AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0587070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0587070 MtrunA17_Chr4g0003121 94.517 383 21 0 1 383 1 383 0.0 731
Msa0587070 MtrunA17_Chr8g0337611 34.831 267 163 8 113 375 161 420 1.67e-39 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0587070 AT1G52510.1 74.933 371 90 2 14 383 12 380 0.0 582
Msa0587070 AT1G52510.2 80.932 236 45 0 148 383 1 236 9.62e-147 415
Msa0587070 AT4G12830.1 33.514 370 218 13 27 375 17 379 6.89e-42 151

Find 106 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACTAAATTTACAATTTA+AGG 0.020274 4_2:+8567123 None:intergenic
TGTTTATCGGTTACCTTATT+TGG 0.104844 4_2:-8569474 Msa0587070:CDS
AGAAACCTTTATGCTAATTA+AGG 0.223836 4_2:-8566953 Msa0587070:three_prime_UTR
AAATCATCATTCAACCCTTT+TGG 0.239268 4_2:-8573452 Msa0587070:CDS
CTTTCTAGGTTCCCTCTATA+TGG 0.296099 4_2:-8569822 Msa0587070:intron
GATTCCTTCAAGGTCAGTTT+TGG 0.301670 4_2:+8567186 None:intergenic
GGTCCACTGCTTGCCAAATA+AGG 0.311829 4_2:+8569461 None:intergenic
GAAATAGATAATGGAATGTT+TGG 0.321859 4_2:+8566994 None:intergenic
GCAAGCAGTGGACCTGGATT+TGG 0.327621 4_2:-8569452 Msa0587070:intron
GGATTTCTTGTAGGTTCATA+TGG 0.332214 4_2:-8570752 Msa0587070:CDS
ATGGGAGATGAGCTTGTTAA+TGG 0.335320 4_2:+8570671 None:intergenic
AGATGGTTTGTGAGGGAAAC+TGG 0.336712 4_2:-8571630 Msa0587070:intron
CTCCTTAAGGGATTTCTTGT+AGG 0.338401 4_2:-8570761 Msa0587070:intron
GGATGTTTGGAAATAGATAA+TGG 0.339474 4_2:+8566985 None:intergenic
GCGCCTGACTGGATAGGATT+TGG 0.341818 4_2:-8571275 Msa0587070:CDS
TTCTAATAGACTTGGATGTT+TGG 0.343620 4_2:+8566972 None:intergenic
CTCAACCTTAATTAGCATAA+AGG 0.348365 4_2:+8566948 None:intergenic
ATGAAAAGGCTGATGTTTAT+CGG 0.353384 4_2:-8569487 Msa0587070:CDS
TCAAAACAGTTGGCAGATAC+AGG 0.361438 4_2:-8571311 Msa0587070:intron
CAGAAGGATTTGCAACTAAC+AGG 0.371267 4_2:-8568396 Msa0587070:intron
GATAAACTGCTTCAGGTGTT+GGG 0.375461 4_2:-8571105 Msa0587070:CDS
TACGGATCATATATAAAATC+CGG 0.377929 4_2:-8571660 Msa0587070:CDS
TATCTTGCTTGAATTCTTCA+AGG 0.386504 4_2:+8570718 None:intergenic
CACAAACCATCTCAACTTCC+CGG 0.388212 4_2:+8571641 None:intergenic
AATCCCCAAGCAAGCATTAT+CGG 0.390118 4_2:+8567468 None:intergenic
ACAAGCTCATCTCCCATTCC+TGG 0.390715 4_2:-8570665 Msa0587070:CDS
TGAATGGCACTACGGCTTGA+TGG 0.396499 4_2:+8573413 None:intergenic
TGCAAAACAAAGAGCTTCAA+TGG 0.399245 4_2:+8573655 None:intergenic
ATCAAGCTTAAATTGATAGA+AGG 0.411333 4_2:-8567384 Msa0587070:CDS
TCCACTGCTTTGCGCCTGAC+TGG 0.416258 4_2:-8571286 Msa0587070:CDS
TGCATTGGATAAACTGCTTC+AGG 0.418413 4_2:-8571112 Msa0587070:CDS
GCTCAGCAATAATAGCATTC+TGG 0.422752 4_2:+8569787 None:intergenic
TAAGCCGATAATGCTTGCTT+GGG 0.424882 4_2:-8567472 Msa0587070:CDS
GGATAAACTGCTTCAGGTGT+TGG 0.424987 4_2:-8571106 Msa0587070:CDS
CCTGCTGAAGCTGGCAATGT+TGG 0.436380 4_2:-8573377 Msa0587070:CDS
GAAATAGCAAGGTTTAGTGT+TGG 0.443464 4_2:+8573605 None:intergenic
ACAACCAAAACTGACCTTGA+AGG 0.451699 4_2:-8567190 Msa0587070:three_prime_UTR
CAAGACAAGGGCAAGGAATA+CGG 0.457995 4_2:-8571678 Msa0587070:CDS
CTGGACTATTTCAGCAGCTA+AGG 0.459053 4_2:-8570646 Msa0587070:intron
AAAGCATCAACAACTTTCTC+AGG 0.462814 4_2:+8567234 None:intergenic
ACCTGAACAACTAGGTAAAA+CGG 0.462960 4_2:+8571072 None:intergenic
GTCATATGCCACAAGAAGAT+TGG 0.472192 4_2:-8567356 Msa0587070:intron
ATAGCAGAGGAGTTTCAAAA+AGG 0.478884 4_2:-8567420 Msa0587070:CDS
ATAAGCCGATAATGCTTGCT+TGG 0.479957 4_2:-8567473 Msa0587070:CDS
TTATCAGTAACAAATCCAAA+AGG 0.481278 4_2:+8573437 None:intergenic
CCAACATTGCCAGCTTCAGC+AGG 0.482936 4_2:+8573377 None:intergenic
CATTGAAATTCACCATATAG+AGG 0.484860 4_2:+8569810 None:intergenic
ATAAACTGCTTCAGGTGTTG+GGG 0.485560 4_2:-8571104 Msa0587070:CDS
TCTGAAAATCCTGCTGAAGC+TGG 0.491648 4_2:-8573386 Msa0587070:CDS
TGCTGAAATAGTCCAGGAAT+GGG 0.492694 4_2:+8570653 None:intergenic
TATTTGGCAAGCAGTGGACC+TGG 0.494712 4_2:-8569458 Msa0587070:CDS
TTAAAAGGAACAAACAACAT+AGG 0.495739 4_2:+8567089 None:intergenic
ATGTCCTTACTCAAATCAAA+AGG 0.497107 4_2:-8567162 Msa0587070:three_prime_UTR
GCTTGAATTCTTCAAGGCCC+AGG 0.497952 4_2:+8570724 None:intergenic
GTGTAATTAAAACCGTATCC+TGG 0.502859 4_2:+8571233 None:intergenic
CTGCTGAAATAGTCCAGGAA+TGG 0.505004 4_2:+8570652 None:intergenic
TGCTTTGCGCCTGACTGGAT+AGG 0.508011 4_2:-8571281 Msa0587070:CDS
GGAACAATTGTATTCCTTCA+CGG 0.510150 4_2:-8571492 Msa0587070:CDS
TTCAGTGACAAGCCACAGCC+AGG 0.513906 4_2:-8571251 Msa0587070:CDS
CATGAACCGCTAGTTATGTT+CGG 0.514713 4_2:-8573705 Msa0587070:five_prime_UTR
TAGGTTCATATGGACTGACC+TGG 0.515329 4_2:-8570742 Msa0587070:CDS
TAAGGACATGGATTCCTTCA+AGG 0.516983 4_2:+8567176 None:intergenic
ACTGAAAGTACCGTTGAAGT+TGG 0.517505 4_2:+8568426 None:intergenic
GCTGAGCGGTTTATTGAAAG+AGG 0.524103 4_2:-8569771 Msa0587070:CDS
CTTTAGATACCTGAACAACT+AGG 0.528906 4_2:+8571064 None:intergenic
AAACCAAATCCTATCCAGTC+AGG 0.531111 4_2:+8571272 None:intergenic
AAAGGAGTTCCATGATGCAT+TGG 0.534788 4_2:-8571127 Msa0587070:CDS
TAGTAGTTGAAGAAATAGCA+AGG 0.535867 4_2:+8573594 None:intergenic
TCCAGTCAGGCGCAAAGCAG+TGG 0.540824 4_2:+8571285 None:intergenic
CTTAGCTGCTGAAATAGTCC+AGG 0.545953 4_2:+8570647 None:intergenic
