AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459920 MtrunA17_Chr3g0108631 96.429 224 8 0 37 260 1 224 6.67e-166 457
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459920 AT5G58260.1 78.652 178 31 2 85 258 35 209 4.67e-102 296
Msa0459920 AT5G58260.2 78.030 132 22 2 85 212 35 163 8.25e-72 218

Find 90 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAACATTGGTTGGAAAT+TGG 0.192954 3_3:-56891553 None:intergenic
GTAACAGTGATAGGAGTAAA+AGG 0.236532 3_3:+56891808 Msa0459920:CDS
CATGAATCTCAGGCTCATTT+AGG 0.248243 3_3:+56892662 Msa0459920:intron
TTGGTTGGAAATTGGAAATT+AGG 0.278206 3_3:-56891545 None:intergenic
ATTCATCCTTATATATCTTT+TGG 0.282822 3_3:-56893815 None:intergenic
ACCACCAGTCCTTTGGCATT+TGG 0.308230 3_3:-56892749 None:intergenic
TGACTTCATTGGAGGAGATT+TGG 0.322097 3_3:+56891863 Msa0459920:CDS
GATTTGGTTAAATTTGATAT+TGG 0.335397 3_3:+56891879 Msa0459920:CDS
ACTGGTTTGAATGAACTAAA+AGG 0.351618 3_3:+56894016 Msa0459920:three_prime_UTR
AAAACACTTACGGGACAAAC+AGG 0.372525 3_3:-56892071 None:intergenic
TATCTGCAAGTGCCTTGATT+TGG 0.379408 3_3:-56893782 None:intergenic
GACCTTACAGCTCGTGGTCT+TGG 0.380827 3_3:+56892017 Msa0459920:CDS
AGTACACCAAAAGATATATA+AGG 0.383201 3_3:+56893809 Msa0459920:three_prime_UTR
TGCAGTAGTGGAATGGGATT+AGG 0.388084 3_3:+56891840 Msa0459920:CDS
GGGAAATACCACCTTGCTAT+TGG 0.388797 3_3:-56892692 None:intergenic
GCTATGAAGCTGTTCCTTGT+TGG 0.392835 3_3:-56891732 None:intergenic
TAACCTTCAATTAGAGATAG+TGG 0.394246 3_3:-56891441 None:intergenic
ACTTTGGTGAGAGTAGTTTC+AGG 0.404266 3_3:-56892044 None:intergenic
GAAAACAATGTAACAGTGAT+AGG 0.421175 3_3:+56891799 Msa0459920:CDS
ATGGGATTAGGTGACTTCAT+TGG 0.442642 3_3:+56891852 Msa0459920:CDS
AAGCCACTCAACGAAATTGC+TGG 0.444434 3_3:+56893657 Msa0459920:CDS
ATGTTAGCCTCTGCAAGCTT+AGG 0.446007 3_3:+56891675 Msa0459920:CDS
GATCCACACCACCAGTCCTT+TGG 0.451001 3_3:-56892756 None:intergenic
GATGAATGATATTAGTTGTA+TGG 0.451236 3_3:-56891517 None:intergenic
TCATTGCTGAATGTGGAAAT+TGG 0.454528 3_3:+56893384 Msa0459920:CDS
TCAGCAATGACCCTCACATT+AGG 0.462929 3_3:-56893371 None:intergenic
CAACACTGCAAGATTGATGA+TGG 0.466592 3_3:+56891767 Msa0459920:CDS
TGCTGGACTGACCACTAGTC+AGG 0.471357 3_3:+56893674 Msa0459920:CDS
ACCAGTCCTTTGGCATTTGG+TGG 0.474336 3_3:-56892746 None:intergenic
TCCAATCTGTAATCAACCTC+TGG 0.475049 3_3:-56892716 None:intergenic
GCCTCTGCAAGCTTAGGTTG+TGG 0.477414 3_3:+56891681 Msa0459920:CDS
AAGGTTGAACTTCCAAATCA+AGG 0.486782 3_3:+56893770 Msa0459920:three_prime_UTR
GTTGAAAGATAAAGAAACAT+TGG 0.487582 3_3:-56891564 None:intergenic
ATGCCACTATCTCTAATTGA+AGG 0.489894 3_3:+56891438 Msa0459920:five_prime_UTR
