AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075080 MtrunA17_Chr1g0183221 99.451 182 1 0 1 182 1 182 1.41e-135 376
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075080 AT4G28660.1 68.966 145 45 0 37 181 37 181 5.57e-72 215
Msa0075080 AT4G28660.2 68.966 145 45 0 37 181 52 196 1.38e-71 215

Find 81 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGAATGAATTGAATTT+TGG 0.043355 1_2:+50149438 None:intergenic
ACTAGTGCCATTTATCATTA+AGG 0.216833 1_2:-50148638 Msa0075080:three_prime_UTR
AATAAATCCTTAATGATAAA+TGG 0.272615 1_2:+50148631 None:intergenic
AAAGGGACTTCACCACAAAA+AGG 0.315286 1_2:-50148707 Msa0075080:three_prime_UTR
ACAGAGGACAAAAGAATAGA+AGG 0.342749 1_2:+50149083 None:intergenic
CAATAAGCTTTGGGATCTAT+AGG 0.360359 1_2:+50149013 None:intergenic
GGAGAAGTAGGCGACATTAC+TGG 0.365446 1_2:-50149310 Msa0075080:CDS
CCCAAAATTCAATTCATTCA+AGG 0.375868 1_2:-50149439 Msa0075080:CDS
TAGAAGACAACTACTAGAAA+AGG 0.387064 1_2:+50148531 None:intergenic
TTTCCTACTGAACTTATTTG+TGG 0.394115 1_2:-50148869 Msa0075080:three_prime_UTR
TTCCTACTGAACTTATTTGT+GGG 0.394365 1_2:-50148868 Msa0075080:three_prime_UTR
TGTATATCATTAATAAATAC+AGG 0.395234 1_2:-50148559 Msa0075080:three_prime_UTR
AGATATTCTACTACGATAAC+AGG 0.401771 1_2:+50148835 None:intergenic
AACTTAAATTCCTCATTCAA+TGG 0.412356 1_2:-50149550 Msa0075080:CDS
CATTCCAATTCGATAAAATC+TGG 0.412583 1_2:+50148766 None:intergenic
TTCCCCGCCATCATGATAAC+CGG 0.430224 1_2:+50149463 None:intergenic
TGGAGTCCGCATTATATACT+TGG 0.434350 1_2:+50149201 None:intergenic
CAAATGGCATGGCTATCTTC+AGG 0.434591 1_2:-50149363 Msa0075080:CDS
AGGTGTAGAACAATAAGCTT+TGG 0.436512 1_2:+50149003 None:intergenic
ATTTGCATGTGCCAAGTTTG+AGG 0.436765 1_2:-50149522 Msa0075080:CDS
TAATGCGGACTCCACGGGAC+TGG 0.442232 1_2:-50149192 Msa0075080:CDS
AAATCAAAGGATGGAACAAA+TGG 0.447952 1_2:-50149379 Msa0075080:CDS
TTTGATTCTTCTGGAGAAGT+AGG 0.453284 1_2:-50149322 Msa0075080:CDS
GGATAGGTTCATGAGATTCA+TGG 0.460311 1_2:-50149170 Msa0075080:CDS
TATTTCCTCCTCTATTAGCT+AGG 0.463738 1_2:+50148811 None:intergenic
CATTTACATCAACAGATTGA+AGG 0.465513 1_2:+50149260 None:intergenic
GCCACTTCTTTAATTATCCA+TGG 0.476745 1_2:-50149580 Msa0075080:CDS
GAGCGATACTCTGATGCTAA+TGG 0.480616 1_2:-50149148 Msa0075080:CDS
GGTGTAGAACAATAAGCTTT+GGG 0.488921 1_2:+50149004 None:intergenic
AATTTAAGTTCAAACTTCCA+TGG 0.492114 1_2:+50149563 None:intergenic
CATGATAACCGGCTTGTGCA+TGG 0.501061 1_2:+50149474 None:intergenic
AGACCCTGCTAGGATCCAAA+AGG 0.506528 1_2:-50148725 Msa0075080:three_prime_UTR
AAGCCGGTTATCATGATGGC+GGG 0.509540 1_2:-50149466 Msa0075080:CDS
CAGAAGCCACGCTCATACTC+AGG 0.512959 1_2:-50150955 Msa0075080:intron
CTTATTGTTCTACACCTCTA+CGG 0.516117 1_2:-50148997 Msa0075080:three_prime_UTR
AATGCGGACTCCACGGGACT+GGG 0.524053 1_2:-50149191 Msa0075080:CDS
ATGGATTGTCACAAATCTGA+TGG 0.530234 1_2:-50151182 Msa0075080:five_prime_UTR
GGACTCCACGGGACTGGGAT+AGG 0.532501 1_2:-50149186 Msa0075080:CDS
ATCCATTGCTGTTGCTGACA+TGG 0.534502 1_2:+50151199 None:intergenic
ACATTATCATCACAAGTGAA+TGG 0.534967 1_2:-50151146 Msa0075080:five_prime_UTR
AGAAGACAACTACTAGAAAA+GGG 0.537943 1_2:+50148532 None:intergenic
GTATATAATGCGGACTCCAC+GGG 0.541871 1_2:-50149197 Msa0075080:CDS
TTTGAGTACTAGACCCTGCT+AGG 0.544015 1_2:-50148735 Msa0075080:three_prime_UTR
