AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0022230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022230 MtrunA17_Chr1g0175321 97.627 295 7 0 1 295 3 297 0.0 591
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022230 AT2G42130.4 67.986 278 82 4 23 295 24 299 7.25e-133 379
Msa0022230 AT3G58010.1 69.262 244 72 2 39 280 48 290 1.32e-126 363
Msa0022230 AT3G58010.2 69.262 244 72 2 39 280 48 290 1.32e-126 363
Msa0022230 AT2G42130.3 66.667 273 66 4 46 295 1 271 2.34e-125 358
Msa0022230 AT2G42130.2 70.445 247 67 3 23 264 24 269 2.27e-122 351
Msa0022230 AT2G42130.1 67.227 238 72 3 23 255 24 260 5.21e-110 320
Msa0022230 AT2G42130.5 71.569 204 57 1 92 295 2 204 1.04e-105 306

Find 83 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAACAGCCATTGAAAAT+TGG 0.237831 1_1:-41411391 None:intergenic
TGGTTTGGTCCCGGATCTCC+TGG 0.255631 1_1:+41412906 Msa0022230:CDS
CAATTCCTTCATCTTCTTCA+TGG 0.258486 1_1:+41411462 Msa0022230:CDS
TTTACTTAACACCTCGAATA+AGG 0.269104 1_1:-41415406 None:intergenic
CATAGGGAATTTAAAGTAAC+AGG 0.273960 1_1:-41415432 None:intergenic
TGATACTAAAACATGAAATA+TGG 0.307908 1_1:-41415501 None:intergenic
TCGAGTCTCGTTAAAACTTC+TGG 0.337043 1_1:-41415304 None:intergenic
CGATGGAACTTTGAGTGGTT+TGG 0.345387 1_1:+41412891 Msa0022230:CDS
CGATGCATCGCCGTCATCCC+TGG 0.349723 1_1:+41415324 Msa0022230:CDS
TGGTTCTGATGCAGATAATA+AGG 0.361190 1_1:+41415266 Msa0022230:intron
AACACCTAGCTTTCATAATC+TGG 0.372388 1_1:-41415358 None:intergenic
TACGTTGTGGGCCGAGGTGT+TGG 0.377460 1_1:-41412774 None:intergenic
GACAAATTAGCTAAACTTGA+AGG 0.384219 1_1:-41413096 None:intergenic
CGCAAACAACCCAGGAGATC+CGG 0.385131 1_1:-41412916 None:intergenic
AGAGTACCAGATCAGCTTAA+AGG 0.398637 1_1:+41413637 Msa0022230:CDS
GTCTCTTACGTTGTGGGCCG+AGG 0.406335 1_1:-41412780 None:intergenic
TGCTGCTTATGCTAAGGAAA+TGG 0.412492 1_1:+41411562 Msa0022230:CDS
ATGAAAGCTAGGTGTTTGTA+TGG 0.422518 1_1:+41415365 Msa0022230:exon
TGGCCCCTCCACAGTTAACT+TGG 0.446873 1_1:-41413554 None:intergenic
AACTTTGAGTGGTTTGGTCC+CGG 0.448840 1_1:+41412897 Msa0022230:CDS
TACAGGTCACCCTTTCTAGA+AGG 0.454407 1_1:+41412867 Msa0022230:intron
CTCCTGGGTTGTTTGCGGCT+AGG 0.461597 1_1:+41412922 Msa0022230:CDS
GATGTGAATGAAAGGATAAC+GGG 0.462476 1_1:+41412735 Msa0022230:CDS
ATGAAGGAGGAGTATGTGGA+AGG 0.466751 1_1:+41413583 Msa0022230:CDS
AGTGCACCTTTAAGCTGATC+TGG 0.469556 1_1:-41413643 None:intergenic
TATTGTGTCACCAACAGTCT+TGG 0.471270 1_1:+41413609 Msa0022230:CDS
CGGATCTCCTGGGTTGTTTG+CGG 0.479716 1_1:+41412917 Msa0022230:CDS
AAAGTGTTGTTGTTCAACTT+AGG 0.480579 1_1:-41411343 None:intergenic
GCTTAAAGGTGCACTTGGGC+AGG 0.488898 1_1:+41413651 Msa0022230:CDS
ATGGATGTCTTTATCAAGGA+TGG 0.497103 1_1:+41413123 Msa0022230:CDS
TTACGTGATGCTCTCGCCGA+TGG 0.498253 1_1:+41413706 Msa0022230:CDS
TGAAACTTCTATATTCACAT+AGG 0.501299 1_1:-41415449 None:intergenic
GCAAACAACCCAGGAGATCC+GGG 0.502036 1_1:-41412915 None:intergenic
TGATGTGAATGAAAGGATAA+CGG 0.504697 1_1:+41412734 Msa0022230:CDS
TTCCATCGACCTTCTAGAAA+GGG 0.507609 1_1:-41412876 None:intergenic
GATCAGCTTAAAGGTGCACT+TGG 0.509335 1_1:+41413646 Msa0022230:CDS
GAAGCGATTCTTTAGCAGAA+AGG 0.509807 1_1:-41411589 None:intergenic
GTTCCATCGACCTTCTAGAA+AGG 0.510788 1_1:-41412877 None:intergenic
GAAACTTCTATATTCACATA+GGG 0.514617 1_1:-41415448 None:intergenic
GCTATGGTTCAAGTTCAAAC+TGG 0.521173 1_1:+41411533 Msa0022230:CDS
GCGTGGAATTTGCAGAGCTA+TGG 0.521443 1_1:+41411517 Msa0022230:CDS
CAGATAATAAGGAACACAGC+TGG 0.524577 1_1:+41415277 Msa0022230:intron
TGAAGGAGGAGTATGTGGAA+GGG 0.525928 1_1:+41413584 Msa0022230:CDS
TCACTTCAACATGGAATGGA+AGG 0.528937 1_1:-41411366 None:intergenic