TACTCTCACCAATCTTCTTG+TGG 0.549372 4_2:+8567348 None:intergenic
TTACCTTATTTGGCAAGCAG+TGG 0.551775 4_2:-8569464 Msa0587070:CDS
TATCAGTAACAAATCCAAAA+GGG 0.554155 4_2:+8573438 None:intergenic
CAGACAATTGAATGGCACTA+CGG 0.555154 4_2:+8573405 None:intergenic
CTTAAATTGATAGAAGGAGC+TGG 0.557191 4_2:-8567378 Msa0587070:CDS
TAAAATCCGGGAAGTTGAGA+TGG 0.559568 4_2:-8571647 Msa0587070:CDS
GCAGTTTATCCAATGCATCA+TGG 0.559609 4_2:+8571118 None:intergenic
GACAAGCCACAGCCAGGATA+CGG 0.563905 4_2:-8571245 Msa0587070:CDS
ATAAAGGTTTCTAATAGACT+TGG 0.566263 4_2:+8566964 None:intergenic
TTATGCTAATTAAGGTTGAG+AGG 0.568594 4_2:-8566945 Msa0587070:three_prime_UTR
CTACCGAGTTGTTATGTCTG+AGG 0.568732 4_2:-8571448 Msa0587070:intron
ACGGATCATATATAAAATCC+GGG 0.569011 4_2:-8571659 Msa0587070:CDS
ATTGCGTTGGCGCTCCGTGA+AGG 0.569256 4_2:+8571478 None:intergenic
TTATGTCACTAACCAAATCC+AGG 0.573861 4_2:+8569440 None:intergenic
TTAAAACCGTATCCTGGCTG+TGG 0.574929 4_2:+8571239 None:intergenic
CAAAACAGTTGGCAGATACA+GGG 0.583506 4_2:-8571310 Msa0587070:intron
GCAAGAAAAGCCAACTTCAA+CGG 0.586187 4_2:-8568436 Msa0587070:CDS
ATTTCAGAAAATACAAGACA+AGG 0.589690 4_2:-8571691 Msa0587070:intron
ACTTTCAGTGAAATAGCAGA+AGG 0.592480 4_2:-8568412 Msa0587070:CDS
CGGTAGCTAAAAGATTGCGT+TGG 0.596770 4_2:+8571465 None:intergenic
TCAAGCACAAGTTCAAGCAG+AGG 0.601190 4_2:-8573545 Msa0587070:CDS
ATTGAAATTCACCATATAGA+GGG 0.601281 4_2:+8569811 None:intergenic
GGAAGTTGAGATGGTTTGTG+AGG 0.602667 4_2:-8571638 Msa0587070:CDS
GAAGTTGAGATGGTTTGTGA+GGG 0.604921 4_2:-8571637 Msa0587070:CDS
AGGTTCATATGGACTGACCT+GGG 0.616385 4_2:-8570741 Msa0587070:CDS
GAAAATACAAGACAAGGGCA+AGG 0.626660 4_2:-8571685 Msa0587070:CDS
TTTCAGAAAATACAAGACAA+GGG 0.629712 4_2:-8571690 Msa0587070:intron
CTTGCCACAGTCTATAGCAG+AGG 0.636542 4_2:-8567433 Msa0587070:CDS
AACATAACTAGCGGTTCATG+TGG 0.642604 4_2:+8573708 None:intergenic
TAAACTGCTTCAGGTGTTGG+GGG 0.646226 4_2:-8571103 Msa0587070:CDS
AAGCCGATAATGCTTGCTTG+GGG 0.659097 4_2:-8567471 Msa0587070:CDS
GGATCAGCAAATAGCAGACG+AGG 0.672397 4_2:-8571513 Msa0587070:CDS
AACTCCTCTGCTATAGACTG+TGG 0.685327 4_2:+8567429 None:intergenic
ACATAACCGAACATAACTAG+CGG 0.705980 4_2:+8573699 None:intergenic
AGAATGCTATTATTGCTGAG+CGG 0.715274 4_2:-8569785 Msa0587070:CDS
TTACCTCAGACATAACAACT+CGG 0.745197 4_2:+8571445 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATATTTATACTTTAAAATT+TGG - chr4_2:8572841-8572860 Msa0587070:intron 10.0%
!! TGTATTGAACAATTAATTTA+AGG + chr4_2:8567610-8567629 None:intergenic 15.0%
!! TGTATTGAACAATTAATTTA+AGG + chr4_2:8567610-8567629 None:intergenic 15.0%
!!! TGAATTTATAAGTTTGATTT+TGG - chr4_2:8568011-8568030 Msa0587070:intron 15.0%
!!! TGATTTTATCAATTTATGTT+TGG - chr4_2:8568089-8568108 Msa0587070:intron 15.0%
!!! ATTATATTTTTTCGTTTAGT+TGG - chr4_2:8568915-8568934 Msa0587070:intron 15.0%
!!! TGAAATAAAACTTTGTTATT+AGG + chr4_2:8569240-8569259 None:intergenic 15.0%
!!! AGTATAATTTGATTTATGTT+TGG - chr4_2:8570206-8570225 Msa0587070:intron 15.0%
!! ATTTGTAGAAGTAAAAATAA+GGG + chr4_2:8570613-8570632 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr4_2:8571510-8571529 None:intergenic 15.0%
!! TTTAACTACAAAATTAGAAA+GGG + chr4_2:8571830-8571849 None:intergenic 15.0%
!!! TTTTAACTACAAAATTAGAA+AGG + chr4_2:8571831-8571850 None:intergenic 15.0%
!!! TTCTAATTTTGTAGTTAAAA+AGG - chr4_2:8571831-8571850 Msa0587070:intron 15.0%
!!! TCTAATTTTGTAGTTAAAAA+GGG - chr4_2:8571832-8571851 Msa0587070:intron 15.0%
!! AAATTTACATGAATAAACTA+TGG + chr4_2:8572109-8572128 None:intergenic 15.0%
!!! ATTTTTTGAATTGTTTAGTT+TGG + chr4_2:8572312-8572331 None:intergenic 15.0%
!! AACAATTCAAAAAATTTCTA+TGG - chr4_2:8572317-8572336 Msa0587070:intron 15.0%
!! ATATATTCCAAATTCTATTT+AGG + chr4_2:8572389-8572408 None:intergenic 15.0%
!!! ATACAATATACTACTTATTT+TGG - chr4_2:8572443-8572462 Msa0587070:intron 15.0%
!!! TTTATACTTTAAAATTTGGA+TGG - chr4_2:8572845-8572864 Msa0587070:intron 15.0%
!!! TTCCTTTTAAAAAATTAAAG+AGG - chr4_2:8573581-8573600 Msa0587070:CDS 15.0%
!!! TTCCTCTTTAATTTTTTAAA+AGG + chr4_2:8573586-8573605 None:intergenic 15.0%
!!! TGAATTGATTTTGAAATGTT+TGG - chr4_2:8567494-8567513 Msa0587070:intron 20.0%
!!! CTTTTAGTTAGAATTGATTT+GGG - chr4_2:8568205-8568224 Msa0587070:intron 20.0%
!!! TTTTAGTTAGAATTGATTTG+GGG - chr4_2:8568206-8568225 Msa0587070:intron 20.0%
!! CAAAATCAAACTATAATCAT+AGG + chr4_2:8568424-8568443 None:intergenic 20.0%
!!! CTATGATTATAGTTTGATTT+TGG - chr4_2:8568422-8568441 Msa0587070:CDS 20.0%
!!! TTTAGTCTTCTAACAAATTT+TGG - chr4_2:8568496-8568515 Msa0587070:intron 20.0%
!! TCTCAAAATTCTTATAGAAA+AGG - chr4_2:8569512-8569531 Msa0587070:intron 20.0%
!! TAATATTATCGTAAAAAAGC+TGG - chr4_2:8570539-8570558 Msa0587070:intron 20.0%
!! GATTTGTAGAAGTAAAAATA+AGG + chr4_2:8570614-8570633 None:intergenic 20.0%
!!! TTATGTTCTGAAAAATGAAA+AGG - chr4_2:8571156-8571175 Msa0587070:intron 20.0%
!! ATGATAAATAGATTGTTCAT+AGG - chr4_2:8571285-8571304 Msa0587070:CDS 20.0%
!! TTAACTACAAAATTAGAAAG+GGG + chr4_2:8571829-8571848 None:intergenic 20.0%
!!! CTAATTTTGTAGTTAAAAAG+GGG - chr4_2:8571833-8571852 Msa0587070:intron 20.0%
!!! AACATTTTACCGTTAAAAAA+AGG + chr4_2:8572586-8572605 None:intergenic 20.0%
