Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565640 | PNX76972.1 | 87.964 | 673 | 78 | 3 | 8 | 678 | 2 | 673 | 0.0 | 1204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565640 | sp|Q9ZP55|DRP4C_ARATH | 56.994 | 672 | 280 | 5 | 3 | 671 | 2 | 667 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565640 | A0A2K3LEM1 | 87.964 | 673 | 78 | 3 | 8 | 678 | 2 | 673 | 0.0 | 1204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0565640 | 0.804121 | 2.515141e-49 | -8.615850e-47 |
| Msa0108880 | Msa0565640 | 0.804896 | 1.733649e-49 | -8.615850e-47 |
| Msa0188610 | Msa0565640 | 0.842207 | 2.976859e-58 | -8.615850e-47 |
| Msa0205440 | Msa0565640 | 0.812088 | 5.055347e-51 | -8.615850e-47 |
| Msa0230800 | Msa0565640 | 0.829383 | 5.308442e-55 | -8.615850e-47 |
| Msa0230870 | Msa0565640 | 0.844953 | 5.493816e-59 | -8.615850e-47 |
| Msa0435210 | Msa0565640 | 0.809433 | 1.896389e-50 | -8.615850e-47 |
| Msa0436910 | Msa0565640 | 0.806686 | 7.293609e-50 | -8.615850e-47 |
| Msa0472950 | Msa0565640 | 0.810875 | 9.273423e-51 | -8.615850e-47 |
| Msa0248680 | Msa0565640 | 0.803671 | 3.119131e-49 | -8.615850e-47 |
| Msa0270340 | Msa0565640 | 0.838720 | 2.432193e-57 | -8.615850e-47 |
| Msa0286940 | Msa0565640 | 0.816907 | 4.340727e-52 | -8.615850e-47 |
| Msa0325540 | Msa0565640 | 0.819272 | 1.267234e-52 | -8.615850e-47 |
| Msa0528570 | Msa0565640 | 0.802574 | 5.258237e-49 | -8.615850e-47 |
| Msa0541300 | Msa0565640 | 0.847760 | 9.429924e-60 | -8.615850e-47 |
| Msa0541310 | Msa0565640 | 0.849421 | 3.269605e-60 | -8.615850e-47 |
| Msa0562560 | Msa0565640 | 0.800463 | 1.424127e-48 | -8.615850e-47 |
| Msa0565640 | Msa0565660 | 0.819037 | 1.433232e-52 | -8.615850e-47 |
| Msa0565640 | Msa0585020 | 0.830160 | 3.434226e-55 | -8.615850e-47 |
| Msa0565640 | Msa0597270 | 0.820758 | 5.791460e-53 | -8.615850e-47 |
| Msa0565640 | Msa0614850 | 0.804882 | 1.745271e-49 | -8.615850e-47 |
| Msa0565640 | Msa0657440 | 0.922170 | 1.391796e-88 | -8.615850e-47 |
| Msa0565640 | Msa0675330 | 0.830824 | 2.363000e-55 | -8.615850e-47 |
| Msa0565640 | Msa0701720 | 0.947150 | 1.175238e-105 | -8.615850e-47 |
| Msa0565640 | Msa0703710 | 0.815192 | 1.048317e-51 | -8.615850e-47 |
| Msa0565640 | Msa0859290 | 0.805512 | 1.288298e-49 | -8.615850e-47 |
| Msa0565640 | Msa1029530 | 0.801522 | 8.652264e-49 | -8.615850e-47 |
| Msa0565640 | Msa1078820 | 0.830753 | 2.458954e-55 | -8.615850e-47 |
| Msa0565640 | Msa1123970 | 0.837160 | 6.123654e-57 | -8.615850e-47 |
| Msa0565640 | Msa1169650 | 0.831428 | 1.678413e-55 | -8.615850e-47 |
| Msa0565640 | Msa1268630 | 0.805880 | 1.078306e-49 | -8.615850e-47 |
| Msa0565640 | Msa1303650 | 0.803484 | 3.410968e-49 | -8.615850e-47 |
| Msa0565640 | Msa1372040 | 0.806310 | 8.753507e-50 | -8.615850e-47 |
| Msa0565640 | Msa1384460 | 0.810065 | 1.387128e-50 | -8.615850e-47 |
| Msa0565640 | Msa1433790 | 0.928710 | 1.965206e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565640 | MtrunA17_Chr8g0379961 | 86.745 | 679 | 84 | 3 | 1 | 678 | 1 | 674 | 0.0 | 1197 |
| Msa0565640 | MtrunA17_Chr8g0379941 | 82.712 | 671 | 111 | 3 | 6 | 675 | 11 | 677 | 0.0 | 1132 |
| Msa0565640 | MtrunA17_Chr8g0379951 | 92.800 | 125 | 9 | 0 | 439 | 563 | 1 | 125 | 4.37e-78 | 244 |
| Msa0565640 | MtrunA17_Chr4g0049731 | 34.328 | 402 | 237 | 13 | 67 | 452 | 35 | 425 | 1.99e-42 | 164 |
| Msa0565640 | MtrunA17_Chr2g0279671 | 37.261 | 314 | 185 | 6 | 63 | 366 | 40 | 351 | 4.19e-41 | 160 |
| Msa0565640 | MtrunA17_Chr5g0396561 | 30.128 | 468 | 291 | 15 | 69 | 518 | 35 | 484 | 1.85e-34 | 139 |
| Msa0565640 | MtrunA17_Chr8g0391891 | 35.461 | 282 | 163 | 6 | 69 | 337 | 35 | 310 | 8.06e-33 | 134 |
| Msa0565640 | MtrunA17_Chr7g0233071 | 34.700 | 317 | 181 | 9 | 69 | 369 | 40 | 346 | 5.16e-32 | 131 |
| Msa0565640 | MtrunA17_Chr8g0388271 | 33.956 | 321 | 178 | 10 | 69 | 369 | 34 | 340 | 6.29e-32 | 131 |
| Msa0565640 | MtrunA17_Chr8g0337041 | 35.220 | 318 | 178 | 10 | 69 | 369 | 40 | 346 | 7.93e-32 | 131 |
| Msa0565640 | MtrunA17_Chr4g0055051 | 34.375 | 320 | 178 | 11 | 69 | 369 | 34 | 340 | 3.20e-31 | 129 |
