201731 None:intergenic 25.0%
! CACATTTCAACTCAATTATA+AGG - chr4_1:30201971-30201990 Msa0543640:intron 25.0%
!! ACTTGTTAAATTGGATCAAT+TGG + chr4_1:30202015-30202034 None:intergenic 25.0%
! AATCAATTGGATTGATTACT+CGG + chr4_1:30202140-30202159 None:intergenic 25.0%
!! TTGTTATATAATTTTGCAGG+CGG - chr4_1:30202159-30202178 Msa0543640:CDS 25.0%
! ATATGCTACATGAATGAAAA+TGG - chr4_1:30202214-30202233 Msa0543640:CDS 25.0%
!!! TCTGAAAAATATTTTGAGGA+AGG + chr4_1:30202328-30202347 None:intergenic 25.0%
!!! TGTCTCTGAAAAATATTTTG+AGG + chr4_1:30202332-30202351 None:intergenic 25.0%
! ACATATACTAAGATATACCT+AGG + chr4_1:30202488-30202507 None:intergenic 25.0%
!!! TAAAGGTATATTTTAGTGTG+AGG - chr4_1:30202522-30202541 Msa0543640:intron 25.0%
!!! AAAGGTATATTTTAGTGTGA+GGG - chr4_1:30202523-30202542 Msa0543640:intron 25.0%
!!! TTAGTTTGTGAGTTAGAATA+GGG - chr4_1:30202807-30202826 Msa0543640:intron 25.0%
! TTGAAGAAAATTGTACCTTT+GGG - chr4_1:30202838-30202857 Msa0543640:intron 25.0%
!!! GTTCTAAAAGAACAAATTGA+AGG - chr4_1:30203372-30203391 Msa0543640:CDS 25.0%
TATAGGCATATTTGTGTCTT+TGG + chr4_1:30197898-30197917 None:intergenic 30.0%
! CTTTGCATATTATTTCTCGA+AGG + chr4_1:30197941-30197960 None:intergenic 30.0%
TCTTGAGATTTGAAGAAACT+AGG + chr4_1:30198022-30198041 None:intergenic 30.0%
TTCTTCAAATCTCAAGAACT+AGG - chr4_1:30198025-30198044 Msa0543640:three_prime_UTR 30.0%
AATAATCTCAGCCATAGAAA+TGG - chr4_1:30198055-30198074 Msa0543640:three_prime_UTR 30.0%
TATCAATTCGAAAAGGAGAT+AGG - chr4_1:30198408-30198427 Msa0543640:three_prime_UTR 30.0%
ATGAAACTGCCTTAAGATTT+AGG - chr4_1:30198499-30198518 Msa0543640:three_prime_UTR 30.0%
GCATCATTTCTATCTTATGA+AGG - chr4_1:30199307-30199326 Msa0543640:CDS 30.0%
AATGATTCACTTGTTCAAAG+AGG + chr4_1:30199408-30199427 None:intergenic 30.0%
TGAACAAGTGAATCATTCAT+TGG - chr4_1:30199411-30199430 Msa0543640:CDS 30.0%
AAAAAGGAATGACGCAAATA+AGG - chr4_1:30199495-30199514 Msa0543640:CDS 30.0%
GATGTTGGACACTATATAAA+TGG + chr4_1:30199730-30199749 None:intergenic 30.0%
TAGATGGAAAAATTGGATGT+TGG + chr4_1:30199745-30199764 None:intergenic 30.0%
! GCTAATGGAATGTTTCTTTT+GGG - chr4_1:30200248-30200267 Msa0543640:CDS 30.0%
AGTAATTAGAGAGCAAACTT+TGG + chr4_1:30200328-30200347 None:intergenic 30.0%
! AAAAAGCTCTAATTCATCCA+AGG + chr4_1:30200382-30200401 None:intergenic 30.0%
CCTCTTATAAAAAAGACTAG+AGG + chr4_1:30200439-30200458 None:intergenic 30.0%
!!! CCTCTAGTCTTTTTTATAAG+AGG - chr4_1:30200436-30200455 Msa0543640:intron 30.0%
TATGACACACTTAAAGAAAC+AGG - chr4_1:30200701-30200720 Msa0543640:intron 30.0%
! ACGTGGTTTTTATGTGAATT+TGG + chr4_1:30200764-30200783 None:intergenic 30.0%
TAAAAACCACGTTCACAAAA+TGG - chr4_1:30200772-30200791 Msa0543640:intron 30.0%
! TTGAGGTAGTCATCAAATTT+TGG + chr4_1:30201494-30201513 None:intergenic 30.0%
GCTAAATCGTAACATAACAA+AGG - chr4_1:30201568-30201587 Msa0543640:intron 30.0%
AAATCGTAACATAACAAAGG+AGG - chr4_1:30201571-30201590 Msa0543640:intron 30.0%
AATCGTAACATAACAAAGGA+GGG - chr4_1:30201572-30201591 Msa0543640:intron 30.0%