AAGATGAAAATATTCCTACT+TGG 0.493351 3_3:-56893742 None:intergenic
AAAGATAAAGAAACATTGGT+TGG 0.494741 3_3:-56891560 None:intergenic
ACCAGAGGTTGATTACAGAT+TGG 0.496749 3_3:+56892715 Msa0459920:CDS
GTGAAATGCAGTAGTGGAAT+GGG 0.497585 3_3:+56891834 Msa0459920:CDS
GGGACAAACAGGGTGAACTT+TGG 0.524930 3_3:-56892060 None:intergenic
CACCAAGACCACGAGCTGTA+AGG 0.525141 3_3:-56892019 None:intergenic
TGTTCCTTAGGTTCTCTCCA+AGG 0.526918 3_3:+56893310 Msa0459920:intron
AAGGAATTGTAGTTCAGCCT+TGG 0.529522 3_3:-56893327 None:intergenic
TTGCTCTGCTGCCAACACTA+AGG 0.531993 3_3:+56893348 Msa0459920:CDS
TAACAGTGATAGGAGTAAAA+GGG 0.533608 3_3:+56891809 Msa0459920:CDS
CCTCATGAAGGAGGGTATGA+AGG 0.537717 3_3:+56891951 Msa0459920:CDS
AGTCCAGCAATTTCGTTGAG+TGG 0.542281 3_3:-56893660 None:intergenic
TTTCTTGACCTTACAGCTCG+TGG 0.545690 3_3:+56892011 Msa0459920:CDS
AGTGAAATGCAGTAGTGGAA+TGG 0.546731 3_3:+56891833 Msa0459920:CDS
CTGCAAGATTGATGATGGGT+TGG 0.552624 3_3:+56891772 Msa0459920:CDS
GTACATATCACTCATGGTTG+TGG 0.558222 3_3:-56893865 None:intergenic
GAGAAATGAGATAAAGTGAT+CGG 0.565737 3_3:-56891492 None:intergenic
GAGTGATATGTACATTCTCA+AGG 0.567704 3_3:+56893875 Msa0459920:three_prime_UTR
GGATTAGGTGACTTCATTGG+AGG 0.569123 3_3:+56891855 Msa0459920:CDS
AATCTGTAATCAACCTCTGG+TGG 0.569201 3_3:-56892713 None:intergenic
ATATATACTCCTCATGAAGG+AGG 0.584569 3_3:+56891942 Msa0459920:CDS
ACCACCAAATGCCAAAGGAC+TGG 0.587702 3_3:+56892745 Msa0459920:CDS
TTATCGCGTCTTCAACGTCA+AGG 0.593630 3_3:+56891981 Msa0459920:CDS
GAGAATGTACATATCACTCA+TGG 0.594264 3_3:-56893871 None:intergenic
TTAAATTTGATATTGGACGT+TGG 0.596364 3_3:+56891886 Msa0459920:CDS
AACACTAAGGCCTAATGTGA+GGG 0.598775 3_3:+56893361 Msa0459920:CDS
GCAATATATACTCCTCATGA+AGG 0.600567 3_3:+56891939 Msa0459920:CDS
GTGAGGGTCATTGCTGAATG+TGG 0.601568 3_3:+56893377 Msa0459920:CDS
GGAAATTGGAAATTAGGCGG+AGG 0.601634 3_3:-56891539 None:intergenic
CTATCAAGCTTCCTGACTAG+TGG 0.601785 3_3:-56893685 None:intergenic
CTCACATTAGGCCTTAGTGT+TGG 0.607755 3_3:-56893359 None:intergenic
GTTGGAAATTGGAAATTAGG+CGG 0.609009 3_3:-56891542 None:intergenic
TGCTGAATGTTAGAGCATGT+TGG 0.609400 3_3:-56891708 None:intergenic
TTAGTGTTGGCAGCAGAGCA+AGG 0.611894 3_3:-56893346 None:intergenic
ATGCCAAAGGACTGGTGGTG+TGG 0.615122 3_3:+56892753 Msa0459920:CDS
CAACACTAAGGCCTAATGTG+AGG 0.616666 3_3:+56893360 Msa0459920:CDS
GAATGATATTAGTTGTATGG+TGG 0.617217 3_3:-56891514 None:intergenic
AGGGCAGTGAAATGCAGTAG+TGG 0.620659 3_3:+56891828 Msa0459920:CDS
ATCTGTAATCAACCTCTGGT+GGG 0.628296 3_3:-56892712 None:intergenic
TCTGCAAGCTTAGGTTGTGG+AGG 0.630890 3_3:+56891684 Msa0459920:CDS
