AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0911490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0911490 MtrunA17_Chr6g0464451 94.465 271 14 1 1 271 42 311 1.40e-178 494
Msa0911490 MtrunA17_Chr6g0464411 73.063 271 70 1 1 271 1 268 2.46e-148 416
Msa0911490 MtrunA17_Chr6g0464441 77.397 146 33 0 126 271 1 146 7.51e-81 240
Msa0911490 MtrunA17_Chr6g0464421 61.538 117 42 1 1 117 1 114 5.89e-46 151
Msa0911490 MtrunA17_Chr7g0241571 42.991 107 59 2 166 271 160 265 1.27e-19 85.9
Msa0911490 MtrunA17_Chr4g0031681 42.045 88 49 2 184 270 174 260 3.48e-14 72.0
Msa0911490 MtrunA17_Chr5g0440411 28.655 171 113 4 108 270 141 310 1.14e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0911490 AT5G16010.1 59.245 265 105 2 8 271 6 268 8.17e-116 333
Msa0911490 AT2G38050.1 32.710 107 71 1 166 271 156 262 2.03e-14 71.6
Msa0911490 AT3G55360.1 31.579 171 108 5 108 270 141 310 1.83e-13 69.7

Find 51 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTAACGTTCCAGAATT+TGG 0.142680 6_2:-18072646 None:intergenic
TACAAGAAACAATGCGATTC+CGG 0.248460 6_2:-18074426 None:intergenic
ATAATAGCCTTGACATTCTT+AGG 0.257430 6_2:-18074710 None:intergenic
ATTTAAACTATTCCAAATTC+TGG 0.284989 6_2:+18072634 Msa0911490:CDS
GTATAAGAGGTTAATACATT+TGG 0.337688 6_2:+18074863 Msa0911490:three_prime_UTR
TTTAGATCTTTGGTTCTTCA+AGG 0.346488 6_2:+18072795 Msa0911490:CDS
CCACAAATATAGTGGTTCTA+TGG 0.348368 6_2:+18074289 Msa0911490:CDS
AGAAAATAACTTAGAGTTAT+GGG 0.350393 6_2:-18074329 None:intergenic
TATCTTCTATCCAAATTAAG+AGG 0.370538 6_2:+18074476 Msa0911490:CDS
AAATCAAACAAGCCACCTTT+AGG 0.388800 6_2:-18074524 None:intergenic
GTGATTATGTTGTGTATAAG+AGG 0.392946 6_2:+18074850 Msa0911490:three_prime_UTR
GAGAAAATAACTTAGAGTTA+TGG 0.393676 6_2:-18074330 None:intergenic
CTATTTGTCCACAAATATAG+TGG 0.398112 6_2:+18074281 Msa0911490:CDS
ACAAGAAACAATGCGATTCC+GGG 0.404552 6_2:-18074425 None:intergenic
AATAGATCGATTGGTGGTTC+TGG 0.413052 6_2:-18074398 None:intergenic
TTGTGTTATTCAAATATAAG+AGG 0.423484 6_2:+18074786 Msa0911490:three_prime_UTR
TGTTCTAAATATTGCAAGCT+AGG 0.425611 6_2:+18074741 Msa0911490:exon
GGAATCGCATTGTTTCTTGT+AGG 0.434455 6_2:+18074428 Msa0911490:CDS
TATTCGTTCTCTTTCGCCAT+AGG 0.453501 6_2:+18074617 Msa0911490:CDS
CTATCCAAATTAAGAGGAAA+AGG 0.465185 6_2:+18074482 Msa0911490:CDS
GCAGGTATCAATGAAGTTAG+AGG 0.469039 6_2:+18072606 Msa0911490:CDS
CCATAGAACCACTATATTTG+TGG 0.471338 6_2:-18074289 None:intergenic
GGTTCTTCAAGGTGCTGTTA+CGG 0.475927 6_2:+18072806 Msa0911490:CDS
TTGTTTCTTGTAGGCGTCAC+CGG 0.481108 6_2:+18074437 Msa0911490:CDS
AAAGATCTAAAACCATCATC+AGG 0.489846 6_2:-18072783 None:intergenic
GGTGATGAATAGTGATGGTG+GGG 0.492390 6_2:-18072547 None:intergenic
GCTTGTGGACTTATTTCAGT+TGG 0.495448 6_2:+18074811 Msa0911490:three_prime_UTR
TTGCATAACTCCTACCCAAA+AGG 0.506130 6_2:-18074652 None:intergenic
ATACAATGTCTGAGAAATGA+AGG 0.509558 6_2:-18074597 None:intergenic
GGGGTGGGAATAGGAAGCTT+AGG 0.516472 6_2:-18072527 None:intergenic
AAAGAATACAAGATTCCTAA+AGG 0.529482 6_2:+18074509 Msa0911490:CDS
CCGGGATACAATAGATCGAT+TGG 0.532651 6_2:-18074407 None:intergenic
GCAGCACAAGCAACAAAAGC+AGG 0.536471 6_2:-18072744 None:intergenic
ATAATGATGGTAGAAGTTGC+CGG 0.544164 6_2:-18074456 None:intergenic
ATTTGGATAGAAGATAATGA+TGG 0.547206 6_2:-18074469 None:intergenic
TGGTGATGAATAGTGATGGT+GGG 0.547912 6_2:-18072548 None:intergenic
ATGACATTGTCGAGTAAAAG+TGG 0.551017 6_2:+18072702 Msa0911490:CDS
GGAGTTATGCAACTAGAGAA+TGG 0.568134 6_2:+18074663 Msa0911490:CDS
GTGGTGATGAATAGTGATGG+TGG 0.569321 6_2:-18072549 None:intergenic
CAAATATAAGAGGTAGCTTG+TGG 0.582618 6_2:+18074796 Msa0911490:three_prime_UTR
GTGATGAATAGTGATGGTGG+GGG 0.585799 6_2:-18072546 None:intergenic
CCAATCGATCTATTGTATCC+CGG 0.590454 6_2:+18074407 Msa0911490:CDS