| Msa0565640 | MtrunA17_Chr8g0346971 | 39.904 | 208 | 105 | 6 | 69 | 264 | 34 | 233 | 1.73e-28 | 120 |
| Msa0565640 | MtrunA17_Chr8g0360401 | 29.258 | 229 | 147 | 5 | 54 | 269 | 27 | 253 | 5.88e-16 | 82.0 |
| Msa0565640 | MtrunA17_Chr1g0161401 | 28.879 | 232 | 139 | 8 | 167 | 386 | 5 | 222 | 1.75e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565640 | AT1G60500.1 | 56.994 | 672 | 280 | 5 | 3 | 671 | 2 | 667 | 0.0 | 775 |
| Msa0565640 | AT1G60530.1 | 71.724 | 290 | 74 | 1 | 18 | 307 | 19 | 300 | 2.86e-143 | 420 |
| Msa0565640 | AT2G14120.4 | 29.955 | 444 | 288 | 10 | 25 | 452 | 1 | 437 | 2.74e-39 | 155 |
| Msa0565640 | AT2G14120.1 | 29.955 | 444 | 288 | 10 | 25 | 452 | 1 | 437 | 3.14e-39 | 155 |
| Msa0565640 | AT2G14120.2 | 29.955 | 444 | 288 | 10 | 25 | 452 | 1 | 437 | 3.20e-39 | 155 |
| Msa0565640 | AT2G14120.3 | 33.828 | 337 | 205 | 6 | 25 | 346 | 1 | 334 | 5.88e-39 | 154 |
| Msa0565640 | AT4G33650.1 | 29.705 | 441 | 266 | 11 | 37 | 452 | 31 | 452 | 8.05e-39 | 154 |
| Msa0565640 | AT4G33650.2 | 29.705 | 441 | 266 | 11 | 37 | 452 | 31 | 452 | 8.23e-39 | 154 |
| Msa0565640 | AT1G14830.1 | 32.903 | 310 | 196 | 6 | 69 | 369 | 35 | 341 | 5.96e-34 | 138 |
| Msa0565640 | AT5G42080.4 | 30.258 | 466 | 293 | 13 | 69 | 518 | 34 | 483 | 6.45e-33 | 135 |
| Msa0565640 | AT5G42080.1 | 30.258 | 466 | 293 | 13 | 69 | 518 | 34 | 483 | 6.45e-33 | 135 |
| Msa0565640 | AT2G44590.3 | 24.307 | 613 | 406 | 19 | 69 | 665 | 35 | 605 | 6.72e-33 | 134 |
| Msa0565640 | AT3G60190.1 | 33.232 | 328 | 199 | 9 | 69 | 386 | 40 | 357 | 9.01e-33 | 134 |
| Msa0565640 | AT5G42080.2 | 34.505 | 313 | 187 | 8 | 69 | 369 | 34 | 340 | 3.69e-32 | 130 |
| Msa0565640 | AT5G42080.3 | 34.505 | 313 | 187 | 8 | 69 | 369 | 34 | 340 | 9.30e-32 | 131 |
| Msa0565640 | AT3G61760.3 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 3.25e-30 | 125 |
| Msa0565640 | AT3G61760.1 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 3.48e-30 | 126 |
| Msa0565640 | AT3G61760.2 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 3.83e-30 | 126 |
| Msa0565640 | AT2G44590.2 | 22.838 | 613 | 398 | 20 | 69 | 665 | 35 | 588 | 2.94e-23 | 105 |
| Msa0565640 | AT2G44590.1 | 28.875 | 329 | 195 | 10 | 69 | 386 | 35 | 335 | 2.47e-22 | 102 |
| Msa0565640 | AT1G53140.1 | 27.119 | 236 | 160 | 5 | 44 | 269 | 36 | 269 | 9.64e-15 | 78.6 |
Find 124 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTTTCAACAAAATTAAT+TGG | 0.173861 | 4_1:-66521613 | None:intergenic |
| CTTGAGGAAGCCAAATTTAT+TGG | 0.191059 | 4_1:+66521517 | Msa0565640:CDS |
| ATTCGGAAGACCAATAAATT+TGG | 0.194065 | 4_1:-66521527 | None:intergenic |
| ATGGACAGGATTGGAAATTA+TGG | 0.215755 | 4_1:+66522243 | Msa0565640:CDS |
| ATCAAGTTTGTTTGCCTTTG+TGG | 0.244719 | 4_1:-66520261 | None:intergenic |
| TATTGTTGGAATTCCTGTTT+TGG | 0.276334 | 4_1:+66521147 | Msa0565640:CDS |
| GAGGAGTCTCCTTCAATATC+AGG | 0.303692 | 4_1:+66522153 | Msa0565640:CDS |
| ATCTGATCATAAATGTTATC+AGG | 0.304162 | 4_1:-66520800 | None:intergenic |
| AGGCCAGATTGACAGCTTAT+TGG | 0.313028 | 4_1:+66521989 | Msa0565640:CDS |
| TTCTAACTATTATCAGCTTC+AGG | 0.313313 | 4_1:+66521684 | Msa0565640:CDS |
| GAACTTTGATTTCCTCCATT+AGG | 0.316135 | 4_1:-66521495 | None:intergenic |
| TAACATTTATGATCAGATTA+AGG | 0.317964 | 4_1:+66520805 | Msa0565640:CDS |
| CTTCCAACCATTGTTGTTGT+TGG | 0.322456 | 4_1:+66520443 | Msa0565640:CDS |
| AGAGACCGTGGCCAACATTA+TGG | 0.325375 | 4_1:+66522224 | Msa0565640:CDS |
| TCACAAACTGTTGATAAAAC+TGG | 0.334047 | 4_1:+66520923 | Msa0565640:CDS |
| TCCACAGCCAGAGCTTGTTT+TGG | 0.338480 | 4_1:+66520583 | Msa0565640:CDS |
| CCTTACTTCAGAGAAAAGTT+AGG | 0.351453 | 4_1:+66521575 | Msa0565640:CDS |
| TGAAAGTGTATGGAATTATC+TGG | 0.352378 | 4_1:+66521627 | Msa0565640:CDS |
| CTTACTATGGTTGATCTTCC+AGG | 0.352429 | 4_1:+66520749 | Msa0565640:CDS |
| TAAGAAGATTAATGAGAAAC+TGG | 0.360082 | 4_1:+66521228 | Msa0565640:CDS |
| CAAGGGTACCTTTGGTTATG+AGG | 0.366182 | 4_1:+66520543 | Msa0565640:CDS |
| TGGACAGGATTGGAAATTAT+GGG | 0.366857 | 4_1:+66522244 | Msa0565640:CDS |
