AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167570 MtrunA17_Chr1g0183221 100.000 182 0 0 1 182 1 182 1.42e-136 378
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167570 AT4G28660.1 68.966 145 45 0 37 181 37 181 1.07e-71 215
Msa0167570 AT4G28660.2 68.966 145 45 0 37 181 52 196 2.63e-71 214

Find 84 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGAATGAATTGAATTT+TGG 0.043355 1_4:-49492051 None:intergenic
ACTAGTGCCATTTATCATTA+AGG 0.216833 1_4:+49492853 Msa0167570:three_prime_UTR
AAAGGGACTTCACCACTAAA+AGG 0.270678 1_4:+49492782 Msa0167570:three_prime_UTR
AATAAATCCTTAATGATAAA+TGG 0.272615 1_4:-49492860 None:intergenic
TTTAGTGGTGAAGTCCCTTT+TGG 0.307576 1_4:-49492779 None:intergenic
ACAGAGGACAAAAGAATAGA+AGG 0.342749 1_4:-49492406 None:intergenic
CAATAAGCTTTGGGATCTAT+AGG 0.360359 1_4:-49492476 None:intergenic
GGAGAAGTAGGCGACATTAC+TGG 0.365446 1_4:+49492179 Msa0167570:CDS
CCCAAAATTCAATTCATTCA+AGG 0.375868 1_4:+49492050 Msa0167570:CDS
AGATATTCCACTACGATAAC+AGG 0.387963 1_4:-49492654 None:intergenic
TGTATATCATTAATAAATAC+AGG 0.395234 1_4:+49492932 Msa0167570:three_prime_UTR
TTCCTACTGAGCTTATTTGT+GGG 0.403592 1_4:+49492621 Msa0167570:three_prime_UTR
TAGAAGACAACCACTAGAAA+AGG 0.405224 1_4:-49492960 None:intergenic
TTTCCTACTGAGCTTATTTG+TGG 0.411612 1_4:+49492620 Msa0167570:three_prime_UTR
AACTTAAATTCCTCATTCAA+TGG 0.412356 1_4:+49491939 Msa0167570:CDS
CATTCCAATTCGATAAAATC+TGG 0.412583 1_4:-49492723 None:intergenic
TTCCCCGCCATCATGATAAC+CGG 0.429760 1_4:-49492026 None:intergenic
TGGAGTCCGCATTATATACT+TGG 0.434350 1_4:-49492288 None:intergenic
CAAATGGCATGGCTATCTTC+AGG 0.434591 1_4:+49492126 Msa0167570:CDS
AGGTGTAGAACAATAAGCTT+TGG 0.436512 1_4:-49492486 None:intergenic
ATTTGCATGTGCCAAGTTTG+AGG 0.436765 1_4:+49491967 Msa0167570:CDS
TAATGCGGACTCCACGGGAC+TGG 0.442232 1_4:+49492297 Msa0167570:CDS
AAATCAAAGGATGGAACAAA+TGG 0.447952 1_4:+49492110 Msa0167570:CDS
TTTGATTCTTCTGGAGAAGT+AGG 0.453284 1_4:+49492167 Msa0167570:CDS
GGATAGGTTCATGAGATTCA+TGG 0.460311 1_4:+49492319 Msa0167570:CDS
TATTTCCTCCTCTATTAGCT+AGG 0.463738 1_4:-49492678 None:intergenic
CATTTACATCAACAGATTGA+AGG 0.465513 1_4:-49492229 None:intergenic
GCCACTTCTTTAATTATCCA+TGG 0.476745 1_4:+49491909 Msa0167570:intron
GAGCGATACTCTGATGCTAA+TGG 0.480616 1_4:+49492341 Msa0167570:CDS
GGTGTAGAACAATAAGCTTT+GGG 0.488921 1_4:-49492485 None:intergenic
AATTTAAGTTCAAACTTCCA+TGG 0.492114 1_4:-49491926 None:intergenic
CATGATAACCGGCATGTGCA+TGG 0.501061 1_4:-49492015 None:intergenic
ATGCCGGTTATCATGATGGC+GGG 0.504435 1_4:+49492023 Msa0167570:CDS
AGACCCTGCTAGGATCCAAA+AGG 0.506528 1_4:+49492764 Msa0167570:three_prime_UTR
AAGGGACTTCACCACTAAAA+GGG 0.511294 1_4:+49492783 Msa0167570:three_prime_UTR
CAGAAGCCACGCTCATACTC+AGG 0.512959 1_4:+49491165 Msa0167570:CDS
CTTATTGTTCTACACCTCTA+CGG 0.516117 1_4:+49492492 Msa0167570:three_prime_UTR
AATGCGGACTCCACGGGACT+GGG 0.524053 1_4:+49492298 Msa0167570:CDS
GGACTCCACGGGACTGGGAT+AGG 0.532501 1_4:+49492303 Msa0167570:CDS
ATCCATTGGTGTTGCTGACA+TGG 0.533248 1_4:-49490921 None:intergenic
ACATTATCATCACAAGTGAA+TGG 0.534967 1_4:+49490974 Msa0167570:five_prime_UTR
ATGGATTGTCACAAATCTGA+TGG 0.535998 1_4:+49490938 Msa0167570:five_prime_UTR
AGAAGACAACCACTAGAAAA+GGG 0.540425 1_4:-49492959 None:intergenic
GTATATAATGCGGACTCCAC+GGG 0.541871 1_4:+49492292 Msa0167570:CDS
TTTGAGTACTAGACCCTGCT+AGG 0.544015 1_4:+49492754 Msa0167570:three_prime_UTR
GCACATGCCGGTTATCATGA+TGG 0.545209 1_4:+49492019 Msa0167570:CDS
ATACTTGGCTTCAATTCCTG+AGG 0.546032 1_4:-49492273 None:intergenic
ATCATCGGTAACCTCAAACT+TGG 0.546137 1_4:-49491978 None:intergenic