ATGATAACCGGCTTGTGCAT+GGG 0.544699 1_2:+50149475 None:intergenic
ATACTTGGCTTCAATTCCTG+AGG 0.546032 1_2:+50149216 None:intergenic
ATCATCGGTAACCTCAAACT+TGG 0.546137 1_2:+50149511 None:intergenic
ATTTCCTCCTCTATTAGCTA+GGG 0.550628 1_2:+50148812 None:intergenic
AATTGAGTTGTAGAGTGGAG+AGG 0.552148 1_2:+50150978 None:intergenic
TCCATGGATAATTAAAGAAG+TGG 0.555425 1_2:+50149579 None:intergenic
GCACAAGCCGGTTATCATGA+TGG 0.557455 1_2:-50149470 Msa0075080:CDS
AATATCTCCCTAGCTAATAG+AGG 0.557674 1_2:-50148819 Msa0075080:three_prime_UTR
TTTGTCAACGGAAAGCCCTC+AGG 0.559746 1_2:-50149232 Msa0075080:CDS
ATGGCACTAGTAGAGATCAT+TGG 0.560532 1_2:+50148650 None:intergenic
AGTATATAATGCGGACTCCA+CGG 0.565595 1_2:-50149198 Msa0075080:CDS
TGCCATGTCAGCAACAGCAA+TGG 0.569312 1_2:-50151201 Msa0075080:five_prime_UTR
TACTTGGCTTCAATTCCTGA+GGG 0.571164 1_2:+50149217 None:intergenic
TCTATAGGAAAGCAGTTACA+TGG 0.580466 1_2:+50149028 None:intergenic
GTGACACAATAGGCATTCTG+TGG 0.582812 1_2:-50151115 Msa0075080:five_prime_UTR
CAGAGGACAAAAGAATAGAA+GGG 0.583900 1_2:+50149084 None:intergenic
GGCTGTGTTTGTGACACAAT+AGG 0.587297 1_2:-50151125 Msa0075080:five_prime_UTR
AAGCTGACAAAATCAAAGGA+TGG 0.597295 1_2:-50149388 Msa0075080:CDS
GTAAATGCTAAATTTGTCAA+CGG 0.597700 1_2:-50149244 Msa0075080:CDS
TTATGACAACTAGAGAAGCT+AGG 0.600733 1_2:-50151064 Msa0075080:five_prime_UTR
GACCCTGCTAGGATCCAAAA+GGG 0.605011 1_2:-50148724 Msa0075080:three_prime_UTR
AAAAGATAGAAGTAAAATTG+TGG 0.605819 1_2:+50151091 None:intergenic
CAAATGTTGACCATTGAATG+AGG 0.613868 1_2:+50149540 None:intergenic
ATCTCCCTAGCTAATAGAGG+AGG 0.620526 1_2:-50148816 Msa0075080:three_prime_UTR
CACCCACAAATAAGTTCAGT+AGG 0.626468 1_2:+50148866 None:intergenic
AGCCGGTTATCATGATGGCG+GGG 0.629265 1_2:-50149465 Msa0075080:CDS
AAAGGATGGAACAAATGGCA+TGG 0.632758 1_2:-50149374 Msa0075080:CDS
GAAAACAAACTTCTTGACAG+AGG 0.633258 1_2:+50149067 None:intergenic
ACGCTATAAGTTTACAACGT+CGG 0.636142 1_2:+50148601 None:intergenic
CAATCAGCAAATGATAGACG+TGG 0.641310 1_2:+50151228 None:intergenic
TGTGAAGCTGACAAAATCAA+AGG 0.662632 1_2:-50149392 Msa0075080:CDS
TTCTGAATTGAGTTGTAGAG+TGG 0.666148 1_2:+50150973 None:intergenic
ATGAACCTATCCCAGTCCCG+TGG 0.667895 1_2:+50149181 None:intergenic
CAAGCCGGTTATCATGATGG+CGG 0.670938 1_2:-50149467 Msa0075080:CDS
ATAATGAAAGAAAGCCGTAG+AGG 0.674794 1_2:+50148983 None:intergenic
TTTGTACCTGAGTATGAGCG+TGG 0.677678 1_2:+50150949 None:intergenic
TTGAAGCCAAGTATATAATG+CGG 0.690031 1_2:-50149207 Msa0075080:CDS
ATAGGAAAGCAGTTACATGG+TGG 0.743263 1_2:+50149031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAGTTAATTTTAAAAAAATT+TGG + chr1_2:50149727-50149746 None:intergenic 10.0%
!! AAATAAACAAAACAAAAGAT+GGG - chr1_2:50149071-50149090 Msa0075080:three_prime_UTR 15.0%
!!! TATTGTATTAAACAGTTTTT+TGG - chr1_2:50149834-50149853 Msa0075080:intron 15.0%
!! ATTATATAGATATGTATATG+CGG - chr1_2:50149934-50149953 Msa0075080:intron 15.0%
!! TCTTTCATTATGATTAAAAA+AGG - chr1_2:50150803-50150822 Msa0075080:intron 15.0%
!! AATAAATCCTTAATGATAAA+TGG + chr1_2:50151146-50151165 None:intergenic 15.0%
!! TGTATATCATTAATAAATAC+AGG - chr1_2:50151215-50151234 Msa0075080:five_prime_UTR 15.0%
!! AAAAGATAGAAGTAAAATTG+TGG + chr1_2:50148686-50148705 None:intergenic 20.0%