CAAAGTCGAAAAATTATGGA+CGG + chr4_1:30201638-30201657 None:intergenic 30.0%
! TTTTCGACTTTGCAATGATT+TGG - chr4_1:30201646-30201665 Msa0543640:intron 30.0%
TGATAATATGCATGTATGGA+CGG + chr4_1:30201708-30201727 None:intergenic 30.0%
AAAGTTGCACATAAAAAGCA+CGG - chr4_1:30201785-30201804 Msa0543640:intron 30.0%
!! GTAATTACAAGTGTTGATGT+CGG - chr4_1:30201885-30201904 Msa0543640:intron 30.0%
GATCAATTGGATTGATTACT+CGG + chr4_1:30202002-30202021 None:intergenic 30.0%
CTTTATTCGATTCTTTGCTA+AGG + chr4_1:30202422-30202441 None:intergenic 30.0%
CTTAGCAAAGAATCGAATAA+AGG - chr4_1:30202420-30202439 Msa0543640:CDS 30.0%
ATTCAAACAATTGGTATCCT+AGG - chr4_1:30202468-30202487 Msa0543640:intron 30.0%
CAAAGCTTAACGTATAATGT+TGG + chr4_1:30202596-30202615 None:intergenic 30.0%
CTGTTCAACAAAATGATGTT+CGG - chr4_1:30202713-30202732 Msa0543640:intron 30.0%
!! GTTAGTTTGTGAGTTAGAAT+AGG - chr4_1:30202806-30202825 Msa0543640:intron 30.0%
! TAGTTTGTGAGTTAGAATAG+GGG - chr4_1:30202808-30202827 Msa0543640:intron 30.0%
GTTGAAGAAAATTGTACCTT+TGG - chr4_1:30202837-30202856 Msa0543640:intron 30.0%
TGAAGAAAATTGTACCTTTG+GGG - chr4_1:30202839-30202858 Msa0543640:intron 30.0%
AACAAGCTCAACATAGTATT+GGG + chr4_1:30203078-30203097 None:intergenic 30.0%
AAACAAGCTCAACATAGTAT+TGG + chr4_1:30203079-30203098 None:intergenic 30.0%
! ACTATGTTGAGCTTGTTTAT+TGG - chr4_1:30203081-30203100 Msa0543640:intron 30.0%
! CTATGTTGAGCTTGTTTATT+GGG - chr4_1:30203082-30203101 Msa0543640:intron 30.0%
! TATTTTGTTCCAACATAGCA+TGG + chr4_1:30203226-30203245 None:intergenic 30.0%
TAATATTTGTTCAAGTGTGC+AGG - chr4_1:30203309-30203328 Msa0543640:CDS 30.0%
CATGATCTTCAGAATAATTC+AGG + chr4_1:30203554-30203573 None:intergenic 30.0%
!! TTTTAGTGAAGGTACAAAGA+AGG - chr4_1:30203615-30203634 Msa0543640:CDS 30.0%
!!! GATCGAGTCTAGTTTTAATT+AGG + chr4_1:30203727-30203746 None:intergenic 30.0%
!! TAGGGTGCTGACATTTATAT+AGG + chr4_1:30197915-30197934 None:intergenic 35.0%
!! ATTATTTCTCGAAGGTGCTA+GGG + chr4_1:30197933-30197952 None:intergenic 35.0%
!! TATTATTTCTCGAAGGTGCT+AGG + chr4_1:30197934-30197953 None:intergenic 35.0%
AAGGAAGAGTTCAACAACAT+TGG + chr4_1:30197989-30198008 None:intergenic 35.0%
GAAACTAGGAAGTGAGTTAA+AGG + chr4_1:30198008-30198027 None:intergenic 35.0%
TTAGTAGCGTAACATAGAAG+TGG + chr4_1:30198085-30198104 None:intergenic 35.0%
!! CCAAATATTGGGTTGGTAAT+TGG + chr4_1:30198137-30198156 None:intergenic 35.0%
CCAATTACCAACCCAATATT+TGG - chr4_1:30198134-30198153 Msa0543640:three_prime_UTR 35.0%
CGTAATTCCAAATATTGGGT+TGG + chr4_1:30198144-30198163 None:intergenic 35.0%
ATCCTTGAAACACGATTATG+CGG - chr4_1:30198174-30198193 Msa0543640:three_prime_UTR 35.0%
GGAAGTAAGAAGAATGATCA+AGG - chr4_1:30198329-30198348 Msa0543640:three_prime_UTR 35.0%
ATCGATACTGTGAAACACTT+AGG - chr4_1:30198378-30198397 Msa0543640:three_prime_UTR 35.0%
!! CCTTTTCGAATTGATAACTG+AGG + chr4_1:30198404-30198423 None:intergenic 35.0%
CCTCAGTTATCAATTCGAAA+AGG - chr4_1:30198401-30198420 Msa0543640:three_prime_UTR 35.0%