AATCTGGACTTGATTCTCCC+AGG 0.529092 1_1:-41415342 None:intergenic
TAGAATGAAGGAGGAGTATG+TGG 0.529401 1_1:+41413579 Msa0022230:CDS
AAGTCCAGATTATGAAAGCT+AGG 0.531868 1_1:+41415354 Msa0022230:CDS
TCAACCAAGTTAACTGTGGA+GGG 0.536332 1_1:+41413550 Msa0022230:CDS
GGTTTCACTTCAACATGGAA+TGG 0.536539 1_1:-41411370 None:intergenic
ATTTCCTTAGCATAAGCAGC+AGG 0.537111 1_1:-41411560 None:intergenic
AAAGAATTGATGTGAATGAA+AGG 0.540601 1_1:+41412727 Msa0022230:CDS
CTTGATTCTCCCAGGGATGA+CGG 0.547658 1_1:-41415334 None:intergenic
TACTCCTCCTTCATTCTAAG+TGG 0.548015 1_1:-41413574 None:intergenic
GATGCATCGCCGTCATCCCT+GGG 0.548574 1_1:+41415325 Msa0022230:CDS
TACGTGATGCTCTCGCCGAT+GGG 0.553971 1_1:+41413707 Msa0022230:CDS
ATCTGGACTTGATTCTCCCA+GGG 0.556575 1_1:-41415341 None:intergenic
CACCCTTTCTAGAAGGTCGA+TGG 0.556922 1_1:+41412874 Msa0022230:CDS
GGTTTGGTCCCGGATCTCCT+GGG 0.558547 1_1:+41412907 Msa0022230:CDS
AGAGCATCACGTAAAGGTAC+GGG 0.563086 1_1:-41413697 None:intergenic
ACTTTCCATGAAGAAGATGA+AGG 0.563489 1_1:-41411467 None:intergenic
CTCAACCAAGTTAACTGTGG+AGG 0.564278 1_1:+41413549 Msa0022230:CDS
GAGAGCATCACGTAAAGGTA+CGG 0.569225 1_1:-41413698 None:intergenic
AAGGTCGATGGAACTTTGAG+TGG 0.570543 1_1:+41412886 Msa0022230:CDS
GGAGGGGCCACTTAGAATGA+AGG 0.571028 1_1:+41413567 Msa0022230:CDS
AGATAATAAGGAACACAGCT+GGG 0.572812 1_1:+41415278 Msa0022230:intron
CGCATCACGTGGCAGAAGCG+TGG 0.577423 1_1:+41411500 Msa0022230:CDS
TCGGCGAGAGCATCACGTAA+AGG 0.589648 1_1:-41413703 None:intergenic
GACTAAGCTCTCAAAACCAC+CGG 0.590188 1_1:-41412682 None:intergenic
ACTCTGTCTTCCAAGACTGT+TGG 0.591239 1_1:-41413619 None:intergenic
ATCCTAGCCGCAAACAACCC+AGG 0.599125 1_1:-41412924 None:intergenic
AAATTGGTTTCACTTCAACA+TGG 0.618054 1_1:-41411375 None:intergenic
TGCACCTGCTGCTTATGCTA+AGG 0.621082 1_1:+41411556 Msa0022230:CDS
TTTGTGATTGTTGAAATACA+AGG 0.627714 1_1:-41411434 None:intergenic
ATCAGCTTAAAGGTGCACTT+GGG 0.627941 1_1:+41413647 Msa0022230:CDS
CAACCAAGTTAACTGTGGAG+GGG 0.634924 1_1:+41413551 Msa0022230:CDS
ACTTAACACCTCGAATAAGG+AGG 0.635193 1_1:-41415403 None:intergenic
TCTCTCAACCAAGTTAACTG+TGG 0.636429 1_1:+41413546 Msa0022230:CDS
AAAGGATAACGGGTCTTGAG+CGG 0.639206 1_1:+41412745 Msa0022230:CDS
TTTCAACTTCACGCATCACG+TGG 0.646833 1_1:+41411489 Msa0022230:CDS
TTTCAGTTTAAGGATGCCGG+TGG 0.648956 1_1:+41412666 Msa0022230:intron
CATGATCTCTTATCTCGATG+AGG 0.649034 1_1:+41414364 Msa0022230:CDS
AGCGGCTCAATCCAACACCT+CGG 0.670774 1_1:+41412763 Msa0022230:CDS
GGGGCCACTTAGAATGAAGG+AGG 0.670914 1_1:+41413570 Msa0022230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAAAAATTAAAACAAT+GGG - chr1_1:41411674-41411693 None:intergenic 10.0%
!! ATTAACAAAAATTAAAACAA+TGG - chr1_1:41411675-41411694 None:intergenic 10.0%
!!! TTTGTTAATTTATTTAGTTT+TGG + chr1_1:41411686-41411705 Msa0022230:intron 10.0%
!! TTATAATTGAAAAAACTTAT+AGG - chr1_1:41413402-41413421 None:intergenic 10.0%
!!! AATTTTAAACAAAATATGAA+AGG - chr1_1:41413489-41413508 None:intergenic 10.0%
!! ATATAAAATCTGTTAAATAT+TGG + chr1_1:41413810-41413829 Msa0022230:intron 10.0%
!!! ATTTTTCTTTTCATTTTAAT+AGG + chr1_1:41415179-41415198 Msa0022230:intron 10.0%
!!! TTTTTTTTTTATTTCACTAT+TGG - chr1_1:41415577-41415596 None:intergenic 10.0%
!! TAACAAAAATTAAAACAATG+GGG - chr1_1:41411673-41411692 None:intergenic 15.0%
!!! ATAATTGATTTTGATATGTT+TGG + chr1_1:41411786-41411805 Msa0022230:intron 15.0%
!!! AAACACATTATTTTTAAACT+CGG + chr1_1:41413164-41413183 Msa0022230:CDS 15.0%
!!! GTTTTATATATTTCATGAAA+TGG + chr1_1:41413964-41413983 Msa0022230:intron 15.0%
!! AATTTACTTAAGTGTATGTT+TGG + chr1_1:41411724-41411743 Msa0022230:intron 20.0%
!! TATATACATTCATGTAAAAG+CGG - chr1_1:41412021-41412040 None:intergenic 20.0%