GAATACAAGATTCCTAAAGG+TGG 0.614245 6_2:+18074512 Msa0911490:CDS
TAGGAACGTGGAGAATGTCA+TGG 0.616797 6_2:-18072508 None:intergenic
GGATACAATAGATCGATTGG+TGG 0.622127 6_2:-18074404 None:intergenic
GAATAGGAAGCTTAGGAACG+TGG 0.629915 6_2:-18072520 None:intergenic
GTTCTGGAAGATTCGACGTG+AGG 0.646091 6_2:-18074382 None:intergenic
TGTGTCTCACTTGCAAACGC+AGG 0.665442 6_2:+18072588 Msa0911490:CDS
ATGGTGGTGATGAATAGTGA+TGG 0.705394 6_2:-18072552 None:intergenic
ACATGTTATGACAGACATGG+TGG 0.765146 6_2:-18072568 None:intergenic
GACACATGTTATGACAGACA+TGG 0.820382 6_2:-18072571 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGATTTTAATTGTTGT+GGG + chr6_2:18072936-18072955 Msa0911490:intron 15.0%
!! TTAAAATTCTGAATAAGATA+AGG - chr6_2:18073940-18073959 None:intergenic 15.0%
!!! TTTATGATTTTAATTGTTGT+GGG + chr6_2:18072936-18072955 Msa0911490:intron 15.0%
!! TTAAAATTCTGAATAAGATA+AGG - chr6_2:18073940-18073959 None:intergenic 15.0%
!! ATTTAAACTATTCCAAATTC+TGG + chr6_2:18072634-18072653 Msa0911490:CDS 20.0%
!!! GTTTATGATTTTAATTGTTG+TGG + chr6_2:18072935-18072954 Msa0911490:intron 20.0%
!!! TTATGTAAGCTTTAAAGTTT+AGG + chr6_2:18073168-18073187 Msa0911490:intron 20.0%
!! TAGTTATGCATTCTATTTAA+GGG - chr6_2:18073212-18073231 None:intergenic 20.0%
!! ATAGTTATGCATTCTATTTA+AGG - chr6_2:18073213-18073232 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG + chr6_2:18073315-18073334 Msa0911490:intron 20.0%
!! TAAATCTTTCTCATCAAATT+AGG + chr6_2:18073386-18073405 Msa0911490:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG + chr6_2:18073387-18073406 Msa0911490:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG + chr6_2:18073764-18073783 Msa0911490:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG + chr6_2:18073838-18073857 Msa0911490:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG - chr6_2:18073971-18073990 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG - chr6_2:18074332-18074351 None:intergenic 20.0%
!!! TGCAATATTTAGAACAAAAA+TGG - chr6_2:18074737-18074756 None:intergenic 20.0%
!!! TTGTGTTATTCAAATATAAG+AGG + chr6_2:18074786-18074805 Msa0911490:three_prime_UTR 20.0%
!! ATTTAAACTATTCCAAATTC+TGG + chr6_2:18072634-18072653 Msa0911490:CDS 20.0%
!!! GTTTATGATTTTAATTGTTG+TGG + chr6_2:18072935-18072954 Msa0911490:intron 20.0%
!!! TTATGTAAGCTTTAAAGTTT+AGG + chr6_2:18073168-18073187 Msa0911490:intron 20.0%
!! TAGTTATGCATTCTATTTAA+GGG - chr6_2:18073212-18073231 None:intergenic 20.0%
!! ATAGTTATGCATTCTATTTA+AGG - chr6_2:18073213-18073232 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG + chr6_2:18073315-18073334 Msa0911490:intron 20.0%
!! TAAATCTTTCTCATCAAATT+AGG + chr6_2:18073386-18073405 Msa0911490:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG + chr6_2:18073387-18073406 Msa0911490:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG + chr6_2:18073764-18073783 Msa0911490:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG + chr6_2:18073838-18073857 Msa0911490:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG - chr6_2:18073971-18073990 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG - chr6_2:18074332-18074351 None:intergenic 20.0%
!!! TGCAATATTTAGAACAAAAA+TGG - chr6_2:18074737-18074756 None:intergenic 20.0%
!!! TTGTGTTATTCAAATATAAG+AGG + chr6_2:18074786-18074805 Msa0911490:three_prime_UTR 20.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG + chr6_2:18072833-18072852 Msa0911490:CDS 25.0%
! TTAAAGCTTACATAAGTATG+TGG - chr6_2:18073163-18073182 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+TGG + chr6_2:18073516-18073535 Msa0911490:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG - chr6_2:18073548-18073567 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG + chr6_2:18073546-18073565 Msa0911490:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG - chr6_2:18073698-18073717 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG - chr6_2:18074333-18074352 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG - chr6_2:18074472-18074491 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG + chr6_2:18074476-18074495 Msa0911490:CDS 25.0%
