AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553570 MtrunA17_Chr4g0039301 93.084 535 25 3 1 524 1 534 0.0 996
Msa0553570 MtrunA17_Chr7g0260671 50.312 481 219 11 37 507 25 495 7.62e-168 484
Msa0553570 MtrunA17_Chr7g0260681 51.571 382 163 10 61 433 52 420 3.82e-136 400
Msa0553570 MtrunA17_Chr2g0283561 43.415 410 195 8 89 485 38 423 1.22e-106 325
Msa0553570 MtrunA17_Chr4g0046011 40.618 421 211 9 89 500 3 393 7.70e-99 304
Msa0553570 MtrunA17_Chr4g0046001 39.192 421 217 9 89 500 12 402 3.50e-96 298
Msa0553570 MtrunA17_Chr7g0214711 45.429 350 160 10 90 431 105 431 2.78e-94 296
Msa0553570 MtrunA17_Chr4g0041311 36.111 432 215 9 92 490 30 433 1.16e-86 274
Msa0553570 MtrunA17_Chr5g0399641 38.303 389 204 7 80 450 125 495 2.59e-82 266
Msa0553570 MtrunA17_Chr7g0250561 39.695 393 187 9 94 451 73 450 3.17e-81 260
Msa0553570 MtrunA17_Chr7g0250611 39.410 373 185 9 89 447 74 419 8.80e-80 256
Msa0553570 MtrunA17_Chr4g0055691 40.157 381 199 8 80 450 119 480 5.43e-77 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553570 AT1G51440.1 70.370 432 115 5 88 508 85 514 0.0 649
Msa0553570 AT1G06800.1 51.081 509 226 10 12 504 3 504 0.0 519
Msa0553570 AT2G30550.2 56.109 442 179 7 73 505 86 521 1.10e-177 511
Msa0553570 AT1G06800.2 50.343 437 196 8 12 433 3 433 5.94e-151 439
Msa0553570 AT2G30550.1 56.757 370 146 6 73 434 86 449 1.90e-148 434
Msa0553570 AT1G30370.1 43.287 432 212 9 85 504 109 519 8.71e-120 363
Msa0553570 AT1G05800.1 47.592 353 157 9 88 432 78 410 7.92e-99 307
Msa0553570 AT2G31690.1 45.658 357 167 11 85 432 83 421 1.53e-95 299
Msa0553570 AT1G06250.1 39.753 405 208 7 94 485 9 390 8.55e-93 290
Msa0553570 AT4G18550.1 40.394 406 204 10 94 485 23 404 4.75e-92 288
Msa0553570 AT4G18550.2 40.394 406 204 10 94 485 40 421 7.95e-92 288
Msa0553570 AT2G42690.1 36.659 431 216 9 94 494 8 411 5.83e-86 271
Msa0553570 AT2G44810.2 40.000 385 181 11 88 447 84 443 1.87e-83 266
Msa0553570 AT2G44810.1 40.318 377 175 11 96 447 2 353 1.37e-82 261
Msa0553570 AT4G16820.1 40.052 387 186 9 82 449 119 478 2.21e-78 255
Msa0553570 AT4G18550.3 42.105 266 139 7 94 348 40 301 9.05e-63 208
Msa0553570 AT1G06250.2 40.134 299 148 5 195 485 1 276 1.01e-62 207
Msa0553570 AT5G18630.3 30.818 159 88 5 215 371 100 238 5.02e-11 64.3
Msa0553570 AT5G18640.5 30.818 159 88 5 215 371 100 238 5.71e-11 63.9
Msa0553570 AT5G18630.1 30.818 159 88 5 215 371 101 239 5.91e-11 64.7
Msa0553570 AT5G18630.2 30.818 159 88 5 215 371 100 238 6.37e-11 64.7
Msa0553570 AT5G18640.1 30.818 159 88 5 215 371 100 238 9.55e-11 63.9
Msa0553570 AT5G18640.3 30.818 159 88 5 215 371 100 238 9.55e-11 63.9

Find 133 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGAACTGAAATTAAAT+TGG 0.207992 4_1:-50865481 Msa0553570:CDS
AATTTAATATGGTTTCAAAA+AGG 0.225064 4_1:-50865353 Msa0553570:CDS
TTAGATTTCTTGAAGAATTT+AGG 0.245553 4_1:+50868374 None:intergenic
AATAATATAGGCGAATTATT+AGG 0.269443 4_1:+50868761 None:intergenic
CCTGTTTCTACTTTGATTGA+TGG 0.275271 4_1:+50865939 None:intergenic
TTTGAAGGAGAATGGTGATT+TGG 0.293933 4_1:-50865439 Msa0553570:CDS
GCTTACGACATAGCCGAATT+AGG 0.294321 4_1:-50865747 Msa0553570:CDS
AGTGCATGATTGTTCTTTCT+TGG 0.310274 4_1:+50865899 None:intergenic
TGGTGGGAATGGGAATGATA+TGG 0.331301 4_1:+50868842 None:intergenic
AAATCCAAGGCGATAACAAC+TGG 0.343166 4_1:-50868613 Msa0553570:CDS
TTAATTGATAAGTATATATA+AGG 0.353134 4_1:-50865013 Msa0553570:three_prime_UTR
TTGAAGGAGAATGGTGATTT+GGG 0.359827 4_1:-50865438 Msa0553570:CDS
TGCATAGAGGTAGCGGCTTA+TGG 0.364333 4_1:+50868415 None:intergenic
GATTAGAGATATATAATATA+AGG 0.368827 4_1:+50868996 None:intergenic
GATGATGTTCACTCCTAATT+CGG 0.369822 4_1:+50865734 None:intergenic
GGCTTTCGTTGAGCGATGTA+TGG 0.379405 4_1:-50868640 Msa0553570:CDS
CGCGAACGAGTAAACCGTTA+TGG 0.379883 4_1:+50865683 None:intergenic
GGAAAGGAAAAGGGTATTGT+TGG 0.381722 4_1:+50868790 None:intergenic
CGTTCGCGGGGCCGAGAGTT+GGG 0.383970 4_1:-50865668 Msa0553570:CDS
GGGATGTACACATAATTTAG+AGG 0.384508 4_1:-50865418 Msa0553570:CDS
CAAATCACGTGGTCCTTGAT+TGG 0.386663 4_1:+50865115 None:intergenic
ATAAGAGTTGTGATCTTCTA+AGG 0.392001 4_1:-50865314 Msa0553570:CDS
TGGAGACAAGATGAGAATAA+AGG 0.404006 4_1:-50865267 Msa0553570:CDS