!! TGAATAAATTATTGCATGTT+TGG - chr1_1:41412134-41412153 None:intergenic 20.0%
!! ATTGAAACCAATTTATACAA+GGG + chr1_1:41412156-41412175 Msa0022230:intron 20.0%
!! ATTATAACCCTTGTATAAAT+TGG - chr1_1:41412166-41412185 None:intergenic 20.0%
!! TGATTAAATTATTGCATGTT+TGG - chr1_1:41412252-41412271 None:intergenic 20.0%
!! ATTGAAACCAATTTATACAA+GGG + chr1_1:41412156-41412175 Msa0022230:intron 20.0%
!! ATTATAACCCTTGTATAAAT+TGG - chr1_1:41412166-41412185 None:intergenic 20.0%
!!! TTTAGCTAATTTGTCAAAAA+TGG + chr1_1:41413104-41413123 Msa0022230:CDS 20.0%
!! GTTTAAAAATAATGTGTTTG+CGG - chr1_1:41413163-41413182 None:intergenic 20.0%
!!! CTCTTTTACATAATGATTTT+CGG + chr1_1:41413257-41413276 Msa0022230:intron 20.0%
!!! TGAAATAATTTTACTTTCTG+TGG - chr1_1:41413296-41413315 None:intergenic 20.0%
!! AAATATGTCATAACAAGAAA+GGG - chr1_1:41413319-41413338 None:intergenic 20.0%
!!! TAAGAAATAATGTACACTTT+TGG + chr1_1:41414175-41414194 Msa0022230:intron 20.0%
!!! TTTTCAACAACTTCAAAATA+TGG + chr1_1:41414768-41414787 Msa0022230:intron 20.0%
!!! TTCAAATTGATTTTAGTAAG+TGG - chr1_1:41414950-41414969 None:intergenic 20.0%
!!! CGGCAAATATATAATTTTAT+TGG - chr1_1:41415052-41415071 None:intergenic 20.0%
!! GAAAAAAATTGAAAAGCAAT+AGG + chr1_1:41415141-41415160 Msa0022230:intron 20.0%
!! GAGATAATTATAGGTAAAAA+TGG - chr1_1:41415217-41415236 None:intergenic 20.0%
!!! AAATATGGTTTTGTAAGAAA+TGG - chr1_1:41415489-41415508 None:intergenic 20.0%
!! TGATACTAAAACATGAAATA+TGG - chr1_1:41415504-41415523 None:intergenic 20.0%
! TTTGTGATTGTTGAAATACA+AGG - chr1_1:41411437-41411456 None:intergenic 25.0%
! ATATACATTCATGTAAAAGC+GGG - chr1_1:41412020-41412039 None:intergenic 25.0%
!! CTTGTATAAATTGGTTTCAA+TGG - chr1_1:41412157-41412176 None:intergenic 25.0%
! CATTGAAACCAATTTATACA+AGG + chr1_1:41412155-41412174 Msa0022230:intron 25.0%
!! CTTGTATAAATTGGTTTCAA+TGG - chr1_1:41412157-41412176 None:intergenic 25.0%
! CATTGAAACCAATTTATACA+AGG + chr1_1:41412155-41412174 Msa0022230:intron 25.0%
! AATAACAGTTACAAGTAATG+AGG + chr1_1:41412322-41412341 Msa0022230:intron 25.0%
! ATTGTGATATGATAGCTAAA+AGG + chr1_1:41412346-41412365 Msa0022230:intron 25.0%
!!! AACTTCGTTTTATTCTTGTT+GGG - chr1_1:41412566-41412585 None:intergenic 25.0%
! AAAGAATTGATGTGAATGAA+AGG + chr1_1:41412727-41412746 Msa0022230:CDS 25.0%
! TTATTCAGAAAGCTTAGAAA+TGG - chr1_1:41412815-41412834 None:intergenic 25.0%
! TGAGATCAAGCTAAATTTAA+GGG - chr1_1:41413027-41413046 None:intergenic 25.0%
! AAAAATGGATGTCTTTATCA+AGG + chr1_1:41413119-41413138 Msa0022230:CDS 25.0%
! CGAAAATCATTATGTAAAAG+AGG - chr1_1:41413259-41413278 None:intergenic 25.0%
! CAAATATGTCATAACAAGAA+AGG - chr1_1:41413320-41413339 None:intergenic 25.0%
! ATTGAAAAAACTTATAGGCA+TGG - chr1_1:41413397-41413416 None:intergenic 25.0%
! AACAACTTCAAAATATGGAA+GGG + chr1_1:41414773-41414792 Msa0022230:intron 25.0%
! ATAAATTTAGGAGGAAATCT+AGG - chr1_1:41414984-41415003 None:intergenic 25.0%
! TTTCATCCAGCTATAAATTT+AGG - chr1_1:41414996-41415015 None:intergenic 25.0%
!! CCATGATTTGAGATAATTAT+AGG - chr1_1:41415226-41415245 None:intergenic 25.0%
! CCTATAATTATCTCAAATCA+TGG + chr1_1:41415223-41415242 Msa0022230:intron 25.0%
! TAATATCTGAATGATTATGC+TGG + chr1_1:41415246-41415265 Msa0022230:intron 25.0%
! GAAACTTCTATATTCACATA+GGG - chr1_1:41415451-41415470 None:intergenic 25.0%
! TGAAACTTCTATATTCACAT+AGG - chr1_1:41415452-41415471 None:intergenic 25.0%
!! TTTTAGTATCACAACAAAAG+TGG + chr1_1:41415513-41415532 Msa0022230:three_prime_UTR 25.0%
!! AAAGTGTTGTTGTTCAACTT+AGG - chr1_1:41411346-41411365 None:intergenic 30.0%
! AAATTGGTTTCACTTCAACA+TGG - chr1_1:41411378-41411397 None:intergenic 30.0%