! AAAGAATACAAGATTCCTAA+AGG + chr6_2:18074509-18074528 Msa0911490:CDS 25.0%
! ATGATCTCAAAAAGATAATG+TGG - chr6_2:18074560-18074579 None:intergenic 25.0%
!!! CATTATCTTTTTGAGATCAT+CGG + chr6_2:18074560-18074579 Msa0911490:CDS 25.0%
!!! ATTATCTTTTTGAGATCATC+GGG + chr6_2:18074561-18074580 Msa0911490:CDS 25.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG + chr6_2:18072833-18072852 Msa0911490:CDS 25.0%
! TTAAAGCTTACATAAGTATG+TGG - chr6_2:18073163-18073182 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+TGG + chr6_2:18073516-18073535 Msa0911490:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG - chr6_2:18073548-18073567 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG + chr6_2:18073546-18073565 Msa0911490:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG - chr6_2:18073698-18073717 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG - chr6_2:18074333-18074352 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG - chr6_2:18074472-18074491 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG + chr6_2:18074476-18074495 Msa0911490:CDS 25.0%
! AAAGAATACAAGATTCCTAA+AGG + chr6_2:18074509-18074528 Msa0911490:CDS 25.0%
! ATGATCTCAAAAAGATAATG+TGG - chr6_2:18074560-18074579 None:intergenic 25.0%
!!! CATTATCTTTTTGAGATCAT+CGG + chr6_2:18074560-18074579 Msa0911490:CDS 25.0%
!!! ATTATCTTTTTGAGATCATC+GGG + chr6_2:18074561-18074580 Msa0911490:CDS 25.0%
!!! CATGGTTTTTTTGTTTTGTG+TGG - chr6_2:18072493-18072512 None:intergenic 30.0%
GTTATTAACGTTCCAGAATT+TGG - chr6_2:18072649-18072668 None:intergenic 30.0%
! AAAGATCTAAAACCATCATC+AGG - chr6_2:18072786-18072805 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG + chr6_2:18072785-18072804 Msa0911490:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG + chr6_2:18072795-18072814 Msa0911490:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG + chr6_2:18072850-18072869 Msa0911490:intron 30.0%
ATCTCACATCATTAAACCAT+AGG - chr6_2:18072869-18072888 None:intergenic 30.0%
!!! CTGGTTTGGTTTTAAATTTG+TGG + chr6_2:18073077-18073096 Msa0911490:intron 30.0%
CGATGTCCACTTATTAAAAT+GGG - chr6_2:18073104-18073123 None:intergenic 30.0%
!! TAAGCTTTAAAGTTTAGGAG+AGG + chr6_2:18073173-18073192 Msa0911490:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG + chr6_2:18073227-18073246 Msa0911490:intron 30.0%
AAATTCTTACATGGTATCAG+AGG - chr6_2:18073283-18073302 None:intergenic 30.0%
! CTGATACCATGTAAGAATTT+TGG + chr6_2:18073283-18073302 Msa0911490:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG + chr6_2:18073288-18073307 Msa0911490:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG + chr6_2:18073289-18073308 Msa0911490:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG - chr6_2:18073369-18073388 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG - chr6_2:18073558-18073577 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG - chr6_2:18073612-18073631 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG + chr6_2:18073663-18073682 Msa0911490:intron 30.0%
TTTGTTCCTAAGTATTTCGT+GGG + chr6_2:18074032-18074051 Msa0911490:intron 30.0%
CACTCAATATACACAAAATC+TGG - chr6_2:18074184-18074203 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG + chr6_2:18074281-18074300 Msa0911490:CDS 30.0%
CTATCCAAATTAAGAGGAAA+AGG + chr6_2:18074482-18074501 Msa0911490:CDS 30.0%
ATACAATGTCTGAGAAATGA+AGG - chr6_2:18074600-18074619 None:intergenic 30.0%
! TGATTTTCCTAAGAATGTCA+AGG + chr6_2:18074703-18074722 Msa0911490:CDS 30.0%