| CACATGTAACCCTGAGTACT+TGG | 0.369075 | 4_1:+66521807 | Msa0565640:CDS |
| GCAGTTCTTGGCATGAAATT+CGG | 0.376721 | 4_1:-66521544 | None:intergenic |
| GCCTGCTAATTTATCCTCAC+TGG | 0.379029 | 4_1:+66521279 | Msa0565640:CDS |
| TGGAGTTCCTGATCTTACTA+TGG | 0.379945 | 4_1:+66520736 | Msa0565640:CDS |
| CTCCATTAGGAAATCCTTAG+TGG | 0.385218 | 4_1:-66521482 | None:intergenic |
| TAAATCTCCTGAAGGTTTGC+TGG | 0.387244 | 4_1:+66520979 | Msa0565640:CDS |
| TTCAAAATAATACTCTCTTC+AGG | 0.392099 | 4_1:-66520851 | None:intergenic |
| GCTCTGGCTGTGGAAGTAAA+TGG | 0.394731 | 4_1:-66520574 | None:intergenic |
| AACAATAGATTTGTCTATCC+TGG | 0.395168 | 4_1:-66521131 | None:intergenic |
| ATAACTCGTGTTCCTGTTCA+TGG | 0.396246 | 4_1:+66520773 | Msa0565640:CDS |
| ACCTTCTCCAGCAAACCTTC+AGG | 0.399453 | 4_1:-66520986 | None:intergenic |
| TTTCCAATAAGCTGTCAATC+TGG | 0.399717 | 4_1:-66521992 | None:intergenic |
| TTACTACTTGTGAGTCGATA+AGG | 0.405010 | 4_1:+66520897 | Msa0565640:CDS |
| TGTCTCTTCCCTGATATTGA+AGG | 0.410432 | 4_1:-66522162 | None:intergenic |
| TTAATCTTCTTAATGATCTC+TGG | 0.413053 | 4_1:-66521217 | None:intergenic |
| GACGATGTTAACATTGGTCT+TGG | 0.414913 | 4_1:+66521016 | Msa0565640:CDS |
| TTGATGCTCTTGAAAATCTA+AGG | 0.416842 | 4_1:+66520390 | Msa0565640:CDS |
| AATTTGTACAAGGGTACCTT+TGG | 0.424069 | 4_1:+66520535 | Msa0565640:CDS |
| AAGGTCAGAAAAGCAGTTCT+TGG | 0.424321 | 4_1:-66521556 | None:intergenic |
| GTCTTGGTTATGTTTGTGTA+AGG | 0.435750 | 4_1:+66521032 | Msa0565640:CDS |
| ATATCCACACATGTTGAATC+AGG | 0.440980 | 4_1:+66521954 | Msa0565640:CDS |
| ACAGCCACTGAGGAGCTTGC+TGG | 0.443000 | 4_1:+66520662 | Msa0565640:CDS |
| TGGGGTGTTGGAAATCCCTT+TGG | 0.443439 | 4_1:-66520690 | None:intergenic |
| CTTACTTCAGAGAAAAGTTA+GGG | 0.447328 | 4_1:+66521576 | Msa0565640:CDS |
| GGCTACTAGTTTGCATGAGC+TGG | 0.448592 | 4_1:+66521249 | Msa0565640:CDS |
| AGGATAGACAAATCTATTGT+TGG | 0.453655 | 4_1:+66521133 | Msa0565640:CDS |
| TCATTATAAGAAGATACAAT+TGG | 0.458646 | 4_1:-66520350 | None:intergenic |
| GGAAGAGACAGAAGTTGAGC+AGG | 0.460748 | 4_1:+66522175 | Msa0565640:CDS |
| GAATCAGGCTTATGATTTGA+AGG | 0.463037 | 4_1:+66521969 | Msa0565640:CDS |
| TCTTTACTATCAAAGTCAGT+GGG | 0.470875 | 4_1:-66520709 | None:intergenic |
| TTATACTCCTCCAAGTACTC+AGG | 0.473801 | 4_1:-66521817 | None:intergenic |
| TGATACCAGCTAATGATTCA+AGG | 0.474056 | 4_1:-66520493 | None:intergenic |
| GAGCTTGCTGGCACTGCCAA+AGG | 0.478600 | 4_1:+66520674 | Msa0565640:CDS |
| TCCTGAAGGTTTGCTGGAGA+AGG | 0.484851 | 4_1:+66520985 | Msa0565640:CDS |
| GTTGTTGGAGATCAATCATC+TGG | 0.485196 | 4_1:+66520458 | Msa0565640:CDS |
| AGCTTGAAGCACATGCTGAA+TGG | 0.486139 | 4_1:-66521758 | None:intergenic |
| TTATACTCCAAAACAAGCTC+TGG | 0.492061 | 4_1:-66520590 | None:intergenic |
| TATCAAAGTCAGTGGGGTGT+TGG | 0.492352 | 4_1:-66520702 | None:intergenic |
| TCCAATCCTGTCCATAATGT+TGG | 0.494024 | 4_1:-66522235 | None:intergenic |
| TTATCAGGTTGACCATGAAC+AGG | 0.495576 | 4_1:-66520785 | None:intergenic |
| GCGTCTCAACATTGCTAAAG+AGG | 0.501157 | 4_1:+66520412 | Msa0565640:CDS |
| TGCCACTAAGGATTTCCTAA+TGG | 0.506730 | 4_1:+66521480 | Msa0565640:CDS |
| TGTGTGGATATTTCATAAGC+TGG | 0.507052 | 4_1:-66521942 | None:intergenic |
| ACAATTGGTGCAATAGATAG+AGG | 0.511162 | 4_1:-66520335 | None:intergenic |
| GTTTGTGTAAGGAATCGAAT+TGG | 0.512590 | 4_1:+66521043 | Msa0565640:CDS |
| GGTGCAATAGATAGAGGTTG+AGG | 0.516825 | 4_1:-66520329 | None:intergenic |
| CTTATTGGAAAATTGTGCTC+CGG | 0.520290 | 4_1:+66522004 | Msa0565640:CDS |
| GCCAGTGAGGATAAATTAGC+AGG | 0.522213 | 4_1:-66521280 | None:intergenic |
| AGATCAACCATAGTAAGATC+AGG | 0.522883 | 4_1:-66520743 | None:intergenic |
| AGTGTCCTTGAATCATTAGC+TGG | 0.523168 | 4_1:+66520488 | Msa0565640:CDS |
| TCCAAAACAAGCTCTGGCTG+TGG | 0.524796 | 4_1:-66520584 | None:intergenic |
| TGTTGAAAGTAATGCCACTA+AGG | 0.528407 | 4_1:+66521468 | Msa0565640:CDS |
| GCCAACATTATGGACAGGAT+TGG | 0.530993 | 4_1:+66522234 | Msa0565640:CDS |
| AATGAACTGTTATCAGCAAA+TGG | 0.537861 | 4_1:+66522108 | Msa0565640:CDS |