ACAGAAGCCATGCGAGGAAC+TGG 0.405029 4_1:+50868911 None:intergenic
TGTGGAGCCCTTATGCTAAC+TGG 0.405947 4_1:-50868340 Msa0553570:CDS
CTTCCCAGTTGTTATCGCCT+TGG 0.418732 4_1:+50868609 None:intergenic
TTGAAACTGAAATTTCTCAT+TGG 0.419763 4_1:+50865548 None:intergenic
TCGTTCGCGGGGCCGAGAGT+TGG 0.421350 4_1:-50865669 Msa0553570:CDS
GGAATTTGCACTTTAAAGAA+AGG 0.421543 4_1:-50865647 Msa0553570:CDS
TAATAGAGTGATGGTAATAA+AGG 0.421592 4_1:+50869057 None:intergenic
GCAAGATGATGTGCAATATC+TGG 0.423197 4_1:+50865180 None:intergenic
CATCTTCCTCTTCGTGCAGT+TGG 0.426552 4_1:+50868705 None:intergenic
TTCTCATTGGTTATAATCCC+CGG 0.428050 4_1:+50865561 None:intergenic
GACAAGGTTCCAACCGTGCC+GGG 0.432120 4_1:-50865579 Msa0553570:CDS
AAAGGGTATTGTTGGATTTG+TGG 0.432416 4_1:+50868798 None:intergenic
GCTTCCACTAGAGGCCGTTC+AGG 0.434299 4_1:+50865210 None:intergenic
GAAGAAGAGATTAAACGTTT+AGG 0.434314 4_1:-50868290 Msa0553570:CDS
TGATGCTGATTTCTTCATCT+TGG 0.436804 4_1:+50865814 None:intergenic
CCTTGGAGTTATGCTCATGT+TGG 0.439341 4_1:-50865498 Msa0553570:CDS
CCATCAATCAAAGTAGAAAC+AGG 0.440706 4_1:-50865939 Msa0553570:CDS
CTGTTTCTACTTTGATTGAT+GGG 0.442102 4_1:+50865940 None:intergenic
TATCCCATCCAGTTAGCATA+AGG 0.442825 4_1:+50868332 None:intergenic
TTTAATCTCTTCTTCGTTGG+TGG 0.443070 4_1:+50868298 None:intergenic
GATCTTCTAAGGAGTGAGTT+TGG 0.443725 4_1:-50865303 Msa0553570:CDS
TTGAATATAGATGGTGGGAA+TGG 0.451272 4_1:+50868831 None:intergenic
GCGAACGAGTAAACCGTTAT+GGG 0.455006 4_1:+50865684 None:intergenic
GTTATAATCCCCGGCACGGT+TGG 0.455037 4_1:+50865570 None:intergenic
ATAACGGTTTACTCGTTCGC+GGG 0.455590 4_1:-50865681 Msa0553570:CDS
TGAATATAGATGGTGGGAAT+GGG 0.456911 4_1:+50868832 None:intergenic
CGTTTAGGACGCCGTGACAT+AGG 0.461230 4_1:-50868275 Msa0553570:intron
TATGTATGTTTCATTTAGCT+AGG 0.466276 4_1:-50864948 Msa0553570:three_prime_UTR
CATTTGATGGATGGGTATCA+TGG 0.469639 4_1:-50865387 Msa0553570:CDS
GAGCATTTGAGAAATAATAT+AGG 0.470692 4_1:+50868749 None:intergenic
AAAGAAAGGTGTGAAGAACT+TGG 0.475583 4_1:-50865633 Msa0553570:CDS
AAACAAGATGATGGATGTAA+AGG 0.476717 4_1:-50865078 Msa0553570:three_prime_UTR
GGTGGGAATGGGAATGATAT+GGG 0.482096 4_1:+50868843 None:intergenic
TATGTCGTAAGCGCTGAGTA+TGG 0.482762 4_1:+50865758 None:intergenic
GGAATGGTTCAAACCGATGA+TGG 0.487340 4_1:-50865246 Msa0553570:CDS
TATATAGATTTAAAATATGT+GGG 0.487696 4_1:-50864917 Msa0553570:three_prime_UTR
GTATATAGATTTAAAATATG+TGG 0.493672 4_1:-50864918 Msa0553570:three_prime_UTR
ATGATTTCTTTGCGTAGGAT+AGG 0.496867 4_1:+50868566 None:intergenic
ACGTTTAATCTCTTCTTCGT+TGG 0.501727 4_1:+50868295 None:intergenic
CACAACCCACCTTCCATCAT+CGG 0.503475 4_1:+50865233 None:intergenic
GGAGGCTAGAATGTTGGTTG+AGG 0.504919 4_1:+50868864 None:intergenic
AGGGTGTTATGAAGAAGAAC+AGG 0.507123 4_1:+50868884 None:intergenic
AAGAAACTTTACATGGGAGA+TGG 0.511262 4_1:-50868443 Msa0553570:CDS
GATCAAAACTCAAAATATTG+TGG 0.513294 4_1:-50868497 Msa0553570:CDS
TGACAAGGTTCCAACCGTGC+CGG 0.514175 4_1:-50865580 Msa0553570:CDS
TTTCTTTAAGAAACTTTACA+TGG 0.516670 4_1:-50868450 Msa0553570:CDS
GAGGCTAGAATGTTGGTTGA+GGG 0.517399 4_1:+50868865 None:intergenic
TTGCGTAGGATAGGATCCAT+TGG 0.518415 4_1:+50868575 None:intergenic
GCATTGGTAGCTTCCAATCA+AGG 0.520891 4_1:-50865128 Msa0553570:CDS
TGTGCCTGAACGGCCTCTAG+TGG 0.525389 4_1:-50865214 Msa0553570:CDS
AAGTGCAAATTCCCAACTCT+CGG 0.525702 4_1:+50865657 None:intergenic
GCACCGTGACATATATAGAA+TGG 0.529593 4_1:-50866010 Msa0553570:CDS
CTGTTTATATAGTGATTGCA+TGG 0.532261 4_1:-50866037 Msa0553570:intron
GGAAGGTCTATTAGATCCAA+TGG 0.534597 4_1:-50868591 Msa0553570:CDS
TTATATAGTGATTGCATGGA+GGG 0.534861 4_1:-50866033 Msa0553570:intron
ATCCCATCCAGTTAGCATAA+GGG 0.536253 4_1:+50868333 None:intergenic
GAGCCCTTATGCTAACTGGA+TGG 0.539926 4_1:-50868336 Msa0553570:CDS
GATATGGGAGGCTAGAATGT+TGG 0.542184 4_1:+50868858 None:intergenic
TTCGTGCAGTTGGTTCATAG+TGG 0.544421 4_1:+50868715 None:intergenic
CGTAAGCGCTGAGTATGGCT+AGG 0.545238 4_1:+50865763 None:intergenic
CGCAAAGAAATCATTCGCTA+TGG 0.545659 4_1:-50868557 Msa0553570:CDS
ATGTATGTTTCATTTAGCTA+GGG 0.547172 4_1:-50864947 Msa0553570:three_prime_UTR
AGTTTCTTAAAGAAATGTGC+AGG 0.549504 4_1:+50868458 None:intergenic
AAAGTATATAGAAGATACAT+TGG 0.550653 4_1:-50865526 Msa0553570:CDS