! ATAATAGCCTTGACATTCTT+AGG - chr6_2:18074713-18074732 None:intergenic 30.0%
! TGTTCTAAATATTGCAAGCT+AGG + chr6_2:18074741-18074760 Msa0911490:exon 30.0%
GTGATTATGTTGTGTATAAG+AGG + chr6_2:18074850-18074869 Msa0911490:three_prime_UTR 30.0%
!!! CATGGTTTTTTTGTTTTGTG+TGG - chr6_2:18072493-18072512 None:intergenic 30.0%
GTTATTAACGTTCCAGAATT+TGG - chr6_2:18072649-18072668 None:intergenic 30.0%
! AAAGATCTAAAACCATCATC+AGG - chr6_2:18072786-18072805 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG + chr6_2:18072785-18072804 Msa0911490:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG + chr6_2:18072795-18072814 Msa0911490:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG + chr6_2:18072850-18072869 Msa0911490:intron 30.0%
ATCTCACATCATTAAACCAT+AGG - chr6_2:18072869-18072888 None:intergenic 30.0%
!!! CTGGTTTGGTTTTAAATTTG+TGG + chr6_2:18073077-18073096 Msa0911490:intron 30.0%
CGATGTCCACTTATTAAAAT+GGG - chr6_2:18073104-18073123 None:intergenic 30.0%
!! TAAGCTTTAAAGTTTAGGAG+AGG + chr6_2:18073173-18073192 Msa0911490:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG + chr6_2:18073227-18073246 Msa0911490:intron 30.0%
AAATTCTTACATGGTATCAG+AGG - chr6_2:18073283-18073302 None:intergenic 30.0%
! CTGATACCATGTAAGAATTT+TGG + chr6_2:18073283-18073302 Msa0911490:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG + chr6_2:18073288-18073307 Msa0911490:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG + chr6_2:18073289-18073308 Msa0911490:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG - chr6_2:18073369-18073388 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG - chr6_2:18073558-18073577 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG - chr6_2:18073612-18073631 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG + chr6_2:18073663-18073682 Msa0911490:intron 30.0%
TTTGTTCCTAAGTATTTCGT+GGG + chr6_2:18074032-18074051 Msa0911490:intron 30.0%
CACTCAATATACACAAAATC+TGG - chr6_2:18074184-18074203 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG + chr6_2:18074281-18074300 Msa0911490:CDS 30.0%
CTATCCAAATTAAGAGGAAA+AGG + chr6_2:18074482-18074501 Msa0911490:CDS 30.0%
ATACAATGTCTGAGAAATGA+AGG - chr6_2:18074600-18074619 None:intergenic 30.0%
! TGATTTTCCTAAGAATGTCA+AGG + chr6_2:18074703-18074722 Msa0911490:CDS 30.0%
! ATAATAGCCTTGACATTCTT+AGG - chr6_2:18074713-18074732 None:intergenic 30.0%
! TGTTCTAAATATTGCAAGCT+AGG + chr6_2:18074741-18074760 Msa0911490:exon 30.0%
GTGATTATGTTGTGTATAAG+AGG + chr6_2:18074850-18074869 Msa0911490:three_prime_UTR 30.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG - chr6_2:18072475-18072494 None:intergenic 35.0%
ATGACATTGTCGAGTAAAAG+TGG + chr6_2:18072702-18072721 Msa0911490:CDS 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG + chr6_2:18072771-18072790 Msa0911490:CDS 35.0%
AACCTTTGATGTAGAACTTG+TGG + chr6_2:18073011-18073030 Msa0911490:intron 35.0%
! AAGAGTGTATAGCGAAATTC+TGG + chr6_2:18073058-18073077 Msa0911490:intron 35.0%
! TGTATAGCGAAATTCTGGTT+TGG + chr6_2:18073063-18073082 Msa0911490:intron 35.0%
!! TGTGGACCCATTTTAATAAG+TGG + chr6_2:18073095-18073114 Msa0911490:intron 35.0%
GCGATGTCCACTTATTAAAA+TGG - chr6_2:18073105-18073124 None:intergenic 35.0%
TTATACACAACCGAAATCGT+GGG - chr6_2:18073136-18073155 None:intergenic 35.0%
ATTATACACAACCGAAATCG+TGG - chr6_2:18073137-18073156 None:intergenic 35.0%
CCCAAACCAAAATTCTTACA+TGG - chr6_2:18073292-18073311 None:intergenic 35.0%
!!! CCTTACATACCGATTTTGTA+AGG - chr6_2:18073327-18073346 None:intergenic 35.0%
CCTTACAAAATCGGTATGTA+AGG + chr6_2:18073324-18073343 Msa0911490:intron 35.0%
CAAAATCGGTATGTAAGGTT+AGG + chr6_2:18073329-18073348 Msa0911490:intron 35.0%
AGTCTCACGTTGGATAAAAA+TGG - chr6_2:18073359-18073378 None:intergenic 35.0%