!! CACACTAAATTTACAATTTA+AGG + chr4_2:8573537-8573556 None:intergenic 20.0%
! TATCAGTAACAAATCCAAAA+GGG + chr4_2:8567222-8567241 None:intergenic 25.0%
! TTATCAGTAACAAATCCAAA+AGG + chr4_2:8567223-8567242 None:intergenic 25.0%
! ATGATGAATTAGTGTATGTT+TGG - chr4_2:8567443-8567462 Msa0587070:CDS 25.0%
!! AGGCTAAAAATTGATTCTAA+GGG + chr4_2:8567590-8567609 None:intergenic 25.0%
!! AAGGCTAAAAATTGATTCTA+AGG + chr4_2:8567591-8567610 None:intergenic 25.0%
!! AGGCTAAAAATTGATTCTAA+GGG + chr4_2:8567590-8567609 None:intergenic 25.0%
!! AAGGCTAAAAATTGATTCTA+AGG + chr4_2:8567591-8567610 None:intergenic 25.0%
! ATGGCTGTTTACATAATATT+TGG - chr4_2:8567935-8567954 Msa0587070:intron 25.0%
! TGGCTGTTTACATAATATTT+GGG - chr4_2:8567936-8567955 Msa0587070:intron 25.0%
!!! AAAAGTGAGTTTTGTTTCTA+AGG - chr4_2:8567964-8567983 Msa0587070:intron 25.0%
! AAGGTAAAGTAATTTATGCT+TGG - chr4_2:8568048-8568067 Msa0587070:intron 25.0%
! CAATTTATGTTTGGATCATT+TGG - chr4_2:8568098-8568117 Msa0587070:intron 25.0%
!!! TTTTAGCTTCTAATGTAAGA+TGG + chr4_2:8568178-8568197 None:intergenic 25.0%
!!! GCTTTTAGTTAGAATTGATT+TGG - chr4_2:8568204-8568223 Msa0587070:intron 25.0%
!! TAACGTATATCGATGATTTT+TGG - chr4_2:8568357-8568376 Msa0587070:intron 25.0%
!!! TAGTTTGATTTTGGTCATTT+TGG - chr4_2:8568431-8568450 Msa0587070:CDS 25.0%
!! TTTTCACAGTATACATTTTG+AGG + chr4_2:8568583-8568602 None:intergenic 25.0%
! TGTATACTGTGAAAACAAAA+TGG - chr4_2:8568588-8568607 Msa0587070:intron 25.0%
! GTATACTGTGAAAACAAAAT+GGG - chr4_2:8568589-8568608 Msa0587070:intron 25.0%
! ATTTCAGAAAATACAAGACA+AGG - chr4_2:8568966-8568985 Msa0587070:intron 25.0%
! TTTCAGAAAATACAAGACAA+GGG - chr4_2:8568967-8568986 Msa0587070:intron 25.0%
! TACGGATCATATATAAAATC+CGG - chr4_2:8568997-8569016 Msa0587070:intron 25.0%
! TTTGCTGAACATATGTTAAA+GGG + chr4_2:8569096-8569115 None:intergenic 25.0%
!! TTTTGCTGAACATATGTTAA+AGG + chr4_2:8569097-8569116 None:intergenic 25.0%
! TAAAGTCTATGTTTGGATTA+TGG + chr4_2:8569280-8569299 None:intergenic 25.0%
!!! ATTTCTTTTTAAGGTCTGTT+TGG + chr4_2:8569807-8569826 None:intergenic 25.0%
! AAACAGACCTTAAAAAGAAA+TGG - chr4_2:8569806-8569825 Msa0587070:CDS 25.0%
!! TTGATTTGAAAAATTGATCC+CGG - chr4_2:8570170-8570189 Msa0587070:intron 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr4_2:8570362-8570381 None:intergenic 25.0%
!! TTTGTCTTTTACAATATCCT+TGG + chr4_2:8570478-8570497 None:intergenic 25.0%
!! ACAAAAATCTCAAAAGTACA+TGG - chr4_2:8570493-8570512 Msa0587070:intron 25.0%
!! TTTTCTCAAATTCACGATTT+TGG - chr4_2:8570586-8570605 Msa0587070:intron 25.0%
! AGAATTGGTGAATTTATATG+AGG + chr4_2:8570641-8570660 None:intergenic 25.0%
! ATATAGAAAACACACAGAAT+TGG + chr4_2:8570656-8570675 None:intergenic 25.0%
! ATTGAAATTCACCATATAGA+GGG + chr4_2:8570849-8570868 None:intergenic 25.0%
! TTCAATGTAATCACATTTGT+TGG - chr4_2:8571535-8571554 Msa0587070:intron 25.0%
! TGATTGACAATAATAAGGTA+CGG - chr4_2:8571658-8571677 Msa0587070:CDS 25.0%
!!! AGCAAAATTTAGTTTTACTC+AGG + chr4_2:8572143-8572162 None:intergenic 25.0%
!!! AAATTTTGCTGACTTAGAAT+TGG - chr4_2:8572153-8572172 Msa0587070:intron 25.0%
!! TCCTTAATTTGGAAATAGAA+AGG - chr4_2:8572488-8572507 Msa0587070:intron 25.0%
!! CCTTAATTTGGAAATAGAAA+GGG - chr4_2:8572489-8572508 Msa0587070:intron 25.0%
! AAATTGTCCATATCTTTACA+AGG - chr4_2:8572554-8572573 Msa0587070:intron 25.0%
!!! AGGATTAGACCTTTTTTTAA+CGG - chr4_2:8572574-8572593 Msa0587070:intron 25.0%
!! TAAGCAATATAACATTGACT+TGG + chr4_2:8572749-8572768 None:intergenic 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + chr4_2:8572896-8572915 None:intergenic 25.0%
!! TGTTTGGATTGACTTATTTA+AGG - chr4_2:8572895-8572914 Msa0587070:intron 25.0%
! AATAAGCTTAAAACAGCATA+TGG + chr4_2:8572987-8573006 None:intergenic 25.0%
!! AATTTAAGCTTGATGTTTTG+AGG + chr4_2:8573267-8573286 None:intergenic 25.0%
! ATCAAGCTTAAATTGATAGA+AGG - chr4_2:8573273-8573292 Msa0587070:intron 25.0%
!!! TAACCTTTGTATTTTTGAAC+AGG - chr4_2:8573400-8573419 Msa0587070:CDS 25.0%
! TACAATTTAAGGAAAAACTC+AGG + chr4_2:8573526-8573545 None:intergenic 25.0%
! TTAAAAGGAACAAACAACAT+AGG + chr4_2:8573571-8573590 None:intergenic 25.0%
!!! GAAATAGATAATGGAATGTT+TGG + chr4_2:8573666-8573685 None:intergenic 25.0%
! ATAAAGGTTTCTAATAGACT+TGG + chr4_2:8573696-8573715 None:intergenic 25.0%
! AGAAACCTTTATGCTAATTA+AGG - chr4_2:8573704-8573723 Msa0587070:five_prime_UTR 25.0%
TAGTAGTTGAAGAAATAGCA+AGG + chr4_2:8567066-8567085 None:intergenic 30.0%
! AAATCATCATTCAACCCTTT+TGG - chr4_2:8567205-8567224 Msa0587070:exon 30.0%
! AGGATTTTCAGACAATTGAA+TGG + chr4_2:8567263-8567282 None:intergenic 30.0%
!! CAATGCTTTTTACTTTCCTT+TGG - chr4_2:8567360-8567379 Msa0587070:CDS 30.0%
AGACTCAAAAGAAAAACCAA+AGG + chr4_2:8567379-8567398 None:intergenic 30.0%
!! TTTGGTTGAAAGTTTGTTGA+AGG - chr4_2:8568029-8568048 Msa0587070:intron 30.0%
! ACTGGAATCAATTCTAAAGA+TGG - chr4_2:8568229-8568248 Msa0587070:intron 30.0%
ATCTCTCATAATCTCAAGTT+TGG + chr4_2:8568299-8568318 None:intergenic 30.0%
GCTTACGAAAATGAAATATC+AGG + chr4_2:8568747-8568766 None:intergenic 30.0%
AATCAGATAATGAGTGCATT+TGG + chr4_2:8568877-8568896 None:intergenic 30.0%