AAAGTGATCGGTGAGAGAGA+AGG 0.633846 3_3:-56891480 None:intergenic
CCTTCATACCCTCCTTCATG+AGG 0.634611 3_3:-56891951 None:intergenic
TAGGAAAGCAACCAATAGCA+AGG 0.634862 3_3:+56892681 Msa0459920:CDS
TATATACTCCTCATGAAGGA+GGG 0.636161 3_3:+56891943 Msa0459920:CDS
GGTGTGGATCATTGAAGCCA+AGG 0.636653 3_3:+56892769 Msa0459920:CDS
CTAACATTCAGCAACCAACA+AGG 0.653000 3_3:+56891718 Msa0459920:CDS
TCCACAACCTAAGCTTGCAG+AGG 0.654833 3_3:-56891682 None:intergenic
GCATTACCACCAAATGCCAA+AGG 0.660442 3_3:+56892740 Msa0459920:CDS
AAGGTGGTATTTCCCACCAG+AGG 0.661184 3_3:+56892700 Msa0459920:CDS
AGATTGATGATGGGTTGGAG+AGG 0.661381 3_3:+56891777 Msa0459920:CDS
ACCAAATGCCAAAGGACTGG+TGG 0.665822 3_3:+56892748 Msa0459920:CDS
AACACTGCAAGATTGATGAT+GGG 0.669110 3_3:+56891768 Msa0459920:CDS
GATAGTGGCATATCATCATG+TGG 0.679678 3_3:-56891426 None:intergenic
TGATCAGGAGAAAGTTTACG+TGG 0.681866 3_3:+56893634 Msa0459920:intron
AAACACTTACGGGACAAACA+GGG 0.683343 3_3:-56892070 None:intergenic
GAAAGCAACCAATAGCAAGG+TGG 0.723318 3_3:+56892684 Msa0459920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTATGAAAATAAA+AGG + chr3_3:56892998-56893017 Msa0459920:intron 10.0%
!!! TTGTTTTTATGAAAATAAAA+GGG + chr3_3:56892999-56893018 Msa0459920:intron 10.0%
!! AAAAACATTATTAGAAAATT+TGG - chr3_3:56893417-56893436 None:intergenic 10.0%
!!! CTCTTTTCTTATTAATTTTA+TGG + chr3_3:56892161-56892180 Msa0459920:intron 15.0%
!! ATTATTTGTATTATATCTCT+AGG + chr3_3:56892935-56892954 Msa0459920:intron 15.0%
!! TGAATATACATTAATTTATC+TGG + chr3_3:56893255-56893274 Msa0459920:intron 15.0%
!!! GATTTGGTTAAATTTGATAT+TGG + chr3_3:56891879-56891898 Msa0459920:CDS 20.0%
!! AAAGAAAGAAAAAACACTTA+CGG - chr3_3:56892084-56892103 None:intergenic 20.0%
!!! AAGCCAAAAAAGAATTTTAA+AGG - chr3_3:56892365-56892384 None:intergenic 20.0%
!! AAACAATTTCATCAGAAAAT+AGG - chr3_3:56892977-56892996 None:intergenic 20.0%
!!! TTTTTATGAAAATAAAAGGG+AGG + chr3_3:56893002-56893021 Msa0459920:intron 20.0%
!! TCATGGAAAGTTATAAATAA+AGG + chr3_3:56893080-56893099 Msa0459920:intron 20.0%
!!! AATATTTTCATCTTTCTTCA+AGG + chr3_3:56893751-56893770 Msa0459920:three_prime_UTR 20.0%
!!! ATTCATCCTTATATATCTTT+TGG - chr3_3:56893818-56893837 None:intergenic 20.0%
! GATGAATGATATTAGTTGTA+TGG - chr3_3:56891520-56891539 None:intergenic 25.0%
! AAAGATAAAGAAACATTGGT+TGG - chr3_3:56891563-56891582 None:intergenic 25.0%
! GTTGAAAGATAAAGAAACAT+TGG - chr3_3:56891567-56891586 None:intergenic 25.0%
! TTAAATTTGATATTGGACGT+TGG + chr3_3:56891886-56891905 Msa0459920:CDS 25.0%
! AAGAAAGAAAAAACACTTAC+GGG - chr3_3:56892083-56892102 None:intergenic 25.0%
!!! AAGCTTTGAAAATTCTGTTT+AGG + chr3_3:56892108-56892127 Msa0459920:intron 25.0%