TAACACATAGTCTAGTACCA+AGG + chr6_2:18073415-18073434 Msa0911490:intron 35.0%
TGCTATTAAGTTTCCGCTAT+CGG - chr6_2:18073470-18073489 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG + chr6_2:18073560-18073579 Msa0911490:intron 35.0%
AGCCATATCTCTTCTAATGT+AGG + chr6_2:18073607-18073626 Msa0911490:intron 35.0%
TAATCCACCGCATTAATTGT+AGG - chr6_2:18073673-18073692 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG + chr6_2:18073720-18073739 Msa0911490:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG - chr6_2:18073728-18073747 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG - chr6_2:18073733-18073752 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG + chr6_2:18073808-18073827 Msa0911490:intron 35.0%
GTTTGTTCCTAAGTATTTCG+TGG + chr6_2:18074031-18074050 Msa0911490:intron 35.0%
CATAATCCCACGAAATACTT+AGG - chr6_2:18074041-18074060 None:intergenic 35.0%
! ATGTTTCTACTCTACTGTGT+AGG + chr6_2:18074256-18074275 Msa0911490:intron 35.0%
CCATAGAACCACTATATTTG+TGG - chr6_2:18074292-18074311 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG + chr6_2:18074289-18074308 Msa0911490:CDS 35.0%
TACAAGAAACAATGCGATTC+CGG - chr6_2:18074429-18074448 None:intergenic 35.0%
ATAATGATGGTAGAAGTTGC+CGG - chr6_2:18074459-18074478 None:intergenic 35.0%
! TTCGCCTTTTCCTCTTAATT+TGG - chr6_2:18074489-18074508 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG + chr6_2:18074512-18074531 Msa0911490:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG - chr6_2:18074527-18074546 None:intergenic 35.0%
!! TTTGAGATCATCGGGTTTTA+TGG + chr6_2:18074569-18074588 Msa0911490:CDS 35.0%
AAGGTAAAAAGTAGTGCCTA+TGG - chr6_2:18074636-18074655 None:intergenic 35.0%
!!! AGGCACTACTTTTTACCTTT+TGG + chr6_2:18074637-18074656 Msa0911490:CDS 35.0%
!!! GGCACTACTTTTTACCTTTT+GGG + chr6_2:18074638-18074657 Msa0911490:CDS 35.0%
!!! CTACTTTTTACCTTTTGGGT+AGG + chr6_2:18074642-18074661 Msa0911490:CDS 35.0%
CAAATATAAGAGGTAGCTTG+TGG + chr6_2:18074796-18074815 Msa0911490:three_prime_UTR 35.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG - chr6_2:18072475-18072494 None:intergenic 35.0%
ATGACATTGTCGAGTAAAAG+TGG + chr6_2:18072702-18072721 Msa0911490:CDS 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG + chr6_2:18072771-18072790 Msa0911490:CDS 35.0%
AACCTTTGATGTAGAACTTG+TGG + chr6_2:18073011-18073030 Msa0911490:intron 35.0%
! AAGAGTGTATAGCGAAATTC+TGG + chr6_2:18073058-18073077 Msa0911490:intron 35.0%
! TGTATAGCGAAATTCTGGTT+TGG + chr6_2:18073063-18073082 Msa0911490:intron 35.0%
!! TGTGGACCCATTTTAATAAG+TGG + chr6_2:18073095-18073114 Msa0911490:intron 35.0%
GCGATGTCCACTTATTAAAA+TGG - chr6_2:18073105-18073124 None:intergenic 35.0%
TTATACACAACCGAAATCGT+GGG - chr6_2:18073136-18073155 None:intergenic 35.0%
ATTATACACAACCGAAATCG+TGG - chr6_2:18073137-18073156 None:intergenic 35.0%
CCCAAACCAAAATTCTTACA+TGG - chr6_2:18073292-18073311 None:intergenic 35.0%
!!! CCTTACATACCGATTTTGTA+AGG - chr6_2:18073327-18073346 None:intergenic 35.0%
CCTTACAAAATCGGTATGTA+AGG + chr6_2:18073324-18073343 Msa0911490:intron 35.0%
CAAAATCGGTATGTAAGGTT+AGG + chr6_2:18073329-18073348 Msa0911490:intron 35.0%
AGTCTCACGTTGGATAAAAA+TGG - chr6_2:18073359-18073378 None:intergenic 35.0%
TAACACATAGTCTAGTACCA+AGG + chr6_2:18073415-18073434 Msa0911490:intron 35.0%
TGCTATTAAGTTTCCGCTAT+CGG - chr6_2:18073470-18073489 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG + chr6_2:18073560-18073579 Msa0911490:intron 35.0%
AGCCATATCTCTTCTAATGT+AGG + chr6_2:18073607-18073626 Msa0911490:intron 35.0%
TAATCCACCGCATTAATTGT+AGG - chr6_2:18073673-18073692 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG + chr6_2:18073720-18073739 Msa0911490:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG - chr6_2:18073728-18073747 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG - chr6_2:18073733-18073752 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG + chr6_2:18073808-18073827 Msa0911490:intron 35.0%