!! GTAAATTCATAATATGAATC+AGG - chr1_2:50148970-50148989 Msa0075080:three_prime_UTR 20.0%
!! TTAATTTACAAGTCAACAAT+TGG + chr1_2:50149033-50149052 None:intergenic 20.0%
!!! CATCTTTTGTTTTGTTTATT+TGG + chr1_2:50149072-50149091 None:intergenic 20.0%
!! CAAATAAACAAAACAAAAGA+TGG - chr1_2:50149070-50149089 Msa0075080:three_prime_UTR 20.0%
!!! TTTGGTTTAAGTTTAAGTTT+AGG - chr1_2:50149852-50149871 Msa0075080:intron 20.0%
!! TTATATAGATATGTATATGC+GGG - chr1_2:50149935-50149954 Msa0075080:intron 20.0%
!!! CACTTTTTATTTTCTATGTA+GGG + chr1_2:50150122-50150141 None:intergenic 20.0%
!!! TCACTTTTTATTTTCTATGT+AGG + chr1_2:50150123-50150142 None:intergenic 20.0%
!!! CTTTGTTTGTTATTGTTTTG+TGG - chr1_2:50148869-50148888 Msa0075080:three_prime_UTR 25.0%
!!! ATGTTTTGAGAACTTATGTT+TGG - chr1_2:50148902-50148921 Msa0075080:three_prime_UTR 25.0%
!! ATGAATCAGGTTAACATTTT+TGG - chr1_2:50148983-50149002 Msa0075080:three_prime_UTR 25.0%
!! TGAATCAGGTTAACATTTTT+GGG - chr1_2:50148984-50149003 Msa0075080:three_prime_UTR 25.0%
! TGTTGTCAAGAAAAAAATGT+TGG + chr1_2:50149127-50149146 None:intergenic 25.0%
! TTATACTTGTACTAGAATTG+TGG - chr1_2:50149266-50149285 Msa0075080:CDS 25.0%
!!! AGATTTTTAGCCATAGAAAT+AGG - chr1_2:50149482-50149501 Msa0075080:CDS 25.0%
!!! GATTTTTAGCCATAGAAATA+GGG - chr1_2:50149483-50149502 Msa0075080:CDS 25.0%
! TATATAGATATGTATATGCG+GGG - chr1_2:50149936-50149955 Msa0075080:intron 25.0%
! TAATACCCACAAATTTAAAC+GGG + chr1_2:50150003-50150022 None:intergenic 25.0%
! GTAATACCCACAAATTTAAA+CGG + chr1_2:50150004-50150023 None:intergenic 25.0%
!!! TTTTATTTTCTATGTAGGGA+TGG + chr1_2:50150118-50150137 None:intergenic 25.0%
!! AATTTAAGTTCAAACTTCCA+TGG + chr1_2:50150214-50150233 None:intergenic 25.0%
! AACTTAAATTCCTCATTCAA+TGG - chr1_2:50150224-50150243 Msa0075080:intron 25.0%
!! CCTTGAATGAATTGAATTTT+GGG + chr1_2:50150338-50150357 None:intergenic 25.0%
!! TCCTTGAATGAATTGAATTT+TGG + chr1_2:50150339-50150358 None:intergenic 25.0%
!! TGGTTTTTATATGATTGATG+AGG - chr1_2:50150484-50150503 Msa0075080:intron 25.0%
!! TTTTATATGATTGATGAGGA+AGG - chr1_2:50150488-50150507 Msa0075080:intron 25.0%
! GTAAATGCTAAATTTGTCAA+CGG - chr1_2:50150530-50150549 Msa0075080:intron 25.0%
ACATTATCATCACAAGTGAA+TGG - chr1_2:50148628-50148647 Msa0075080:three_prime_UTR 30.0%
AAGTTCTCAAAACATTTCAC+AGG + chr1_2:50148897-50148916 None:intergenic 30.0%
! GAATCAGGTTAACATTTTTG+GGG - chr1_2:50148985-50149004 Msa0075080:three_prime_UTR 30.0%
CAATTGGAGCAAACTATATA+AGG + chr1_2:50149017-50149036 None:intergenic 30.0%
!!! GTTTTGTTTATTTGGCATTC+TGG + chr1_2:50149064-50149083 None:intergenic 30.0%
TTCTTGCATTGTTCAGTATT+TGG - chr1_2:50149151-50149170 Msa0075080:CDS 30.0%
!!! TTTTTTACAAATGCGGGTAT+GGG + chr1_2:50149552-50149571 None:intergenic 30.0%
!!! ATTTTTTACAAATGCGGGTA+TGG + chr1_2:50149553-50149572 None:intergenic 30.0%
!!! ACGGGTATTTTTTACAAATG+CGG + chr1_2:50149559-50149578 None:intergenic 30.0%
! TCTTTTCATAGTTAAAGTGC+GGG + chr1_2:50149669-50149688 None:intergenic 30.0%
! GTCTTTTCATAGTTAAAGTG+CGG + chr1_2:50149670-50149689 None:intergenic 30.0%
ATCCCTAAAAAATTGTACAC+CGG - chr1_2:50149797-50149816 Msa0075080:intron 30.0%
TTAAATTTGTGGGTATTACC+CGG - chr1_2:50150005-50150024 Msa0075080:intron 30.0%