TTGATGTTGCATAGAGGTAG+CGG 0.552703 4_1:+50868408 None:intergenic
ATTTCTTGAAGAATTTAGGA+AGG 0.554007 4_1:+50868378 None:intergenic
GAAATCAGCATCACAGTCAC+AGG 0.555372 4_1:-50865804 Msa0553570:CDS
ACAGTCACAGGACACAGTCT+TGG 0.567549 4_1:-50865792 Msa0553570:CDS
AACAACTAACGTCCCCATAA+CGG 0.568948 4_1:-50865697 Msa0553570:CDS
TTCTCATCTTGTCTCCAATG+TGG 0.570582 4_1:+50865273 None:intergenic
AGTTTGGTGTTCCACCACAT+TGG 0.571065 4_1:-50865287 Msa0553570:CDS
TCAAGATGTTAATGGCTCGT+TGG 0.578326 4_1:+50868970 None:intergenic
AATCGCATTCAAAATCGCAT+TGG 0.579406 4_1:-50865144 Msa0553570:CDS
CATAACGGTTTACTCGTTCG+CGG 0.581601 4_1:-50865682 Msa0553570:CDS
ACAAGATGAGAATAAAGGAA+TGG 0.583658 4_1:-50865262 Msa0553570:CDS
GAAGGTGGGTTGTGCCTGAA+CGG 0.583884 4_1:-50865224 Msa0553570:CDS
AGCCCTTATGCTAACTGGAT+GGG 0.586402 4_1:-50868335 Msa0553570:CDS
TCATCTTGTCTCCAATGTGG+TGG 0.589893 4_1:+50865276 None:intergenic
GGTGGATGAGCTTCCACTAG+AGG 0.592564 4_1:+50865201 None:intergenic
GTAGAATAAAAGATAGAGAG+TGG 0.592789 4_1:-50868936 Msa0553570:five_prime_UTR
TGGTTCAAACCGATGATGGA+AGG 0.596118 4_1:-50865242 Msa0553570:CDS
TTCAAACCGATGATGGAAGG+TGG 0.599261 4_1:-50865239 Msa0553570:CDS
ATTGGTTATAATCCCCGGCA+CGG 0.605638 4_1:+50865566 None:intergenic
TATCCATTCTATATATGTCA+CGG 0.607117 4_1:+50866007 None:intergenic
AGCGAATGATTTCTTTGCGT+AGG 0.609122 4_1:+50868561 None:intergenic
AGTGGATCCAGTTCCTCGCA+TGG 0.619140 4_1:-50868918 Msa0553570:exon
ACAAGGTTCCAACCGTGCCG+GGG 0.622173 4_1:-50865578 Msa0553570:CDS
TATATAGTGATTGCATGGAG+GGG 0.625995 4_1:-50866032 Msa0553570:intron
TTTATATAGTGATTGCATGG+AGG 0.627945 4_1:-50866034 Msa0553570:intron
TATGAACCAACTGCACGAAG+AGG 0.628820 4_1:-50868711 Msa0553570:CDS
ATTTGATGGATGGGTATCAT+GGG 0.630818 4_1:-50865386 Msa0553570:CDS
CAAGGCGATAACAACTGGGA+AGG 0.632086 4_1:-50868608 Msa0553570:CDS
TAACGGTTTACTCGTTCGCG+GGG 0.632196 4_1:-50865680 Msa0553570:CDS
TTCTTTAAGAAACTTTACAT+GGG 0.638039 4_1:-50868449 Msa0553570:CDS
GTAAGCGCTGAGTATGGCTA+GGG 0.639224 4_1:+50865764 None:intergenic
GGAGTGAACATCATCGAAGA+CGG 0.642474 4_1:-50865726 Msa0553570:CDS
TGATGTTTGATGTTGCATAG+AGG 0.642978 4_1:+50868402 None:intergenic
AATCCAAGGCGATAACAACT+GGG 0.645053 4_1:-50868612 Msa0553570:CDS
AAGAAGAAGAAGAATCATCA+CGG 0.652198 4_1:-50868661 Msa0553570:CDS
CGAACGAGTAAACCGTTATG+GGG 0.657882 4_1:+50865685 None:intergenic
CCAACATGAGCATAACTCCA+AGG 0.660120 4_1:+50865498 None:intergenic
TAGGGTACATACCTATGTCA+CGG 0.660260 4_1:+50868264 None:intergenic
AATCTAAGATCTCTTCAGTG+TGG 0.668543 4_1:-50868358 Msa0553570:CDS
GATGTATGGAGAGAAATCCA+AGG 0.668805 4_1:-50868626 Msa0553570:CDS
TCAAACCGATGATGGAAGGT+GGG 0.670175 4_1:-50865238 Msa0553570:CDS
TCACACGAGTAATAGAGTGA+TGG 0.670663 4_1:+50869048 None:intergenic
GGGAATGGGAATGATATGGG+AGG 0.682214 4_1:+50868846 None:intergenic
AGATGATGTGCAATATCTGG+TGG 0.691855 4_1:+50865183 None:intergenic
AATACATAATATTCATGACA+AGG 0.698783 4_1:-50865595 Msa0553570:CDS
GGTACAACAGAAGCCATGCG+AGG 0.705663 4_1:+50868905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATAAAAAAAATA+AGG - chr4_1:50866268-50866287 Msa0553570:intron 0.0%
!! AAAAAAAATAAAAAAAATAA+GGG - chr4_1:50866269-50866288 Msa0553570:intron 0.0%
!! AAAAAATAATAATAATAAAA+AGG + chr4_1:50867836-50867855 None:intergenic 0.0%
!!! TTAATTAAATTAAGAGTATA+GGG + chr4_1:50865718-50865737 None:intergenic 10.0%
!!! TTATTACTTTTGATTTTTTA+GGG + chr4_1:50866192-50866211 None:intergenic 10.0%
!!! TTTATTACTTTTGATTTTTT+AGG + chr4_1:50866193-50866212 None:intergenic 10.0%
!! AAAACTATTAAAATTAAGTA+AGG + chr4_1:50866343-50866362 None:intergenic 10.0%
!!! TAAGTAATTTTTTTTTTGTA+GGG + chr4_1:50866372-50866391 None:intergenic 10.0%
!!! ATAAGTAATTTTTTTTTTGT+AGG + chr4_1:50866373-50866392 None:intergenic 10.0%
!!! ATGTTTTTAAAAGAAATAAT+TGG - chr4_1:50867608-50867627 Msa0553570:intron 10.0%
!! GAAAGATAAAAAATTTAATA+TGG - chr4_1:50868597-50868616 Msa0553570:CDS 10.0%
!! TTAATTGATAAGTATATATA+AGG - chr4_1:50868948-50868967 Msa0553570:five_prime_UTR 10.0%
!!! TATATAGATTTAAAATATGT+GGG - chr4_1:50869044-50869063 Msa0553570:five_prime_UTR 10.0%
!! GATTAGAGATATATAATATA+AGG + chr4_1:50864968-50864987 None:intergenic 15.0%
!!! GTTAATTAAATTAAGAGTAT+AGG + chr4_1:50865719-50865738 None:intergenic 15.0%