| ATCAGCTTGCCACGTGGACA+AGG | 0.540401 | 4_1:+66520512 | Msa0565640:CDS |
| TCAGATTAAGGATATTATCA+TGG | 0.543580 | 4_1:+66520817 | Msa0565640:CDS |
| GGAGGAAATCAAAGTTCTTG+AGG | 0.547046 | 4_1:+66521501 | Msa0565640:CDS |
| AGCTTGCTGGCACTGCCAAA+GGG | 0.547647 | 4_1:+66520675 | Msa0565640:CDS |
| TCTCCAACAACAACAATGGT+TGG | 0.551269 | 4_1:-66520446 | None:intergenic |
| TGTGAATGTTGATCTGCAAA+AGG | 0.555960 | 4_1:+66522077 | Msa0565640:CDS |
| AGTGTCACACACTTCTGTCC+AGG | 0.565122 | 4_1:+66521113 | Msa0565640:CDS |
| ACTTTGATAGTAAAGAAGAA+TGG | 0.569006 | 4_1:+66520716 | Msa0565640:CDS |
| CACTAAGGATTTCCTAATGG+AGG | 0.576778 | 4_1:+66521483 | Msa0565640:CDS |
| AGTGCCAGCAAGCTCCTCAG+TGG | 0.578957 | 4_1:-66520666 | None:intergenic |
| TTCTTTACTATCAAAGTCAG+TGG | 0.579933 | 4_1:-66520710 | None:intergenic |
| TATACTCCTCCAAGTACTCA+GGG | 0.581284 | 4_1:-66521816 | None:intergenic |
| CCGTGGCCAACATTATGGAC+AGG | 0.581354 | 4_1:+66522229 | Msa0565640:CDS |
| CAATCACATCAATTAACCTC+CGG | 0.585742 | 4_1:-66522023 | None:intergenic |
| CGTCTCAACATTGCTAAAGA+GGG | 0.585949 | 4_1:+66520413 | Msa0565640:CDS |
| AGGAGTCTCCTTCAATATCA+GGG | 0.586223 | 4_1:+66522154 | Msa0565640:CDS |
| ATGTAACCCTGAGTACTTGG+AGG | 0.589927 | 4_1:+66521810 | Msa0565640:CDS |
| CCTGTCCATAATGTTGGCCA+CGG | 0.590976 | 4_1:-66522229 | None:intergenic |
| GTGGACAAGGAATTTGTACA+AGG | 0.592993 | 4_1:+66520525 | Msa0565640:CDS |
| TCAAGTACTGTGAAGCTGCA+AGG | 0.596633 | 4_1:+66521898 | Msa0565640:CDS |
| GGACAGGATTGGAAATTATG+GGG | 0.597404 | 4_1:+66522245 | Msa0565640:CDS |
| AAGGCTGATAAATCTCCTGA+AGG | 0.599516 | 4_1:+66520971 | Msa0565640:CDS |
| CAAACAACTTTCAACTGATG+AGG | 0.601066 | 4_1:+66520616 | Msa0565640:CDS |
| AACGCTTGCTGTCGTGACAA+AGG | 0.611997 | 4_1:+66520952 | Msa0565640:CDS |
| ACTGTGAAGCTGCAAGGTGT+TGG | 0.613991 | 4_1:+66521904 | Msa0565640:CDS |
| ACAGGAACACGAGTTATACC+TGG | 0.615115 | 4_1:-66520767 | None:intergenic |
| TGGTGTTGAGAGGCTGCTTG+AGG | 0.618613 | 4_1:+66522134 | Msa0565640:CDS |
| TGTGCTTCAAGCTGTTGAGA+TGG | 0.619725 | 4_1:+66521768 | Msa0565640:CDS |
| TAAGCCTGATTCAACATGTG+TGG | 0.620737 | 4_1:-66521958 | None:intergenic |
| ATTGGAAAATTGTGCTCCGG+AGG | 0.621567 | 4_1:+66522007 | Msa0565640:CDS |
| GGAGGAGTATAACAAGCTGA+TGG | 0.621625 | 4_1:+66521828 | Msa0565640:CDS |
| ACAGCTGACGATGTTAACAT+TGG | 0.623909 | 4_1:+66521010 | Msa0565640:CDS |
| AAGAGTCTTACGAAGATGCA+AGG | 0.624326 | 4_1:+66521068 | Msa0565640:CDS |
| GATTTGCAGAAAAGCTGACA+TGG | 0.626155 | 4_1:-66521308 | None:intergenic |
| CTGTTATCAGCAAATGGTGG+TGG | 0.626367 | 4_1:+66522114 | Msa0565640:CDS |
| CAAATGGTGGTGGTGTTGAG+AGG | 0.637671 | 4_1:+66522124 | Msa0565640:CDS |
| GAAAGAAAGCAAAGAGACCG+TGG | 0.645229 | 4_1:+66522212 | Msa0565640:CDS |
| TTGATCTCCAACAACAACAA+TGG | 0.648908 | 4_1:-66520450 | None:intergenic |
| GTACAAATTCCTTGTCCACG+TGG | 0.660130 | 4_1:-66520521 | None:intergenic |
| TGACATGGCATCAGCCAGTG+AGG | 0.671512 | 4_1:-66521293 | None:intergenic |
| TGCTATAAATACAGCCACTG+AGG | 0.694192 | 4_1:+66520652 | Msa0565640:CDS |
| CTTTACTATCAAAGTCAGTG+GGG | 0.697240 | 4_1:-66520708 | None:intergenic |
| GCTGGTATCAGCTTGCCACG+TGG | 0.699523 | 4_1:+66520506 | Msa0565640:CDS |
| GTTGATCATCAACATCAACA+TGG | 0.706155 | 4_1:-66520307 | None:intergenic |
| TGGAAACAAGAGTTCCACAA+AGG | 0.707464 | 4_1:+66520247 | Msa0565640:CDS |
| TTACTTCAGAGAAAAGTTAG+GGG | 0.725881 | 4_1:+66521577 | Msa0565640:CDS |
| TGGACAAGGAATTTGTACAA+GGG | 0.728664 | 4_1:+66520526 | Msa0565640:CDS |
| GAACTGTTATCAGCAAATGG+TGG | 0.747464 | 4_1:+66522111 | Msa0565640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATAAGAAGATACAAT+TGG | - | chr4_1:66520353-66520372 | None:intergenic | 20.0% |
| !! | TAACATTTATGATCAGATTA+AGG | + | chr4_1:66520805-66520824 | Msa0565640:CDS | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | + | chr4_1:66521352-66521371 | Msa0565640:CDS | 20.0% |
| !! | ACACTTTCAACAAAATTAAT+TGG | - | chr4_1:66521616-66521635 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | + | chr4_1:66521617-66521636 | Msa0565640:CDS | 20.0% |