TCCATGGATAATTAAAGAAG+TGG + chr1_2:50150198-50150217 None:intergenic 30.0%
!!! GGAGTTTTTTGAGTTATCAT+CGG + chr1_2:50150281-50150300 None:intergenic 30.0%
CCCAAAATTCAATTCATTCA+AGG - chr1_2:50150335-50150354 Msa0075080:intron 30.0%
AAATCAAAGGATGGAACAAA+TGG - chr1_2:50150395-50150414 Msa0075080:intron 30.0%
CATTTACATCAACAGATTGA+AGG + chr1_2:50150517-50150536 None:intergenic 30.0%
TTGAAGCCAAGTATATAATG+CGG - chr1_2:50150567-50150586 Msa0075080:intron 30.0%
! AAAAGGCAAGAGTTTTTGTT+AGG - chr1_2:50150820-50150839 Msa0075080:intron 30.0%
TTTCCTACTGAACTTATTTG+TGG - chr1_2:50150905-50150924 Msa0075080:intron 30.0%
TTCCTACTGAACTTATTTGT+GGG - chr1_2:50150906-50150925 Msa0075080:intron 30.0%
AGATATTCTACTACGATAAC+AGG + chr1_2:50150942-50150961 None:intergenic 30.0%
CATTCCAATTCGATAAAATC+TGG + chr1_2:50151011-50151030 None:intergenic 30.0%
!! ACTAGTGCCATTTATCATTA+AGG - chr1_2:50151136-50151155 Msa0075080:five_prime_UTR 30.0%
! ATGGATTGTCACAAATCTGA+TGG - chr1_2:50148592-50148611 Msa0075080:three_prime_UTR 35.0%
TTATGACAACTAGAGAAGCT+AGG - chr1_2:50148710-50148729 Msa0075080:three_prime_UTR 35.0%
! AACTGCTTCTCTCTTTTTCT+TGG - chr1_2:50148743-50148762 Msa0075080:three_prime_UTR 35.0%
! TTCTCTCTTTTTCTTGGCAA+TGG - chr1_2:50148749-50148768 Msa0075080:three_prime_UTR 35.0%
! TTCTGAATTGAGTTGTAGAG+TGG + chr1_2:50148804-50148823 None:intergenic 35.0%
!!! GGTTAACATTTTTGGGGTTA+AGG - chr1_2:50148991-50149010 Msa0075080:three_prime_UTR 35.0%
GAACATCATACATACCATCA+GGG + chr1_2:50149202-50149221 None:intergenic 35.0%
AGAACATCATACATACCATC+AGG + chr1_2:50149203-50149222 None:intergenic 35.0%
GATGGTATGTATGATGTTCT+TGG - chr1_2:50149203-50149222 Msa0075080:CDS 35.0%
TACTAGAATTGTGGAGTAAC+AGG - chr1_2:50149275-50149294 Msa0075080:CDS 35.0%
!! GTAGCTTGCTTGAAACTAAT+GGG + chr1_2:50149373-50149392 None:intergenic 35.0%
!! TGTAGCTTGCTTGAAACTAA+TGG + chr1_2:50149374-50149393 None:intergenic 35.0%
ATCACATGTTCGAGATTTCA+AGG + chr1_2:50149454-50149473 None:intergenic 35.0%
TTTAGCCATAGAAATAGGGA+TGG - chr1_2:50149487-50149506 Msa0075080:CDS 35.0%
ATAGAAATAGGGATGGCAAT+GGG - chr1_2:50149494-50149513 Msa0075080:CDS 35.0%
! TTTTTACAAATGCGGGTATG+GGG + chr1_2:50149551-50149570 None:intergenic 35.0%
!!! CGGGTATTTTTTACAAATGC+GGG + chr1_2:50149558-50149577 None:intergenic 35.0%
ATAGTTAAAGTGCGGGTAAT+GGG + chr1_2:50149662-50149681 None:intergenic 35.0%
!!! TGCCGGTGTACAATTTTTTA+GGG + chr1_2:50149802-50149821 None:intergenic 35.0%
!!! ATGCCGGTGTACAATTTTTT+AGG + chr1_2:50149803-50149822 None:intergenic 35.0%
CCACAAATTTAAACGGGTAT+GGG + chr1_2:50149997-50150016 None:intergenic 35.0%
CCATACCCGTTTAAATTTGT+GGG - chr1_2:50149995-50150014 Msa0075080:intron 35.0%
AAAAATACCCACAATGGGTA+GGG + chr1_2:50150064-50150083 None:intergenic 35.0%
AAAAAATACCCACAATGGGT+AGG + chr1_2:50150065-50150084 None:intergenic 35.0%
GCCACTTCTTTAATTATCCA+TGG - chr1_2:50150194-50150213 Msa0075080:intron 35.0%
CAAATGTTGACCATTGAATG+AGG + chr1_2:50150237-50150256 None:intergenic 35.0%
TGTGAAGCTGACAAAATCAA+AGG - chr1_2:50150382-50150401 Msa0075080:intron 35.0%
AAGCTGACAAAATCAAAGGA+TGG - chr1_2:50150386-50150405 Msa0075080:intron 35.0%
CCAGAAGAATCAAAAACTGA+GGG + chr1_2:50150446-50150465 None:intergenic 35.0%
TCCAGAAGAATCAAAAACTG+AGG + chr1_2:50150447-50150466 None:intergenic 35.0%