ATGATAACCGGCATGTGCAT+GGG 0.547496 1_4:-49492014 None:intergenic
TCAGATTTGTGACAATCCAT+TGG 0.550116 1_4:-49490935 None:intergenic
ATTTCCTCCTCTATTAGCTA+GGG 0.550628 1_4:-49492677 None:intergenic
ATGGCACTAGTAGAGATCAT+TGG 0.550859 1_4:-49492841 None:intergenic
AATTGAGTTGTAGAGTGGAG+AGG 0.552148 1_4:-49491142 None:intergenic
TCCATGGATAATTAAAGAAG+TGG 0.555425 1_4:-49491910 None:intergenic
TTTGTCAACGGAAAGCCCTC+AGG 0.559746 1_4:+49492257 Msa0167570:CDS
GTGACACAATAGACATTCTG+TGG 0.563679 1_4:+49491005 Msa0167570:five_prime_UTR
AGTATATAATGCGGACTCCA+CGG 0.565595 1_4:+49492291 Msa0167570:CDS
TACTTGGCTTCAATTCCTGA+GGG 0.571164 1_4:-49492272 None:intergenic
AATATCTCCCTAGCTAATAG+AGG 0.573686 1_4:+49492670 Msa0167570:three_prime_UTR
CTATTTACCTGTTATCGTAG+TGG 0.578250 1_4:+49492647 Msa0167570:three_prime_UTR
TGCCATGTCAGCAACACCAA+TGG 0.579115 1_4:+49490919 Msa0167570:five_prime_UTR
TCTATAGGAAAGCAGTTACA+TGG 0.580466 1_4:-49492461 None:intergenic
CAGAGGACAAAAGAATAGAA+GGG 0.583900 1_4:-49492405 None:intergenic
AAGCTGACAAAATCAAAGGA+TGG 0.597295 1_4:+49492101 Msa0167570:CDS
CACCCACAAATAAGCTCAGT+AGG 0.597480 1_4:-49492623 None:intergenic
GTAAATGCTAAATTTGTCAA+CGG 0.597700 1_4:+49492245 Msa0167570:CDS
GACCCTGCTAGGATCCAAAA+GGG 0.605011 1_4:+49492765 Msa0167570:three_prime_UTR
AAAAGATAGAAGTAAAATTG+TGG 0.605819 1_4:-49491029 None:intergenic
CAAATGTTGACCATTGAATG+AGG 0.613868 1_4:-49491949 None:intergenic
ATCTCCCTAGCTAATAGAGG+AGG 0.620526 1_4:+49492673 Msa0167570:three_prime_UTR
TGCCGGTTATCATGATGGCG+GGG 0.623175 1_4:+49492024 Msa0167570:CDS
AAAGGATGGAACAAATGGCA+TGG 0.632758 1_4:+49492115 Msa0167570:CDS
GAAAACAAACTTCTTGACAG+AGG 0.633258 1_4:-49492422 None:intergenic
ATAATAAAAGAAAGCCGTAG+AGG 0.633863 1_4:-49492506 None:intergenic
ACGCTATAAGTTTACAACGT+CGG 0.636142 1_4:-49492890 None:intergenic
CAATCAGCAAATGATAGACG+TGG 0.641310 1_4:-49490892 None:intergenic
TTATGACAACTAGAGAAGCA+AGG 0.651832 1_4:+49491056 Msa0167570:five_prime_UTR
CATGCCGGTTATCATGATGG+CGG 0.658092 1_4:+49492022 Msa0167570:CDS
TGTGAAGCTGACAAAATCAA+AGG 0.662632 1_4:+49492097 Msa0167570:CDS
TTCTGAATTGAGTTGTAGAG+TGG 0.666148 1_4:-49491147 None:intergenic
ATGAACCTATCCCAGTCCCG+TGG 0.667895 1_4:-49492308 None:intergenic
TTTGTACCTGAGTATGAGCG+TGG 0.677678 1_4:-49491171 None:intergenic
TTGAAGCCAAGTATATAATG+CGG 0.690031 1_4:+49492282 Msa0167570:CDS
ATAGGAAAGCAGTTACATGG+TGG 0.743263 1_4:-49492458 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTATTATGATTAAAAA+AGG + chr1_4:49492518-49492537 Msa0167570:three_prime_UTR 10.0%
!!! TCTTTTATTATGATTAAAAA+AGG + chr1_4:49492518-49492537 Msa0167570:three_prime_UTR 10.0%
!! AAATAAACAAAACAAAAGAT+GGG + chr1_4:49491426-49491445 Msa0167570:intron 15.0%
!! AATAAATCCTTAATGATAAA+TGG - chr1_4:49492863-49492882 None:intergenic 15.0%
!! TGTATATCATTAATAAATAC+AGG + chr1_4:49492932-49492951 Msa0167570:three_prime_UTR 15.0%
!! AAATAAACAAAACAAAAGAT+GGG + chr1_4:49491426-49491445 Msa0167570:intron 15.0%
!! AATAAATCCTTAATGATAAA+TGG - chr1_4:49492863-49492882 None:intergenic 15.0%
!! TGTATATCATTAATAAATAC+AGG + chr1_4:49492932-49492951 Msa0167570:three_prime_UTR 15.0%
!! AAAAGATAGAAGTAAAATTG+TGG - chr1_4:49491032-49491051 None:intergenic 20.0%
!! GTAAATTCATAATATGAATC+AGG + chr1_4:49491325-49491344 Msa0167570:intron 20.0%
!! TTAATTTACAAGTCAACAAT+TGG - chr1_4:49491388-49491407 None:intergenic 20.0%
!!! CATCTTTTGTTTTGTTTATT+TGG - chr1_4:49491427-49491446 None:intergenic 20.0%
!! CAAATAAACAAAACAAAAGA+TGG + chr1_4:49491425-49491444 Msa0167570:intron 20.0%
!! AAAAGATAGAAGTAAAATTG+TGG - chr1_4:49491032-49491051 None:intergenic 20.0%