TGCAGTGGTTCAAACAATAT+TGG - chr4_1:30198465-30198484 Msa0543640:three_prime_UTR 35.0%
CATCATAACCATATTCTCGA+TGG + chr4_1:30198527-30198546 None:intergenic 35.0%
TATGGTTATGATGTTTCACC+AGG - chr4_1:30198534-30198553 Msa0543640:three_prime_UTR 35.0%
ATGCCTTAAAATCTCCATTG+TGG + chr4_1:30199246-30199265 None:intergenic 35.0%
TGTCTTGTCCAAGATATCAA+AGG - chr4_1:30199265-30199284 Msa0543640:CDS 35.0%
AGGATCTTAAAGAAACGTCA+AGG - chr4_1:30199572-30199591 Msa0543640:intron 35.0%
! TACAAATTTGAGGTGAAACG+TGG + chr4_1:30199896-30199915 None:intergenic 35.0%
! CTTTTACATAATGAAGGTGG+TGG - chr4_1:30200181-30200200 Msa0543640:intron 35.0%
! GGCTAATGGAATGTTTCTTT+TGG - chr4_1:30200247-30200266 Msa0543640:CDS 35.0%
TTATGATGTTTATGGCACCT+TGG - chr4_1:30200362-30200381 Msa0543640:intron 35.0%
! ATTAGAGCTTTTTACAACGG+CGG - chr4_1:30200389-30200408 Msa0543640:intron 35.0%
! TTCTAACCATTTTGTGAACG+TGG + chr4_1:30200781-30200800 None:intergenic 35.0%
! AAAAACCGCGTTTAAAGTCT+TGG + chr4_1:30200982-30201001 None:intergenic 35.0%
ATGTTCGAAGTCACAATTTC+CGG - chr4_1:30201082-30201101 Msa0543640:intron 35.0%
! AAAAACCACGTTTAAAGCCT+TGG + chr4_1:30201162-30201181 None:intergenic 35.0%
ATCGTAACATAACAAAGGAG+GGG - chr4_1:30201573-30201592 Msa0543640:intron 35.0%
! CAATGATTTGGCTACTTCAT+CGG - chr4_1:30201658-30201677 Msa0543640:intron 35.0%
! GAATGAAAATGGTGTTAGTG+AGG - chr4_1:30202225-30202244 Msa0543640:CDS 35.0%
! ATTCTTTGCTAAGGTATCAG+GGG + chr4_1:30202413-30202432 None:intergenic 35.0%
! GATTCTTTGCTAAGGTATCA+GGG + chr4_1:30202414-30202433 None:intergenic 35.0%
! TTGGAGCTGTACATTTTCTT+TGG + chr4_1:30202577-30202596 None:intergenic 35.0%
! CGAACATCATTTTGTTGAAC+AGG + chr4_1:30202715-30202734 None:intergenic 35.0%
!! TGTTGTGAGTATTAGCCTTT+GGG - chr4_1:30203112-30203131 Msa0543640:intron 35.0%
TATCATAAGAGCAACGACTT+GGG + chr4_1:30203156-30203175 None:intergenic 35.0%
TTATCATAAGAGCAACGACT+TGG + chr4_1:30203157-30203176 None:intergenic 35.0%
TAATTCAGGCTTGATCTTCA+AGG + chr4_1:30203540-30203559 None:intergenic 35.0%
! ATGACTCTGAAGATATCAGA+AGG - chr4_1:30203578-30203597 Msa0543640:CDS 35.0%
TGAAGATATCAGAAGGTCAA+TGG - chr4_1:30203585-30203604 Msa0543640:CDS 35.0%
!!! ATGGATGTCACTTTTAGTGA+AGG - chr4_1:30203604-30203623 Msa0543640:CDS 35.0%
TAGCTTCATACAATGCACAT+GGG + chr4_1:30203680-30203699 None:intergenic 35.0%
AAGCTACAACTATGTCTCTA+TGG - chr4_1:30203694-30203713 Msa0543640:CDS 35.0%
GAAGTGGAGAACCATTTCTA+TGG + chr4_1:30198069-30198088 None:intergenic 40.0%
TACCGCATAATCGTGTTTCA+AGG + chr4_1:30198179-30198198 None:intergenic 40.0%
TCGATGGAGCCTAAATCTTA+AGG + chr4_1:30198511-30198530 None:intergenic 40.0%
TTTAGGCTCCATCGAGAATA+TGG - chr4_1:30198516-30198535 Msa0543640:three_prime_UTR 40.0%
GAGAAGTTTAAGGACCACAA+TGG - chr4_1:30199229-30199248 Msa0543640:exon 40.0%
! GGACCACAATGGAGATTTTA+AGG - chr4_1:30199240-30199259 Msa0543640:CDS 40.0%
AGGAATGTTAAGTCTCTACG+AGG - chr4_1:30199285-30199304 Msa0543640:CDS 40.0%
TACCTTCACTAAGGTCTTTG+AGG + chr4_1:30199375-30199394 None:intergenic 40.0%