! TTTGATTCTTCTGGAGAAGT+AGG - chr1_2:50150452-50150471 Msa0075080:intron 35.0%
CAGAGGACAAAAGAATAGAA+GGG + chr1_2:50150693-50150712 None:intergenic 35.0%
ACAGAGGACAAAAGAATAGA+AGG + chr1_2:50150694-50150713 None:intergenic 35.0%
GAAAACAAACTTCTTGACAG+AGG + chr1_2:50150710-50150729 None:intergenic 35.0%
TCTATAGGAAAGCAGTTACA+TGG + chr1_2:50150749-50150768 None:intergenic 35.0%
!! CAATAAGCTTTGGGATCTAT+AGG + chr1_2:50150764-50150783 None:intergenic 35.0%
GGTGTAGAACAATAAGCTTT+GGG + chr1_2:50150773-50150792 None:intergenic 35.0%
AGGTGTAGAACAATAAGCTT+TGG + chr1_2:50150774-50150793 None:intergenic 35.0%
CTTATTGTTCTACACCTCTA+CGG - chr1_2:50150777-50150796 Msa0075080:intron 35.0%
ATAATGAAAGAAAGCCGTAG+AGG + chr1_2:50150794-50150813 None:intergenic 35.0%
AATATCTCCCTAGCTAATAG+AGG - chr1_2:50150955-50150974 Msa0075080:intron 35.0%
ATTTCCTCCTCTATTAGCTA+GGG + chr1_2:50150965-50150984 None:intergenic 35.0%
TATTTCCTCCTCTATTAGCT+AGG + chr1_2:50150966-50150985 None:intergenic 35.0%
! CTAGCCAGATTTTATCGAAT+TGG - chr1_2:50151004-50151023 Msa0075080:CDS 35.0%
ACGCTATAAGTTTACAACGT+CGG + chr1_2:50151176-50151195 None:intergenic 35.0%
CAATCAGCAAATGATAGACG+TGG + chr1_2:50148549-50148568 None:intergenic 40.0%
! AATTGAGTTGTAGAGTGGAG+AGG + chr1_2:50148799-50148818 None:intergenic 40.0%
TAATATAGCTTCCACCCTGA+TGG - chr1_2:50149185-50149204 Msa0075080:CDS 40.0%
ATGTTCTTGGCAACACTCTA+TGG - chr1_2:50149216-50149235 Msa0075080:CDS 40.0%
CAACACTCTATGGAACAGAA+TGG - chr1_2:50149226-50149245 Msa0075080:CDS 40.0%
TCTATGGAACAGAATGGCAT+TGG - chr1_2:50149232-50149251 Msa0075080:CDS 40.0%
CTATGGAACAGAATGGCATT+GGG - chr1_2:50149233-50149252 Msa0075080:CDS 40.0%
TGTTCGAGATTTCAAGGTCA+GGG + chr1_2:50149448-50149467 None:intergenic 40.0%
ATGTTCGAGATTTCAAGGTC+AGG + chr1_2:50149449-50149468 None:intergenic 40.0%
!! CATTGCCATCCCTATTTCTA+TGG + chr1_2:50149495-50149514 None:intergenic 40.0%
CATAGAAATAGGGATGGCAA+TGG - chr1_2:50149493-50149512 Msa0075080:CDS 40.0%
CATAGTTAAAGTGCGGGTAA+TGG + chr1_2:50149663-50149682 None:intergenic 40.0%
AAAATTGTACACCGGCATGA+TGG - chr1_2:50149805-50149824 Msa0075080:intron 40.0%
CAATAACAACTCCATCATGC+CGG + chr1_2:50149819-50149838 None:intergenic 40.0%
AATTTAAACGGGTATGGGCA+CGG + chr1_2:50149992-50150011 None:intergenic 40.0%
CCCATACCCGTTTAAATTTG+TGG - chr1_2:50149994-50150013 Msa0075080:intron 40.0%
CCCACAAATTTAAACGGGTA+TGG + chr1_2:50149998-50150017 None:intergenic 40.0%
CCGCAAAAAATACCCACAAT+GGG + chr1_2:50150069-50150088 None:intergenic 40.0%
!!! CCCATTGTGGGTATTTTTTG+CGG - chr1_2:50150066-50150085 Msa0075080:intron 40.0%
!!! CCATTGTGGGTATTTTTTGC+GGG - chr1_2:50150067-50150086 Msa0075080:intron 40.0%
!!! TATTTTTTGCGGGTACCCAT+AGG - chr1_2:50150077-50150096 Msa0075080:intron 40.0%
!!! ATTTTTTGCGGGTACCCATA+GGG - chr1_2:50150078-50150097 Msa0075080:intron 40.0%
TTCTATGTAGGGATGGCAAT+TGG + chr1_2:50150111-50150130 None:intergenic 40.0%
ATTTGCATGTGCCAAGTTTG+AGG - chr1_2:50150252-50150271 Msa0075080:intron 40.0%
ATCATCGGTAACCTCAAACT+TGG + chr1_2:50150266-50150285 None:intergenic 40.0%
! GATTTTGTCAGCTTCACATC+AGG + chr1_2:50150380-50150399 None:intergenic 40.0%
AAAGGATGGAACAAATGGCA+TGG - chr1_2:50150400-50150419 Msa0075080:intron 40.0%