GTTTGTTCCTAAGTATTTCG+TGG + chr6_2:18074031-18074050 Msa0911490:intron 35.0%
CATAATCCCACGAAATACTT+AGG - chr6_2:18074041-18074060 None:intergenic 35.0%
! ATGTTTCTACTCTACTGTGT+AGG + chr6_2:18074256-18074275 Msa0911490:intron 35.0%
CCATAGAACCACTATATTTG+TGG - chr6_2:18074292-18074311 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG + chr6_2:18074289-18074308 Msa0911490:CDS 35.0%
TACAAGAAACAATGCGATTC+CGG - chr6_2:18074429-18074448 None:intergenic 35.0%
ATAATGATGGTAGAAGTTGC+CGG - chr6_2:18074459-18074478 None:intergenic 35.0%
! TTCGCCTTTTCCTCTTAATT+TGG - chr6_2:18074489-18074508 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG + chr6_2:18074512-18074531 Msa0911490:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG - chr6_2:18074527-18074546 None:intergenic 35.0%
!! TTTGAGATCATCGGGTTTTA+TGG + chr6_2:18074569-18074588 Msa0911490:CDS 35.0%
AAGGTAAAAAGTAGTGCCTA+TGG - chr6_2:18074636-18074655 None:intergenic 35.0%
!!! AGGCACTACTTTTTACCTTT+TGG + chr6_2:18074637-18074656 Msa0911490:CDS 35.0%
!!! GGCACTACTTTTTACCTTTT+GGG + chr6_2:18074638-18074657 Msa0911490:CDS 35.0%
!!! CTACTTTTTACCTTTTGGGT+AGG + chr6_2:18074642-18074661 Msa0911490:CDS 35.0%
CAAATATAAGAGGTAGCTTG+TGG + chr6_2:18074796-18074815 Msa0911490:three_prime_UTR 35.0%
! TGGTGATGAATAGTGATGGT+GGG - chr6_2:18072551-18072570 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG - chr6_2:18072555-18072574 None:intergenic 40.0%
ACATGTTATGACAGACATGG+TGG - chr6_2:18072571-18072590 None:intergenic 40.0%
GACACATGTTATGACAGACA+TGG - chr6_2:18072574-18072593 None:intergenic 40.0%
GCAGGTATCAATGAAGTTAG+AGG + chr6_2:18072606-18072625 Msa0911490:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG + chr6_2:18072956-18072975 Msa0911490:intron 40.0%
GTCCACAAGTTCTACATCAA+AGG - chr6_2:18073016-18073035 None:intergenic 40.0%
GCTATTAAGTTTCCGCTATC+GGG - chr6_2:18073469-18073488 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG + chr6_2:18073472-18073491 Msa0911490:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG + chr6_2:18073480-18073499 Msa0911490:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG - chr6_2:18073654-18073673 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG + chr6_2:18073666-18073685 Msa0911490:intron 40.0%
!! CGGTGGATTAGACCATAATT+TGG + chr6_2:18073683-18073702 Msa0911490:intron 40.0%
! AATAGATCGATTGGTGGTTC+TGG - chr6_2:18074401-18074420 None:intergenic 40.0%
GGATACAATAGATCGATTGG+TGG - chr6_2:18074407-18074426 None:intergenic 40.0%
CCAATCGATCTATTGTATCC+CGG + chr6_2:18074407-18074426 Msa0911490:CDS 40.0%
ACAAGAAACAATGCGATTCC+GGG - chr6_2:18074428-18074447 None:intergenic 40.0%
! GGAATCGCATTGTTTCTTGT+AGG + chr6_2:18074428-18074447 Msa0911490:CDS 40.0%
TATTCGTTCTCTTTCGCCAT+AGG + chr6_2:18074617-18074636 Msa0911490:CDS 40.0%
TTGCATAACTCCTACCCAAA+AGG - chr6_2:18074655-18074674 None:intergenic 40.0%
GGAGTTATGCAACTAGAGAA+TGG + chr6_2:18074663-18074682 Msa0911490:CDS 40.0%
GCTTGTGGACTTATTTCAGT+TGG + chr6_2:18074811-18074830 Msa0911490:three_prime_UTR 40.0%
! TGGTGATGAATAGTGATGGT+GGG - chr6_2:18072551-18072570 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG - chr6_2:18072555-18072574 None:intergenic 40.0%
ACATGTTATGACAGACATGG+TGG - chr6_2:18072571-18072590 None:intergenic 40.0%
GACACATGTTATGACAGACA+TGG - chr6_2:18072574-18072593 None:intergenic 40.0%
GCAGGTATCAATGAAGTTAG+AGG + chr6_2:18072606-18072625 Msa0911490:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG + chr6_2:18072956-18072975 Msa0911490:intron 40.0%
GTCCACAAGTTCTACATCAA+AGG - chr6_2:18073016-18073035 None:intergenic 40.0%