TACTGCTTCTACCTTCACTA+AGG + chr4_1:30199384-30199403 None:intergenic 40.0%
TGTGCAATCAACTCTTCAAC+AGG - chr4_1:30199552-30199571 Msa0543640:intron 40.0%
TAACTCCATTGGGACATGAT+GGG + chr4_1:30199844-30199863 None:intergenic 40.0%
ATAACTCCATTGGGACATGA+TGG + chr4_1:30199845-30199864 None:intergenic 40.0%
ATCATGTCCCAATGGAGTTA+TGG - chr4_1:30199844-30199863 Msa0543640:intron 40.0%
TCCCAATGGAGTTATGGTTT+GGG - chr4_1:30199850-30199869 Msa0543640:intron 40.0%
TCCCAAACCATAACTCCATT+GGG + chr4_1:30199854-30199873 None:intergenic 40.0%
TTCCCAAACCATAACTCCAT+TGG + chr4_1:30199855-30199874 None:intergenic 40.0%
TTTGGGAATGAAGTCGTGAT+CGG - chr4_1:30199867-30199886 Msa0543640:intron 40.0%
!! TACATAATGAAGGTGGTGGA+AGG - chr4_1:30200185-30200204 Msa0543640:CDS 40.0%
!! ACATAATGAAGGTGGTGGAA+GGG - chr4_1:30200186-30200205 Msa0543640:CDS 40.0%
TCACTAAACTGAGGCTCAAA+TGG + chr4_1:30200288-30200307 None:intergenic 40.0%
TTGCGCATATCACTAAACTG+AGG + chr4_1:30200297-30200316 None:intergenic 40.0%
TCAGTTTAGTGATATGCGCA+AGG - chr4_1:30200296-30200315 Msa0543640:intron 40.0%
CAGTTTAGTGATATGCGCAA+GGG - chr4_1:30200297-30200316 Msa0543640:intron 40.0%
! TTTTTACAACGGCGGTAGAA+AGG - chr4_1:30200397-30200416 Msa0543640:intron 40.0%
TCTAGCCAAGACTTTAAACG+CGG - chr4_1:30200974-30200993 Msa0543640:CDS 40.0%
CATTCCTACAAGAAGCAAGA+TGG - chr4_1:30201450-30201469 Msa0543640:CDS 40.0%
ATGACTACCTCAACAATGCA+TGG - chr4_1:30201501-30201520 Msa0543640:intron 40.0%
TGACTACCTCAACAATGCAT+GGG - chr4_1:30201502-30201521 Msa0543640:intron 40.0%
ATGGGTGAGTAAAACTACAC+CGG + chr4_1:30201537-30201556 None:intergenic 40.0%
ATGTATGGACGGTTAAGGTA+AGG + chr4_1:30201697-30201716 None:intergenic 40.0%
TATGCATGTATGGACGGTTA+AGG + chr4_1:30201702-30201721 None:intergenic 40.0%
! GCACATAAAAAGCACGGATA+CGG - chr4_1:30201791-30201810 Msa0543640:intron 40.0%
AAATGTGCACCTATGAAGCA+CGG + chr4_1:30201945-30201964 None:intergenic 40.0%
GCTTCATAGGTGCACATTTA+AGG - chr4_1:30201946-30201965 Msa0543640:intron 40.0%
! TGAAAATGGTGTTAGTGAGG+AGG - chr4_1:30202228-30202247 Msa0543640:CDS 40.0%
TGCAGTGAGAAATTCTAGCA+AGG + chr4_1:30202363-30202382 None:intergenic 40.0%
TACCAATATGGAGATGGTCA+TGG - chr4_1:30202385-30202404 Msa0543640:CDS 40.0%
! CGATTCTTTGCTAAGGTATC+AGG + chr4_1:30202415-30202434 None:intergenic 40.0%
! CAACAAAATGATGTTCGGTG+TGG - chr4_1:30202718-30202737 Msa0543640:intron 40.0%
GTTAGCTGTTTGTATGAGCT+TGG - chr4_1:30202744-30202763 Msa0543640:intron 40.0%
CTGTTTGTATGAGCTTGGAA+CGG - chr4_1:30202749-30202768 Msa0543640:intron 40.0%
AAACTAACTTGAGCGTCAGA+TGG + chr4_1:30202794-30202813 None:intergenic 40.0%
!! CTGTTGTGAGTATTAGCCTT+TGG - chr4_1:30203111-30203130 Msa0543640:intron 40.0%
!! GTTGTGAGTATTAGCCTTTG+GGG - chr4_1:30203113-30203132 Msa0543640:intron 40.0%
ATCATAAGAGCAACGACTTG+GGG + chr4_1:30203155-30203174 None:intergenic 40.0%
CAATAGTGATGTCCTATGTG+AGG - chr4_1:30203193-30203212 Msa0543640:CDS 40.0%
CATGGTATCTATCCTCACAT+AGG + chr4_1:30203208-30203227 None:intergenic 40.0%