!! GTAAATTCATAATATGAATC+AGG + chr1_4:49491325-49491344 Msa0167570:intron 20.0%
!! TTAATTTACAAGTCAACAAT+TGG - chr1_4:49491388-49491407 None:intergenic 20.0%
!!! CATCTTTTGTTTTGTTTATT+TGG - chr1_4:49491427-49491446 None:intergenic 20.0%
!! CAAATAAACAAAACAAAAGA+TGG + chr1_4:49491425-49491444 Msa0167570:intron 20.0%
!!! CTTTGTTTGTTATTGTTTTG+TGG + chr1_4:49491213-49491232 Msa0167570:intron 25.0%
!!! ATGTTTTGAGAACTTATGTT+TGG + chr1_4:49491246-49491265 Msa0167570:intron 25.0%
!! ATGAATCAGGTTAACATTTT+TGG + chr1_4:49491338-49491357 Msa0167570:intron 25.0%
!! TGAATCAGGTTAACATTTTT+GGG + chr1_4:49491339-49491358 Msa0167570:intron 25.0%
! TGTTGTCAAGAAAAAAATGT+TGG - chr1_4:49491482-49491501 None:intergenic 25.0%
! TTATACTTGTACTAGAATTG+TGG + chr1_4:49491621-49491640 Msa0167570:intron 25.0%
! AGAGAATACTTGAAACTAAT+GGG - chr1_4:49491728-49491747 None:intergenic 25.0%
! TAGAGAATACTTGAAACTAA+TGG - chr1_4:49491729-49491748 None:intergenic 25.0%
! ATCATATGTTCAAGATTTCA+AGG - chr1_4:49491800-49491819 None:intergenic 25.0%
!!! GCATCACTTTTTATTTTCTA+TGG - chr1_4:49491841-49491860 None:intergenic 25.0%
!! AATTTAAGTTCAAACTTCCA+TGG - chr1_4:49491929-49491948 None:intergenic 25.0%
! AACTTAAATTCCTCATTCAA+TGG + chr1_4:49491939-49491958 Msa0167570:CDS 25.0%
!! CCTTGAATGAATTGAATTTT+GGG - chr1_4:49492053-49492072 None:intergenic 25.0%
!! TCCTTGAATGAATTGAATTT+TGG - chr1_4:49492054-49492073 None:intergenic 25.0%
!! TGGTTTTTATATGATTGATG+AGG + chr1_4:49492199-49492218 Msa0167570:CDS 25.0%
!! TTTTATATGATTGATGAGGA+AGG + chr1_4:49492203-49492222 Msa0167570:CDS 25.0%
! GTAAATGCTAAATTTGTCAA+CGG + chr1_4:49492245-49492264 Msa0167570:CDS 25.0%
!!! CTTTGTTTGTTATTGTTTTG+TGG + chr1_4:49491213-49491232 Msa0167570:intron 25.0%
!!! ATGTTTTGAGAACTTATGTT+TGG + chr1_4:49491246-49491265 Msa0167570:intron 25.0%
!! ATGAATCAGGTTAACATTTT+TGG + chr1_4:49491338-49491357 Msa0167570:intron 25.0%
!! TGAATCAGGTTAACATTTTT+GGG + chr1_4:49491339-49491358 Msa0167570:intron 25.0%
! TGTTGTCAAGAAAAAAATGT+TGG - chr1_4:49491482-49491501 None:intergenic 25.0%
! TTATACTTGTACTAGAATTG+TGG + chr1_4:49491621-49491640 Msa0167570:intron 25.0%
! AGAGAATACTTGAAACTAAT+GGG - chr1_4:49491728-49491747 None:intergenic 25.0%
! TAGAGAATACTTGAAACTAA+TGG - chr1_4:49491729-49491748 None:intergenic 25.0%
! ATCATATGTTCAAGATTTCA+AGG - chr1_4:49491800-49491819 None:intergenic 25.0%
!!! GCATCACTTTTTATTTTCTA+TGG - chr1_4:49491841-49491860 None:intergenic 25.0%
!! AATTTAAGTTCAAACTTCCA+TGG - chr1_4:49491929-49491948 None:intergenic 25.0%
! AACTTAAATTCCTCATTCAA+TGG + chr1_4:49491939-49491958 Msa0167570:CDS 25.0%
!! CCTTGAATGAATTGAATTTT+GGG - chr1_4:49492053-49492072 None:intergenic 25.0%
!! TCCTTGAATGAATTGAATTT+TGG - chr1_4:49492054-49492073 None:intergenic 25.0%
!! TGGTTTTTATATGATTGATG+AGG + chr1_4:49492199-49492218 Msa0167570:CDS 25.0%
!! TTTTATATGATTGATGAGGA+AGG + chr1_4:49492203-49492222 Msa0167570:CDS 25.0%
! GTAAATGCTAAATTTGTCAA+CGG + chr1_4:49492245-49492264 Msa0167570:CDS 25.0%
ACATTATCATCACAAGTGAA+TGG + chr1_4:49490974-49490993 Msa0167570:five_prime_UTR 30.0%
AAGTTCTCAAAACATTTCAC+AGG - chr1_4:49491241-49491260 None:intergenic 30.0%
ACTTATGTTTGGACATTGTT+TGG + chr1_4:49491257-49491276 Msa0167570:intron 30.0%
! GAATCAGGTTAACATTTTTG+GGG + chr1_4:49491340-49491359 Msa0167570:intron 30.0%
CAATTGGAGCAAACTATATA+AGG - chr1_4:49491372-49491391 None:intergenic 30.0%
!!! GTTTTGTTTATTTGGCATTC+TGG - chr1_4:49491419-49491438 None:intergenic 30.0%
TTCTTGCATTGTTCAGTATT+TGG + chr1_4:49491506-49491525 Msa0167570:intron 30.0%
TCCATGGATAATTAAAGAAG+TGG - chr1_4:49491913-49491932 None:intergenic 30.0%