!! CCCTCAGTTTTTGATTCTTC+TGG - chr1_2:50150443-50150462 Msa0075080:intron 40.0%
TACTTGGCTTCAATTCCTGA+GGG + chr1_2:50150560-50150579 None:intergenic 40.0%
ATACTTGGCTTCAATTCCTG+AGG + chr1_2:50150561-50150580 None:intergenic 40.0%
TGGAGTCCGCATTATATACT+TGG + chr1_2:50150576-50150595 None:intergenic 40.0%
AGTATATAATGCGGACTCCA+CGG - chr1_2:50150576-50150595 Msa0075080:intron 40.0%
GGATAGGTTCATGAGATTCA+TGG - chr1_2:50150604-50150623 Msa0075080:intron 40.0%
ATAGGAAAGCAGTTACATGG+TGG + chr1_2:50150746-50150765 None:intergenic 40.0%
CACCCACAAATAAGTTCAGT+AGG + chr1_2:50150911-50150930 None:intergenic 40.0%
! TTTTGTGGTGAAGTCCCTTT+TGG + chr1_2:50151067-50151086 None:intergenic 40.0%
AAAGGGACTTCACCACAAAA+AGG - chr1_2:50151067-50151086 Msa0075080:five_prime_UTR 40.0%
AAGGGACTTCACCACAAAAA+GGG - chr1_2:50151068-50151087 Msa0075080:five_prime_UTR 40.0%
! GAACTCAACATCCCTTTTTG+TGG + chr1_2:50151082-50151101 None:intergenic 40.0%
ATGGCACTAGTAGAGATCAT+TGG + chr1_2:50151127-50151146 None:intergenic 40.0%
! ATCCATTGCTGTTGCTGACA+TGG + chr1_2:50148578-50148597 None:intergenic 45.0%
GGCTGTGTTTGTGACACAAT+AGG - chr1_2:50148649-50148668 Msa0075080:three_prime_UTR 45.0%
GTGACACAATAGGCATTCTG+TGG - chr1_2:50148659-50148678 Msa0075080:three_prime_UTR 45.0%
TTTGTACCTGAGTATGAGCG+TGG + chr1_2:50148828-50148847 None:intergenic 45.0%
CATCATACATACCATCAGGG+TGG + chr1_2:50149199-50149218 None:intergenic 45.0%
ATTTCAAGGTCAGGGGTCAA+GGG + chr1_2:50149440-50149459 None:intergenic 45.0%
GTTCGAGATTTCAAGGTCAG+GGG + chr1_2:50149447-50149466 None:intergenic 45.0%
ACTGTAGTACCCTACCCATA+GGG + chr1_2:50149522-50149541 None:intergenic 45.0%
ACTAAAGTTGTTGCCCACGA+GGG + chr1_2:50149595-50149614 None:intergenic 45.0%
TTAGGTACCCATAGGGTATG+GGG + chr1_2:50149624-50149643 None:intergenic 45.0%
CTTAGGTACCCATAGGGTAT+GGG + chr1_2:50149625-50149644 None:intergenic 45.0%
ACTTAGGTACCCATAGGGTA+TGG + chr1_2:50149626-50149645 None:intergenic 45.0%
GATATGTATATGCGGGGTTG+CGG - chr1_2:50149942-50149961 Msa0075080:intron 45.0%
ATATGTATATGCGGGGTTGC+GGG - chr1_2:50149943-50149962 Msa0075080:intron 45.0%
ATTTAAACGGGTATGGGCAC+GGG + chr1_2:50149991-50150010 None:intergenic 45.0%
AACCCCGCATTTATGGGTTT+GGG + chr1_2:50150038-50150057 None:intergenic 45.0%
AAACCCCGCATTTATGGGTT+TGG + chr1_2:50150039-50150058 None:intergenic 45.0%
GGGTAAAACCCCGCATTTAT+GGG + chr1_2:50150044-50150063 None:intergenic 45.0%
AGGGTAAAACCCCGCATTTA+TGG + chr1_2:50150045-50150064 None:intergenic 45.0%
! GGTTTTACCCTACCCATTGT+GGG - chr1_2:50150054-50150073 Msa0075080:intron 45.0%
CCCGCAAAAAATACCCACAA+TGG + chr1_2:50150070-50150089 None:intergenic 45.0%
AAAAACTCCCATGCACAAGC+CGG - chr1_2:50150292-50150311 Msa0075080:intron 45.0%
!! ATGATAACCGGCTTGTGCAT+GGG + chr1_2:50150302-50150321 None:intergenic 45.0%
CAAATGGCATGGCTATCTTC+AGG - chr1_2:50150411-50150430 Msa0075080:intron 45.0%
GTATATAATGCGGACTCCAC+GGG - chr1_2:50150577-50150596 Msa0075080:intron 45.0%
GAGCGATACTCTGATGCTAA+TGG - chr1_2:50150626-50150645 Msa0075080:intron 45.0%
ATCTCCCTAGCTAATAGAGG+AGG - chr1_2:50150958-50150977 Msa0075080:CDS 45.0%
TTTGAGTACTAGACCCTGCT+AGG - chr1_2:50151039-50151058 Msa0075080:five_prime_UTR 45.0%
!!! ATAAACAATTTATTTATTTT+TGG + chr1_2:50149911-50149930 None:intergenic 5.0%