GGATAGATACCATGCTATGT+TGG - chr4_1:30203214-30203233 Msa0543640:CDS 40.0%
!! GTTTGACTTCTTCTAGAGTC+TGG + chr4_1:30203464-30203483 None:intergenic 40.0%
AAGTCAAACTTCAGACTCTG+AGG - chr4_1:30203475-30203494 Msa0543640:intron 40.0%
AGTCAAACTTCAGACTCTGA+GGG - chr4_1:30203476-30203495 Msa0543640:intron 40.0%
GTAGCTTCATACAATGCACA+TGG + chr4_1:30203681-30203700 None:intergenic 40.0%
!! TTTCTAGGATGCTCGATACG+TGG - chr4_1:30198284-30198303 Msa0543640:three_prime_UTR 45.0%
CTCGATACGTGGATAGTAGT+AGG - chr4_1:30198295-30198314 Msa0543640:three_prime_UTR 45.0%
GATACGTGGATAGTAGTAGG+AGG - chr4_1:30198298-30198317 Msa0543640:three_prime_UTR 45.0%
TAGTAGTAGGAGGTTGCAAG+AGG - chr4_1:30198308-30198327 Msa0543640:three_prime_UTR 45.0%
AGATAGGAGAAGCCCTTGAT+AGG - chr4_1:30198424-30198443 Msa0543640:three_prime_UTR 45.0%
TGTACGTATGTATGTGCACC+TGG + chr4_1:30198555-30198574 None:intergenic 45.0%
! GTGGATGCTAGTGAAAGCAT+TGG + chr4_1:30199353-30199372 None:intergenic 45.0%
! CTTCACTAAGGTCTTTGAGG+TGG + chr4_1:30199372-30199391 None:intergenic 45.0%
CACCTCAAAGACCTTAGTGA+AGG - chr4_1:30199370-30199389 Msa0543640:CDS 45.0%
CTTTGGACTCTACGATGTAG+TGG + chr4_1:30199442-30199461 None:intergenic 45.0%
TCCAAAGTCTTGAAGCTCGA+TGG - chr4_1:30199455-30199474 Msa0543640:CDS 45.0%
ACCATCGAGCTTCAAGACTT+TGG + chr4_1:30199459-30199478 None:intergenic 45.0%
AAGCCTAATGTGATGCTCCT+CGG - chr4_1:30199816-30199835 Msa0543640:intron 45.0%
GTCCCAATGGAGTTATGGTT+TGG - chr4_1:30199849-30199868 Msa0543640:intron 45.0%
TTGGGAATGAAGTCGTGATC+GGG - chr4_1:30199868-30199887 Msa0543640:intron 45.0%
!! CATAATGAAGGTGGTGGAAG+GGG - chr4_1:30200187-30200206 Msa0543640:CDS 45.0%
ACGACCAAAGCTTAACCTTG+GGG + chr4_1:30200223-30200242 None:intergenic 45.0%
CACGACCAAAGCTTAACCTT+GGG + chr4_1:30200224-30200243 None:intergenic 45.0%
TCACGACCAAAGCTTAACCT+TGG + chr4_1:30200225-30200244 None:intergenic 45.0%
! GGTTAAGCTTTGGTCGTGAT+AGG - chr4_1:30200226-30200245 Msa0543640:CDS 45.0%
CTTTGGTCGTGATAGGCTAA+TGG - chr4_1:30200233-30200252 Msa0543640:CDS 45.0%
! GAATGTTTCTTTTGGGCTGC+TGG - chr4_1:30200255-30200274 Msa0543640:CDS 45.0%
GCAAATAGTGTGATACTCCC+CGG + chr4_1:30200511-30200530 None:intergenic 45.0%
!! CATACCGATTTGACGAGGTA+GGG + chr4_1:30200740-30200759 None:intergenic 45.0%
!! TCATACCGATTTGACGAGGT+AGG + chr4_1:30200741-30200760 None:intergenic 45.0%
!! TTGGTCATACCGATTTGACG+AGG + chr4_1:30200745-30200764 None:intergenic 45.0%
!! TCTAGCCAAGGCTTTAAACG+TGG - chr4_1:30201154-30201173 Msa0543640:intron 45.0%
GACACCATCTTGCTTCTTGT+AGG + chr4_1:30201457-30201476 None:intergenic 45.0%
! AAAAAGCACGGATACGGACA+CGG - chr4_1:30201797-30201816 Msa0543640:intron 45.0%
ACACAACACATACCACACAC+TGG - chr4_1:30201908-30201927 Msa0543640:intron 45.0%
ACGTCTAATCCGTGCTTCAT+AGG - chr4_1:30201933-30201952 Msa0543640:intron 45.0%
TCTCACTGCACGTACCAATA+TGG - chr4_1:30202373-30202392 Msa0543640:CDS 45.0%
TGCACGTACCAATATGGAGA+TGG - chr4_1:30202379-30202398 Msa0543640:CDS 45.0%
CTCCATGACCATCTCCATAT+TGG + chr4_1:30202390-30202409 None:intergenic 45.0%