! ATGCACTCATTATCTGATTT+TGG - chr4_2:8568878-8568897 Msa0587070:intron 30.0%
ACGGATCATATATAAAATCC+GGG - chr4_2:8568998-8569017 Msa0587070:intron 30.0%
TTGCTGAACATATGTTAAAG+GGG + chr4_2:8569095-8569114 None:intergenic 30.0%
!!! GTTGTTTTTTCCTTTCCTTT+TGG - chr4_2:8569119-8569138 Msa0587070:intron 30.0%
TACGAGTTAAAGTCTATGTT+TGG + chr4_2:8569287-8569306 None:intergenic 30.0%
!!! GCTATTTTTATACGATATCG+TGG + chr4_2:8569675-8569694 None:intergenic 30.0%
! AGTGTAGCCATTTCTTTTTA+AGG + chr4_2:8569816-8569835 None:intergenic 30.0%
TATGATCACATTTCTCCTTA+AGG - chr4_2:8569883-8569902 Msa0587070:intron 30.0%
ATGATCACATTTCTCCTTAA+GGG - chr4_2:8569884-8569903 Msa0587070:intron 30.0%
TATCTTGCTTGAATTCTTCA+AGG + chr4_2:8569942-8569961 None:intergenic 30.0%
CGTCTAGGAAACTATAATAT+AGG + chr4_2:8570088-8570107 None:intergenic 30.0%
! TTGATTTGAGTGTGTTGTAT+GGG - chr4_2:8570114-8570133 Msa0587070:intron 30.0%
TATACTCAACTCACTTTAAC+CGG + chr4_2:8570192-8570211 None:intergenic 30.0%
TGGATACATTCATGTAAAAG+CGG - chr4_2:8570226-8570245 Msa0587070:intron 30.0%
TAACTAGAAGCTAGAATTTG+GGG + chr4_2:8570298-8570317 None:intergenic 30.0%
CTAACTAGAAGCTAGAATTT+GGG + chr4_2:8570299-8570318 None:intergenic 30.0%
TCTAACTAGAAGCTAGAATT+TGG + chr4_2:8570300-8570319 None:intergenic 30.0%
! AATTTTGTCTTTTGCAAGAG+TGG - chr4_2:8570392-8570411 Msa0587070:intron 30.0%
TCGTGAATTTGAGAAAATAG+AGG + chr4_2:8570583-8570602 None:intergenic 30.0%
ATGCAGCACATCATTTAATT+AGG + chr4_2:8570691-8570710 None:intergenic 30.0%
!! AAGAAACAAAAAGGCATCAT+AGG + chr4_2:8570818-8570837 None:intergenic 30.0%
!! ATGCCTTTTTGTTTCTTTCT+AGG - chr4_2:8570821-8570840 Msa0587070:intron 30.0%
GAACCTAGAAAGAAACAAAA+AGG + chr4_2:8570827-8570846 None:intergenic 30.0%
CATTGAAATTCACCATATAG+AGG + chr4_2:8570850-8570869 None:intergenic 30.0%
!!! AATGCAGTTTTGGATACATA+CGG + chr4_2:8570916-8570935 None:intergenic 30.0%
! CTTTACTCTAAAAGCAAGTT+TGG + chr4_2:8571045-8571064 None:intergenic 30.0%
ATGAAAAGGCTGATGTTTAT+CGG - chr4_2:8571170-8571189 Msa0587070:intron 30.0%
! TGTTTATCGGTTACCTTATT+TGG - chr4_2:8571183-8571202 Msa0587070:intron 30.0%
! TGGAGGATAACATAGTATTT+TGG - chr4_2:8571399-8571418 Msa0587070:intron 30.0%
! GGAGGATAACATAGTATTTT+GGG - chr4_2:8571400-8571419 Msa0587070:intron 30.0%
TGTCAATCATGAGGAATATA+CGG + chr4_2:8571647-8571666 None:intergenic 30.0%
CCTTATTATTGTCAATCATG+AGG + chr4_2:8571656-8571675 None:intergenic 30.0%
CCTCATGATTGACAATAATA+AGG - chr4_2:8571653-8571672 Msa0587070:CDS 30.0%
! ATTTTGTAGTTAAAAAGGGG+TGG - chr4_2:8571836-8571855 Msa0587070:intron 30.0%
! TTTTGTAGTTAAAAAGGGGT+GGG - chr4_2:8571837-8571856 Msa0587070:intron 30.0%
TCCTGTTGTAAAATTAAGCT+CGG - chr4_2:8571927-8571946 Msa0587070:intron 30.0%
!!! GTTTTTTCCTCTGTATTGTT+TGG + chr4_2:8572034-8572053 None:intergenic 30.0%
AATACAGAGGAAAAAACACT+TGG - chr4_2:8572037-8572056 Msa0587070:intron 30.0%
AATAATCAAGCTTCTGATGT+TGG - chr4_2:8572177-8572196 Msa0587070:intron 30.0%
ATAATCAAGCTTCTGATGTT+GGG - chr4_2:8572178-8572197 Msa0587070:intron 30.0%
!! TGAATTGTTTAGTTTGGTGA+AGG + chr4_2:8572306-8572325 None:intergenic 30.0%
CACTACACCTAAATAGAATT+TGG - chr4_2:8572379-8572398 Msa0587070:intron 30.0%
CCCTTTCTATTTCCAAATTA+AGG + chr4_2:8572492-8572511 None:intergenic 30.0%
GTCTAATCCTTGTAAAGATA+TGG + chr4_2:8572564-8572583 None:intergenic 30.0%
! AAATATGTTTCTGTTGATGC+AGG - chr4_2:8572768-8572787 Msa0587070:intron 30.0%
TCATAATCTATCAGAGTTTG+TGG + chr4_2:8573011-8573030 None:intergenic 30.0%
AGCAAAGGCTTATTGTATAA+GGG + chr4_2:8573085-8573104 None:intergenic 30.0%
TAGCAAAGGCTTATTGTATA+AGG + chr4_2:8573086-8573105 None:intergenic 30.0%
! CTAAGTGTTTTATCCAAAGA+AGG - chr4_2:8573118-8573137 Msa0587070:intron 30.0%
! TTTGTTCTTCTTGTTGTAGA+TGG - chr4_2:8573160-8573179 Msa0587070:intron 30.0%
! TTGTTCTTCTTGTTGTAGAT+GGG - chr4_2:8573161-8573180 Msa0587070:intron 30.0%
!!! TTTTGATTTGAGTAAGGACA+TGG + chr4_2:8573496-8573515 None:intergenic 30.0%
ATGTCCTTACTCAAATCAAA+AGG - chr4_2:8573495-8573514 Msa0587070:CDS 30.0%
!!! CTATCCTTTTGATTTGAGTA+AGG + chr4_2:8573502-8573521 None:intergenic 30.0%
GGATGTTTGGAAATAGATAA+TGG + chr4_2:8573675-8573694 None:intergenic 30.0%
TTCTAATAGACTTGGATGTT+TGG + chr4_2:8573688-8573707 None:intergenic 30.0%
CTCAACCTTAATTAGCATAA+AGG + chr4_2:8573712-8573731 None:intergenic 30.0%
TTATGCTAATTAAGGTTGAG+AGG - chr4_2:8573712-8573731 Msa0587070:five_prime_UTR 30.0%
ACATAACCGAACATAACTAG+CGG + chr4_2:8566961-8566980 None:intergenic 35.0%
TGCAAAACAAAGAGCTTCAA+TGG + chr4_2:8567005-8567024 None:intergenic 35.0%
!!! AGCTCTTTGTTTTGCAACAA+TGG - chr4_2:8567009-8567028 Msa0587070:three_prime_UTR 35.0%
GAAATAGCAAGGTTTAGTGT+TGG + chr4_2:8567055-8567074 None:intergenic 35.0%
!! TGTATGTTTGGTTCTACTTC+CGG - chr4_2:8567455-8567474 Msa0587070:CDS 35.0%
! TCAAATCATTTTGCCTACTC+CGG + chr4_2:8567477-8567496 None:intergenic 35.0%
!! AGTAGAATTGATTTTGCCTC+CGG - chr4_2:8567526-8567545 Msa0587070:intron 35.0%
CCTCAAGTTTGAATCAATTC+CGG + chr4_2:8567548-8567567 None:intergenic 35.0%
! AATTGATTCAAACTTGAGGC+TGG - chr4_2:8567549-8567568 Msa0587070:intron 35.0%
!! AAATTTTGGCATAGCCATCT+CGG - chr4_2:8568510-8568529 Msa0587070:intron 35.0%