GCTATTAAGTTTCCGCTATC+GGG - chr6_2:18073469-18073488 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG + chr6_2:18073472-18073491 Msa0911490:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG + chr6_2:18073480-18073499 Msa0911490:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG - chr6_2:18073654-18073673 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG + chr6_2:18073666-18073685 Msa0911490:intron 40.0%
!! CGGTGGATTAGACCATAATT+TGG + chr6_2:18073683-18073702 Msa0911490:intron 40.0%
! AATAGATCGATTGGTGGTTC+TGG - chr6_2:18074401-18074420 None:intergenic 40.0%
GGATACAATAGATCGATTGG+TGG - chr6_2:18074407-18074426 None:intergenic 40.0%
CCAATCGATCTATTGTATCC+CGG + chr6_2:18074407-18074426 Msa0911490:CDS 40.0%
ACAAGAAACAATGCGATTCC+GGG - chr6_2:18074428-18074447 None:intergenic 40.0%
! GGAATCGCATTGTTTCTTGT+AGG + chr6_2:18074428-18074447 Msa0911490:CDS 40.0%
TATTCGTTCTCTTTCGCCAT+AGG + chr6_2:18074617-18074636 Msa0911490:CDS 40.0%
TTGCATAACTCCTACCCAAA+AGG - chr6_2:18074655-18074674 None:intergenic 40.0%
GGAGTTATGCAACTAGAGAA+TGG + chr6_2:18074663-18074682 Msa0911490:CDS 40.0%
GCTTGTGGACTTATTTCAGT+TGG + chr6_2:18074811-18074830 Msa0911490:three_prime_UTR 40.0%
TAGGAACGTGGAGAATGTCA+TGG - chr6_2:18072511-18072530 None:intergenic 45.0%
GAATAGGAAGCTTAGGAACG+TGG - chr6_2:18072523-18072542 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG - chr6_2:18072549-18072568 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG - chr6_2:18072550-18072569 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG - chr6_2:18072552-18072571 None:intergenic 45.0%
!! GGTTCTTCAAGGTGCTGTTA+CGG + chr6_2:18072806-18072825 Msa0911490:CDS 45.0%
TAATAAGTGGACATCGCTCG+TGG + chr6_2:18073108-18073127 Msa0911490:intron 45.0%
TGGTATCAGAGGCGAATTGT+TGG - chr6_2:18073272-18073291 None:intergenic 45.0%
CATAGTCTAGTACCAAGGAC+TGG + chr6_2:18073420-18073439 Msa0911490:intron 45.0%
TAGCCTATCCAAGATCCGTT+TGG - chr6_2:18073498-18073517 None:intergenic 45.0%
CCGGGATACAATAGATCGAT+TGG - chr6_2:18074410-18074429 None:intergenic 45.0%
! TTGTTTCTTGTAGGCGTCAC+CGG + chr6_2:18074437-18074456 Msa0911490:CDS 45.0%
TAGGAACGTGGAGAATGTCA+TGG - chr6_2:18072511-18072530 None:intergenic 45.0%
GAATAGGAAGCTTAGGAACG+TGG - chr6_2:18072523-18072542 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG - chr6_2:18072549-18072568 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG - chr6_2:18072550-18072569 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG - chr6_2:18072552-18072571 None:intergenic 45.0%
!! GGTTCTTCAAGGTGCTGTTA+CGG + chr6_2:18072806-18072825 Msa0911490:CDS 45.0%
TAATAAGTGGACATCGCTCG+TGG + chr6_2:18073108-18073127 Msa0911490:intron 45.0%
TGGTATCAGAGGCGAATTGT+TGG - chr6_2:18073272-18073291 None:intergenic 45.0%
CATAGTCTAGTACCAAGGAC+TGG + chr6_2:18073420-18073439 Msa0911490:intron 45.0%
TAGCCTATCCAAGATCCGTT+TGG - chr6_2:18073498-18073517 None:intergenic 45.0%
CCGGGATACAATAGATCGAT+TGG - chr6_2:18074410-18074429 None:intergenic 45.0%
! TTGTTTCTTGTAGGCGTCAC+CGG + chr6_2:18074437-18074456 Msa0911490:CDS 45.0%
!! TGAATAGTGATGGTGGGGGT+GGG - chr6_2:18072545-18072564 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG - chr6_2:18072546-18072565 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG + chr6_2:18072588-18072607 Msa0911490:CDS 50.0%
GCAGCACAAGCAACAAAAGC+AGG - chr6_2:18072747-18072766 None:intergenic 50.0%
!! TGCTTGTGCTGCGTCGTTTT+TGG + chr6_2:18072755-18072774 Msa0911490:CDS 50.0%
ACACTCTGATGTCCAGTCCT+TGG - chr6_2:18073435-18073454 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG + chr6_2:18073454-18073473 Msa0911490:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG - chr6_2:18073460-18073479 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG - chr6_2:18073461-18073480 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG + chr6_2:18073492-18073511 Msa0911490:intron 50.0%