| !! | TCATTATAAGAAGATACAAT+TGG | - | chr4_1:66520353-66520372 | None:intergenic | 20.0% |
| !! | TAACATTTATGATCAGATTA+AGG | + | chr4_1:66520805-66520824 | Msa0565640:CDS | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | + | chr4_1:66521352-66521371 | Msa0565640:CDS | 20.0% |
| !! | ACACTTTCAACAAAATTAAT+TGG | - | chr4_1:66521616-66521635 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | + | chr4_1:66521617-66521636 | Msa0565640:CDS | 20.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | + | chr4_1:66520716-66520735 | Msa0565640:CDS | 25.0% |
| ! | ATCTGATCATAAATGTTATC+AGG | - | chr4_1:66520803-66520822 | None:intergenic | 25.0% |
| ! | TCAGATTAAGGATATTATCA+TGG | + | chr4_1:66520817-66520836 | Msa0565640:CDS | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | - | chr4_1:66520854-66520873 | None:intergenic | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | - | chr4_1:66521220-66521239 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | + | chr4_1:66521228-66521247 | Msa0565640:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | - | chr4_1:66521735-66521754 | None:intergenic | 25.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | + | chr4_1:66520716-66520735 | Msa0565640:CDS | 25.0% |
| ! | ATCTGATCATAAATGTTATC+AGG | - | chr4_1:66520803-66520822 | None:intergenic | 25.0% |
| ! | TCAGATTAAGGATATTATCA+TGG | + | chr4_1:66520817-66520836 | Msa0565640:CDS | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | - | chr4_1:66520854-66520873 | None:intergenic | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | - | chr4_1:66521220-66521239 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | + | chr4_1:66521228-66521247 | Msa0565640:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | - | chr4_1:66521735-66521754 | None:intergenic | 25.0% |
| TTGATGCTCTTGAAAATCTA+AGG | + | chr4_1:66520390-66520409 | Msa0565640:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | - | chr4_1:66520712-66520731 | None:intergenic | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | - | chr4_1:66520713-66520732 | None:intergenic | 30.0% | |
| ! | TCACAAACTGTTGATAAAAC+TGG | + | chr4_1:66520923-66520942 | Msa0565640:CDS | 30.0% |
| AACAATAGATTTGTCTATCC+TGG | - | chr4_1:66521134-66521153 | None:intergenic | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | + | chr4_1:66521133-66521152 | Msa0565640:CDS | 30.0% | |
| ! | TATTGTTGGAATTCCTGTTT+TGG | + | chr4_1:66521147-66521166 | Msa0565640:CDS | 30.0% |
| ATTCGGAAGACCAATAAATT+TGG | - | chr4_1:66521530-66521549 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | + | chr4_1:66521576-66521595 | Msa0565640:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | + | chr4_1:66521577-66521596 | Msa0565640:CDS | 30.0% | |
| ! | TGAAAGTGTATGGAATTATC+TGG | + | chr4_1:66521627-66521646 | Msa0565640:CDS | 30.0% |
| TTCTAACTATTATCAGCTTC+AGG | + | chr4_1:66521684-66521703 | Msa0565640:CDS | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | + | chr4_1:66522108-66522127 | Msa0565640:CDS | 30.0% | |
| TTGATGCTCTTGAAAATCTA+AGG | + | chr4_1:66520390-66520409 | Msa0565640:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | - | chr4_1:66520712-66520731 | None:intergenic | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | - | chr4_1:66520713-66520732 | None:intergenic | 30.0% | |
| ! | TCACAAACTGTTGATAAAAC+TGG | + | chr4_1:66520923-66520942 | Msa0565640:CDS | 30.0% |
| AACAATAGATTTGTCTATCC+TGG | - | chr4_1:66521134-66521153 | None:intergenic | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | + | chr4_1:66521133-66521152 | Msa0565640:CDS | 30.0% | |
| ! | TATTGTTGGAATTCCTGTTT+TGG | + | chr4_1:66521147-66521166 | Msa0565640:CDS | 30.0% |
| ATTCGGAAGACCAATAAATT+TGG | - | chr4_1:66521530-66521549 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | + | chr4_1:66521576-66521595 | Msa0565640:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | + | chr4_1:66521577-66521596 | Msa0565640:CDS | 30.0% | |
| ! | TGAAAGTGTATGGAATTATC+TGG | + | chr4_1:66521627-66521646 | Msa0565640:CDS | 30.0% |