! GAAGTGAAACCAATTTTCAA+TGG + chr1_1:41411382-41411401 Msa0022230:exon 30.0%
!!! GCTTCGTTTTTTTGGATTAT+TGG + chr1_1:41411643-41411662 Msa0022230:intron 30.0%
!! ATTTTGATGAACTATGAGTG+TGG + chr1_1:41411838-41411857 Msa0022230:intron 30.0%
CGAGTTAGAATCAGTTATAA+AGG - chr1_1:41411907-41411926 None:intergenic 30.0%
ACATTCTACTCACTTTCAAT+CGG + chr1_1:41412056-41412075 Msa0022230:intron 30.0%
GAACTAACTACACAAATTGT+TGG + chr1_1:41412368-41412387 Msa0022230:intron 30.0%
!! ACTTCGTTTTATTCTTGTTG+GGG - chr1_1:41412565-41412584 None:intergenic 30.0%
!! CAACTTCGTTTTATTCTTGT+TGG - chr1_1:41412567-41412586 None:intergenic 30.0%
AGTATATTTGAGTACAAGCT+TGG - chr1_1:41412630-41412649 None:intergenic 30.0%
GTACTCAAATATACTTACTC+TGG + chr1_1:41412635-41412654 Msa0022230:intron 30.0%
TGATGTGAATGAAAGGATAA+CGG + chr1_1:41412734-41412753 Msa0022230:CDS 30.0%
!! TTTTTAGTCTCTTACGTTGT+GGG - chr1_1:41412789-41412808 None:intergenic 30.0%
AGCTTTCTGAATAAGATGTA+AGG + chr1_1:41412821-41412840 Msa0022230:intron 30.0%
GCTTTCTGAATAAGATGTAA+GGG + chr1_1:41412822-41412841 Msa0022230:intron 30.0%
TTCATACTCTTTATTGCTAC+AGG + chr1_1:41412850-41412869 Msa0022230:intron 30.0%
AACAATCCGAAGAAAAACTT+CGG - chr1_1:41412993-41413012 None:intergenic 30.0%
GTGAGATCAAGCTAAATTTA+AGG - chr1_1:41413028-41413047 None:intergenic 30.0%
CTGCAAATATATAAAGCACA+AGG - chr1_1:41413069-41413088 None:intergenic 30.0%
CTTGTGCTTTATATATTTGC+AGG + chr1_1:41413067-41413086 Msa0022230:intron 30.0%
GACAAATTAGCTAAACTTGA+AGG - chr1_1:41413099-41413118 None:intergenic 30.0%
CATAACTACCTGTTAAAACA+AGG - chr1_1:41413355-41413374 None:intergenic 30.0%
!!! CTTGTTTTAACAGGTAGTTA+TGG + chr1_1:41413353-41413372 Msa0022230:intron 30.0%
! TTAAGTCAGAACATTTTCAG+AGG - chr1_1:41413776-41413795 None:intergenic 30.0%
!! TGAAATGGATTTTCTCTAGT+TGG + chr1_1:41413979-41413998 Msa0022230:intron 30.0%
AATTCTCATACACATATACG+TGG + chr1_1:41414035-41414054 Msa0022230:intron 30.0%
ATTCTCATACACATATACGT+GGG + chr1_1:41414036-41414055 Msa0022230:intron 30.0%
!!! CCACAAGTTACTTTCTTTTT+TGG - chr1_1:41414068-41414087 None:intergenic 30.0%
CCAAAAAAGAAAGTAACTTG+TGG + chr1_1:41414065-41414084 Msa0022230:intron 30.0%
ATATTTAGCAATTTCAAGCC+AGG - chr1_1:41414096-41414115 None:intergenic 30.0%
TGTAAATGTCTACCAACATA+AGG - chr1_1:41414138-41414157 None:intergenic 30.0%
! TGATGTCATTTCATGTTTGA+AGG + chr1_1:41414320-41414339 Msa0022230:intron 30.0%
ATATGCATTGTAATCTACGA+AGG - chr1_1:41414448-41414467 None:intergenic 30.0%
TAACTGTTGCATTATCAGAT+TGG + chr1_1:41414544-41414563 Msa0022230:intron 30.0%
!! GTAAGATTTTCTGGAAATCA+AGG - chr1_1:41414642-41414661 None:intergenic 30.0%
CAACAACTTCAAAATATGGA+AGG + chr1_1:41414772-41414791 Msa0022230:intron 30.0%
ATGTGAGAATGATAGAATTG+AGG - chr1_1:41414883-41414902 None:intergenic 30.0%
TTTCCTCCTAAATTTATAGC+TGG + chr1_1:41414987-41415006 Msa0022230:intron 30.0%
AGCATGTATAAGAGAATTGA+GGG - chr1_1:41415092-41415111 None:intergenic 30.0%
TAGCATGTATAAGAGAATTG+AGG - chr1_1:41415093-41415112 None:intergenic 30.0%
TCAATTCTCTTATACATGCT+AGG + chr1_1:41415092-41415111 Msa0022230:intron 30.0%
! ATATTTTACCTCCTTATTCG+AGG + chr1_1:41415395-41415414 Msa0022230:three_prime_UTR 30.0%
TTTACTTAACACCTCGAATA+AGG - chr1_1:41415409-41415428 None:intergenic 30.0%
! CATAGGGAATTTAAAGTAAC+AGG - chr1_1:41415435-41415454 None:intergenic 30.0%
CAGAAACAGCCATTGAAAAT+TGG - chr1_1:41411394-41411413 None:intergenic 35.0%
CAATTCCTTCATCTTCTTCA+TGG + chr1_1:41411462-41411481 Msa0022230:CDS 35.0%
ACTTTCCATGAAGAAGATGA+AGG - chr1_1:41411470-41411489 None:intergenic 35.0%
CCAAAAAAACGAAGCAGAAA+AGG - chr1_1:41411638-41411657 None:intergenic 35.0%