AAGGCACATGGAAAAATAAG+AGG - chr4_2:8568537-8568556 Msa0587070:intron 35.0%
GAGGTCACTAATCAAACAAA+AGG + chr4_2:8568564-8568583 None:intergenic 35.0%
ACTGAACAGAAAACAGATCA+TGG + chr4_2:8568711-8568730 None:intergenic 35.0%
CGTATAACAACTTTGTGTAC+AGG + chr4_2:8568829-8568848 None:intergenic 35.0%
!!! TTTTTTCCTTTCCTTTTGGC+AGG - chr4_2:8569123-8569142 Msa0587070:intron 35.0%
GGAACAATTGTATTCCTTCA+CGG - chr4_2:8569165-8569184 Msa0587070:intron 35.0%
TTACCTCAGACATAACAACT+CGG + chr4_2:8569215-8569234 None:intergenic 35.0%
GTGTAATTAAAACCGTATCC+TGG + chr4_2:8569427-8569446 None:intergenic 35.0%
!!! GGATACGGTTTTAATTACAC+AGG - chr4_2:8569427-8569446 Msa0587070:intron 35.0%
! TACACAGGTGTTATCATGAA+TGG - chr4_2:8569442-8569461 Msa0587070:intron 35.0%
ACCTGAACAACTAGGTAAAA+CGG + chr4_2:8569588-8569607 None:intergenic 35.0%
CTTTAGATACCTGAACAACT+AGG + chr4_2:8569596-8569615 None:intergenic 35.0%
AACCTACAAGAAATCCCTTA+AGG + chr4_2:8569901-8569920 None:intergenic 35.0%
GGATTTCTTGTAGGTTCATA+TGG - chr4_2:8569905-8569924 Msa0587070:intron 35.0%
AAGTTTAGACGTGCATTCAT+TGG + chr4_2:8570055-8570074 None:intergenic 35.0%
TCAAATCAAGAGATACGTCT+AGG + chr4_2:8570103-8570122 None:intergenic 35.0%
! CTTGATTTGAGTGTGTTGTA+TGG - chr4_2:8570113-8570132 Msa0587070:intron 35.0%
TGATTTGAGTGTGTTGTATG+GGG - chr4_2:8570115-8570134 Msa0587070:intron 35.0%
ATACTCAACTCACTTTAACC+GGG + chr4_2:8570191-8570210 None:intergenic 35.0%
GGATACATTCATGTAAAAGC+GGG - chr4_2:8570227-8570246 Msa0587070:intron 35.0%
! TAAAAACGATTTTGCCTCCA+CGG + chr4_2:8570328-8570347 None:intergenic 35.0%
ACTTAATCACTTAAAGCCGA+TGG - chr4_2:8570427-8570446 Msa0587070:intron 35.0%
TAGTGCTTATGCTTATCCAT+CGG + chr4_2:8570446-8570465 None:intergenic 35.0%
! GTCTTTTACAATATCCTTGG+TGG + chr4_2:8570475-8570494 None:intergenic 35.0%
AGAATGCTATTATTGCTGAG+CGG - chr4_2:8570872-8570891 Msa0587070:intron 35.0%
!!! ATGCAGTTTTGGATACATAC+GGG + chr4_2:8570915-8570934 None:intergenic 35.0%
TTATGTCACTAACCAAATCC+AGG + chr4_2:8571220-8571239 None:intergenic 35.0%
CTTCCTTCTAGCATATACAT+AGG + chr4_2:8571312-8571331 None:intergenic 35.0%
TACTATGTTATCCTCCAACT+AGG + chr4_2:8571396-8571415 None:intergenic 35.0%
ACAATAATAAGGTACGGAGA+GGG - chr4_2:8571664-8571683 Msa0587070:CDS 35.0%
TTGCTCATACTTAAGTCACT+CGG + chr4_2:8571752-8571771 None:intergenic 35.0%
AGAAGCTTATCTTACCAAAC+CGG - chr4_2:8571797-8571816 Msa0587070:intron 35.0%
TTTGTAGTTAAAAAGGGGTG+GGG - chr4_2:8571838-8571857 Msa0587070:intron 35.0%
! GAGCTTAATTTTACAACAGG+AGG + chr4_2:8571928-8571947 None:intergenic 35.0%
GCCATGGGATTCTAATATTT+GGG - chr4_2:8571949-8571968 Msa0587070:intron 35.0%
TCCCAAATATTAGAATCCCA+TGG + chr4_2:8571953-8571972 None:intergenic 35.0%
ACTTTCAGTGAAATAGCAGA+AGG - chr4_2:8572245-8572264 Msa0587070:intron 35.0%
GAATTGATAAGCTGTGATAG+TGG - chr4_2:8572339-8572358 Msa0587070:intron 35.0%
CAACTCAAGCATCCTTAATT+TGG - chr4_2:8572477-8572496 Msa0587070:intron 35.0%
ATTTGGAAATAGAAAGGGCA+TGG - chr4_2:8572494-8572513 Msa0587070:intron 35.0%
!! AAACTGTTGACTTGGTTGTT+GGG + chr4_2:8572654-8572673 None:intergenic 35.0%
!! AAAACTGTTGACTTGGTTGT+TGG + chr4_2:8572655-8572674 None:intergenic 35.0%
! CTAGCAAAAAACTGTTGACT+TGG + chr4_2:8572662-8572681 None:intergenic 35.0%
TTCTTCACCTATGATGTACT+CGG + chr4_2:8572692-8572711 None:intergenic 35.0%
!! ATATAACATTGACTTGGTGC+TGG + chr4_2:8572743-8572762 None:intergenic 35.0%
AGTTGAGCAGTTTATAGCAA+AGG + chr4_2:8573100-8573119 None:intergenic 35.0%
TTATTCTACTGTGCCTTCTT+TGG + chr4_2:8573134-8573153 None:intergenic 35.0%
! AAAGAAGGCACAGTAGAATA+AGG - chr4_2:8573133-8573152 Msa0587070:intron 35.0%
ATAGCAGAGGAGTTTCAAAA+AGG - chr4_2:8573237-8573256 Msa0587070:intron 35.0%
CTTAAATTGATAGAAGGAGC+TGG - chr4_2:8573279-8573298 Msa0587070:intron 35.0%
AGGCCTGTTCAAAAATACAA+AGG + chr4_2:8573406-8573425 None:intergenic 35.0%
! AAAGCATCAACAACTTTCTC+AGG + chr4_2:8573426-8573445 None:intergenic 35.0%
AACATAACTAGCGGTTCATG+TGG + chr4_2:8566952-8566971 None:intergenic 40.0%
CATGAACCGCTAGTTATGTT+CGG - chr4_2:8566952-8566971 Msa0587070:three_prime_UTR 40.0%
CAGACAATTGAATGGCACTA+CGG + chr4_2:8567255-8567274 None:intergenic 40.0%
CAAGTTTGAATCAATTCCGG+AGG + chr4_2:8567545-8567564 None:intergenic 40.0%
! CCGGAATTGATTCAAACTTG+AGG - chr4_2:8567545-8567564 Msa0587070:intron 40.0%
AACTACTTGTGTAAGCAGCA+TGG - chr4_2:8567916-8567935 Msa0587070:intron 40.0%
!! GTTAGAATTGATTTGGGGAC+TGG - chr4_2:8568211-8568230 Msa0587070:intron 40.0%
TGCAACTGAAGAAGAAACTG+TGG + chr4_2:8568799-8568818 None:intergenic 40.0%
GAAAATACAAGACAAGGGCA+AGG - chr4_2:8568972-8568991 Msa0587070:intron 40.0%
TAAAATCCGGGAAGTTGAGA+TGG - chr4_2:8569010-8569029 Msa0587070:intron 40.0%
! GAAGTTGAGATGGTTTGTGA+GGG - chr4_2:8569020-8569039 Msa0587070:intron 40.0%
! TATTTGCTGATCCTGCCAAA+AGG + chr4_2:8569137-8569156 None:intergenic 40.0%
TTTCTCCCTCTCAAAACAGT+TGG - chr4_2:8569336-8569355 Msa0587070:intron 40.0%
!!! ATCTGCCAACTGTTTTGAGA+GGG + chr4_2:8569344-8569363 None:intergenic 40.0%
!! TATCTGCCAACTGTTTTGAG+AGG + chr4_2:8569345-8569364 None:intergenic 40.0%
TCAAAACAGTTGGCAGATAC+AGG - chr4_2:8569346-8569365 Msa0587070:intron 40.0%