!!! AGATACTCGAATCTATTTTT+AGG - chr3_3:56892232-56892251 None:intergenic 25.0%
!!! GCTCCTTTAAAATTCTTTTT+TGG + chr3_3:56892359-56892378 Msa0459920:intron 25.0%
!!! ATTCTGTTTTAAGTATGTGA+GGG - chr3_3:56892831-56892850 None:intergenic 25.0%
!!! AAATGCTTTTAGGAAAAGTA+TGG + chr3_3:56892909-56892928 Msa0459920:intron 25.0%
! AATTTCATCAGAAAATAGGT+GGG - chr3_3:56892973-56892992 None:intergenic 25.0%
! GAGATTCTAATATCATATCA+TGG + chr3_3:56893063-56893082 Msa0459920:intron 25.0%
! ATTGCAACAAATTACAAATG+AGG - chr3_3:56893135-56893154 None:intergenic 25.0%
! TATATTCACCTAACAACAAT+CGG - chr3_3:56893243-56893262 None:intergenic 25.0%
! AATTTCCAACTTTATATGCA+AGG + chr3_3:56893537-56893556 Msa0459920:intron 25.0%
! AAGATGAAAATATTCCTACT+TGG - chr3_3:56893745-56893764 None:intergenic 25.0%
! AGTACACCAAAAGATATATA+AGG + chr3_3:56893809-56893828 Msa0459920:three_prime_UTR 25.0%
TAACCTTCAATTAGAGATAG+TGG - chr3_3:56891444-56891463 None:intergenic 30.0%
GAGAAATGAGATAAAGTGAT+CGG - chr3_3:56891495-56891514 None:intergenic 30.0%
GAATGATATTAGTTGTATGG+TGG - chr3_3:56891517-56891536 None:intergenic 30.0%
TTGGTTGGAAATTGGAAATT+AGG - chr3_3:56891548-56891567 None:intergenic 30.0%
! AAGAAACATTGGTTGGAAAT+TGG - chr3_3:56891556-56891575 None:intergenic 30.0%
GAAAACAATGTAACAGTGAT+AGG + chr3_3:56891799-56891818 Msa0459920:CDS 30.0%
TAACAGTGATAGGAGTAAAA+GGG + chr3_3:56891809-56891828 Msa0459920:CDS 30.0%
TTTATGGATGAAATTGACCA+AGG + chr3_3:56892177-56892196 Msa0459920:intron 30.0%
TTATGGATGAAATTGACCAA+GGG + chr3_3:56892178-56892197 Msa0459920:intron 30.0%
ATAGATGAAAGATACTCTTG+TGG + chr3_3:56892260-56892279 Msa0459920:intron 30.0%
TAGATGAAAGATACTCTTGT+GGG + chr3_3:56892261-56892280 Msa0459920:intron 30.0%
CTTGCAATTTCGATACATTT+AGG + chr3_3:56892288-56892307 Msa0459920:intron 30.0%
! AAAGGAGCAAACAACTATTT+TGG - chr3_3:56892347-56892366 None:intergenic 30.0%
! ACACTTTCAAATGAAAGTGT+TGG - chr3_3:56892426-56892445 None:intergenic 30.0%
! AGAATTTTGTCATGAATCTC+AGG + chr3_3:56892652-56892671 Msa0459920:intron 30.0%
!! TTCTGTTTTAAGTATGTGAG+GGG - chr3_3:56892830-56892849 None:intergenic 30.0%
!! CATTCTGTTTTAAGTATGTG+AGG - chr3_3:56892832-56892851 None:intergenic 30.0%
!! CTAAAAGCATTTGATTGAGA+TGG - chr3_3:56892901-56892920 None:intergenic 30.0%
! CATCTCAATCAAATGCTTTT+AGG + chr3_3:56892899-56892918 Msa0459920:intron 30.0%
CAATTTCATCAGAAAATAGG+TGG - chr3_3:56892974-56892993 None:intergenic 30.0%
AAAATAAAAGGGAGGTGATA+AGG + chr3_3:56893010-56893029 Msa0459920:intron 30.0%
TTTATATGCAAGGTCTAGTT+TGG + chr3_3:56893547-56893566 Msa0459920:intron 30.0%