!!! GGAGTTTTTTGAGTTATCAT+CGG - chr1_4:49491996-49492015 None:intergenic 30.0%
CCCAAAATTCAATTCATTCA+AGG + chr1_4:49492050-49492069 Msa0167570:CDS 30.0%
AAATCAAAGGATGGAACAAA+TGG + chr1_4:49492110-49492129 Msa0167570:CDS 30.0%
CATTTACATCAACAGATTGA+AGG - chr1_4:49492232-49492251 None:intergenic 30.0%
TTGAAGCCAAGTATATAATG+CGG + chr1_4:49492282-49492301 Msa0167570:CDS 30.0%
ATAATAAAAGAAAGCCGTAG+AGG - chr1_4:49492509-49492528 None:intergenic 30.0%
! AAAAGGCTAGAGTTTTTGTT+AGG + chr1_4:49492535-49492554 Msa0167570:three_prime_UTR 30.0%
CATTCCAATTCGATAAAATC+TGG - chr1_4:49492726-49492745 None:intergenic 30.0%
!! ACTAGTGCCATTTATCATTA+AGG + chr1_4:49492853-49492872 Msa0167570:three_prime_UTR 30.0%
ACATTATCATCACAAGTGAA+TGG + chr1_4:49490974-49490993 Msa0167570:five_prime_UTR 30.0%
AAGTTCTCAAAACATTTCAC+AGG - chr1_4:49491241-49491260 None:intergenic 30.0%
ACTTATGTTTGGACATTGTT+TGG + chr1_4:49491257-49491276 Msa0167570:intron 30.0%
! GAATCAGGTTAACATTTTTG+GGG + chr1_4:49491340-49491359 Msa0167570:intron 30.0%
CAATTGGAGCAAACTATATA+AGG - chr1_4:49491372-49491391 None:intergenic 30.0%
!!! GTTTTGTTTATTTGGCATTC+TGG - chr1_4:49491419-49491438 None:intergenic 30.0%
TTCTTGCATTGTTCAGTATT+TGG + chr1_4:49491506-49491525 Msa0167570:intron 30.0%
TCCATGGATAATTAAAGAAG+TGG - chr1_4:49491913-49491932 None:intergenic 30.0%
!!! GGAGTTTTTTGAGTTATCAT+CGG - chr1_4:49491996-49492015 None:intergenic 30.0%
CCCAAAATTCAATTCATTCA+AGG + chr1_4:49492050-49492069 Msa0167570:CDS 30.0%
AAATCAAAGGATGGAACAAA+TGG + chr1_4:49492110-49492129 Msa0167570:CDS 30.0%
CATTTACATCAACAGATTGA+AGG - chr1_4:49492232-49492251 None:intergenic 30.0%
TTGAAGCCAAGTATATAATG+CGG + chr1_4:49492282-49492301 Msa0167570:CDS 30.0%
ATAATAAAAGAAAGCCGTAG+AGG - chr1_4:49492509-49492528 None:intergenic 30.0%
! AAAAGGCTAGAGTTTTTGTT+AGG + chr1_4:49492535-49492554 Msa0167570:three_prime_UTR 30.0%
CATTCCAATTCGATAAAATC+TGG - chr1_4:49492726-49492745 None:intergenic 30.0%
!! ACTAGTGCCATTTATCATTA+AGG + chr1_4:49492853-49492872 Msa0167570:three_prime_UTR 30.0%
TCAGATTTGTGACAATCCAT+TGG - chr1_4:49490938-49490957 None:intergenic 35.0%
! ATGGATTGTCACAAATCTGA+TGG + chr1_4:49490938-49490957 Msa0167570:five_prime_UTR 35.0%
TTATGACAACTAGAGAAGCA+AGG + chr1_4:49491056-49491075 Msa0167570:five_prime_UTR 35.0%
! AACTGCTTCTCTCTTTTTCT+TGG + chr1_4:49491089-49491108 Msa0167570:five_prime_UTR 35.0%
! TTCTCTCTTTTTCTTGGCAA+TGG + chr1_4:49491095-49491114 Msa0167570:exon 35.0%
! TTCTGAATTGAGTTGTAGAG+TGG - chr1_4:49491150-49491169 None:intergenic 35.0%
!!! GGTTAACATTTTTGGGGTTA+AGG + chr1_4:49491346-49491365 Msa0167570:intron 35.0%
GAACATCATACATACCATCA+GGG - chr1_4:49491557-49491576 None:intergenic 35.0%
AGAACATCATACATACCATC+AGG - chr1_4:49491558-49491577 None:intergenic 35.0%
GATGGTATGTATGATGTTCT+TGG + chr1_4:49491558-49491577 Msa0167570:intron 35.0%
TGTTCAAGATTTCAAGGTCA+GGG - chr1_4:49491794-49491813 None:intergenic 35.0%
ATGTTCAAGATTTCAAGGTC+AGG - chr1_4:49491795-49491814 None:intergenic 35.0%
GCCACTTCTTTAATTATCCA+TGG + chr1_4:49491909-49491928 Msa0167570:intron 35.0%
CAAATGTTGACCATTGAATG+AGG - chr1_4:49491952-49491971 None:intergenic 35.0%
TGTGAAGCTGACAAAATCAA+AGG + chr1_4:49492097-49492116 Msa0167570:CDS 35.0%
AAGCTGACAAAATCAAAGGA+TGG + chr1_4:49492101-49492120 Msa0167570:CDS 35.0%
CCAGAAGAATCAAAAACTGA+GGG - chr1_4:49492161-49492180 None:intergenic 35.0%
TCCAGAAGAATCAAAAACTG+AGG - chr1_4:49492162-49492181 None:intergenic 35.0%
! TTTGATTCTTCTGGAGAAGT+AGG + chr1_4:49492167-49492186 Msa0167570:CDS 35.0%
CAGAGGACAAAAGAATAGAA+GGG - chr1_4:49492408-49492427 None:intergenic 35.0%