ATGCGTATGTCGTTAACGAC+AGG - chr4_1:30202893-30202912 Msa0543640:intron 45.0%
ATTGCAACGCTCAACGGTTA+CGG + chr4_1:30202951-30202970 None:intergenic 45.0%
TTGCACATTGCAACGCTCAA+CGG + chr4_1:30202957-30202976 None:intergenic 45.0%
AGCGTTGCAATGTGCAATCA+TGG - chr4_1:30202960-30202979 Msa0543640:intron 45.0%
GCGTTGCAATGTGCAATCAT+GGG - chr4_1:30202961-30202980 Msa0543640:intron 45.0%
CGTTGCAATGTGCAATCATG+GGG - chr4_1:30202962-30202981 Msa0543640:intron 45.0%
GTTGCAATGTGCAATCATGG+GGG - chr4_1:30202963-30202982 Msa0543640:intron 45.0%
! TTGAGCTTGTTTATTGGGCC+TGG - chr4_1:30203087-30203106 Msa0543640:intron 45.0%
GCTAATACTCACAACAGTCC+AGG + chr4_1:30203108-30203127 None:intergenic 45.0%
CTACTATTTGGACTCCCCAA+AGG + chr4_1:30203130-30203149 None:intergenic 45.0%
! TCATAAGAGCAACGACTTGG+GGG + chr4_1:30203154-30203173 None:intergenic 45.0%
TCAGGATCTGGACAAGCTAA+AGG - chr4_1:30203499-30203518 Msa0543640:intron 45.0%
AATGGAGTAGTGGTCGTACA+AGG + chr4_1:30203645-30203664 None:intergenic 45.0%
!! TGTTGCAGGTAATGGAGTAG+TGG + chr4_1:30203655-30203674 None:intergenic 45.0%
CATGGGAATGTTGCAGGTAA+TGG + chr4_1:30203663-30203682 None:intergenic 45.0%
AATGCACATGGGAATGTTGC+AGG + chr4_1:30203669-30203688 None:intergenic 45.0%
!!! TTATAAATTTGTAATTTTTT+AGG + chr4_1:30198695-30198714 None:intergenic 5.0%
!!! AAGATATATTTTATAAAATT+TGG - chr4_1:30200111-30200130 Msa0543640:intron 5.0%
!!! AGATATATTTTATAAAATTT+GGG - chr4_1:30200112-30200131 Msa0543640:intron 5.0%
AGCCTAATGTGATGCTCCTC+GGG - chr4_1:30199817-30199836 Msa0543640:intron 50.0%
CTAGCCCCAAGGTTAAGCTT+TGG - chr4_1:30200216-30200235 Msa0543640:CDS 50.0%
CCTTCCCTACCTCGTCAAAT+CGG - chr4_1:30200733-30200752 Msa0543640:intron 50.0%
CAGACACCCATGCATTGTTG+AGG + chr4_1:30201511-30201530 None:intergenic 50.0%
AATGCATGGGTGTCTGTGTC+CGG - chr4_1:30201515-30201534 Msa0543640:intron 50.0%
GATTAGACGTGTCCAGTGTG+TGG + chr4_1:30201923-30201942 None:intergenic 50.0%
TTGCAGGCGGAGTTAGAAAG+AGG - chr4_1:30202172-30202191 Msa0543640:CDS 50.0%
GCGGAGTTAGAAAGAGGTGA+AGG - chr4_1:30202178-30202197 Msa0543640:CDS 50.0%
TTGTATGAGCTTGGAACGGC+AGG - chr4_1:30202753-30202772 Msa0543640:intron 50.0%
TGTATGAGCTTGGAACGGCA+GGG - chr4_1:30202754-30202773 Msa0543640:intron 50.0%
TTGAGCGTCAGATGGTATGC+AGG + chr4_1:30202786-30202805 None:intergenic 50.0%
GGACTTTGCAATGTCCCCAA+AGG + chr4_1:30202856-30202875 None:intergenic 50.0%
AACGACAGGAAGTCGTTGCT+CGG - chr4_1:30202907-30202926 Msa0543640:intron 50.0%
AAGTCGTTGCTCGGCAGTTA+CGG - chr4_1:30202916-30202935 Msa0543640:intron 50.0%
! CGACTTGGGGGACTACTATT+TGG + chr4_1:30203142-30203161 None:intergenic 50.0%
! AACTTCAGACTCTGAGGGTC+AGG - chr4_1:30203481-30203500 Msa0543640:intron 50.0%
!! GACCCGAGGAGCATCACATT+AGG + chr4_1:30199822-30199841 None:intergenic 55.0%
!! ATGAAGGTGGTGGAAGGGGA+TGG - chr4_1:30200191-30200210 Msa0543640:CDS 55.0%
!! TGAAGGTGGTGGAAGGGGAT+GGG - chr4_1:30200192-30200211 Msa0543640:CDS 55.0%
! CCGATTTGACGAGGTAGGGA+AGG + chr4_1:30200736-30200755 None:intergenic 55.0%