!!! CCTTTTCTGCTTCGTTTTTT+TGG + chr1_1:41411635-41411654 Msa0022230:intron 35.0%
!! TTTGGTTCTACTCTAAGATG+AGG + chr1_1:41411742-41411761 Msa0022230:intron 35.0%
! TGAGGCAAAATTGATTTCAG+AGG + chr1_1:41411760-41411779 Msa0022230:intron 35.0%
CAATTGTAGAAGCAAAACGA+CGG - chr1_1:41411971-41411990 None:intergenic 35.0%
! ATTGACTTAGAACGAGCTAA+AGG + chr1_1:41412416-41412435 Msa0022230:intron 35.0%
!! CCTTAAAGCATCGAGTTTAT+GGG - chr1_1:41412462-41412481 None:intergenic 35.0%
!! ACCTTAAAGCATCGAGTTTA+TGG - chr1_1:41412463-41412482 None:intergenic 35.0%
!!! AACTCGATGCTTTAAGGTTT+TGG + chr1_1:41412465-41412484 Msa0022230:intron 35.0%
!!! ACTCGATGCTTTAAGGTTTT+GGG + chr1_1:41412466-41412485 Msa0022230:intron 35.0%
AACAACAATCGAGTAAAGAC+CGG - chr1_1:41412524-41412543 None:intergenic 35.0%
! GGAGACATCTTTTCAGTTTA+AGG + chr1_1:41412656-41412675 Msa0022230:intron 35.0%
! TCTTTTCAGTTTAAGGATGC+CGG + chr1_1:41412663-41412682 Msa0022230:intron 35.0%
GATGTGAATGAAAGGATAAC+GGG + chr1_1:41412735-41412754 Msa0022230:CDS 35.0%
!!! GTTTTTAGTCTCTTACGTTG+TGG - chr1_1:41412790-41412809 None:intergenic 35.0%
!! AAGGAAGCATTGTAACTCAA+AGG - chr1_1:41413050-41413069 None:intergenic 35.0%
ATGGATGTCTTTATCAAGGA+TGG + chr1_1:41413123-41413142 Msa0022230:CDS 35.0%
AACTACCTGTTAAAACAAGG+TGG - chr1_1:41413352-41413371 None:intergenic 35.0%
AGGTACAACAAACTCTTTCT+AGG - chr1_1:41413469-41413488 None:intergenic 35.0%
GAGGTGAATATAGAAATCAG+TGG - chr1_1:41413757-41413776 None:intergenic 35.0%
ATGTTCTGACTTAACTGTTC+TGG + chr1_1:41413782-41413801 Msa0022230:intron 35.0%
ACTATGCGCTGCTAATATTA+GGG + chr1_1:41413837-41413856 Msa0022230:intron 35.0%
CACGAAACAACAGAATAAAC+AGG - chr1_1:41413863-41413882 None:intergenic 35.0%
CAGTAAGAAATGCCTTATGT+TGG + chr1_1:41414123-41414142 Msa0022230:intron 35.0%
! TGTCATTTCATGTTTGAAGG+TGG + chr1_1:41414323-41414342 Msa0022230:intron 35.0%
TGCATTATCAGATTGGAATG+TGG + chr1_1:41414551-41414570 Msa0022230:intron 35.0%
! CATGACAGTGTAAGATTTTC+TGG - chr1_1:41414651-41414670 None:intergenic 35.0%
TCTTACACTGTCATGTGTAA+AGG + chr1_1:41414656-41414675 Msa0022230:intron 35.0%
CATCCAGCTATAAATTTAGG+AGG - chr1_1:41414993-41415012 None:intergenic 35.0%
TATAGCTGGATGAAAGTTCT+AGG + chr1_1:41415001-41415020 Msa0022230:intron 35.0%
AAGAGAATTGAGGGAAACAA+CGG - chr1_1:41415083-41415102 None:intergenic 35.0%
ATGCTAGGTTTGAATGACAT+GGG + chr1_1:41415107-41415126 Msa0022230:intron 35.0%
!! TGGTTCTGATGCAGATAATA+AGG + chr1_1:41415266-41415285 Msa0022230:intron 35.0%
AGATAATAAGGAACACAGCT+GGG + chr1_1:41415278-41415297 Msa0022230:intron 35.0%
AAGTCCAGATTATGAAAGCT+AGG + chr1_1:41415354-41415373 Msa0022230:CDS 35.0%
! AACACCTAGCTTTCATAATC+TGG - chr1_1:41415361-41415380 None:intergenic 35.0%
ATGAAAGCTAGGTGTTTGTA+TGG + chr1_1:41415365-41415384 Msa0022230:exon 35.0%
TCACTTCAACATGGAATGGA+AGG - chr1_1:41411369-41411388 None:intergenic 40.0%
GGTTTCACTTCAACATGGAA+TGG - chr1_1:41411373-41411392 None:intergenic 40.0%
! GCTATGGTTCAAGTTCAAAC+TGG + chr1_1:41411533-41411552 Msa0022230:CDS 40.0%
ATTTCCTTAGCATAAGCAGC+AGG - chr1_1:41411563-41411582 None:intergenic 40.0%
! TGCTGCTTATGCTAAGGAAA+TGG + chr1_1:41411562-41411581 Msa0022230:CDS 40.0%
GAAGCGATTCTTTAGCAGAA+AGG - chr1_1:41411592-41411611 None:intergenic 40.0%
GAAGCAGAAAAGGAAATGAG+TGG - chr1_1:41411628-41411647 None:intergenic 40.0%
ATGAGTGTGGTTAAGCATCA+AGG + chr1_1:41411851-41411870 Msa0022230:intron 40.0%
ACTTAGAACGAGCTAAAGGA+AGG + chr1_1:41412420-41412439 Msa0022230:intron 40.0%
CCCATAAACTCGATGCTTTA+AGG + chr1_1:41412459-41412478 Msa0022230:intron 40.0%
!!! GTTTTGAGAGCTTAGTCTCT+GGG + chr1_1:41412688-41412707 Msa0022230:CDS 40.0%
! TTCCATCGACCTTCTAGAAA+GGG - chr1_1:41412879-41412898 None:intergenic 40.0%