!! GTTCTGGAAGATTCGACGTG+AGG - chr6_2:18074385-18074404 None:intergenic 50.0%
!! TGAATAGTGATGGTGGGGGT+GGG - chr6_2:18072545-18072564 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG - chr6_2:18072546-18072565 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG + chr6_2:18072588-18072607 Msa0911490:CDS 50.0%
GCAGCACAAGCAACAAAAGC+AGG - chr6_2:18072747-18072766 None:intergenic 50.0%
!! TGCTTGTGCTGCGTCGTTTT+TGG + chr6_2:18072755-18072774 Msa0911490:CDS 50.0%
ACACTCTGATGTCCAGTCCT+TGG - chr6_2:18073435-18073454 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG + chr6_2:18073454-18073473 Msa0911490:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG - chr6_2:18073460-18073479 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG - chr6_2:18073461-18073480 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG + chr6_2:18073492-18073511 Msa0911490:intron 50.0%
!! GTTCTGGAAGATTCGACGTG+AGG - chr6_2:18074385-18074404 None:intergenic 50.0%
GGGGTGGGAATAGGAAGCTT+AGG - chr6_2:18072530-18072549 None:intergenic 55.0%
GCTCGTGGATCCCACGATTT+CGG + chr6_2:18073123-18073142 Msa0911490:intron 55.0%
GCAAGTGGCCAAACGGATCT+TGG + chr6_2:18073487-18073506 Msa0911490:intron 55.0%
GGGGTGGGAATAGGAAGCTT+AGG - chr6_2:18072530-18072549 None:intergenic 55.0%
GCTCGTGGATCCCACGATTT+CGG + chr6_2:18073123-18073142 Msa0911490:intron 55.0%
GCAAGTGGCCAAACGGATCT+TGG + chr6_2:18073487-18073506 Msa0911490:intron 55.0%
!! GTGATGGTGGGGGTGGGAAT+AGG - chr6_2:18072539-18072558 None:intergenic 60.0%
!! GTGATGGTGGGGGTGGGAAT+AGG - chr6_2:18072539-18072558 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 18072454 18074884 18072454 ID=Msa0911490;Name=Msa0911490
chr6_2 mRNA 18072454 18074884 18072454 ID=Msa0911490-mRNA-1;Parent=Msa0911490;Name=Msa0911490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=56|1|1|1|1|1|2|136|271
chr6_2 exon 18072454 18072854 18072454 ID=Msa0911490-mRNA-1:exon:3749;Parent=Msa0911490-mRNA-1
chr6_2 exon 18074278 18074884 18074278 ID=Msa0911490-mRNA-1:exon:3750;Parent=Msa0911490-mRNA-1
chr6_2 five_prime_UTR 18072454 18072509 18072454 ID=Msa0911490-mRNA-1:five_prime_utr;Parent=Msa0911490-mRNA-1
chr6_2 CDS 18072510 18072854 18072510 ID=Msa0911490-mRNA-1:cds;Parent=Msa0911490-mRNA-1
chr6_2 CDS 18074278 18074748 18074278 ID=Msa0911490-mRNA-1:cds;Parent=Msa0911490-mRNA-1
chr6_2 three_prime_UTR 18074749 18074884 18074749 ID=Msa0911490-mRNA-1:three_prime_utr;Parent=Msa0911490-mRNA-1
Gene Sequence

>Msa0911490

ATGACATTCTCCACGTTCCTAAGCTTCCTATTCCCACCCCCACCATCACTATTCATCACCACCATGTCTGTCATAACATGTGTCTCACTTGCAAACGCAGGTATCAATGAAGTTAGAGGAAAACATTTAAACTATTCCAAATTCTGGAACGTTAATAACAACAATGATGAAAAGAAGAAGAAGAAGAAGATGATGACATTGTCGAGTAAAAGTGGTATGTTGTTGTTGTATACTCCTGCTTTTGTTGCTTGTGCTGCGTCGTTTTTGGTGTTTCCTGATGATGGTTTTAGATCTTTGGTTCTTCAAGGTGCTGTTACGGTTCATTTCTTTAAGAGAGTTTTTGAGGTTCTATTTGTCCACAAATATAGTGGTTCTATGGCTCTTGAAACTGCAATTCCCATAACTCTAAGTTATTTTCTCTCATCTGCAACTATGATCTATACACAACACCTCACGTCGAATCTTCCAGAACCACCAATCGATCTATTGTATCCCGGAATCGCATTGTTTCTTGTAGGCGTCACCGGCAACTTCTACCATCATTATCTTCTATCCAAATTAAGAGGAAAAGGCGAAAAAGAATACAAGATTCCTAAAGGTGGCTTGTTTGATTTTGTGATATGTCCACATTATCTTTTTGAGATCATCGGGTTTTATGGTTTTTCCTTCATTTCTCAGACATTGTATTCGTTCTCTTTCGCCATAGGCACTACTTTTTACCTTTTGGGTAGGAGTTATGCAACTAGAGAATGGTATCTCTCTAAATTTGATGATTTTCCTAAGAATGTCAAGGCTATTATTCCATTTTTGTTCTAA

Protein sequence

>Msa0911490

MTFSTFLSFLFPPPPSLFITTMSVITCVSLANAGINEVRGKHLNYSKFWNVNNNNDEKKKKKKMMTLSSKSGMLLLYTPAFVACAASFLVFPDDGFRSLVLQGAVTVHFFKRVFEVLFVHKYSGSMALETAIPITLSYFLSSATMIYTQHLTSNLPEPPIDLLYPGIALFLVGVTGNFYHHYLLSKLRGKGEKEYKIPKGGLFDFVICPHYLFEIIGFYGFSFISQTLYSFSFAIGTTFYLLGRSYATREWYLSKFDDFPKNVKAIIPFLF*