TACGGACACGGAACACGACA+CGG - chr4_1:30201809-30201828 Msa0543640:intron 55.0%
GTATGAGCTTGGAACGGCAG+GGG - chr4_1:30202755-30202774 Msa0543640:intron 55.0%
TTGCTCGGCAGTTACGGTTG+CGG - chr4_1:30202922-30202941 Msa0543640:intron 55.0%
! AGACTCTGAGGGTCAGGATC+TGG - chr4_1:30203487-30203506 Msa0543640:intron 55.0%
! TTGGGACATGATGGGACCCG+AGG + chr4_1:30199836-30199855 None:intergenic 60.0%
CGGGTCCCATCATGTCCCAA+TGG - chr4_1:30199836-30199855 Msa0543640:intron 60.0%
ACGGAACACGACACGGACAC+TGG - chr4_1:30201816-30201835 Msa0543640:intron 60.0%
TGCTCGGCAGTTACGGTTGC+GGG - chr4_1:30202923-30202942 Msa0543640:intron 60.0%
!! AGGGGATGGGACTAGCCCCA+AGG - chr4_1:30200205-30200224 Msa0543640:CDS 65.0%
! GGGGTGCTCGTAGCAACACG+GGG + chr4_1:30203017-30203036 None:intergenic 65.0%
!! GGGGGTGCTCGTAGCAACAC+GGG + chr4_1:30203018-30203037 None:intergenic 65.0%
!! GGGGGGTGCTCGTAGCAACA+CGG + chr4_1:30203019-30203038 None:intergenic 65.0%
TTCACACTCCCTCCCCGCGA+GGG + chr4_1:30203039-30203058 None:intergenic 65.0%
TGCTACGAGCACCCCCCTCG+CGG - chr4_1:30203022-30203041 Msa0543640:intron 70.0%
TCACACTCCCTCCCCGCGAG+GGG + chr4_1:30203038-30203057 None:intergenic 70.0%
CTTCACACTCCCTCCCCGCG+AGG + chr4_1:30203040-30203059 None:intergenic 70.0%
GCTACGAGCACCCCCCTCGC+GGG - chr4_1:30203023-30203042 Msa0543640:intron 75.0%
CTACGAGCACCCCCCTCGCG+GGG - chr4_1:30203024-30203043 Msa0543640:intron 75.0%
ACACTCCCTCCCCGCGAGGG+GGG + chr4_1:30203036-30203055 None:intergenic 75.0%
CACACTCCCTCCCCGCGAGG+GGG + chr4_1:30203037-30203056 None:intergenic 75.0%
! GAGCACCCCCCTCGCGGGGA+GGG - chr4_1:30203028-30203047 Msa0543640:intron 80.0%
! CGAGCACCCCCCTCGCGGGG+AGG - chr4_1:30203027-30203046 Msa0543640:intron 85.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 30197892 30203814 30197892 ID=Msa0543640;Name=Msa0543640
chr4_1 mRNA 30197892 30203814 30197892 ID=Msa0543640-mRNA-1;Parent=Msa0543640;Name=Msa0543640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=97|0.85|0.75|1|1|1|8|1346|545
chr4_1 exon 30197892 30199528 30197892 ID=Msa0543640-mRNA-1:exon:8012;Parent=Msa0543640-mRNA-1
chr4_1 exon 30200027 30200074 30200027 ID=Msa0543640-mRNA-1:exon:8011;Parent=Msa0543640-mRNA-1
chr4_1 exon 30200183 30200275 30200183 ID=Msa0543640-mRNA-1:exon:8010;Parent=Msa0543640-mRNA-1
chr4_1 exon 30200952 30201090 30200952 ID=Msa0543640-mRNA-1:exon:8009;Parent=Msa0543640-mRNA-1
chr4_1 exon 30201288 30201509 30201288 ID=Msa0543640-mRNA-1:exon:8008;Parent=Msa0543640-mRNA-1
chr4_1 exon 30202113 30202485 30202113 ID=Msa0543640-mRNA-1:exon:8007;Parent=Msa0543640-mRNA-1
chr4_1 exon 30203151 30203415 30203151 ID=Msa0543640-mRNA-1:exon:8006;Parent=Msa0543640-mRNA-1
chr4_1 exon 30203511 30203814 30203511 ID=Msa0543640-mRNA-1:exon:8005;Parent=Msa0543640-mRNA-1
chr4_1 five_prime_UTR 30203718 30203814 30203718 ID=Msa0543640-mRNA-1:five_prime_utr;Parent=Msa0543640-mRNA-1
chr4_1 CDS 30203511 30203717 30203511 ID=Msa0543640-mRNA-1:cds;Parent=Msa0543640-mRNA-1