TGCCATGTCAGCAACAGCAA+TGG - chr1_2:50148573-50148592 Msa0075080:three_prime_UTR 50.0%
GATTTCAAGGTCAGGGGTCA+AGG + chr1_2:50149441-50149460 None:intergenic 50.0%
GATGGCAATGGGTACCCTAT+GGG - chr1_2:50149505-50149524 Msa0075080:CDS 50.0%
CAATGGGTACCCTATGGGTA+GGG - chr1_2:50149510-50149529 Msa0075080:CDS 50.0%
CACTGTAGTACCCTACCCAT+AGG + chr1_2:50149523-50149542 None:intergenic 50.0%
ACAAATGCGGGTATGGGGAA+GGG + chr1_2:50149546-50149565 None:intergenic 50.0%
TACAAATGCGGGTATGGGGA+AGG + chr1_2:50149547-50149566 None:intergenic 50.0%
GACTAAAGTTGTTGCCCACG+AGG + chr1_2:50149596-50149615 None:intergenic 50.0%
TACCCATAGGGTATGGGGAA+GGG + chr1_2:50149619-50149638 None:intergenic 50.0%
TGGGCACTTAGGTACCCATA+GGG + chr1_2:50149631-50149650 None:intergenic 50.0%
ATGGGCACTTAGGTACCCAT+AGG + chr1_2:50149632-50149651 None:intergenic 50.0%
!! TAAAGTGCGGGTAATGGGTG+CGG + chr1_2:50149657-50149676 None:intergenic 50.0%
GCATTTATGGGTTTGGGCAC+GGG + chr1_2:50150032-50150051 None:intergenic 50.0%
CGCATTTATGGGTTTGGGCA+CGG + chr1_2:50150033-50150052 None:intergenic 50.0%
CGTGCCCAAACCCATAAATG+CGG - chr1_2:50150031-50150050 Msa0075080:intron 50.0%
GTGCCCAAACCCATAAATGC+GGG - chr1_2:50150032-50150051 Msa0075080:intron 50.0%
TGCCCAAACCCATAAATGCG+GGG - chr1_2:50150033-50150052 Msa0075080:intron 50.0%
! GGGTTTTACCCTACCCATTG+TGG - chr1_2:50150053-50150072 Msa0075080:intron 50.0%
CAATTGGACCCAGACCCTAT+GGG + chr1_2:50150095-50150114 None:intergenic 50.0%
!! CATGATAACCGGCTTGTGCA+TGG + chr1_2:50150303-50150322 None:intergenic 50.0%
GCACAAGCCGGTTATCATGA+TGG - chr1_2:50150304-50150323 Msa0075080:intron 50.0%
CAAGCCGGTTATCATGATGG+CGG - chr1_2:50150307-50150326 Msa0075080:intron 50.0%
AAGCCGGTTATCATGATGGC+GGG - chr1_2:50150308-50150327 Msa0075080:intron 50.0%
TTCCCCGCCATCATGATAAC+CGG + chr1_2:50150314-50150333 None:intergenic 50.0%
GGAGAAGTAGGCGACATTAC+TGG - chr1_2:50150464-50150483 Msa0075080:intron 50.0%
TTTGTCAACGGAAAGCCCTC+AGG - chr1_2:50150542-50150561 Msa0075080:intron 50.0%
AGACCCTGCTAGGATCCAAA+AGG - chr1_2:50151049-50151068 Msa0075080:five_prime_UTR 50.0%
GACCCTGCTAGGATCCAAAA+GGG - chr1_2:50151050-50151069 Msa0075080:five_prime_UTR 50.0%
! GTCCCTTTTGGATCCTAGCA+GGG + chr1_2:50151055-50151074 None:intergenic 50.0%
! AGTCCCTTTTGGATCCTAGC+AGG + chr1_2:50151056-50151075 None:intergenic 50.0%
CAGAAGCCACGCTCATACTC+AGG - chr1_2:50148819-50148838 Msa0075080:three_prime_UTR 55.0%
GGATGGCAATGGGTACCCTA+TGG - chr1_2:50149504-50149523 Msa0075080:CDS 55.0%
GCAATGGGTACCCTATGGGT+AGG - chr1_2:50149509-50149528 Msa0075080:CDS 55.0%
AGTTGTTGCCCACGAGGGTA+CGG + chr1_2:50149590-50149609 None:intergenic 55.0%
TCCCCTTCCCCATACCCTAT+GGG - chr1_2:50149614-50149633 Msa0075080:intron 55.0%
ACCCATAGGGTATGGGGAAG+GGG + chr1_2:50149618-50149637 None:intergenic 55.0%
GTACCCATAGGGTATGGGGA+AGG + chr1_2:50149620-50149639 None:intergenic 55.0%
!! AAAGTGCGGGTAATGGGTGC+GGG + chr1_2:50149656-50149675 None:intergenic 55.0%
GCAATTGGACCCAGACCCTA+TGG + chr1_2:50150096-50150115 None:intergenic 55.0%
! AGCCGGTTATCATGATGGCG+GGG - chr1_2:50150309-50150328 Msa0075080:intron 55.0%
ATGAACCTATCCCAGTCCCG+TGG + chr1_2:50150596-50150615 None:intergenic 55.0%
! GTTGTTGCCCACGAGGGTAC+GGG + chr1_2:50149589-50149608 None:intergenic 60.0%