! GTCAGTCCGAAGTTTTTCTT+CGG + chr1_1:41412984-41413003 Msa0022230:intron 40.0%
!!! AGTGTCCACCTTGTTTTAAC+AGG + chr1_1:41413344-41413363 Msa0022230:intron 40.0%
TCTCTCAACCAAGTTAACTG+TGG + chr1_1:41413546-41413565 Msa0022230:CDS 40.0%
TCAACCAAGTTAACTGTGGA+GGG + chr1_1:41413550-41413569 Msa0022230:CDS 40.0%
TACTCCTCCTTCATTCTAAG+TGG - chr1_1:41413577-41413596 None:intergenic 40.0%
! TAGAATGAAGGAGGAGTATG+TGG + chr1_1:41413579-41413598 Msa0022230:CDS 40.0%
TATTGTGTCACCAACAGTCT+TGG + chr1_1:41413609-41413628 Msa0022230:CDS 40.0%
! AGAGTACCAGATCAGCTTAA+AGG + chr1_1:41413637-41413656 Msa0022230:CDS 40.0%
! ATCAGCTTAAAGGTGCACTT+GGG + chr1_1:41413647-41413666 Msa0022230:CDS 40.0%
! TAGTGGAACTTTTAGCCCAT+CGG - chr1_1:41413725-41413744 None:intergenic 40.0%
ATCAGTGGTAGCTTACTTAG+TGG - chr1_1:41413742-41413761 None:intergenic 40.0%
CACTATGCGCTGCTAATATT+AGG + chr1_1:41413836-41413855 Msa0022230:intron 40.0%
AAATATGTGCGCACAAAGAC+AGG + chr1_1:41414225-41414244 Msa0022230:intron 40.0%
CATGATCTCTTATCTCGATG+AGG + chr1_1:41414364-41414383 Msa0022230:CDS 40.0%
TGCACTAAGAAACGCATGTA+TGG + chr1_1:41414500-41414519 Msa0022230:intron 40.0%
! TATGGTTGCAACTGGTGTTT+TGG + chr1_1:41414518-41414537 Msa0022230:intron 40.0%
! GTGATGTACGTTACACCTTT+TGG + chr1_1:41414600-41414619 Msa0022230:intron 40.0%
! TTACACCTTTTGGTCATGCT+GGG + chr1_1:41414610-41414629 Msa0022230:intron 40.0%
CAGAAAGTGAAACTACTCAG+AGG - chr1_1:41414741-41414760 None:intergenic 40.0%
CTCTGAGTAGTTTCACTTTC+TGG + chr1_1:41414739-41414758 Msa0022230:intron 40.0%
! TTTTCCTCACTGTCACAGTT+TGG + chr1_1:41414800-41414819 Msa0022230:intron 40.0%
TGAGAATGAAAAATCGCCCA+GGG + chr1_1:41414834-41414853 Msa0022230:intron 40.0%
AAAATCGCCCAGGGTTTAAT+AGG + chr1_1:41414843-41414862 Msa0022230:intron 40.0%
TTCGAGACCTATTAAACCCT+GGG - chr1_1:41414853-41414872 None:intergenic 40.0%
AGGGTTTAATAGGTCTCGAA+GGG + chr1_1:41414853-41414872 Msa0022230:intron 40.0%
TTTAATAGGTCTCGAAGGGA+AGG + chr1_1:41414857-41414876 Msa0022230:intron 40.0%
! GGGAAACAACGGATTTACAT+CGG - chr1_1:41415072-41415091 None:intergenic 40.0%
CATGCTAGGTTTGAATGACA+TGG + chr1_1:41415106-41415125 Msa0022230:intron 40.0%
GTTTGAATGACATGGGAACA+TGG + chr1_1:41415114-41415133 Msa0022230:intron 40.0%
AATGACATGGGAACATGGAA+AGG + chr1_1:41415119-41415138 Msa0022230:intron 40.0%
CAGATAATAAGGAACACAGC+TGG + chr1_1:41415277-41415296 Msa0022230:intron 40.0%
TCGAGTCTCGTTAAAACTTC+TGG - chr1_1:41415307-41415326 None:intergenic 40.0%
ACTTAACACCTCGAATAAGG+AGG - chr1_1:41415406-41415425 None:intergenic 40.0%
GTTGTGTTGTGTGTGTGTGT+GGG - chr1_1:41411318-41411337 None:intergenic 45.0%
TGTTGTGTTGTGTGTGTGTG+TGG - chr1_1:41411319-41411338 None:intergenic 45.0%
TTTCAACTTCACGCATCACG+TGG + chr1_1:41411489-41411508 Msa0022230:CDS 45.0%
ACATTCATGTAAAAGCGGGC+TGG - chr1_1:41412016-41412035 None:intergenic 45.0%
!!! CGATGCTTTAAGGTTTTGGG+AGG + chr1_1:41412469-41412488 Msa0022230:intron 45.0%
! TTGTTGTTCCTAATGCTCCC+TGG + chr1_1:41412536-41412555 Msa0022230:intron 45.0%
TATTCTTGTTGGGGAGTCCA+GGG - chr1_1:41412556-41412575 None:intergenic 45.0%
TTATTCTTGTTGGGGAGTCC+AGG - chr1_1:41412557-41412576 None:intergenic 45.0%
TTTCAGTTTAAGGATGCCGG+TGG + chr1_1:41412666-41412685 Msa0022230:intron 45.0%
GACTAAGCTCTCAAAACCAC+CGG - chr1_1:41412685-41412704 None:intergenic 45.0%
!!! GGTTTTGAGAGCTTAGTCTC+TGG + chr1_1:41412687-41412706 Msa0022230:CDS 45.0%
!! AAAGGATAACGGGTCTTGAG+CGG + chr1_1:41412745-41412764 Msa0022230:CDS 45.0%
TACAGGTCACCCTTTCTAGA+AGG + chr1_1:41412867-41412886 Msa0022230:intron 45.0%
! GTTCCATCGACCTTCTAGAA+AGG - chr1_1:41412880-41412899 None:intergenic 45.0%