AACATGAGAATGAGATTTCT+TGG - chr3_3:56893602-56893621 None:intergenic 30.0%
GTTTGTTTATGTGAATGATC+AGG + chr3_3:56893619-56893638 Msa0459920:intron 30.0%
!! TATTCCTACTTGGTTTTTGA+TGG - chr3_3:56893735-56893754 None:intergenic 30.0%
!! CTCAAGGTTTAATTTTGTCA+TGG + chr3_3:56893891-56893910 Msa0459920:three_prime_UTR 30.0%
CTAGATGAGAAAAAGAAAAC+TGG + chr3_3:56893998-56894017 Msa0459920:three_prime_UTR 30.0%
!! ACTGGTTTGAATGAACTAAA+AGG + chr3_3:56894016-56894035 Msa0459920:three_prime_UTR 30.0%
ATGCCACTATCTCTAATTGA+AGG + chr3_3:56891438-56891457 Msa0459920:five_prime_UTR 35.0%
GTTGGAAATTGGAAATTAGG+CGG - chr3_3:56891545-56891564 None:intergenic 35.0%
! AACACTGCAAGATTGATGAT+GGG + chr3_3:56891768-56891787 Msa0459920:CDS 35.0%
GTAACAGTGATAGGAGTAAA+AGG + chr3_3:56891808-56891827 Msa0459920:CDS 35.0%
GCAATATATACTCCTCATGA+AGG + chr3_3:56891939-56891958 Msa0459920:CDS 35.0%
ATATATACTCCTCATGAAGG+AGG + chr3_3:56891942-56891961 Msa0459920:CDS 35.0%
TATATACTCCTCATGAAGGA+GGG + chr3_3:56891943-56891962 Msa0459920:CDS 35.0%
CAAGCTATGCATTAGAATCA+TGG - chr3_3:56892138-56892157 None:intergenic 35.0%
ACCAAGGGAAAACATATTTG+AGG + chr3_3:56892193-56892212 Msa0459920:intron 35.0%
! TCCTCAAATATGTTTTCCCT+TGG - chr3_3:56892197-56892216 None:intergenic 35.0%
!!! TTTTGGTTCTTGAATGTGTG+AGG - chr3_3:56892330-56892349 None:intergenic 35.0%
CTAACAACAATCGGATTTCT+TGG - chr3_3:56893234-56893253 None:intergenic 35.0%
! CAAGAAATCCGATTGTTGTT+AGG + chr3_3:56893232-56893251 Msa0459920:intron 35.0%
AATTTATCTGGTCAAATGCG+CGG + chr3_3:56893267-56893286 Msa0459920:intron 35.0%
TCATTGCTGAATGTGGAAAT+TGG + chr3_3:56893384-56893403 Msa0459920:CDS 35.0%
CTAGACCTTGCATATAAAGT+TGG - chr3_3:56893545-56893564 None:intergenic 35.0%
ATGAGAATGAGATTTCTTGG+TGG - chr3_3:56893599-56893618 None:intergenic 35.0%
AAGGTTGAACTTCCAAATCA+AGG + chr3_3:56893770-56893789 Msa0459920:three_prime_UTR 35.0%
GAGAATGTACATATCACTCA+TGG - chr3_3:56893874-56893893 None:intergenic 35.0%
GAGTGATATGTACATTCTCA+AGG + chr3_3:56893875-56893894 Msa0459920:three_prime_UTR 35.0%
! GATAGTGGCATATCATCATG+TGG - chr3_3:56891429-56891448 None:intergenic 40.0%
TGCTGAATGTTAGAGCATGT+TGG - chr3_3:56891711-56891730 None:intergenic 40.0%
CTAACATTCAGCAACCAACA+AGG + chr3_3:56891718-56891737 Msa0459920:CDS 40.0%
CAACACTGCAAGATTGATGA+TGG + chr3_3:56891767-56891786 Msa0459920:CDS 40.0%
! AGTGAAATGCAGTAGTGGAA+TGG + chr3_3:56891833-56891852 Msa0459920:CDS 40.0%
! GTGAAATGCAGTAGTGGAAT+GGG + chr3_3:56891834-56891853 Msa0459920:CDS 40.0%
ATGGGATTAGGTGACTTCAT+TGG + chr3_3:56891852-56891871 Msa0459920:CDS 40.0%
TGACTTCATTGGAGGAGATT+TGG + chr3_3:56891863-56891882 Msa0459920:CDS 40.0%