| TTCTAACTATTATCAGCTTC+AGG | + | chr4_1:66521684-66521703 | Msa0565640:CDS | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | + | chr4_1:66522108-66522127 | Msa0565640:CDS | 30.0% | |
| ! | ATCAAGTTTGTTTGCCTTTG+TGG | - | chr4_1:66520264-66520283 | None:intergenic | 35.0% |
| GTTGATCATCAACATCAACA+TGG | - | chr4_1:66520310-66520329 | None:intergenic | 35.0% | |
| ACAATTGGTGCAATAGATAG+AGG | - | chr4_1:66520338-66520357 | None:intergenic | 35.0% | |
| TTGATCTCCAACAACAACAA+TGG | - | chr4_1:66520453-66520472 | None:intergenic | 35.0% | |
| TGATACCAGCTAATGATTCA+AGG | - | chr4_1:66520496-66520515 | None:intergenic | 35.0% | |
| TGGACAAGGAATTTGTACAA+GGG | + | chr4_1:66520526-66520545 | Msa0565640:CDS | 35.0% | |
| !! | AATTTGTACAAGGGTACCTT+TGG | + | chr4_1:66520535-66520554 | Msa0565640:CDS | 35.0% |
| TTATACTCCAAAACAAGCTC+TGG | - | chr4_1:66520593-66520612 | None:intergenic | 35.0% | |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | + | chr4_1:66520593-66520612 | Msa0565640:CDS | 35.0% |
| CAAACAACTTTCAACTGATG+AGG | + | chr4_1:66520616-66520635 | Msa0565640:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | - | chr4_1:66520711-66520730 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | - | chr4_1:66520746-66520765 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | + | chr4_1:66520897-66520916 | Msa0565640:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | + | chr4_1:66521032-66521051 | Msa0565640:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | + | chr4_1:66521043-66521062 | Msa0565640:CDS | 35.0% | |
| TGTTGAAAGTAATGCCACTA+AGG | + | chr4_1:66521468-66521487 | Msa0565640:CDS | 35.0% | |
| ! | GAACTTTGATTTCCTCCATT+AGG | - | chr4_1:66521498-66521517 | None:intergenic | 35.0% |
| CTTGAGGAAGCCAAATTTAT+TGG | + | chr4_1:66521517-66521536 | Msa0565640:CDS | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | - | chr4_1:66521578-66521597 | None:intergenic | 35.0% |
| CCTTACTTCAGAGAAAAGTT+AGG | + | chr4_1:66521575-66521594 | Msa0565640:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | - | chr4_1:66521945-66521964 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | + | chr4_1:66521954-66521973 | Msa0565640:CDS | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | + | chr4_1:66521969-66521988 | Msa0565640:CDS | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | - | chr4_1:66521995-66522014 | None:intergenic | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | + | chr4_1:66522004-66522023 | Msa0565640:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | - | chr4_1:66522026-66522045 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | + | chr4_1:66522077-66522096 | Msa0565640:CDS | 35.0% | |
| ATGGACAGGATTGGAAATTA+TGG | + | chr4_1:66522243-66522262 | Msa0565640:CDS | 35.0% | |
| TGGACAGGATTGGAAATTAT+GGG | + | chr4_1:66522244-66522263 | Msa0565640:CDS | 35.0% | |
| ! | ATCAAGTTTGTTTGCCTTTG+TGG | - | chr4_1:66520264-66520283 | None:intergenic | 35.0% |
| GTTGATCATCAACATCAACA+TGG | - | chr4_1:66520310-66520329 | None:intergenic | 35.0% | |
| ACAATTGGTGCAATAGATAG+AGG | - | chr4_1:66520338-66520357 | None:intergenic | 35.0% | |
| TTGATCTCCAACAACAACAA+TGG | - | chr4_1:66520453-66520472 | None:intergenic | 35.0% | |
| TGATACCAGCTAATGATTCA+AGG | - | chr4_1:66520496-66520515 | None:intergenic | 35.0% | |
| TGGACAAGGAATTTGTACAA+GGG | + | chr4_1:66520526-66520545 | Msa0565640:CDS | 35.0% | |
| !! | AATTTGTACAAGGGTACCTT+TGG | + | chr4_1:66520535-66520554 | Msa0565640:CDS | 35.0% |
| TTATACTCCAAAACAAGCTC+TGG | - | chr4_1:66520593-66520612 | None:intergenic | 35.0% | |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | + | chr4_1:66520593-66520612 | Msa0565640:CDS | 35.0% |
| CAAACAACTTTCAACTGATG+AGG | + | chr4_1:66520616-66520635 | Msa0565640:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | - | chr4_1:66520711-66520730 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | - | chr4_1:66520746-66520765 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | + | chr4_1:66520897-66520916 | Msa0565640:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | + | chr4_1:66521032-66521051 | Msa0565640:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | + | chr4_1:66521043-66521062 | Msa0565640:CDS | 35.0% | |