AAGGTCGATGGAACTTTGAG+TGG + chr1_1:41412886-41412905 Msa0022230:CDS 45.0%
CGATGGAACTTTGAGTGGTT+TGG + chr1_1:41412891-41412910 Msa0022230:CDS 45.0%
!! AACTTTGAGTGGTTTGGTCC+CGG + chr1_1:41412897-41412916 Msa0022230:CDS 45.0%
CTCAACCAAGTTAACTGTGG+AGG + chr1_1:41413549-41413568 Msa0022230:CDS 45.0%
CAACCAAGTTAACTGTGGAG+GGG + chr1_1:41413551-41413570 Msa0022230:CDS 45.0%
! ATGAAGGAGGAGTATGTGGA+AGG + chr1_1:41413583-41413602 Msa0022230:CDS 45.0%
! TGAAGGAGGAGTATGTGGAA+GGG + chr1_1:41413584-41413603 Msa0022230:CDS 45.0%
ACTCTGTCTTCCAAGACTGT+TGG - chr1_1:41413622-41413641 None:intergenic 45.0%
AGTGCACCTTTAAGCTGATC+TGG - chr1_1:41413646-41413665 None:intergenic 45.0%
! GATCAGCTTAAAGGTGCACT+TGG + chr1_1:41413646-41413665 Msa0022230:CDS 45.0%
! AGAGCATCACGTAAAGGTAC+GGG - chr1_1:41413700-41413719 None:intergenic 45.0%
!! GAGAGCATCACGTAAAGGTA+CGG - chr1_1:41413701-41413720 None:intergenic 45.0%
! AAGTAACTTGTGGCTTAGCC+TGG + chr1_1:41414075-41414094 Msa0022230:intron 45.0%
AACGCATGTATGGTTGCAAC+TGG + chr1_1:41414510-41414529 Msa0022230:intron 45.0%
! GTTACACCTTTTGGTCATGC+TGG + chr1_1:41414609-41414628 Msa0022230:intron 45.0%
CATAACCCAGCATGACCAAA+AGG - chr1_1:41414618-41414637 None:intergenic 45.0%
TCATCCAAACTGTGACAGTG+AGG - chr1_1:41414807-41414826 None:intergenic 45.0%
CTGAGAATGAAAAATCGCCC+AGG + chr1_1:41414833-41414852 Msa0022230:intron 45.0%
CTTCGAGACCTATTAAACCC+TGG - chr1_1:41414854-41414873 None:intergenic 45.0%
CAGGGTTTAATAGGTCTCGA+AGG + chr1_1:41414852-41414871 Msa0022230:intron 45.0%
!! AGCTGGATGAAAGTTCTAGG+TGG + chr1_1:41415004-41415023 Msa0022230:intron 45.0%
ATCTGGACTTGATTCTCCCA+GGG - chr1_1:41415344-41415363 None:intergenic 45.0%
AATCTGGACTTGATTCTCCC+AGG - chr1_1:41415345-41415364 None:intergenic 45.0%
GCGTGGAATTTGCAGAGCTA+TGG + chr1_1:41411517-41411536 Msa0022230:CDS 50.0%
! TGCACCTGCTGCTTATGCTA+AGG + chr1_1:41411556-41411575 Msa0022230:CDS 50.0%
!! TCATGTAAAAGCGGGCTGGA+TGG - chr1_1:41412012-41412031 None:intergenic 50.0%
!!! AAGGTTTTGGGAGGAGCTGT+TGG + chr1_1:41412478-41412497 Msa0022230:intron 50.0%
!!! AGGTTTTGGGAGGAGCTGTT+GGG + chr1_1:41412479-41412498 Msa0022230:intron 50.0%
! TCCAAGTCTCTTGGTGGTTC+CGG + chr1_1:41412502-41412521 Msa0022230:intron 50.0%
! CACCCTTTCTAGAAGGTCGA+TGG + chr1_1:41412874-41412893 Msa0022230:CDS 50.0%
CTTGATTCTCCCAGGGATGA+CGG - chr1_1:41415337-41415356 None:intergenic 50.0%
GCTGTTGGGTCCAAGTCTCT+TGG + chr1_1:41412493-41412512 Msa0022230:intron 55.0%
GTTGGGTCCAAGTCTCTTGG+TGG + chr1_1:41412496-41412515 Msa0022230:intron 55.0%
ACCGGAACCACCAAGAGACT+TGG - chr1_1:41412506-41412525 None:intergenic 55.0%
AGCGGCTCAATCCAACACCT+CGG + chr1_1:41412763-41412782 Msa0022230:CDS 55.0%
GCAAACAACCCAGGAGATCC+GGG - chr1_1:41412918-41412937 None:intergenic 55.0%
CGCAAACAACCCAGGAGATC+CGG - chr1_1:41412919-41412938 None:intergenic 55.0%
CGGATCTCCTGGGTTGTTTG+CGG + chr1_1:41412917-41412936 Msa0022230:CDS 55.0%
ATCCTAGCCGCAAACAACCC+AGG - chr1_1:41412927-41412946 None:intergenic 55.0%
TGGCCCCTCCACAGTTAACT+TGG - chr1_1:41413557-41413576 None:intergenic 55.0%
GGAGGGGCCACTTAGAATGA+AGG + chr1_1:41413567-41413586 Msa0022230:CDS 55.0%
GGGGCCACTTAGAATGAAGG+AGG + chr1_1:41413570-41413589 Msa0022230:CDS 55.0%
! GCTTAAAGGTGCACTTGGGC+AGG + chr1_1:41413651-41413670 Msa0022230:CDS 55.0%
!! TCGGCGAGAGCATCACGTAA+AGG - chr1_1:41413706-41413725 None:intergenic 55.0%
TTACGTGATGCTCTCGCCGA+TGG + chr1_1:41413706-41413725 Msa0022230:CDS 55.0%
TACGTGATGCTCTCGCCGAT+GGG + chr1_1:41413707-41413726 Msa0022230:CDS 55.0%
!! TGGGGAGTCCAGGGAGCATT+AGG - chr1_1:41412547-41412566 None:intergenic 60.0%
TACGTTGTGGGCCGAGGTGT+TGG - chr1_1:41412777-41412796 None:intergenic 60.0%