CAAAACAGTTGGCAGATACA+GGG - chr4_2:8569347-8569366 Msa0587070:intron 40.0%
AAACCAAATCCTATCCAGTC+AGG + chr4_2:8569388-8569407 None:intergenic 40.0%
AAAGGAGTTCCATGATGCAT+TGG - chr4_2:8569530-8569549 Msa0587070:intron 40.0%
GCAGTTTATCCAATGCATCA+TGG + chr4_2:8569542-8569561 None:intergenic 40.0%
TGCATTGGATAAACTGCTTC+AGG - chr4_2:8569545-8569564 Msa0587070:intron 40.0%
GATAAACTGCTTCAGGTGTT+GGG - chr4_2:8569552-8569571 Msa0587070:intron 40.0%
! ATAAACTGCTTCAGGTGTTG+GGG - chr4_2:8569553-8569572 Msa0587070:intron 40.0%
! TCCGTTTTACCTAGTTGTTC+AGG - chr4_2:8569584-8569603 Msa0587070:intron 40.0%
CTCCTTAAGGGATTTCTTGT+AGG - chr4_2:8569896-8569915 Msa0587070:intron 40.0%
!! ATGGGAGATGAGCTTGTTAA+TGG + chr4_2:8569989-8570008 None:intergenic 40.0%
TGCTGAAATAGTCCAGGAAT+GGG + chr4_2:8570007-8570026 None:intergenic 40.0%
GAATGCACGTCTAAACTTGA+TGG - chr4_2:8570057-8570076 Msa0587070:intron 40.0%
! CTTCTAGTTAGAATCAACCG+TGG - chr4_2:8570308-8570327 Msa0587070:intron 40.0%
AAGCACTATGTTTACCACCA+AGG - chr4_2:8570458-8570477 Msa0587070:intron 40.0%
! AGCTGGCTTAAATCGAGTTA+TGG - chr4_2:8570556-8570575 Msa0587070:intron 40.0%
CTTTCTAGGTTCCCTCTATA+TGG - chr4_2:8570835-8570854 Msa0587070:intron 40.0%
GCTCAGCAATAATAGCATTC+TGG + chr4_2:8570873-8570892 None:intergenic 40.0%
! TTACCTTATTTGGCAAGCAG+TGG - chr4_2:8571193-8571212 Msa0587070:intron 40.0%
GGACCTATGTATATGCTAGA+AGG - chr4_2:8571306-8571325 Msa0587070:intron 40.0%
TTGTCTGAAAACACAAGTCC+AGG - chr4_2:8571341-8571360 Msa0587070:intron 40.0%
!! CATTTGTTGGTGTCACACAT+TGG - chr4_2:8571548-8571567 Msa0587070:intron 40.0%
ATCATGAGGAATATACGGTG+AGG + chr4_2:8571642-8571661 None:intergenic 40.0%
GACAATAATAAGGTACGGAG+AGG - chr4_2:8571663-8571682 Msa0587070:CDS 40.0%
CAATAATAAGGTACGGAGAG+GGG - chr4_2:8571665-8571684 Msa0587070:CDS 40.0%
ATGTATCTCTTCGTACGAGA+AGG - chr4_2:8571692-8571711 Msa0587070:intron 40.0%
GGTAAGATAAGCTTCTAACG+AGG + chr4_2:8571793-8571812 None:intergenic 40.0%
TACAAAATTAGAAAGGGGCG+AGG + chr4_2:8571824-8571843 None:intergenic 40.0%
TTGTAGTTAAAAAGGGGTGG+GGG - chr4_2:8571839-8571858 Msa0587070:intron 40.0%
GACTAGGTAAGCCATAATGA+GGG + chr4_2:8571874-8571893 None:intergenic 40.0%
CTTACCTAGTCGTCTATATC+AGG - chr4_2:8571883-8571902 Msa0587070:intron 40.0%
! GCCGAGCTTAATTTTACAAC+AGG + chr4_2:8571931-8571950 None:intergenic 40.0%
TGTAAAATTAAGCTCGGCCA+TGG - chr4_2:8571933-8571952 Msa0587070:intron 40.0%
GTAAAATTAAGCTCGGCCAT+GGG - chr4_2:8571934-8571953 Msa0587070:intron 40.0%
GGCCATGGGATTCTAATATT+TGG - chr4_2:8571948-8571967 Msa0587070:intron 40.0%
! TTGTTTGGTAGCAAGTCTCT+CGG + chr4_2:8572019-8572038 None:intergenic 40.0%
CTTGCTACCAAACAATACAG+AGG - chr4_2:8572024-8572043 Msa0587070:intron 40.0%
GCAAGAAAAGCCAACTTCAA+CGG - chr4_2:8572221-8572240 Msa0587070:intron 40.0%
!! ACTGAAAGTACCGTTGAAGT+TGG + chr4_2:8572234-8572253 None:intergenic 40.0%
CAGAAGGATTTGCAACTAAC+AGG - chr4_2:8572261-8572280 Msa0587070:intron 40.0%
! TAGAAAGGGCATGGTGAAAT+TGG - chr4_2:8572503-8572522 Msa0587070:intron 40.0%
! AGAAAGGGCATGGTGAAATT+GGG - chr4_2:8572504-8572523 Msa0587070:intron 40.0%
! CCTACAACTTGTTCTCTGTT+AGG + chr4_2:8572530-8572549 None:intergenic 40.0%
CCTAACAGAGAACAAGTTGT+AGG - chr4_2:8572527-8572546 Msa0587070:intron 40.0%
CGGTAAAATGTTAGTGCTGT+CGG - chr4_2:8572594-8572613 Msa0587070:intron 40.0%
TCGGTATTATGCTGAGTGTA+GGG - chr4_2:8572613-8572632 Msa0587070:intron 40.0%
!! AACTGTTGACTTGGTTGTTG+GGG + chr4_2:8572653-8572672 None:intergenic 40.0%
ATTCGTACCGAGTACATCAT+AGG - chr4_2:8572682-8572701 Msa0587070:intron 40.0%
TACTTCTGACCAAGAAGCTT+GGG - chr4_2:8572714-8572733 Msa0587070:intron 40.0%
AAAGTCTCTTGAACCAGAAG+TGG - chr4_2:8572806-8572825 Msa0587070:intron 40.0%
TTGAACCAGAAGTGGTAAAC+TGG - chr4_2:8572814-8572833 Msa0587070:intron 40.0%
CAAAACCAGTTTACCACTTC+TGG + chr4_2:8572822-8572841 None:intergenic 40.0%
ATAAGCCGATAATGCTTGCT+TGG - chr4_2:8573184-8573203 Msa0587070:intron 40.0%
TAAGCCGATAATGCTTGCTT+GGG - chr4_2:8573185-8573204 Msa0587070:intron 40.0%
AATCCCCAAGCAAGCATTAT+CGG + chr4_2:8573192-8573211 None:intergenic 40.0%
GTCATATGCCACAAGAAGAT+TGG - chr4_2:8573301-8573320 Msa0587070:intron 40.0%
TACTCTCACCAATCTTCTTG+TGG + chr4_2:8573312-8573331 None:intergenic 40.0%
ACAACCAAAACTGACCTTGA+AGG - chr4_2:8573467-8573486 Msa0587070:CDS 40.0%
! GATTCCTTCAAGGTCAGTTT+TGG + chr4_2:8573474-8573493 None:intergenic 40.0%
TAAGGACATGGATTCCTTCA+AGG + chr4_2:8573484-8573503 None:intergenic 40.0%
TCAAGCACAAGTTCAAGCAG+AGG - chr4_2:8567112-8567131 Msa0587070:three_prime_UTR 45.0%
TCTGAAAATCCTGCTGAAGC+TGG - chr4_2:8567271-8567290 Msa0587070:intron 45.0%
!! TTTGGTTCTACTTCCGGAGT+AGG - chr4_2:8567461-8567480 Msa0587070:CDS 45.0%
ACCTAAGGCGACTGTCTTAA+TGG - chr4_2:8568623-8568642 Msa0587070:intron 45.0%
TCCATTAAGACAGTCGCCTT+AGG + chr4_2:8568627-8568646 None:intergenic 45.0%
CAAGACAAGGGCAAGGAATA+CGG - chr4_2:8568979-8568998 Msa0587070:intron 45.0%
CACAAACCATCTCAACTTCC+CGG + chr4_2:8569019-8569038 None:intergenic 45.0%
! GGAAGTTGAGATGGTTTGTG+AGG - chr4_2:8569019-8569038 Msa0587070:intron 45.0%
! AGATGGTTTGTGAGGGAAAC+TGG - chr4_2:8569027-8569046 Msa0587070:intron 45.0%