| TGTTGAAAGTAATGCCACTA+AGG | + | chr4_1:66521468-66521487 | Msa0565640:CDS | 35.0% | |
| ! | GAACTTTGATTTCCTCCATT+AGG | - | chr4_1:66521498-66521517 | None:intergenic | 35.0% |
| CTTGAGGAAGCCAAATTTAT+TGG | + | chr4_1:66521517-66521536 | Msa0565640:CDS | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | - | chr4_1:66521578-66521597 | None:intergenic | 35.0% |
| CCTTACTTCAGAGAAAAGTT+AGG | + | chr4_1:66521575-66521594 | Msa0565640:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | - | chr4_1:66521945-66521964 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | + | chr4_1:66521954-66521973 | Msa0565640:CDS | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | + | chr4_1:66521969-66521988 | Msa0565640:CDS | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | - | chr4_1:66521995-66522014 | None:intergenic | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | + | chr4_1:66522004-66522023 | Msa0565640:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | - | chr4_1:66522026-66522045 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | + | chr4_1:66522077-66522096 | Msa0565640:CDS | 35.0% | |
| ATGGACAGGATTGGAAATTA+TGG | + | chr4_1:66522243-66522262 | Msa0565640:CDS | 35.0% | |
| TGGACAGGATTGGAAATTAT+GGG | + | chr4_1:66522244-66522263 | Msa0565640:CDS | 35.0% | |
| TGGAAACAAGAGTTCCACAA+AGG | + | chr4_1:66520247-66520266 | Msa0565640:CDS | 40.0% | |
| !!! | TTTTCAAGAGCATCAAGCAC+TGG | - | chr4_1:66520386-66520405 | None:intergenic | 40.0% |
| CGTCTCAACATTGCTAAAGA+GGG | + | chr4_1:66520413-66520432 | Msa0565640:CDS | 40.0% | |
| ! | CTTCCAACCATTGTTGTTGT+TGG | + | chr4_1:66520443-66520462 | Msa0565640:CDS | 40.0% |
| TCTCCAACAACAACAATGGT+TGG | - | chr4_1:66520449-66520468 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCATC+TGG | + | chr4_1:66520458-66520477 | Msa0565640:CDS | 40.0% | |
| AGTGTCCTTGAATCATTAGC+TGG | + | chr4_1:66520488-66520507 | Msa0565640:CDS | 40.0% | |
| GTGGACAAGGAATTTGTACA+AGG | + | chr4_1:66520525-66520544 | Msa0565640:CDS | 40.0% | |
| ! | TTTTGCAGCCTCATAACCAA+AGG | - | chr4_1:66520554-66520573 | None:intergenic | 40.0% |
| TGCTATAAATACAGCCACTG+AGG | + | chr4_1:66520652-66520671 | Msa0565640:CDS | 40.0% | |
| TGGAGTTCCTGATCTTACTA+TGG | + | chr4_1:66520736-66520755 | Msa0565640:CDS | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | + | chr4_1:66520749-66520768 | Msa0565640:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | + | chr4_1:66520773-66520792 | Msa0565640:CDS | 40.0% | |
| !! | TTATCAGGTTGACCATGAAC+AGG | - | chr4_1:66520788-66520807 | None:intergenic | 40.0% |
| AAGGCTGATAAATCTCCTGA+AGG | + | chr4_1:66520971-66520990 | Msa0565640:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | + | chr4_1:66520979-66520998 | Msa0565640:CDS | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | + | chr4_1:66521010-66521029 | Msa0565640:CDS | 40.0% | |
| ! | GACGATGTTAACATTGGTCT+TGG | + | chr4_1:66521016-66521035 | Msa0565640:CDS | 40.0% |
| AAGAGTCTTACGAAGATGCA+AGG | + | chr4_1:66521068-66521087 | Msa0565640:CDS | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | - | chr4_1:66521163-66521182 | None:intergenic | 40.0% |
| GATTTGCAGAAAAGCTGACA+TGG | - | chr4_1:66521311-66521330 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | + | chr4_1:66521480-66521499 | Msa0565640:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | - | chr4_1:66521485-66521504 | None:intergenic | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | + | chr4_1:66521483-66521502 | Msa0565640:CDS | 40.0% | |
| GGAGGAAATCAAAGTTCTTG+AGG | + | chr4_1:66521501-66521520 | Msa0565640:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | - | chr4_1:66521547-66521566 | None:intergenic | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | - | chr4_1:66521559-66521578 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | - | chr4_1:66521819-66521838 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | - | chr4_1:66521820-66521839 | None:intergenic | 40.0% | |