ACTTTGGTGAGAGTAGTTTC+AGG - chr3_3:56892047-56892066 None:intergenic 40.0%
AAACACTTACGGGACAAACA+GGG - chr3_3:56892073-56892092 None:intergenic 40.0%
AAAACACTTACGGGACAAAC+AGG - chr3_3:56892074-56892093 None:intergenic 40.0%
!! AGTGTTGGTACGTACTACAT+TGG - chr3_3:56892411-56892430 None:intergenic 40.0%
CACATGTATCGTTGTACTGT+TGG - chr3_3:56892481-56892500 None:intergenic 40.0%
CAACAGTACAACGATACATG+TGG + chr3_3:56892479-56892498 Msa0459920:intron 40.0%
GTACAACGATACATGTGGTT+TGG + chr3_3:56892484-56892503 Msa0459920:intron 40.0%
CTTCATAGATTATGTCGCAC+TGG + chr3_3:56892597-56892616 Msa0459920:intron 40.0%
CATGAATCTCAGGCTCATTT+AGG + chr3_3:56892662-56892681 Msa0459920:intron 40.0%
TAGGAAAGCAACCAATAGCA+AGG + chr3_3:56892681-56892700 Msa0459920:CDS 40.0%
ATCTGTAATCAACCTCTGGT+GGG - chr3_3:56892715-56892734 None:intergenic 40.0%
AATCTGTAATCAACCTCTGG+TGG - chr3_3:56892716-56892735 None:intergenic 40.0%
! ACCAGAGGTTGATTACAGAT+TGG + chr3_3:56892715-56892734 Msa0459920:CDS 40.0%
TCCAATCTGTAATCAACCTC+TGG - chr3_3:56892719-56892738 None:intergenic 40.0%
TTGCAGTTAAGCTGTGATAC+TGG - chr3_3:56893170-56893189 None:intergenic 40.0%
ACAACAATCGGATTTCTTGG+TGG - chr3_3:56893231-56893250 None:intergenic 40.0%
! GCGGTACTAAAATGTTGCTT+TGG + chr3_3:56893286-56893305 Msa0459920:intron 40.0%
AAGGAATTGTAGTTCAGCCT+TGG - chr3_3:56893330-56893349 None:intergenic 40.0%
AACACTAAGGCCTAATGTGA+GGG + chr3_3:56893361-56893380 Msa0459920:CDS 40.0%
TGCTGAATGTGGAAATTGGT+AGG + chr3_3:56893388-56893407 Msa0459920:intron 40.0%
TGTTGCAAAACTTGTGCTTG+AGG + chr3_3:56893493-56893512 Msa0459920:intron 40.0%
TGATCAGGAGAAAGTTTACG+TGG + chr3_3:56893634-56893653 Msa0459920:intron 40.0%
!! CCTACTTGGTTTTTGATGGA+TGG - chr3_3:56893731-56893750 None:intergenic 40.0%
CCATCCATCAAAAACCAAGT+AGG + chr3_3:56893728-56893747 Msa0459920:three_prime_UTR 40.0%
TATCTGCAAGTGCCTTGATT+TGG - chr3_3:56893785-56893804 None:intergenic 40.0%
GTACATATCACTCATGGTTG+TGG - chr3_3:56893868-56893887 None:intergenic 40.0%
AAAGTGATCGGTGAGAGAGA+AGG - chr3_3:56891483-56891502 None:intergenic 45.0%
GGAAATTGGAAATTAGGCGG+AGG - chr3_3:56891542-56891561 None:intergenic 45.0%
! ATGTTAGCCTCTGCAAGCTT+AGG + chr3_3:56891675-56891694 Msa0459920:CDS 45.0%
GCTATGAAGCTGTTCCTTGT+TGG - chr3_3:56891735-56891754 None:intergenic 45.0%
!! CTGCAAGATTGATGATGGGT+TGG + chr3_3:56891772-56891791 Msa0459920:CDS 45.0%
!! AGATTGATGATGGGTTGGAG+AGG + chr3_3:56891777-56891796 Msa0459920:CDS 45.0%
! TGCAGTAGTGGAATGGGATT+AGG + chr3_3:56891840-56891859 Msa0459920:CDS 45.0%
GGATTAGGTGACTTCATTGG+AGG + chr3_3:56891855-56891874 Msa0459920:CDS 45.0%