!!! ATATAAATATATGGTCTTTT+GGG + chr4_1:50865785-50865804 None:intergenic 15.0%
!!! AATATAAATATATGGTCTTT+TGG + chr4_1:50865786-50865805 None:intergenic 15.0%
!! TCAGAAACAATATAAATATA+TGG + chr4_1:50865794-50865813 None:intergenic 15.0%
!!! AATATTAACAACTTTTAATG+CGG - chr4_1:50866082-50866101 Msa0553570:intron 15.0%
!!! TATTACTTTTGATTTTTTAG+GGG + chr4_1:50866191-50866210 None:intergenic 15.0%
!! TCAAAAGTAATAAAATTCAT+TGG - chr4_1:50866199-50866218 Msa0553570:intron 15.0%
!!! TTTTTTGAGATAAAATTCAT+TGG - chr4_1:50866230-50866249 Msa0553570:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr4_1:50866405-50866424 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr4_1:50866406-50866425 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr4_1:50866565-50866584 Msa0553570:intron 15.0%
!!! AATTTTTGCGATATTTTTTT+AGG - chr4_1:50866600-50866619 Msa0553570:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr4_1:50866684-50866703 Msa0553570:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr4_1:50866756-50866775 Msa0553570:intron 15.0%
!! AATTAACCCAAAAAATAAAA+AGG - chr4_1:50866821-50866840 Msa0553570:intron 15.0%
!!! TTTAAGCCTTTTTATTTTTT+GGG + chr4_1:50866830-50866849 None:intergenic 15.0%
!!! TTTTAAGCCTTTTTATTTTT+TGG + chr4_1:50866831-50866850 None:intergenic 15.0%
!! AATGAAGGTAAAAAAAAAAT+AGG + chr4_1:50866958-50866977 None:intergenic 15.0%
!!! TTTTCAATTTACAATAATGA+AGG + chr4_1:50866973-50866992 None:intergenic 15.0%
!!! AATCAAACAGTTTTAAAAAA+TGG - chr4_1:50867055-50867074 Msa0553570:intron 15.0%
!!! ATCAAACAGTTTTAAAAAAT+GGG - chr4_1:50867056-50867075 Msa0553570:intron 15.0%
!! ACTAAAAAAAGAAAAAAGAA+AGG - chr4_1:50867453-50867472 Msa0553570:intron 15.0%
!! CTAAAAAAAGAAAAAAGAAA+GGG - chr4_1:50867454-50867473 Msa0553570:intron 15.0%
!! ATTTCAATTATATATTGAGA+TGG + chr4_1:50867548-50867567 None:intergenic 15.0%
!!! AAAAAACTAGTATTTTTCTA+TGG + chr4_1:50867748-50867767 None:intergenic 15.0%
!! AATTTAATATGGTTTCAAAA+AGG - chr4_1:50868608-50868627 Msa0553570:CDS 15.0%
!! ATTTAATATGGTTTCAAAAA+GGG - chr4_1:50868609-50868628 Msa0553570:CDS 15.0%
!!! ATACATACTTTTTTTTTAAG+AGG + chr4_1:50869000-50869019 None:intergenic 15.0%
!!! GTATATAGATTTAAAATATG+TGG - chr4_1:50869043-50869062 Msa0553570:five_prime_UTR 15.0%
!! AAAAATCATCAAGATGTTAA+TGG + chr4_1:50865002-50865021 None:intergenic 20.0%
!!! TGATTGATTTTGAATATAGA+TGG + chr4_1:50865142-50865161 None:intergenic 20.0%
!!! AATTATTAGGTTTTTTGGAA+AGG + chr4_1:50865190-50865209 None:intergenic 20.0%
!! AATAATATAGGCGAATTATT+AGG + chr4_1:50865203-50865222 None:intergenic 20.0%
!!! TTTCTTTAAGAAACTTTACA+TGG - chr4_1:50865511-50865530 Msa0553570:CDS 20.0%
!!! TTCTTTAAGAAACTTTACAT+GGG - chr4_1:50865512-50865531 Msa0553570:CDS 20.0%
!! TTAGATTTCTTGAAGAATTT+AGG + chr4_1:50865590-50865609 None:intergenic 20.0%
!!! ATAAGGGTTAAATATGTTTT+TGG - chr4_1:50866285-50866304 Msa0553570:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr4_1:50866654-50866673 None:intergenic 20.0%
!!! TTTTGGGTTAATTATGTTTT+TGG + chr4_1:50866814-50866833 None:intergenic 20.0%
!! ACAAACTCGTAAATTAAAAA+TGG + chr4_1:50867021-50867040 None:intergenic 20.0%
!!! TCAAACAGTTTTAAAAAATG+GGG - chr4_1:50867057-50867076 Msa0553570:intron 20.0%
!!! AAAACACTTAATTTTTCAAG+TGG + chr4_1:50867255-50867274 None:intergenic 20.0%
!! AGAGAGAAAATCATTATTTA+TGG + chr4_1:50867318-50867337 None:intergenic 20.0%
!! GAATATTGCTATAAAAAAGA+TGG + chr4_1:50867501-50867520 None:intergenic 20.0%
!! TTAAAAGAAATAATTGGTGA+CGG - chr4_1:50867614-50867633 Msa0553570:intron 20.0%
!! AACCACTATAATTATTGTTA+TGG + chr4_1:50867707-50867726 None:intergenic 20.0%
!! ATTGTTCTTCAAAAAAGTAA+AGG - chr4_1:50867798-50867817 Msa0553570:intron 20.0%
!! ATAATAATAAAAAGGTCCAA+GGG + chr4_1:50867828-50867847 None:intergenic 20.0%
!! AATAATAATAAAAAGGTCCA+AGG + chr4_1:50867829-50867848 None:intergenic 20.0%
!! AATACATAATATTCATGACA+AGG - chr4_1:50868366-50868385 Msa0553570:CDS 20.0%
!! AAAGTATATAGAAGATACAT+TGG - chr4_1:50868435-50868454 Msa0553570:CDS 20.0%
! TAATAGAGTGATGGTAATAA+AGG + chr4_1:50864907-50864926 None:intergenic 25.0%
!! TGATTTTGAATATAGATGGT+GGG + chr4_1:50865138-50865157 None:intergenic 25.0%