GTCCCCTTCCCCATACCCTA+TGG - chr1_2:50149613-50149632 Msa0075080:intron 60.0%
!! CGGGTAATGGGTGCGGGTAT+GGG + chr1_2:50149650-50149669 None:intergenic 60.0%
TATATGCGGGGTTGCGGGTC+TGG - chr1_2:50149948-50149967 Msa0075080:intron 60.0%
ATATGCGGGGTTGCGGGTCT+GGG - chr1_2:50149949-50149968 Msa0075080:intron 60.0%
ACGGGTATGGGCACGGGTAA+GGG + chr1_2:50149985-50150004 None:intergenic 60.0%
AACGGGTATGGGCACGGGTA+AGG + chr1_2:50149986-50150005 None:intergenic 60.0%
TATGGGTTTGGGCACGGGTC+CGG + chr1_2:50150027-50150046 None:intergenic 60.0%
TTGCGGGTACCCATAGGGTC+TGG - chr1_2:50150083-50150102 Msa0075080:intron 60.0%
TGCGGGTACCCATAGGGTCT+GGG - chr1_2:50150084-50150103 Msa0075080:intron 60.0%
TAATGCGGACTCCACGGGAC+TGG - chr1_2:50150582-50150601 Msa0075080:intron 60.0%
AATGCGGACTCCACGGGACT+GGG - chr1_2:50150583-50150602 Msa0075080:intron 60.0%
GGGTGCGGGTATGGGCACTT+AGG + chr1_2:50149642-50149661 None:intergenic 65.0%
!! GCGGGTAATGGGTGCGGGTA+TGG + chr1_2:50149651-50149670 None:intergenic 65.0%
ATGGGTTTGGGCACGGGTCC+GGG + chr1_2:50150026-50150045 None:intergenic 65.0%
GGACTCCACGGGACTGGGAT+AGG - chr1_2:50150588-50150607 Msa0075080:intron 65.0%
! GAGGGTACGGGCACGGGTAC+GGG + chr1_2:50149577-50149596 None:intergenic 70.0%
! CGAGGGTACGGGCACGGGTA+CGG + chr1_2:50149578-50149597 None:intergenic 70.0%
TACCCGTGCCCGTACCCTCG+TGG - chr1_2:50149578-50149597 Msa0075080:CDS 70.0%
ACCCGTGCCCGTACCCTCGT+GGG - chr1_2:50149579-50149598 Msa0075080:CDS 70.0%
! TGCCCACGAGGGTACGGGCA+CGG + chr1_2:50149584-50149603 None:intergenic 70.0%
! GCCCACGAGGGTACGGGCAC+GGG + chr1_2:50149583-50149602 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 50148545 50151251 50148545 ID=Msa0075080;Name=Msa0075080
chr1_2 mRNA 50148545 50151251 50148545 ID=Msa0075080-mRNA-1;Parent=Msa0075080;Name=Msa0075080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=223|1|1|1|1|1|2|581|182
chr1_2 exon 50148545 50149601 50148545 ID=Msa0075080-mRNA-1:exon:15429;Parent=Msa0075080-mRNA-1
chr1_2 exon 50150956 50151251 50150956 ID=Msa0075080-mRNA-1:exon:15428;Parent=Msa0075080-mRNA-1
chr1_2 five_prime_UTR 50151029 50151251 50151029 ID=Msa0075080-mRNA-1:five_prime_utr;Parent=Msa0075080-mRNA-1
chr1_2 CDS 50150956 50151028 50150956 ID=Msa0075080-mRNA-1:cds;Parent=Msa0075080-mRNA-1
chr1_2 CDS 50149126 50149601 50149126 ID=Msa0075080-mRNA-1:cds;Parent=Msa0075080-mRNA-1
chr1_2 three_prime_UTR 50148545 50149125 50148545 ID=Msa0075080-mRNA-1:three_prime_utr;Parent=Msa0075080-mRNA-1
Gene Sequence

>Msa0075080

ATGGCAACTATGCACTCTCTTGCATTCTCCTCTCCACTCTACAACTCAATTCAGAAGCCACGCTCATACTCAGCCACTTCTTTAATTATCCATGGAAGTTTGAACTTAAATTCCTCATTCAATGGTCAACATTTGCATGTGCCAAGTTTGAGGTTACCGATGATAACTCAAAAAACTCCCATGCACAAGCCGGTTATCATGATGGCGGGGAAGCCCAAAATTCAATTCATTCAAGGAACTGATGAACTGACAATACCTGATGTGAAGCTGACAAAATCAAAGGATGGAACAAATGGCATGGCTATCTTCAGGTTTGATCAACCCTCAGTTTTTGATTCTTCTGGAGAAGTAGGCGACATTACTGGTTTTTATATGATTGATGAGGAAGGAGTCCTTCAATCTGTTGATGTAAATGCTAAATTTGTCAACGGAAAGCCCTCAGGAATTGAAGCCAAGTATATAATGCGGACTCCACGGGACTGGGATAGGTTCATGAGATTCATGGAGCGATACTCTGATGCTAATGGTTTGCAATTCATAAAATATTGA

Protein sequence

>Msa0075080

MATMHSLAFSSPLYNSIQKPRSYSATSLIIHGSLNLNSSFNGQHLHVPSLRLPMITQKTPMHKPVIMMAGKPKIQFIQGTDELTIPDVKLTKSKDGTNGMAIFRFDQPSVFDSSGEVGDITGFYMIDEEGVLQSVDVNAKFVNGKPSGIEAKYIMRTPRDWDRFMRFMERYSDANGLQFIKY*