TTATCGCGTCTTCAACGTCA+AGG + chr3_3:56891981-56892000 Msa0459920:CDS 45.0%
TTTCTTGACCTTACAGCTCG+TGG + chr3_3:56892011-56892030 Msa0459920:CDS 45.0%
GAAAGCAACCAATAGCAAGG+TGG + chr3_3:56892684-56892703 Msa0459920:CDS 45.0%
! GGGAAATACCACCTTGCTAT+TGG - chr3_3:56892695-56892714 None:intergenic 45.0%
GCATTACCACCAAATGCCAA+AGG + chr3_3:56892740-56892759 Msa0459920:CDS 45.0%
GTAAAGCATGATCCACACCT+TGG - chr3_3:56892789-56892808 None:intergenic 45.0%
! GATTTCTTGGTGGTTTCGTC+AGG - chr3_3:56893221-56893240 None:intergenic 45.0%
!! TGTTGCTTTGGCTGTTCCTT+AGG + chr3_3:56893298-56893317 Msa0459920:intron 45.0%
TGTTCCTTAGGTTCTCTCCA+AGG + chr3_3:56893310-56893329 Msa0459920:intron 45.0%
CTCACATTAGGCCTTAGTGT+TGG - chr3_3:56893362-56893381 None:intergenic 45.0%
CAACACTAAGGCCTAATGTG+AGG + chr3_3:56893360-56893379 Msa0459920:CDS 45.0%
TCAGCAATGACCCTCACATT+AGG - chr3_3:56893374-56893393 None:intergenic 45.0%
AAGCCACTCAACGAAATTGC+TGG + chr3_3:56893657-56893676 Msa0459920:CDS 45.0%
AGTCCAGCAATTTCGTTGAG+TGG - chr3_3:56893663-56893682 None:intergenic 45.0%
CTATCAAGCTTCCTGACTAG+TGG - chr3_3:56893688-56893707 None:intergenic 45.0%
TCCACAACCTAAGCTTGCAG+AGG - chr3_3:56891685-56891704 None:intergenic 50.0%
! TCTGCAAGCTTAGGTTGTGG+AGG + chr3_3:56891684-56891703 Msa0459920:CDS 50.0%
AGGGCAGTGAAATGCAGTAG+TGG + chr3_3:56891828-56891847 Msa0459920:CDS 50.0%
CCTTCATACCCTCCTTCATG+AGG - chr3_3:56891954-56891973 None:intergenic 50.0%
! CCTCATGAAGGAGGGTATGA+AGG + chr3_3:56891951-56891970 Msa0459920:CDS 50.0%
GGGACAAACAGGGTGAACTT+TGG - chr3_3:56892063-56892082 None:intergenic 50.0%
AAGGTGGTATTTCCCACCAG+AGG + chr3_3:56892700-56892719 Msa0459920:CDS 50.0%
ACCACCAAATGCCAAAGGAC+TGG + chr3_3:56892745-56892764 Msa0459920:CDS 50.0%
ACCAGTCCTTTGGCATTTGG+TGG - chr3_3:56892749-56892768 None:intergenic 50.0%
ACCAAATGCCAAAGGACTGG+TGG + chr3_3:56892748-56892767 Msa0459920:CDS 50.0%
ACCACCAGTCCTTTGGCATT+TGG - chr3_3:56892752-56892771 None:intergenic 50.0%
GGTGTGGATCATTGAAGCCA+AGG + chr3_3:56892769-56892788 Msa0459920:CDS 50.0%
GGATCATTGAAGCCAAGGTG+TGG + chr3_3:56892774-56892793 Msa0459920:intron 50.0%
TCAGCCTTGGAGAGAACCTA+AGG - chr3_3:56893317-56893336 None:intergenic 50.0%
!! TTAGTGTTGGCAGCAGAGCA+AGG - chr3_3:56893349-56893368 None:intergenic 50.0%
TTGCTCTGCTGCCAACACTA+AGG + chr3_3:56893348-56893367 Msa0459920:CDS 50.0%
GTGAGGGTCATTGCTGAATG+TGG + chr3_3:56893377-56893396 Msa0459920:CDS 50.0%
! GCCTCTGCAAGCTTAGGTTG+TGG + chr3_3:56891681-56891700 Msa0459920:CDS 55.0%
GACCTTACAGCTCGTGGTCT+TGG + chr3_3:56892017-56892036 Msa0459920:CDS 55.0%
CACCAAGACCACGAGCTGTA+AGG - chr3_3:56892022-56892041 None:intergenic 55.0%