!! TTGATTTTGAATATAGATGG+TGG + chr4_1:50865139-50865158 None:intergenic 25.0%
! GAGCATTTGAGAAATAATAT+AGG + chr4_1:50865215-50865234 None:intergenic 25.0%
! GATCAAAACTCAAAATATTG+TGG - chr4_1:50865464-50865483 Msa0553570:CDS 25.0%
! ATTTCTTGAAGAATTTAGGA+AGG + chr4_1:50865586-50865605 None:intergenic 25.0%
! TTATTGGCAAAAAAAACATG+TGG - chr4_1:50866000-50866019 Msa0553570:CDS 25.0%
! TATTGGCAAAAAAAACATGT+GGG - chr4_1:50866001-50866020 Msa0553570:CDS 25.0%
! GAAAGAAAAAAGTTTGTGAT+TGG - chr4_1:50866031-50866050 Msa0553570:intron 25.0%
!!! TTTTGCGATATTTTTTTAGG+AGG - chr4_1:50866603-50866622 Msa0553570:intron 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr4_1:50866630-50866649 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr4_1:50866695-50866714 Msa0553570:intron 25.0%
! TAAAAAGGCTTAAAACGATA+CGG - chr4_1:50866836-50866855 Msa0553570:intron 25.0%
!!! AGAGTTTAACTTTAAAACAG+AGG - chr4_1:50867120-50867139 Msa0553570:intron 25.0%
! CTTGAACTAGTTATCTATTA+AGG - chr4_1:50867148-50867167 Msa0553570:intron 25.0%
! TCAATTATATATTGAGATGG+TGG + chr4_1:50867545-50867564 None:intergenic 25.0%
!! TATTGTTATGGAGAACATTT+TGG + chr4_1:50867695-50867714 None:intergenic 25.0%
! CTCCATAACAATAATTATAG+TGG - chr4_1:50867702-50867721 Msa0553570:intron 25.0%
! TATCCATTCTATATATGTCA+CGG + chr4_1:50867957-50867976 None:intergenic 25.0%
! TTGAAACTGAAATTTCTCAT+TGG + chr4_1:50868416-50868435 None:intergenic 25.0%
! TGTTGGAACTGAAATTAAAT+TGG - chr4_1:50868480-50868499 Msa0553570:CDS 25.0%
!!! TAGAAATAGTCCTTTTTTGA+AGG - chr4_1:50868507-50868526 Msa0553570:CDS 25.0%
! TATGTATGTTTCATTTAGCT+AGG - chr4_1:50869013-50869032 Msa0553570:five_prime_UTR 25.0%
! ATGTATGTTTCATTTAGCTA+GGG - chr4_1:50869014-50869033 Msa0553570:five_prime_UTR 25.0%
GTAGAATAAAAGATAGAGAG+TGG - chr4_1:50865025-50865044 Msa0553570:three_prime_UTR 30.0%
!!! AGGTTTTTTGGAAAGGAAAA+GGG + chr4_1:50865183-50865202 None:intergenic 30.0%
!!! TAGGTTTTTTGGAAAGGAAA+AGG + chr4_1:50865184-50865203 None:intergenic 30.0%
!!! AGGCGAATTATTAGGTTTTT+TGG + chr4_1:50865195-50865214 None:intergenic 30.0%
AAGAAGAAGAAGAATCATCA+CGG - chr4_1:50865300-50865319 Msa0553570:CDS 30.0%
AGTTTCTTAAAGAAATGTGC+AGG + chr4_1:50865506-50865525 None:intergenic 30.0%
GAAGAAGAGATTAAACGTTT+AGG - chr4_1:50865671-50865690 Msa0553570:CDS 30.0%
! ACTGACTTAGATGTATACAA+TGG - chr4_1:50865857-50865876 Msa0553570:CDS 30.0%
!!! TTTGCTATTCTTTTGACATG+TGG - chr4_1:50865971-50865990 Msa0553570:CDS 30.0%
!! TTGCTATTCTTTTGACATGT+GGG - chr4_1:50865972-50865991 Msa0553570:CDS 30.0%
AGAAAAAAGTTTGTGATTGG+TGG - chr4_1:50866034-50866053 Msa0553570:intron 30.0%
! TAGAAGGTCGCAATTTTATA+GGG + chr4_1:50866312-50866331 None:intergenic 30.0%
! TTAGAAGGTCGCAATTTTAT+AGG + chr4_1:50866313-50866332 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr4_1:50866328-50866347 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr4_1:50866726-50866745 Msa0553570:intron 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr4_1:50866727-50866746 Msa0553570:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr4_1:50866771-50866790 Msa0553570:intron 30.0%
AAAAAATGGGGAATTAACTG+TGG - chr4_1:50867069-50867088 Msa0553570:intron 30.0%
ACTAATTGACCACTTTACAA+CGG - chr4_1:50867093-50867112 Msa0553570:intron 30.0%
TTTAGTTATGTTTGTGCGTA+AGG + chr4_1:50867439-50867458 None:intergenic 30.0%
!! ATGGAGAACATTTTGGTATT+TGG + chr4_1:50867688-50867707 None:intergenic 30.0%
CTGTTTATATAGTGATTGCA+TGG - chr4_1:50867924-50867943 Msa0553570:intron 30.0%
TTTATATAGTGATTGCATGG+AGG - chr4_1:50867927-50867946 Msa0553570:intron 30.0%
TTATATAGTGATTGCATGGA+GGG - chr4_1:50867928-50867947 Msa0553570:intron 30.0%
!! CTGTTTCTACTTTGATTGAT+GGG + chr4_1:50868024-50868043 None:intergenic 30.0%
! GGAATTTGCACTTTAAAGAA+AGG - chr4_1:50868314-50868333 Msa0553570:CDS 30.0%
!! TACTTTTGCATTTGATGGAT+GGG - chr4_1:50868566-50868585 Msa0553570:CDS 30.0%
ATAAGAGTTGTGATCTTCTA+AGG - chr4_1:50868647-50868666 Msa0553570:CDS 30.0%
ACAAGATGAGAATAAAGGAA+TGG - chr4_1:50868699-50868718 Msa0553570:CDS 30.0%
!!! CACGTGATTTGTTTTTAGTA+GGG - chr4_1:50868858-50868877 Msa0553570:CDS 30.0%
!! AAACAAGATGATGGATGTAA+AGG - chr4_1:50868883-50868902 Msa0553570:CDS 30.0%
TAAGGTGTGTGTGTGTATAT+GGG + chr4_1:50864950-50864969 None:intergenic 35.0%