ACAGAGGACAAAAGAATAGA+AGG - chr1_4:49492409-49492428 None:intergenic 35.0%
GAAAACAAACTTCTTGACAG+AGG - chr1_4:49492425-49492444 None:intergenic 35.0%
TCTATAGGAAAGCAGTTACA+TGG - chr1_4:49492464-49492483 None:intergenic 35.0%
!! CAATAAGCTTTGGGATCTAT+AGG - chr1_4:49492479-49492498 None:intergenic 35.0%
GGTGTAGAACAATAAGCTTT+GGG - chr1_4:49492488-49492507 None:intergenic 35.0%
AGGTGTAGAACAATAAGCTT+TGG - chr1_4:49492489-49492508 None:intergenic 35.0%
CTTATTGTTCTACACCTCTA+CGG + chr1_4:49492492-49492511 Msa0167570:three_prime_UTR 35.0%
TTTCCTACTGAGCTTATTTG+TGG + chr1_4:49492620-49492639 Msa0167570:three_prime_UTR 35.0%
TTCCTACTGAGCTTATTTGT+GGG + chr1_4:49492621-49492640 Msa0167570:three_prime_UTR 35.0%
CTATTTACCTGTTATCGTAG+TGG + chr1_4:49492647-49492666 Msa0167570:three_prime_UTR 35.0%
AGATATTCCACTACGATAAC+AGG - chr1_4:49492657-49492676 None:intergenic 35.0%
AATATCTCCCTAGCTAATAG+AGG + chr1_4:49492670-49492689 Msa0167570:three_prime_UTR 35.0%
ATTTCCTCCTCTATTAGCTA+GGG - chr1_4:49492680-49492699 None:intergenic 35.0%
TATTTCCTCCTCTATTAGCT+AGG - chr1_4:49492681-49492700 None:intergenic 35.0%
! CTAGCCAGATTTTATCGAAT+TGG + chr1_4:49492719-49492738 Msa0167570:three_prime_UTR 35.0%
ACGCTATAAGTTTACAACGT+CGG - chr1_4:49492893-49492912 None:intergenic 35.0%
TCAGATTTGTGACAATCCAT+TGG - chr1_4:49490938-49490957 None:intergenic 35.0%
! ATGGATTGTCACAAATCTGA+TGG + chr1_4:49490938-49490957 Msa0167570:five_prime_UTR 35.0%
TTATGACAACTAGAGAAGCA+AGG + chr1_4:49491056-49491075 Msa0167570:five_prime_UTR 35.0%
! AACTGCTTCTCTCTTTTTCT+TGG + chr1_4:49491089-49491108 Msa0167570:five_prime_UTR 35.0%
! TTCTCTCTTTTTCTTGGCAA+TGG + chr1_4:49491095-49491114 Msa0167570:exon 35.0%
! TTCTGAATTGAGTTGTAGAG+TGG - chr1_4:49491150-49491169 None:intergenic 35.0%
!!! GGTTAACATTTTTGGGGTTA+AGG + chr1_4:49491346-49491365 Msa0167570:intron 35.0%
GAACATCATACATACCATCA+GGG - chr1_4:49491557-49491576 None:intergenic 35.0%
AGAACATCATACATACCATC+AGG - chr1_4:49491558-49491577 None:intergenic 35.0%
GATGGTATGTATGATGTTCT+TGG + chr1_4:49491558-49491577 Msa0167570:intron 35.0%
TGTTCAAGATTTCAAGGTCA+GGG - chr1_4:49491794-49491813 None:intergenic 35.0%
ATGTTCAAGATTTCAAGGTC+AGG - chr1_4:49491795-49491814 None:intergenic 35.0%
GCCACTTCTTTAATTATCCA+TGG + chr1_4:49491909-49491928 Msa0167570:intron 35.0%
CAAATGTTGACCATTGAATG+AGG - chr1_4:49491952-49491971 None:intergenic 35.0%
TGTGAAGCTGACAAAATCAA+AGG + chr1_4:49492097-49492116 Msa0167570:CDS 35.0%
AAGCTGACAAAATCAAAGGA+TGG + chr1_4:49492101-49492120 Msa0167570:CDS 35.0%
CCAGAAGAATCAAAAACTGA+GGG - chr1_4:49492161-49492180 None:intergenic 35.0%
TCCAGAAGAATCAAAAACTG+AGG - chr1_4:49492162-49492181 None:intergenic 35.0%
! TTTGATTCTTCTGGAGAAGT+AGG + chr1_4:49492167-49492186 Msa0167570:CDS 35.0%
CAGAGGACAAAAGAATAGAA+GGG - chr1_4:49492408-49492427 None:intergenic 35.0%
ACAGAGGACAAAAGAATAGA+AGG - chr1_4:49492409-49492428 None:intergenic 35.0%
GAAAACAAACTTCTTGACAG+AGG - chr1_4:49492425-49492444 None:intergenic 35.0%
TCTATAGGAAAGCAGTTACA+TGG - chr1_4:49492464-49492483 None:intergenic 35.0%
!! CAATAAGCTTTGGGATCTAT+AGG - chr1_4:49492479-49492498 None:intergenic 35.0%
GGTGTAGAACAATAAGCTTT+GGG - chr1_4:49492488-49492507 None:intergenic 35.0%
AGGTGTAGAACAATAAGCTT+TGG - chr1_4:49492489-49492508 None:intergenic 35.0%
CTTATTGTTCTACACCTCTA+CGG + chr1_4:49492492-49492511 Msa0167570:three_prime_UTR 35.0%
TTTCCTACTGAGCTTATTTG+TGG + chr1_4:49492620-49492639 Msa0167570:three_prime_UTR 35.0%
TTCCTACTGAGCTTATTTGT+GGG + chr1_4:49492621-49492640 Msa0167570:three_prime_UTR 35.0%
CTATTTACCTGTTATCGTAG+TGG + chr1_4:49492647-49492666 Msa0167570:three_prime_UTR 35.0%