! ATGCCAAAGGACTGGTGGTG+TGG + chr3_3:56892753-56892772 Msa0459920:CDS 55.0%
GATCCACACCACCAGTCCTT+TGG - chr3_3:56892759-56892778 None:intergenic 55.0%
TGCTGGACTGACCACTAGTC+AGG + chr3_3:56893674-56893693 Msa0459920:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 56891405 56894056 56891405 ID=Msa0459920;Name=Msa0459920
chr3_3 mRNA 56891405 56894056 56891405 ID=Msa0459920-mRNA-1;Parent=Msa0459920;Name=Msa0459920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=162|1|1|1|1|1|4|352|260
chr3_3 exon 56891405 56892082 56891405 ID=Msa0459920-mRNA-1:exon:11452;Parent=Msa0459920-mRNA-1
chr3_3 exon 56892674 56892790 56892674 ID=Msa0459920-mRNA-1:exon:11453;Parent=Msa0459920-mRNA-1
chr3_3 exon 56893320 56893405 56893320 ID=Msa0459920-mRNA-1:exon:11454;Parent=Msa0459920-mRNA-1
chr3_3 exon 56893641 56894056 56893641 ID=Msa0459920-mRNA-1:exon:11455;Parent=Msa0459920-mRNA-1
chr3_3 five_prime_UTR 56891405 56891566 56891405 ID=Msa0459920-mRNA-1:five_prime_utr;Parent=Msa0459920-mRNA-1
chr3_3 CDS 56891567 56892082 56891567 ID=Msa0459920-mRNA-1:cds;Parent=Msa0459920-mRNA-1
chr3_3 CDS 56892674 56892790 56892674 ID=Msa0459920-mRNA-1:cds;Parent=Msa0459920-mRNA-1
chr3_3 CDS 56893320 56893405 56893320 ID=Msa0459920-mRNA-1:cds;Parent=Msa0459920-mRNA-1
chr3_3 CDS 56893641 56893704 56893641 ID=Msa0459920-mRNA-1:cds;Parent=Msa0459920-mRNA-1
chr3_3 three_prime_UTR 56893705 56894056 56893705 ID=Msa0459920-mRNA-1:three_prime_utr;Parent=Msa0459920-mRNA-1
Gene Sequence

>Msa0459920

ATGTTTCTTTATCTTTCAACTTATGAAGAAAGAAAAAGAAAACATGTACATTATTCAACAATAAGTTTCTTAATTAGCACAAAAAAAAAACAAAGAAACAAAACAAAAATGTTAGCCTCTGCAAGCTTAGGTTGTGGAGGACCAACATGCTCTAACATTCAGCAACCAACAAGGAACAGCTTCATAGCTGAAAATCATAACAACACTGCAAGATTGATGATGGGTTGGAGAGGAAAACAATGTAACAGTGATAGGAGTAAAAGGGCAGTGAAATGCAGTAGTGGAATGGGATTAGGTGACTTCATTGGAGGAGATTTGGTTAAATTTGATATTGGACGTTGGCTTTCAGATGTTGAAGAGCATAAAGCACTTGCAATATATACTCCTCATGAAGGAGGGTATGAAGGACGTTACTTATCGCGTCTTCAACGTCAAGGTTACTATTTTCTTGACCTTACAGCTCGTGGTCTTGGTGATCCTGAAACTACTCTCACCAAAGTTCACCCTGTTTGTCCCGCTCATTTAGGAAAGCAACCAATAGCAAGGTGGTATTTCCCACCAGAGGTTGATTACAGATTGGAAGCATTACCACCAAATGCCAAAGGACTGGTGGTGTGGATCATTGAAGCCAAGGTTCTCTCCAAGGCTGAACTACAATTCCTTGCTCTGCTGCCAACACTAAGGCCTAATGTGAGGGTCATTGCTGAATGTGGAAATTGGAGAAAGTTTACGTGGAAGCCACTCAACGAAATTGCTGGACTGACCACTAGTCAGGAAGCTTGA

Protein sequence

>Msa0459920

MFLYLSTYEERKRKHVHYSTISFLISTKKKQRNKTKMLASASLGCGGPTCSNIQQPTRNSFIAENHNNTARLMMGWRGKQCNSDRSKRAVKCSSGMGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLDLTARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVIAECGNWRKFTWKPLNEIAGLTTSQEA*