CGGTAGCTAAAAGATTGCGT+TGG + chr4_2:8569195-8569214 None:intergenic 45.0%
CTACCGAGTTGTTATGTCTG+AGG - chr4_2:8569209-8569228 Msa0587070:intron 45.0%
TTAAAACCGTATCCTGGCTG+TGG + chr4_2:8569421-8569440 None:intergenic 45.0%
GGATAAACTGCTTCAGGTGT+TGG - chr4_2:8569551-8569570 Msa0587070:intron 45.0%
!! TAAACTGCTTCAGGTGTTGG+GGG - chr4_2:8569554-8569573 Msa0587070:intron 45.0%
! TAGGTTCATATGGACTGACC+TGG - chr4_2:8569915-8569934 Msa0587070:intron 45.0%
! AGGTTCATATGGACTGACCT+GGG - chr4_2:8569916-8569935 Msa0587070:intron 45.0%
CTGCTGAAATAGTCCAGGAA+TGG + chr4_2:8570008-8570027 None:intergenic 45.0%
CTTAGCTGCTGAAATAGTCC+AGG + chr4_2:8570013-8570032 None:intergenic 45.0%
CTGGACTATTTCAGCAGCTA+AGG - chr4_2:8570011-8570030 Msa0587070:intron 45.0%
TTTCAGCAGCTAAGGTTAGC+TGG - chr4_2:8570019-8570038 Msa0587070:intron 45.0%
! GTGTGTTGTATGGGGTTTTG+TGG - chr4_2:8570123-8570142 Msa0587070:intron 45.0%
CTAGTTAGAATCAACCGTGG+AGG - chr4_2:8570311-8570330 Msa0587070:intron 45.0%
GCTGAGCGGTTTATTGAAAG+AGG - chr4_2:8570886-8570905 Msa0587070:intron 45.0%
ATGCGATGTCCATGCTTCAT+AGG + chr4_2:8571476-8571495 None:intergenic 45.0%
! ACTTTATGCGCCCCTTTTCT+AGG - chr4_2:8571600-8571619 Msa0587070:intron 45.0%
! CTTTATGCGCCCCTTTTCTA+GGG - chr4_2:8571601-8571620 Msa0587070:intron 45.0%
CGACTAGGTAAGCCATAATG+AGG + chr4_2:8571875-8571894 None:intergenic 45.0%
AGCACCTGATATAGACGACT+AGG + chr4_2:8571890-8571909 None:intergenic 45.0%
!! AGCTGTGATAGTGGTAGAGA+AGG - chr4_2:8572348-8572367 Msa0587070:intron 45.0%
! GATAGTGGTAGAGAAGGCTA+AGG - chr4_2:8572354-8572373 Msa0587070:intron 45.0%
GTCGGTATTATGCTGAGTGT+AGG - chr4_2:8572612-8572631 Msa0587070:intron 45.0%
CAAGCTTCTTGGTCAGAAGT+AGG + chr4_2:8572715-8572734 None:intergenic 45.0%
CTACTTCTGACCAAGAAGCT+TGG - chr4_2:8572713-8572732 Msa0587070:intron 45.0%
ATCCAAACCTAGAGCCTGTT+TGG - chr4_2:8572879-8572898 Msa0587070:intron 45.0%
!! ATCCAAACAGGCTCTAGGTT+TGG + chr4_2:8572884-8572903 None:intergenic 45.0%
AGTCAATCCAAACAGGCTCT+AGG + chr4_2:8572889-8572908 None:intergenic 45.0%
AAGCCGATAATGCTTGCTTG+GGG - chr4_2:8573186-8573205 Msa0587070:intron 45.0%
AACTCCTCTGCTATAGACTG+TGG + chr4_2:8573231-8573250 None:intergenic 45.0%
TGAATGGCACTACGGCTTGA+TGG + chr4_2:8567247-8567266 None:intergenic 50.0%
GCATAGCCATCTCGGAACTA+AGG - chr4_2:8568518-8568537 Msa0587070:intron 50.0%
CATGTGCCTTAGTTCCGAGA+TGG + chr4_2:8568527-8568546 None:intergenic 50.0%
CATCTCGGAACTAAGGCACA+TGG - chr4_2:8568525-8568544 Msa0587070:intron 50.0%
GCTGATCCTGCCAAAAGGAA+AGG + chr4_2:8569132-8569151 None:intergenic 50.0%
GGATCAGCAAATAGCAGACG+AGG - chr4_2:8569144-8569163 Msa0587070:intron 50.0%
GCTTGAATTCTTCAAGGCCC+AGG + chr4_2:8569936-8569955 None:intergenic 50.0%
ACAAGCTCATCTCCCATTCC+TGG - chr4_2:8569992-8570011 Msa0587070:intron 50.0%
GGTCCACTGCTTGCCAAATA+AGG + chr4_2:8571199-8571218 None:intergenic 50.0%
TATTTGGCAAGCAGTGGACC+TGG - chr4_2:8571199-8571218 Msa0587070:intron 50.0%
CGATGTCCATGCTTCATAGG+CGG + chr4_2:8571473-8571492 None:intergenic 50.0%
TCACGCCCAACCCTAGAAAA+GGG + chr4_2:8571614-8571633 None:intergenic 50.0%
TTCACGCCCAACCCTAGAAA+AGG + chr4_2:8571615-8571634 None:intergenic 50.0%
ACGAGGTGACTCGTTCACTT+GGG + chr4_2:8571776-8571795 None:intergenic 50.0%
AACGAGGTGACTCGTTCACT+TGG + chr4_2:8571777-8571796 None:intergenic 50.0%
AATTAGAAAGGGGCGAGGAC+CGG + chr4_2:8571819-8571838 None:intergenic 50.0%
TAGTTAAAAAGGGGTGGGGG+CGG - chr4_2:8571842-8571861 Msa0587070:intron 50.0%
! CCTTTTAGGCTTGAGGCTCA+GGG + chr4_2:8571978-8571997 None:intergenic 50.0%
!!! TGAGAGTGCCTTCGCCTTTT+AGG + chr4_2:8571992-8572011 None:intergenic 50.0%
!! AAAGGCGAAGGCACTCTCAT+TGG - chr4_2:8571993-8572012 Msa0587070:intron 50.0%
!! TGTTGACTTGGTTGTTGGGG+TGG + chr4_2:8572650-8572669 None:intergenic 50.0%
!! TGCTGGTTTCCCAAGCTTCT+TGG + chr4_2:8572726-8572745 None:intergenic 50.0%
!! CAGGCTCTAGGTTTGGATAC+TGG + chr4_2:8572877-8572896 None:intergenic 50.0%
CTTGCCACAGTCTATAGCAG+AGG - chr4_2:8573224-8573243 Msa0587070:intron 50.0%
CCAACATTGCCAGCTTCAGC+AGG + chr4_2:8567283-8567302 None:intergenic 55.0%
CCTGCTGAAGCTGGCAATGT+TGG - chr4_2:8567280-8567299 Msa0587070:intron 55.0%
TGGGCCATGCATGTGACCTA+AGG - chr4_2:8568608-8568627 Msa0587070:intron 55.0%
GTCGCCTTAGGTCACATGCA+TGG + chr4_2:8568615-8568634 None:intergenic 55.0%
TGCTTTGCGCCTGACTGGAT+AGG - chr4_2:8569376-8569395 Msa0587070:intron 55.0%
GCGCCTGACTGGATAGGATT+TGG - chr4_2:8569382-8569401 Msa0587070:intron 55.0%
TTCAGTGACAAGCCACAGCC+AGG - chr4_2:8569406-8569425 Msa0587070:intron 55.0%
GACAAGCCACAGCCAGGATA+CGG - chr4_2:8569412-8569431 Msa0587070:intron 55.0%
GCAAGCAGTGGACCTGGATT+TGG - chr4_2:8571205-8571224 Msa0587070:intron 55.0%
AGGTCACCACTGACCCTGAA+CGG + chr4_2:8571376-8571395 None:intergenic 55.0%
AGGGTCAGTGGTGACCTAGT+TGG - chr4_2:8571379-8571398 Msa0587070:intron 55.0%
GTCAGTGGTGACCTAGTTGG+AGG - chr4_2:8571382-8571401 Msa0587070:intron 55.0%
ACGCATCCGCCTATGAAGCA+TGG - chr4_2:8571464-8571483 Msa0587070:CDS 55.0%
!!! ATGCGCCCCTTTTCTAGGGT+TGG - chr4_2:8571605-8571624 Msa0587070:intron 55.0%
!!! TGCGCCCCTTTTCTAGGGTT+GGG - chr4_2:8571606-8571625 Msa0587070:intron 55.0%