ATAAGGTGTGTGTGTGTATA+TGG + chr4_1:50864951-50864970 None:intergenic 35.0%
!! TGAATATAGATGGTGGGAAT+GGG + chr4_1:50865132-50865151 None:intergenic 35.0%
!! TTGAATATAGATGGTGGGAA+TGG + chr4_1:50865133-50865152 None:intergenic 35.0%
!! AAAGGGTATTGTTGGATTTG+TGG + chr4_1:50865166-50865185 None:intergenic 35.0%
ATGATTTCTTTGCGTAGGAT+AGG + chr4_1:50865398-50865417 None:intergenic 35.0%
AAGAAACTTTACATGGGAGA+TGG - chr4_1:50865518-50865537 Msa0553570:CDS 35.0%
TGATGTTTGATGTTGCATAG+AGG + chr4_1:50865562-50865581 None:intergenic 35.0%
! AATCTAAGATCTCTTCAGTG+TGG - chr4_1:50865603-50865622 Msa0553570:CDS 35.0%
TTTAATCTCTTCTTCGTTGG+TGG + chr4_1:50865666-50865685 None:intergenic 35.0%
ACGTTTAATCTCTTCTTCGT+TGG + chr4_1:50865669-50865688 None:intergenic 35.0%
!!! TGACATGTGGGTTTTGTTAT+TGG - chr4_1:50865984-50866003 Msa0553570:CDS 35.0%
TGCGGAGATAGAGAAATTTA+TGG - chr4_1:50866100-50866119 Msa0553570:intron 35.0%
! CAAGTTTAGAACACTATGAC+AGG - chr4_1:50866468-50866487 Msa0553570:intron 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr4_1:50866786-50866805 Msa0553570:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr4_1:50866787-50866806 Msa0553570:intron 35.0%
ATAATAAAAAGGTCCAAGGG+CGG + chr4_1:50867825-50867844 None:intergenic 35.0%
TATATAGTGATTGCATGGAG+GGG - chr4_1:50867929-50867948 Msa0553570:intron 35.0%
! CTTCGTGTAGAATGTCTTTT+AGG + chr4_1:50867985-50868004 None:intergenic 35.0%
!! CCTGTTTCTACTTTGATTGA+TGG + chr4_1:50868025-50868044 None:intergenic 35.0%
CCATCAATCAAAGTAGAAAC+AGG - chr4_1:50868022-50868041 Msa0553570:intron 35.0%
AGTGCATGATTGTTCTTTCT+TGG + chr4_1:50868065-50868084 None:intergenic 35.0%
!!! GAAGTCGTTTTATTTCTGAG+AGG + chr4_1:50868117-50868136 None:intergenic 35.0%
!! TGATGCTGATTTCTTCATCT+TGG + chr4_1:50868150-50868169 None:intergenic 35.0%
GATGATGTTCACTCCTAATT+CGG + chr4_1:50868230-50868249 None:intergenic 35.0%
! AAAGAAAGGTGTGAAGAACT+TGG - chr4_1:50868328-50868347 Msa0553570:CDS 35.0%
! TTCTCATTGGTTATAATCCC+CGG + chr4_1:50868403-50868422 None:intergenic 35.0%
!!! AAGATACATTGGCTTTTCCT+TGG - chr4_1:50868446-50868465 Msa0553570:CDS 35.0%
!!! AGTCCTTTTTTGAAGGAGAA+TGG - chr4_1:50868514-50868533 Msa0553570:CDS 35.0%
TCACCATTCTCCTTCAAAAA+AGG + chr4_1:50868520-50868539 None:intergenic 35.0%
TTTGAAGGAGAATGGTGATT+TGG - chr4_1:50868522-50868541 Msa0553570:CDS 35.0%
TTGAAGGAGAATGGTGATTT+GGG - chr4_1:50868523-50868542 Msa0553570:CDS 35.0%
GGGATGTACACATAATTTAG+AGG - chr4_1:50868543-50868562 Msa0553570:CDS 35.0%
!!! AGAGGTACTTTTGCATTTGA+TGG - chr4_1:50868561-50868580 Msa0553570:CDS 35.0%
! GTACTTTTGCATTTGATGGA+TGG - chr4_1:50868565-50868584 Msa0553570:CDS 35.0%
! ATTTGATGGATGGGTATCAT+GGG - chr4_1:50868575-50868594 Msa0553570:CDS 35.0%
TGGAGACAAGATGAGAATAA+AGG - chr4_1:50868694-50868713 Msa0553570:CDS 35.0%
AATCGCATTCAAAATCGCAT+TGG - chr4_1:50868817-50868836 Msa0553570:CDS 35.0%
CCTACTAAAAACAAATCACG+TGG + chr4_1:50868860-50868879 None:intergenic 35.0%
!!! CCACGTGATTTGTTTTTAGT+AGG - chr4_1:50868857-50868876 Msa0553570:CDS 35.0%
AGTAGGGAAAAACAAGATGA+TGG - chr4_1:50868874-50868893 Msa0553570:CDS 35.0%
TCACACGAGTAATAGAGTGA+TGG + chr4_1:50864916-50864935 None:intergenic 40.0%
TCAAGATGTTAATGGCTCGT+TGG + chr4_1:50864994-50865013 None:intergenic 40.0%
! AGGGTGTTATGAAGAAGAAC+AGG + chr4_1:50865080-50865099 None:intergenic 40.0%
!! GGAAAGGAAAAGGGTATTGT+TGG + chr4_1:50865174-50865193 None:intergenic 40.0%
GATGTATGGAGAGAAATCCA+AGG - chr4_1:50865335-50865354 Msa0553570:CDS 40.0%
AAATCCAAGGCGATAACAAC+TGG - chr4_1:50865348-50865367 Msa0553570:CDS 40.0%
AATCCAAGGCGATAACAACT+GGG - chr4_1:50865349-50865368 Msa0553570:CDS 40.0%
GGAAGGTCTATTAGATCCAA+TGG - chr4_1:50865370-50865389 Msa0553570:CDS 40.0%
AGCGAATGATTTCTTTGCGT+AGG + chr4_1:50865403-50865422 None:intergenic 40.0%
CGCAAAGAAATCATTCGCTA+TGG - chr4_1:50865404-50865423 Msa0553570:CDS 40.0%
TTGATGTTGCATAGAGGTAG+CGG + chr4_1:50865556-50865575 None:intergenic 40.0%
ATCCCATCCAGTTAGCATAA+GGG + chr4_1:50865631-50865650 None:intergenic 40.0%
TATCCCATCCAGTTAGCATA+AGG + chr4_1:50865632-50865651 None:intergenic 40.0%
TAGGGTACATACCTATGTCA+CGG + chr4_1:50865700-50865719 None:intergenic 40.0%