AGATATTCCACTACGATAAC+AGG - chr1_4:49492657-49492676 None:intergenic 35.0%
AATATCTCCCTAGCTAATAG+AGG + chr1_4:49492670-49492689 Msa0167570:three_prime_UTR 35.0%
ATTTCCTCCTCTATTAGCTA+GGG - chr1_4:49492680-49492699 None:intergenic 35.0%
TATTTCCTCCTCTATTAGCT+AGG - chr1_4:49492681-49492700 None:intergenic 35.0%
! CTAGCCAGATTTTATCGAAT+TGG + chr1_4:49492719-49492738 Msa0167570:three_prime_UTR 35.0%
ACGCTATAAGTTTACAACGT+CGG - chr1_4:49492893-49492912 None:intergenic 35.0%
CAATCAGCAAATGATAGACG+TGG - chr1_4:49490895-49490914 None:intergenic 40.0%
GTGACACAATAGACATTCTG+TGG + chr1_4:49491005-49491024 Msa0167570:five_prime_UTR 40.0%
! AATTGAGTTGTAGAGTGGAG+AGG - chr1_4:49491145-49491164 None:intergenic 40.0%
TAATATAGCTTCCACCCTGA+TGG + chr1_4:49491540-49491559 Msa0167570:intron 40.0%
ATGTTCTTGGCAACACTCTA+TGG + chr1_4:49491571-49491590 Msa0167570:intron 40.0%
CAACACTCTATGGAACAGAA+TGG + chr1_4:49491581-49491600 Msa0167570:intron 40.0%
TCTATGGAACAGAATGGCAT+TGG + chr1_4:49491587-49491606 Msa0167570:intron 40.0%
CTATGGAACAGAATGGCATT+GGG + chr1_4:49491588-49491607 Msa0167570:intron 40.0%
GTTCAAGATTTCAAGGTCAG+GGG - chr1_4:49491793-49491812 None:intergenic 40.0%
ATTTGCATGTGCCAAGTTTG+AGG + chr1_4:49491967-49491986 Msa0167570:CDS 40.0%
ATCATCGGTAACCTCAAACT+TGG - chr1_4:49491981-49492000 None:intergenic 40.0%
! GATTTTGTCAGCTTCACATC+AGG - chr1_4:49492095-49492114 None:intergenic 40.0%
AAAGGATGGAACAAATGGCA+TGG + chr1_4:49492115-49492134 Msa0167570:CDS 40.0%
!! CCCTCAGTTTTTGATTCTTC+TGG + chr1_4:49492158-49492177 Msa0167570:CDS 40.0%
TACTTGGCTTCAATTCCTGA+GGG - chr1_4:49492275-49492294 None:intergenic 40.0%
ATACTTGGCTTCAATTCCTG+AGG - chr1_4:49492276-49492295 None:intergenic 40.0%
TGGAGTCCGCATTATATACT+TGG - chr1_4:49492291-49492310 None:intergenic 40.0%
AGTATATAATGCGGACTCCA+CGG + chr1_4:49492291-49492310 Msa0167570:CDS 40.0%
GGATAGGTTCATGAGATTCA+TGG + chr1_4:49492319-49492338 Msa0167570:CDS 40.0%
ATAGGAAAGCAGTTACATGG+TGG - chr1_4:49492461-49492480 None:intergenic 40.0%
! TTTAGTGGTGAAGTCCCTTT+TGG - chr1_4:49492782-49492801 None:intergenic 40.0%
AAAGGGACTTCACCACTAAA+AGG + chr1_4:49492782-49492801 Msa0167570:three_prime_UTR 40.0%
AAGGGACTTCACCACTAAAA+GGG + chr1_4:49492783-49492802 Msa0167570:three_prime_UTR 40.0%
! GAACTCAACATCCCTTTTAG+TGG - chr1_4:49492797-49492816 None:intergenic 40.0%
ATGGCACTAGTAGAGATCAT+TGG - chr1_4:49492844-49492863 None:intergenic 40.0%
CAATCAGCAAATGATAGACG+TGG - chr1_4:49490895-49490914 None:intergenic 40.0%
GTGACACAATAGACATTCTG+TGG + chr1_4:49491005-49491024 Msa0167570:five_prime_UTR 40.0%
! AATTGAGTTGTAGAGTGGAG+AGG - chr1_4:49491145-49491164 None:intergenic 40.0%
TAATATAGCTTCCACCCTGA+TGG + chr1_4:49491540-49491559 Msa0167570:intron 40.0%
ATGTTCTTGGCAACACTCTA+TGG + chr1_4:49491571-49491590 Msa0167570:intron 40.0%
CAACACTCTATGGAACAGAA+TGG + chr1_4:49491581-49491600 Msa0167570:intron 40.0%
TCTATGGAACAGAATGGCAT+TGG + chr1_4:49491587-49491606 Msa0167570:intron 40.0%
CTATGGAACAGAATGGCATT+GGG + chr1_4:49491588-49491607 Msa0167570:intron 40.0%
GTTCAAGATTTCAAGGTCAG+GGG - chr1_4:49491793-49491812 None:intergenic 40.0%
ATTTGCATGTGCCAAGTTTG+AGG + chr1_4:49491967-49491986 Msa0167570:CDS 40.0%
ATCATCGGTAACCTCAAACT+TGG - chr1_4:49491981-49492000 None:intergenic 40.0%
! GATTTTGTCAGCTTCACATC+AGG - chr1_4:49492095-49492114 None:intergenic 40.0%
AAAGGATGGAACAAATGGCA+TGG + chr1_4:49492115-49492134 Msa0167570:CDS 40.0%
!! CCCTCAGTTTTTGATTCTTC+TGG + chr1_4:49492158-49492177 Msa0167570:CDS 40.0%
TACTTGGCTTCAATTCCTGA+GGG - chr1_4:49492275-49492294 None:intergenic 40.0%