CACGCCCAACCCTAGAAAAG+GGG + chr4_2:8571613-8571632 None:intergenic 55.0%
GGCGGTTGCTTCCCTCATTA+TGG - chr4_2:8571860-8571879 Msa0587070:intron 55.0%
CCCTGAGCCTCAAGCCTAAA+AGG - chr4_2:8571975-8571994 Msa0587070:intron 55.0%
! GCCTTTTAGGCTTGAGGCTC+AGG + chr4_2:8571979-8571998 None:intergenic 55.0%
GCCTCAAGCCTAAAAGGCGA+AGG - chr4_2:8571981-8572000 Msa0587070:intron 55.0%
! GCCTTCGCCTTTTAGGCTTG+AGG + chr4_2:8571985-8572004 None:intergenic 55.0%
! ATTGCGTTGGCGCTCCGTGA+AGG + chr4_2:8569182-8569201 None:intergenic 60.0%
TCCACTGCTTTGCGCCTGAC+TGG - chr4_2:8569371-8569390 Msa0587070:intron 60.0%
TCCAGTCAGGCGCAAAGCAG+TGG + chr4_2:8569375-8569394 None:intergenic 60.0%
CAGGTCACCGTCTCCGTTCA+GGG - chr4_2:8571360-8571379 Msa0587070:intron 60.0%
CCACTGACCCTGAACGGAGA+CGG + chr4_2:8571370-8571389 None:intergenic 60.0%
CCTGAACGGAGACGGTGACC+TGG + chr4_2:8571362-8571381 None:intergenic 65.0%
CCAGGTCACCGTCTCCGTTC+AGG - chr4_2:8571359-8571378 Msa0587070:intron 65.0%
CCGTCTCCGTTCAGGGTCAG+TGG - chr4_2:8571367-8571386 Msa0587070:intron 65.0%
GAAAGGGGCGAGGACCGGTT+TGG + chr4_2:8571814-8571833 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 8566942 8573737 8566942 ID=Msa0587070;Name=Msa0587070
chr4_2 mRNA 8566942 8573737 8566942 ID=Msa0587070-mRNA-1;Parent=Msa0587070;Name=Msa0587070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=86|1|1|1|1|1|11|276|383
chr4_2 exon 8566942 8567257 8566942 ID=Msa0587070-mRNA-1:exon:2330;Parent=Msa0587070-mRNA-1
chr4_2 exon 8567357 8567500 8567357 ID=Msa0587070-mRNA-1:exon:2329;Parent=Msa0587070-mRNA-1
chr4_2 exon 8568397 8568472 8568397 ID=Msa0587070-mRNA-1:exon:2328;Parent=Msa0587070-mRNA-1
chr4_2 exon 8569453 8569523 8569453 ID=Msa0587070-mRNA-1:exon:2327;Parent=Msa0587070-mRNA-1
chr4_2 exon 8569765 8569836 8569765 ID=Msa0587070-mRNA-1:exon:2326;Parent=Msa0587070-mRNA-1
chr4_2 exon 8570647 8570774 8570647 ID=Msa0587070-mRNA-1:exon:2325;Parent=Msa0587070-mRNA-1
chr4_2 exon 8571074 8571150 8571074 ID=Msa0587070-mRNA-1:exon:2324;Parent=Msa0587070-mRNA-1
chr4_2 exon 8571231 8571324 8571231 ID=Msa0587070-mRNA-1:exon:2323;Parent=Msa0587070-mRNA-1
chr4_2 exon 8571449 8571534 8571449 ID=Msa0587070-mRNA-1:exon:2322;Parent=Msa0587070-mRNA-1
chr4_2 exon 8571631 8571706 8571631 ID=Msa0587070-mRNA-1:exon:2321;Parent=Msa0587070-mRNA-1
chr4_2 exon 8573364 8573737 8573364 ID=Msa0587070-mRNA-1:exon:2320;Parent=Msa0587070-mRNA-1
chr4_2 five_prime_UTR 8573652 8573737 8573652 ID=Msa0587070-mRNA-1:five_prime_utr;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8573364 8573651 8573364 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8571631 8571706 8571631 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8571449 8571534 8571449 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8571231 8571324 8571231 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8571074 8571150 8571074 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8570647 8570774 8570647 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8569765 8569836 8569765 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8569453 8569523 8569453 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8568397 8568472 8568397 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8567357 8567500 8567357 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 CDS 8567218 8567257 8567218 ID=Msa0587070-mRNA-1:cds;Parent=Msa0587070-mRNA-1
chr4_2 three_prime_UTR 8566942 8567217 8566942 ID=Msa0587070-mRNA-1:three_prime_utr;Parent=Msa0587070-mRNA-1
Gene Sequence

>Msa0587070

ATGGTGTTTTATACTATGTATTCTCCAACACTAAACCTTGCTATTTCTTCAACTACTACAAACAACTGTAGCAGAAGAAGAGCATCAAGCACAAGTTCAAGCAGAGGAGTGAATAGTATCATAATCAGAGCTAGTTCTTCAGAGAAAAATGAATTCAAAAGCAATGATCAAGATGATAAATCATCATTCAACCCTTTTGGATTTGTTACTGATAATCCATCAAGCCGTAGTGCCATTCAATTGTCTGAAAATCCTGCTGAAGCTGGCAATGTTGGACAAATGATCGATAAAATACAAGACAAGGGCAAGGAATACGGATCATATATAAAATCCGGGAAGTTGAGATGGTTTGTGAGGGAAACTGGATCAGCAAATAGCAGACGAGGAACAATTGTATTCCTTCACGGAGCGCCAACGCAATCTTTTAGCTACCGAGTTGTTATGTCTGAGTTGGCAGATACAGGGTTCCACTGCTTTGCGCCTGACTGGATAGGATTTGGTTTCAGTGACAAGCCACAGCCAGGATACGGTTTTAATTACACAGAAAAGGAGTTCCATGATGCATTGGATAAACTGCTTCAGGTGTTGGGGGTCGAGTCTCCGTTTTACCTAGTTGTTCAGGGATTTCTTGTAGGTTCATATGGACTGACCTGGGCCTTGAAGAATTCAAGCAAGATATCAAAGCTAGCAATACTAAACAGTCCATTAACAAGCTCATCTCCCATTCCTGGACTATTTCAGCAGCTAAGGTTCCCTCTATATGGTGAATTTCAATGCCAGAATGCTATTATTGCTGAGCGGTTTATTGAAAGAGGTAGCCCTTATGTTCTGAAAAATGAAAAGGCTGATGTTTATCGGTTACCTTATTTGGCAAGCAGTGGACCTGGATTTGCTCTACTTGAAGCAGCAAGAAAAGCCAACTTCAACGGTACTTTCAGTGAAATAGCAGAAGGATTTGCAACTAACAGATGGGATAAGCCGATAATGCTTGCTTGGGGATTATCAGACAAGTACTTGCCACAGTCTATAGCAGAGGAGTTTCAAAAAGGAAATCCTCAAAACATCAAGCTTAAATTGATAGAAGGAGCTGGTCATATGCCACAAGAAGATTGGCCTGAGAAAGTTGTTGATGCTTTGAGAATGTTCTTTTGA

Protein sequence

>Msa0587070

MVFYTMYSPTLNLAISSTTTNNCSRRRASSTSSSRGVNSIIIRASSSEKNEFKSNDQDDKSSFNPFGFVTDNPSSRSAIQLSENPAEAGNVGQMIDKIQDKGKEYGSYIKSGKLRWFVRETGSANSRRGTIVFLHGAPTQSFSYRVVMSELADTGFHCFAPDWIGFGFSDKPQPGYGFNYTEKEFHDALDKLLQVLGVESPFYLVVQGFLVGSYGLTWALKNSSKISKLAILNSPLTSSSPIPGLFQQLRFPLYGEFQCQNAIIAERFIERGSPYVLKNEKADVYRLPYLASSGPGFALLEAARKANFNGTFSEIAEGFATNRWDKPIMLAWGLSDKYLPQSIAEEFQKGNPQNIKLKLIEGAGHMPQEDWPEKVVDALRMFF*