GTTTCTTCTCTCTCTCTCTT+TGG - chr4_1:50865824-50865843 Msa0553570:CDS 40.0%
ACTCTTACTCCGTTGTAAAG+TGG + chr4_1:50867105-50867124 None:intergenic 40.0%
GCACCGTGACATATATAGAA+TGG - chr4_1:50867951-50867970 Msa0553570:intron 40.0%
AACAACTAACGTCCCCATAA+CGG - chr4_1:50868264-50868283 Msa0553570:intron 40.0%
AAGTGCAAATTCCCAACTCT+CGG + chr4_1:50868307-50868326 None:intergenic 40.0%
! CATTTGATGGATGGGTATCA+TGG - chr4_1:50868574-50868593 Msa0553570:CDS 40.0%
! GATCTTCTAAGGAGTGAGTT+TGG - chr4_1:50868658-50868677 Msa0553570:CDS 40.0%
TTCTCATCTTGTCTCCAATG+TGG + chr4_1:50868691-50868710 None:intergenic 40.0%
AGATGATGTGCAATATCTGG+TGG + chr4_1:50868781-50868800 None:intergenic 40.0%
GCAAGATGATGTGCAATATC+TGG + chr4_1:50868784-50868803 None:intergenic 40.0%
! GAGGCTAGAATGTTGGTTGA+GGG + chr4_1:50865099-50865118 None:intergenic 45.0%
GATATGGGAGGCTAGAATGT+TGG + chr4_1:50865106-50865125 None:intergenic 45.0%
GGTGGGAATGGGAATGATAT+GGG + chr4_1:50865121-50865140 None:intergenic 45.0%
TGGTGGGAATGGGAATGATA+TGG + chr4_1:50865122-50865141 None:intergenic 45.0%
! TTCGTGCAGTTGGTTCATAG+TGG + chr4_1:50865249-50865268 None:intergenic 45.0%
TATGAACCAACTGCACGAAG+AGG - chr4_1:50865250-50865269 Msa0553570:CDS 45.0%
TTGCGTAGGATAGGATCCAT+TGG + chr4_1:50865389-50865408 None:intergenic 45.0%
AGCCCTTATGCTAACTGGAT+GGG - chr4_1:50865626-50865645 Msa0553570:CDS 45.0%
! AAAACGATACGGCGCTGAAA+AGG - chr4_1:50866847-50866866 Msa0553570:intron 45.0%
AAAAAGTAAAGGTCCGCCCT+TGG - chr4_1:50867809-50867828 Msa0553570:intron 45.0%
GAAATCAGCATCACAGTCAC+AGG - chr4_1:50868157-50868176 Msa0553570:intron 45.0%
!! TATGTCGTAAGCGCTGAGTA+TGG + chr4_1:50868206-50868225 None:intergenic 45.0%
GCTTACGACATAGCCGAATT+AGG - chr4_1:50868214-50868233 Msa0553570:intron 45.0%
GGAGTGAACATCATCGAAGA+CGG - chr4_1:50868235-50868254 Msa0553570:intron 45.0%
CGAACGAGTAAACCGTTATG+GGG + chr4_1:50868279-50868298 None:intergenic 45.0%
GCGAACGAGTAAACCGTTAT+GGG + chr4_1:50868280-50868299 None:intergenic 45.0%
CATAACGGTTTACTCGTTCG+CGG - chr4_1:50868279-50868298 Msa0553570:CDS 45.0%
ATAACGGTTTACTCGTTCGC+GGG - chr4_1:50868280-50868299 Msa0553570:CDS 45.0%
ATTGGTTATAATCCCCGGCA+CGG + chr4_1:50868398-50868417 None:intergenic 45.0%
CCAACATGAGCATAACTCCA+AGG + chr4_1:50868466-50868485 None:intergenic 45.0%
CCTTGGAGTTATGCTCATGT+TGG - chr4_1:50868463-50868482 Msa0553570:CDS 45.0%
!! AGTTTGGTGTTCCACCACAT+TGG - chr4_1:50868674-50868693 Msa0553570:CDS 45.0%
TCATCTTGTCTCCAATGTGG+TGG + chr4_1:50868688-50868707 None:intergenic 45.0%
GGAATGGTTCAAACCGATGA+TGG - chr4_1:50868715-50868734 Msa0553570:CDS 45.0%
!! TGGTTCAAACCGATGATGGA+AGG - chr4_1:50868719-50868738 Msa0553570:CDS 45.0%
!! TTCAAACCGATGATGGAAGG+TGG - chr4_1:50868722-50868741 Msa0553570:CDS 45.0%
!! TCAAACCGATGATGGAAGGT+GGG - chr4_1:50868723-50868742 Msa0553570:CDS 45.0%
! GCATTGGTAGCTTCCAATCA+AGG - chr4_1:50868833-50868852 Msa0553570:CDS 45.0%
CAAATCACGTGGTCCTTGAT+TGG + chr4_1:50868849-50868868 None:intergenic 45.0%
!!! TATATAATTGAAATTTTTTT+TGG - chr4_1:50867554-50867573 Msa0553570:intron 5.0%
! GGAGGCTAGAATGTTGGTTG+AGG + chr4_1:50865100-50865119 None:intergenic 50.0%
GGGAATGGGAATGATATGGG+AGG + chr4_1:50865118-50865137 None:intergenic 50.0%
CATCTTCCTCTTCGTGCAGT+TGG + chr4_1:50865259-50865278 None:intergenic 50.0%
GGCTTTCGTTGAGCGATGTA+TGG - chr4_1:50865321-50865340 Msa0553570:CDS 50.0%
CTTCCCAGTTGTTATCGCCT+TGG + chr4_1:50865355-50865374 None:intergenic 50.0%
CAAGGCGATAACAACTGGGA+AGG - chr4_1:50865353-50865372 Msa0553570:CDS 50.0%
! TGCATAGAGGTAGCGGCTTA+TGG + chr4_1:50865549-50865568 None:intergenic 50.0%
TGTGGAGCCCTTATGCTAAC+TGG - chr4_1:50865621-50865640 Msa0553570:CDS 50.0%
GAGCCCTTATGCTAACTGGA+TGG - chr4_1:50865625-50865644 Msa0553570:CDS 50.0%
! GATACGGCGCTGAAAAGGAA+CGG - chr4_1:50866852-50866871 Msa0553570:intron 50.0%
ACAGTCACAGGACACAGTCT+TGG - chr4_1:50868169-50868188 Msa0553570:intron 50.0%
!! GTAAGCGCTGAGTATGGCTA+GGG + chr4_1:50868200-50868219 None:intergenic 50.0%
CGCGAACGAGTAAACCGTTA+TGG + chr4_1:50868281-50868300 None:intergenic 50.0%
TAACGGTTTACTCGTTCGCG+GGG - chr4_1:50868281-50868300 Msa0553570:CDS 50.0%
CACAACCCACCTTCCATCAT+CGG + chr4_1:50868731-50868750 None:intergenic 50.0%