ATACTTGGCTTCAATTCCTG+AGG - chr1_4:49492276-49492295 None:intergenic 40.0%
TGGAGTCCGCATTATATACT+TGG - chr1_4:49492291-49492310 None:intergenic 40.0%
AGTATATAATGCGGACTCCA+CGG + chr1_4:49492291-49492310 Msa0167570:CDS 40.0%
GGATAGGTTCATGAGATTCA+TGG + chr1_4:49492319-49492338 Msa0167570:CDS 40.0%
ATAGGAAAGCAGTTACATGG+TGG - chr1_4:49492461-49492480 None:intergenic 40.0%
! TTTAGTGGTGAAGTCCCTTT+TGG - chr1_4:49492782-49492801 None:intergenic 40.0%
AAAGGGACTTCACCACTAAA+AGG + chr1_4:49492782-49492801 Msa0167570:three_prime_UTR 40.0%
AAGGGACTTCACCACTAAAA+GGG + chr1_4:49492783-49492802 Msa0167570:three_prime_UTR 40.0%
! GAACTCAACATCCCTTTTAG+TGG - chr1_4:49492797-49492816 None:intergenic 40.0%
ATGGCACTAGTAGAGATCAT+TGG - chr1_4:49492844-49492863 None:intergenic 40.0%
!! ATCCATTGGTGTTGCTGACA+TGG - chr1_4:49490924-49490943 None:intergenic 45.0%
TTTGTACCTGAGTATGAGCG+TGG - chr1_4:49491174-49491193 None:intergenic 45.0%
CATCATACATACCATCAGGG+TGG - chr1_4:49491554-49491573 None:intergenic 45.0%
ATTTCAAGGTCAGGGGTCAA+GGG - chr1_4:49491786-49491805 None:intergenic 45.0%
AAAAACTCCCATGCACATGC+CGG + chr1_4:49492007-49492026 Msa0167570:CDS 45.0%
ATGATAACCGGCATGTGCAT+GGG - chr1_4:49492017-49492036 None:intergenic 45.0%
CAAATGGCATGGCTATCTTC+AGG + chr1_4:49492126-49492145 Msa0167570:CDS 45.0%
GTATATAATGCGGACTCCAC+GGG + chr1_4:49492292-49492311 Msa0167570:CDS 45.0%
GAGCGATACTCTGATGCTAA+TGG + chr1_4:49492341-49492360 Msa0167570:CDS 45.0%
CACCCACAAATAAGCTCAGT+AGG - chr1_4:49492626-49492645 None:intergenic 45.0%
ATCTCCCTAGCTAATAGAGG+AGG + chr1_4:49492673-49492692 Msa0167570:three_prime_UTR 45.0%
TTTGAGTACTAGACCCTGCT+AGG + chr1_4:49492754-49492773 Msa0167570:three_prime_UTR 45.0%
!! ATCCATTGGTGTTGCTGACA+TGG - chr1_4:49490924-49490943 None:intergenic 45.0%
TTTGTACCTGAGTATGAGCG+TGG - chr1_4:49491174-49491193 None:intergenic 45.0%
CATCATACATACCATCAGGG+TGG - chr1_4:49491554-49491573 None:intergenic 45.0%
ATTTCAAGGTCAGGGGTCAA+GGG - chr1_4:49491786-49491805 None:intergenic 45.0%
AAAAACTCCCATGCACATGC+CGG + chr1_4:49492007-49492026 Msa0167570:CDS 45.0%
ATGATAACCGGCATGTGCAT+GGG - chr1_4:49492017-49492036 None:intergenic 45.0%
CAAATGGCATGGCTATCTTC+AGG + chr1_4:49492126-49492145 Msa0167570:CDS 45.0%
GTATATAATGCGGACTCCAC+GGG + chr1_4:49492292-49492311 Msa0167570:CDS 45.0%
GAGCGATACTCTGATGCTAA+TGG + chr1_4:49492341-49492360 Msa0167570:CDS 45.0%
CACCCACAAATAAGCTCAGT+AGG - chr1_4:49492626-49492645 None:intergenic 45.0%
ATCTCCCTAGCTAATAGAGG+AGG + chr1_4:49492673-49492692 Msa0167570:three_prime_UTR 45.0%
TTTGAGTACTAGACCCTGCT+AGG + chr1_4:49492754-49492773 Msa0167570:three_prime_UTR 45.0%
TGCCATGTCAGCAACACCAA+TGG + chr1_4:49490919-49490938 Msa0167570:five_prime_UTR 50.0%
GATTTCAAGGTCAGGGGTCA+AGG - chr1_4:49491787-49491806 None:intergenic 50.0%
CATGATAACCGGCATGTGCA+TGG - chr1_4:49492018-49492037 None:intergenic 50.0%
! GCACATGCCGGTTATCATGA+TGG + chr1_4:49492019-49492038 Msa0167570:CDS 50.0%
! CATGCCGGTTATCATGATGG+CGG + chr1_4:49492022-49492041 Msa0167570:CDS 50.0%
! ATGCCGGTTATCATGATGGC+GGG + chr1_4:49492023-49492042 Msa0167570:CDS 50.0%
TTCCCCGCCATCATGATAAC+CGG - chr1_4:49492029-49492048 None:intergenic 50.0%
GGAGAAGTAGGCGACATTAC+TGG + chr1_4:49492179-49492198 Msa0167570:CDS 50.0%
TTTGTCAACGGAAAGCCCTC+AGG + chr1_4:49492257-49492276 Msa0167570:CDS 50.0%
AGACCCTGCTAGGATCCAAA+AGG + chr1_4:49492764-49492783 Msa0167570:three_prime_UTR 50.0%
GACCCTGCTAGGATCCAAAA+GGG + chr1_4:49492765-49492784 Msa0167570:three_prime_UTR 50.0%
! GTCCCTTTTGGATCCTAGCA+GGG - chr1_4:49492770-49492789 None:intergenic 50.0%
! AGTCCCTTTTGGATCCTAGC+AGG - chr1_4:49492771-49492790 None:intergenic 50.0%