chr4_1 CDS 30203151 30203415 30203151 ID=Msa0543640-mRNA-1:cds;Parent=Msa0543640-mRNA-1
chr4_1 CDS 30202113 30202485 30202113 ID=Msa0543640-mRNA-1:cds;Parent=Msa0543640-mRNA-1
chr4_1 CDS 30201288 30201509 30201288 ID=Msa0543640-mRNA-1:cds;Parent=Msa0543640-mRNA-1
chr4_1 CDS 30200952 30201090 30200952 ID=Msa0543640-mRNA-1:cds;Parent=Msa0543640-mRNA-1
chr4_1 CDS 30200183 30200275 30200183 ID=Msa0543640-mRNA-1:cds;Parent=Msa0543640-mRNA-1
chr4_1 CDS 30200027 30200074 30200027 ID=Msa0543640-mRNA-1:cds;Parent=Msa0543640-mRNA-1
chr4_1 CDS 30199238 30199528 30199238 ID=Msa0543640-mRNA-1:cds;Parent=Msa0543640-mRNA-1
chr4_1 three_prime_UTR 30197892 30199237 30197892 ID=Msa0543640-mRNA-1:three_prime_utr;Parent=Msa0543640-mRNA-1
Gene Sequence

>Msa0543640

ATGTTGTTGAACTCTTCCTTTAACTCACTTCCTAGTTTCTTCAAATCTCAAGAACTAGGAAGAACTAATAATCTCAGCCATAGAAATGGTTCTCCACTTCTATGTTACGCTACTAATACAAATGTTTCTCAAAAAAGAAAATCAGCCAATTACCAACCCAATATTTGGAATTACGATATCTTACAATCCTTGAAACACGATTATGCGGATGCTCGATACGTGGATAGTAGTAGGAGGTTGCAAGAGGAAGTAAGAAGAATGATCAAGGATGAAAATGTAAAGATATTAGAGTTAATCGATACTGTGAAACACTTAGGCCTCAGTTATCAATTCGAAAAGGAGATAGGAGAAGCCCTTGATAGGTTTTTATCTTTTGAAAAATGCAGTGGTTCAAACAATATTGGCAGAAGTCTTCATGAAACTGCCTTAAGATTTAGGCTCCATCGAGAATATGGTTATGATGTTTCACCAGATATTTTTGAGAAGTTTAAGGACCACAATGGAGATTTTAAGGCATGTCTTGTCCAAGATATCAAAGGAATGTTAAGTCTCTACGAGGCATCATTTCTATCTTATGAAGGAGAACAAATTTTGGATGAAGCCAATGCTTTCACTAGCATCCACCTCAAAGACCTTAGTGAAGGTAGAAGCAGTATCCTCTTTGAACAAGTGAATCATTCATTGGAGCTTCCACTACATCGTAGAGTCCAAAGTCTTGAAGCTCGATGGTATATTGATTCATACGAAAAAAGGAATGACGCAAATAAGGTCTTGCTTGAAGCAGCCAAATTGAATTTCAACATTGTGCAATCAACTCTTCAACAGGATCTTAAAGAAACGTCAAGGTGGTGGAAGGGGATGGGACTAGCCCCAAGGTTAAGCTTTGGTCGTGATAGGCTAATGGAATGTTTCTTTTGGGCTGCTGGAATGACACCATTTGAGCCTCAGTTTAGTGATATGCGCAAGGGTTTAACCAAAGTTTGCTCTCTAATTACTTTAATTGATGACATTTATGATGTTTATGGCACCTTGGATGAATTAGAGCTTTTTACAACGGCGGTAGAAAGTTGGGATATTAATGCAATTCAAATTCTTCCGGAGTATATGAAGATATTCTTCTTGGCACTTTACAACACTGTCAATGATTTCACATATGACACACTTAAAGAAACAGGACATGACATCCTTCCCTACCTCGTCAAATCGTGGTCTGATATGTTGAAAGCATTCCTACAAGAAGCAAGATGGTGTCACAACAAACACATGCCAAAATTTGATGACTACCTCAACAATGCATGGAGACCGTCCATAATTTTTCGACTTTGCAATGATTTGGCTACTTCATCGGCGGAGTTAGAAAGAGGTGAAGGAGCTAATTCAATTATATGCTACATGAATGAAAATGGTGTTAGTGAGGAGGTTGCTTACAAACACATCCAAAATTTGCTTAATGAAAATTGGAAGAAGATGAACAAAGATCGAGTTATCAATTCACCTTCCTCAAAATATTTTTCAGAGACAATAATCAACCTTGCTAGAATTTCTCACTGCACGTACCAATATGGAGATGGTCATGGAGCCCCTGATACCTTAGCAAAGAATCGAATAAAGGCATTAATACTTGAACCAATTAATTAA
Protein sequence

>Msa0543640

MLLNSSFNSLPSFFKSQELGRTNNLSHRNGSPLLCYATNTNVSQKRKSANYQPNIWNYDILQSLKHDYADARYVDSSRRLQEEVRRMIKDENVKILELIDTVKHLGLSYQFEKEIGEALDRFLSFEKCSGSNNIGRSLHETALRFRLHREYGYDVSPDIFEKFKDHNGDFKACLVQDIKGMLSLYEASFLSYEGEQILDEANAFTSIHLKDLSEGRSSILFEQVNHSLELPLHRRVQSLEARWYIDSYEKRNDANKVLLEAAKLNFNIVQSTLQQDLKETSRWWKGMGLAPRLSFGRDRLMECFFWAAGMTPFEPQFSDMRKGLTKVCSLITLIDDIYDVYGTLDELELFTTAVESWDINAIQILPEYMKIFFLALYNTVNDFTYDTLKETGHDILPYLVKSWSDMLKAFLQEARWCHNKHMPKFDDYLNNAWRPSIIFRLCNDLATSSAELERGEGANSIICYMNENGVSEEVAYKHIQNLLNENWKKMNKDRVINSPSSKYFSETIINLARISHCTYQYGDGHGAPDTLAKNRIKALILEPIN*