GTCTCTTACGTTGTGGGCCG+AGG - chr1_1:41412783-41412802 None:intergenic 60.0%
!! TGGTTTGGTCCCGGATCTCC+TGG + chr1_1:41412906-41412925 Msa0022230:CDS 60.0%
! GGTTTGGTCCCGGATCTCCT+GGG + chr1_1:41412907-41412926 Msa0022230:CDS 60.0%
CTCCTGGGTTGTTTGCGGCT+AGG + chr1_1:41412922-41412941 Msa0022230:CDS 60.0%
GATGCATCGCCGTCATCCCT+GGG + chr1_1:41415325-41415344 Msa0022230:CDS 60.0%
CGCATCACGTGGCAGAAGCG+TGG + chr1_1:41411500-41411519 Msa0022230:CDS 65.0%
CGATGCATCGCCGTCATCCC+TGG + chr1_1:41415324-41415343 Msa0022230:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 41411293 41415675 41411293 ID=Msa0022230;Name=Msa0022230
chr1_1 mRNA 41411293 41415675 41411293 ID=Msa0022230-mRNA-1;Parent=Msa0022230;Name=Msa0022230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=108|1|1|1|1|1|7|300|295
chr1_1 exon 41411293 41411619 41411293 ID=Msa0022230-mRNA-1:exon:12284;Parent=Msa0022230-mRNA-1
chr1_1 exon 41412672 41412793 41412672 ID=Msa0022230-mRNA-1:exon:12285;Parent=Msa0022230-mRNA-1
chr1_1 exon 41412872 41412955 41412872 ID=Msa0022230-mRNA-1:exon:12286;Parent=Msa0022230-mRNA-1
chr1_1 exon 41413089 41413185 41413089 ID=Msa0022230-mRNA-1:exon:12287;Parent=Msa0022230-mRNA-1
chr1_1 exon 41413529 41413745 41413529 ID=Msa0022230-mRNA-1:exon:12288;Parent=Msa0022230-mRNA-1
chr1_1 exon 41414342 41414394 41414342 ID=Msa0022230-mRNA-1:exon:12289;Parent=Msa0022230-mRNA-1
chr1_1 exon 41415280 41415675 41415280 ID=Msa0022230-mRNA-1:exon:12290;Parent=Msa0022230-mRNA-1
chr1_1 five_prime_UTR 41411293 41411400 41411293 ID=Msa0022230-mRNA-1:five_prime_utr;Parent=Msa0022230-mRNA-1
chr1_1 CDS 41411401 41411619 41411401 ID=Msa0022230-mRNA-1:cds;Parent=Msa0022230-mRNA-1
chr1_1 CDS 41412672 41412793 41412672 ID=Msa0022230-mRNA-1:cds;Parent=Msa0022230-mRNA-1
chr1_1 CDS 41412872 41412955 41412872 ID=Msa0022230-mRNA-1:cds;Parent=Msa0022230-mRNA-1
chr1_1 CDS 41413089 41413185 41413089 ID=Msa0022230-mRNA-1:cds;Parent=Msa0022230-mRNA-1
chr1_1 CDS 41413529 41413745 41413529 ID=Msa0022230-mRNA-1:cds;Parent=Msa0022230-mRNA-1
chr1_1 CDS 41414342 41414394 41414342 ID=Msa0022230-mRNA-1:cds;Parent=Msa0022230-mRNA-1
chr1_1 CDS 41415280 41415375 41415280 ID=Msa0022230-mRNA-1:cds;Parent=Msa0022230-mRNA-1
chr1_1 three_prime_UTR 41415376 41415675 41415376 ID=Msa0022230-mRNA-1:three_prime_utr;Parent=Msa0022230-mRNA-1
Gene Sequence

>Msa0022230

ATGGCTGTTTCTGTATCTATTTCTGCTTCTCATCCTTGTATTTCAACAATCACAAATTGTTCAATTCCTTCATCTTCTTCATGGAAAGTTTCAACTTCACGCATCACGTGGCAGAAGCGTGGAATTTGCAGAGCTATGGTTCAAGTTCAAACTGGTGCACCTGCTGCTTATGCTAAGGAAATGGAACGCCTTTCTGCTAAAGAATCGCTTCTTCTTGCTTTTAAGGATGCCGGTGGTTTTGAGAGCTTAGTCTCTGGGAAGACAACTGAATATCAAAGAATTGATGTGAATGAAAGGATAACGGGTCTTGAGCGGCTCAATCCAACACCTCGGCCCACAACGTCACCCTTTCTAGAAGGTCGATGGAACTTTGAGTGGTTTGGTCCCGGATCTCCTGGGTTGTTTGCGGCTAGGATGATATTTGAGAATTTTCCTTCAAGTTTAGCTAATTTGTCAAAAATGGATGTCTTTATCAAGGATGGAAATGCAAAGATTACCGCAAACACATTATTTTTAAACTCGATAGAAAGCAGAATTATTCTCTCAACCAAGTTAACTGTGGAGGGGCCACTTAGAATGAAGGAGGAGTATGTGGAAGGGATTATTGTGTCACCAACAGTCTTGGAAGACAGAGTACCAGATCAGCTTAAAGGTGCACTTGGGCAGGCAGTTAATGTTTTACAACAGCTTCCCGTACCTTTACGTGATGCTCTCGCCGATGGGCTAAAAGTTCCACTAAGTGGAAGCTTTCAAAGACTCTTCATGATCTCTTATCTCGATGAGGAGATACTTATAATAAGGAACACAGCTGGGATACCAGAAGTTTTAACGAGACTCGATGCATCGCCGTCATCCCTGGGAGAATCAAGTCCAGATTATGAAAGCTAG

Protein sequence

>Msa0022230

MAVSVSISASHPCISTITNCSIPSSSSWKVSTSRITWQKRGICRAMVQVQTGAPAAYAKEMERLSAKESLLLAFKDAGGFESLVSGKTTEYQRIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGPGSPGLFAARMIFENFPSSLANLSKMDVFIKDGNAKITANTLFLNSIESRIILSTKLTVEGPLRMKEEYVEGIIVSPTVLEDRVPDQLKGALGQAVNVLQQLPVPLRDALADGLKVPLSGSFQRLFMISYLDEEILIIRNTAGIPEVLTRLDASPSSLGESSPDYES*