AGTGGATCCAGTTCCTCGCA+TGG - chr4_1:50865043-50865062 Msa0553570:three_prime_UTR 55.0%
ACAGAAGCCATGCGAGGAAC+TGG + chr4_1:50865053-50865072 None:intergenic 55.0%
GGTACAACAGAAGCCATGCG+AGG + chr4_1:50865059-50865078 None:intergenic 55.0%
! CGTTTAGGACGCCGTGACAT+AGG - chr4_1:50865686-50865705 Msa0553570:CDS 55.0%
!! CGTAAGCGCTGAGTATGGCT+AGG + chr4_1:50868201-50868220 None:intergenic 55.0%
TGACAAGGTTCCAACCGTGC+CGG - chr4_1:50868381-50868400 Msa0553570:CDS 55.0%
GTTATAATCCCCGGCACGGT+TGG + chr4_1:50868394-50868413 None:intergenic 55.0%
!! GAAGGTGGGTTGTGCCTGAA+CGG - chr4_1:50868737-50868756 Msa0553570:CDS 55.0%
GGTGGATGAGCTTCCACTAG+AGG + chr4_1:50868763-50868782 None:intergenic 55.0%
GACAAGGTTCCAACCGTGCC+GGG - chr4_1:50868382-50868401 Msa0553570:CDS 60.0%
ACAAGGTTCCAACCGTGCCG+GGG - chr4_1:50868383-50868402 Msa0553570:CDS 60.0%
TGTGCCTGAACGGCCTCTAG+TGG - chr4_1:50868747-50868766 Msa0553570:CDS 60.0%
GCTTCCACTAGAGGCCGTTC+AGG + chr4_1:50868754-50868773 None:intergenic 60.0%
TCGTTCGCGGGGCCGAGAGT+TGG - chr4_1:50868292-50868311 Msa0553570:CDS 70.0%
CGTTCGCGGGGCCGAGAGTT+GGG - chr4_1:50868293-50868312 Msa0553570:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 50864898 50869085 50864898 ID=Msa0553570;Name=Msa0553570
chr4_1 mRNA 50864898 50869085 50864898 ID=Msa0553570-mRNA-1;Parent=Msa0553570;Name=Msa0553570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=164|1|1|1|1|1|2|221|524
chr4_1 exon 50864898 50866047 50864898 ID=Msa0553570-mRNA-1:exon:14394;Parent=Msa0553570-mRNA-1
chr4_1 exon 50868276 50869085 50868276 ID=Msa0553570-mRNA-1:exon:14393;Parent=Msa0553570-mRNA-1
chr4_1 five_prime_UTR 50868922 50869085 50868922 ID=Msa0553570-mRNA-1:five_prime_utr;Parent=Msa0553570-mRNA-1
chr4_1 CDS 50868276 50868921 50868276 ID=Msa0553570-mRNA-1:cds;Parent=Msa0553570-mRNA-1
chr4_1 CDS 50865119 50866047 50865119 ID=Msa0553570-mRNA-1:cds;Parent=Msa0553570-mRNA-1
chr4_1 three_prime_UTR 50864898 50865118 50864898 ID=Msa0553570-mRNA-1:three_prime_utr;Parent=Msa0553570-mRNA-1
Gene Sequence

>Msa0553570

ATGGCTTCTGTTGTACCTGTTCTTCTTCATAACACCCTCAACCAACATTCTAGCCTCCCATATCATTCCCATTCCCACCATCTATATTCAAAATCAATCAACCACAAATCCAACAATACCCTTTTCCTTTCCAAAAAACCTAATAATTCGCCTATATTATTTCTCAAATGCTCTTCTTCTTCGTCCACTATGAACCAACTGCACGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAATCATCACGGCTTTCGTTGAGCGATGTATGGAGAGAAATCCAAGGCGATAACAACTGGGAAGGTCTATTAGATCCAATGGATCCTATCCTACGCAAAGAAATCATTCGCTATGGTGAGCTAGCTCAAGCATGTTACGATTCATTCGACTTTGATCAAAACTCAAAATATTGTGGAACATGCAAGTATCATCCTGCACATTTCTTTAAGAAACTTTACATGGGAGATGGATACACCATAAGCCGCTACCTCTATGCAACATCAAACATCAACCTTCCTAAATTCTTCAAGAAATCTAAGATCTCTTCAGTGTGGAGCCCTTATGCTAACTGGATGGGATACATAGCTGTTTCCACCAACGAAGAAGAGATTAAACGTTTAGGACGCCGTGACATAGTGATTGCATGGAGGGGCACCGTGACATATATAGAATGGATATACGACCTAAAAGACATTCTACACGAAGCAAACTTCAAAAACGACCCATCAATCAAAGTAGAAACAGGATTCTACGACTTATACACCAAGAAAGAACAATCATGCACTTATTGTTCATTCTCAGCTCGAGAACAAGTCCTCTCAGAAATAAAACGACTTCTTCAATTCTACCAAGATGAAGAAATCAGCATCACAGTCACAGGACACAGTCTTGGTGCTGCCCTAGCCATACTCAGCGCTTACGACATAGCCGAATTAGGAGTGAACATCATCGAAGACGGTGACAAAACAACTAACGTCCCCATAACGGTTTACTCGTTCGCGGGGCCGAGAGTTGGGAATTTGCACTTTAAAGAAAGGTGTGAAGAACTTGGTGTTAAAGTTTTGAGAATACATAATATTCATGACAAGGTTCCAACCGTGCCGGGGATTATAACCAATGAGAAATTTCAGTTTCAAAAGTATATAGAAGATACATTGGCTTTTCCTTGGAGTTATGCTCATGTTGGAACTGAAATTAAATTGGATCATAGAAATAGTCCTTTTTTGAAGGAGAATGGTGATTTGGGATGTACACATAATTTAGAGGTACTTTTGCATTTGATGGATGGGTATCATGGGAAAGATAAAAAATTTAATATGGTTTCAAAAAGGGATATTGCACTTGTGAATAAGAGTTGTGATCTTCTAAGGAGTGAGTTTGGTGTTCCACCACATTGGAGACAAGATGAGAATAAAGGAATGGTTCAAACCGATGATGGAAGGTGGGTTGTGCCTGAACGGCCTCTAGTGGAAGCTCATCCACCAGATATTGCACATCATCTTGCATTAGTGCTTAAAAATCGCATTCAAAATCGCATTGGTAGCTTCCAATCAAGGACCACGTGA

Protein sequence

>Msa0553570

MASVVPVLLHNTLNQHSSLPYHSHSHHLYSKSINHKSNNTLFLSKKPNNSPILFLKCSSSSSTMNQLHEEEDEEEEEEEKEEEESSRLSLSDVWREIQGDNNWEGLLDPMDPILRKEIIRYGELAQACYDSFDFDQNSKYCGTCKYHPAHFFKKLYMGDGYTISRYLYATSNINLPKFFKKSKISSVWSPYANWMGYIAVSTNEEEIKRLGRRDIVIAWRGTVTYIEWIYDLKDILHEANFKNDPSIKVETGFYDLYTKKEQSCTYCSFSAREQVLSEIKRLLQFYQDEEISITVTGHSLGAALAILSAYDIAELGVNIIEDGDKTTNVPITVYSFAGPRVGNLHFKERCEELGVKVLRIHNIHDKVPTVPGIITNEKFQFQKYIEDTLAFPWSYAHVGTEIKLDHRNSPFLKENGDLGCTHNLEVLLHLMDGYHGKDKKFNMVSKRDIALVNKSCDLLRSEFGVPPHWRQDENKGMVQTDDGRWVVPERPLVEAHPPDIAHHLALVLKNRIQNRIGSFQSRTT*