TGCCATGTCAGCAACACCAA+TGG + chr1_4:49490919-49490938 Msa0167570:five_prime_UTR 50.0%
GATTTCAAGGTCAGGGGTCA+AGG - chr1_4:49491787-49491806 None:intergenic 50.0%
CATGATAACCGGCATGTGCA+TGG - chr1_4:49492018-49492037 None:intergenic 50.0%
! GCACATGCCGGTTATCATGA+TGG + chr1_4:49492019-49492038 Msa0167570:CDS 50.0%
! CATGCCGGTTATCATGATGG+CGG + chr1_4:49492022-49492041 Msa0167570:CDS 50.0%
! ATGCCGGTTATCATGATGGC+GGG + chr1_4:49492023-49492042 Msa0167570:CDS 50.0%
TTCCCCGCCATCATGATAAC+CGG - chr1_4:49492029-49492048 None:intergenic 50.0%
GGAGAAGTAGGCGACATTAC+TGG + chr1_4:49492179-49492198 Msa0167570:CDS 50.0%
TTTGTCAACGGAAAGCCCTC+AGG + chr1_4:49492257-49492276 Msa0167570:CDS 50.0%
AGACCCTGCTAGGATCCAAA+AGG + chr1_4:49492764-49492783 Msa0167570:three_prime_UTR 50.0%
GACCCTGCTAGGATCCAAAA+GGG + chr1_4:49492765-49492784 Msa0167570:three_prime_UTR 50.0%
! GTCCCTTTTGGATCCTAGCA+GGG - chr1_4:49492770-49492789 None:intergenic 50.0%
! AGTCCCTTTTGGATCCTAGC+AGG - chr1_4:49492771-49492790 None:intergenic 50.0%
CAGAAGCCACGCTCATACTC+AGG + chr1_4:49491165-49491184 Msa0167570:CDS 55.0%
! TGCCGGTTATCATGATGGCG+GGG + chr1_4:49492024-49492043 Msa0167570:CDS 55.0%
ATGAACCTATCCCAGTCCCG+TGG - chr1_4:49492311-49492330 None:intergenic 55.0%
CAGAAGCCACGCTCATACTC+AGG + chr1_4:49491165-49491184 Msa0167570:CDS 55.0%
! TGCCGGTTATCATGATGGCG+GGG + chr1_4:49492024-49492043 Msa0167570:CDS 55.0%
ATGAACCTATCCCAGTCCCG+TGG - chr1_4:49492311-49492330 None:intergenic 55.0%
TAATGCGGACTCCACGGGAC+TGG + chr1_4:49492297-49492316 Msa0167570:CDS 60.0%
AATGCGGACTCCACGGGACT+GGG + chr1_4:49492298-49492317 Msa0167570:CDS 60.0%
TAATGCGGACTCCACGGGAC+TGG + chr1_4:49492297-49492316 Msa0167570:CDS 60.0%
AATGCGGACTCCACGGGACT+GGG + chr1_4:49492298-49492317 Msa0167570:CDS 60.0%
GGACTCCACGGGACTGGGAT+AGG + chr1_4:49492303-49492322 Msa0167570:CDS 65.0%
GGACTCCACGGGACTGGGAT+AGG + chr1_4:49492303-49492322 Msa0167570:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 49490891 49492968 49490891 ID=Msa0167570;Name=Msa0167570
chr1_4 mRNA 49490891 49492968 49490891 ID=Msa0167570-mRNA-1;Parent=Msa0167570;Name=Msa0167570-mRNA-1;_AED=0.15;_eAED=0.15;_QI=223|1|1|1|1|1|2|583|182
chr1_4 exon 49490891 49491186 49490891 ID=Msa0167570-mRNA-1:exon:14594;Parent=Msa0167570-mRNA-1
chr1_4 exon 49491910 49492968 49491910 ID=Msa0167570-mRNA-1:exon:14595;Parent=Msa0167570-mRNA-1
chr1_4 five_prime_UTR 49490891 49491113 49490891 ID=Msa0167570-mRNA-1:five_prime_utr;Parent=Msa0167570-mRNA-1
chr1_4 CDS 49491114 49491186 49491114 ID=Msa0167570-mRNA-1:cds;Parent=Msa0167570-mRNA-1
chr1_4 CDS 49491910 49492385 49491910 ID=Msa0167570-mRNA-1:cds;Parent=Msa0167570-mRNA-1
chr1_4 three_prime_UTR 49492386 49492968 49492386 ID=Msa0167570-mRNA-1:three_prime_utr;Parent=Msa0167570-mRNA-1
Gene Sequence

>Msa0167570

ATGGCAACTATGCACTCTCTTGCATTCTCCTCTCCACTCTACAACTCAATTCAGAAGCCACGCTCATACTCAGCCACTTCTTTAATTATCCATGGAAGTTTGAACTTAAATTCCTCATTCAATGGTCAACATTTGCATGTGCCAAGTTTGAGGTTACCGATGATAACTCAAAAAACTCCCATGCACATGCCGGTTATCATGATGGCGGGGAAGCCCAAAATTCAATTCATTCAAGGAACTGATGAACTGACAATACCTGATGTGAAGCTGACAAAATCAAAGGATGGAACAAATGGCATGGCTATCTTCAGGTTTGATCAACCCTCAGTTTTTGATTCTTCTGGAGAAGTAGGCGACATTACTGGTTTTTATATGATTGATGAGGAAGGAGTCCTTCAATCTGTTGATGTAAATGCTAAATTTGTCAACGGAAAGCCCTCAGGAATTGAAGCCAAGTATATAATGCGGACTCCACGGGACTGGGATAGGTTCATGAGATTCATGGAGCGATACTCTGATGCTAATGGTTTGCAATTCATAAAATATTGA

Protein sequence

>Msa0167570

MATMHSLAFSSPLYNSIQKPRSYSATSLIIHGSLNLNSSFNGQHLHVPSLRLPMITQKTPMHMPVIMMAGKPKIQFIQGTDELTIPDVKLTKSKDGTNGMAIFRFDQPSVFDSSGEVGDITGFYMIDEEGVLQSVDVNAKFVNGKPSGIEAKYIMRTPRDWDRFMRFMERYSDANGLQFIKY*