| TAAGCCTGATTCAACATGTG+TGG | - | chr4_1:66521961-66521980 | None:intergenic | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | + | chr4_1:66522111-66522130 | Msa0565640:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | + | chr4_1:66522154-66522173 | Msa0565640:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | - | chr4_1:66522165-66522184 | None:intergenic | 40.0% | |
| TCCAATCCTGTCCATAATGT+TGG | - | chr4_1:66522238-66522257 | None:intergenic | 40.0% | |
| GGACAGGATTGGAAATTATG+GGG | + | chr4_1:66522245-66522264 | Msa0565640:CDS | 40.0% | |
| TGGAAACAAGAGTTCCACAA+AGG | + | chr4_1:66520247-66520266 | Msa0565640:CDS | 40.0% | |
| !!! | TTTTCAAGAGCATCAAGCAC+TGG | - | chr4_1:66520386-66520405 | None:intergenic | 40.0% |
| CGTCTCAACATTGCTAAAGA+GGG | + | chr4_1:66520413-66520432 | Msa0565640:CDS | 40.0% | |
| ! | CTTCCAACCATTGTTGTTGT+TGG | + | chr4_1:66520443-66520462 | Msa0565640:CDS | 40.0% |
| TCTCCAACAACAACAATGGT+TGG | - | chr4_1:66520449-66520468 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCATC+TGG | + | chr4_1:66520458-66520477 | Msa0565640:CDS | 40.0% | |
| AGTGTCCTTGAATCATTAGC+TGG | + | chr4_1:66520488-66520507 | Msa0565640:CDS | 40.0% | |
| GTGGACAAGGAATTTGTACA+AGG | + | chr4_1:66520525-66520544 | Msa0565640:CDS | 40.0% | |
| ! | TTTTGCAGCCTCATAACCAA+AGG | - | chr4_1:66520554-66520573 | None:intergenic | 40.0% |
| TGCTATAAATACAGCCACTG+AGG | + | chr4_1:66520652-66520671 | Msa0565640:CDS | 40.0% | |
| TGGAGTTCCTGATCTTACTA+TGG | + | chr4_1:66520736-66520755 | Msa0565640:CDS | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | + | chr4_1:66520749-66520768 | Msa0565640:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | + | chr4_1:66520773-66520792 | Msa0565640:CDS | 40.0% | |
| !! | TTATCAGGTTGACCATGAAC+AGG | - | chr4_1:66520788-66520807 | None:intergenic | 40.0% |
| AAGGCTGATAAATCTCCTGA+AGG | + | chr4_1:66520971-66520990 | Msa0565640:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | + | chr4_1:66520979-66520998 | Msa0565640:CDS | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | + | chr4_1:66521010-66521029 | Msa0565640:CDS | 40.0% | |
| ! | GACGATGTTAACATTGGTCT+TGG | + | chr4_1:66521016-66521035 | Msa0565640:CDS | 40.0% |
| AAGAGTCTTACGAAGATGCA+AGG | + | chr4_1:66521068-66521087 | Msa0565640:CDS | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | - | chr4_1:66521163-66521182 | None:intergenic | 40.0% |
| GATTTGCAGAAAAGCTGACA+TGG | - | chr4_1:66521311-66521330 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | + | chr4_1:66521480-66521499 | Msa0565640:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | - | chr4_1:66521485-66521504 | None:intergenic | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | + | chr4_1:66521483-66521502 | Msa0565640:CDS | 40.0% | |
| GGAGGAAATCAAAGTTCTTG+AGG | + | chr4_1:66521501-66521520 | Msa0565640:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | - | chr4_1:66521547-66521566 | None:intergenic | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | - | chr4_1:66521559-66521578 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | - | chr4_1:66521819-66521838 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | - | chr4_1:66521820-66521839 | None:intergenic | 40.0% | |
| TAAGCCTGATTCAACATGTG+TGG | - | chr4_1:66521961-66521980 | None:intergenic | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | + | chr4_1:66522111-66522130 | Msa0565640:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | + | chr4_1:66522154-66522173 | Msa0565640:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | - | chr4_1:66522165-66522184 | None:intergenic | 40.0% | |
| TCCAATCCTGTCCATAATGT+TGG | - | chr4_1:66522238-66522257 | None:intergenic | 40.0% | |
| GGACAGGATTGGAAATTATG+GGG | + | chr4_1:66522245-66522264 | Msa0565640:CDS | 40.0% | |
| GGTGCAATAGATAGAGGTTG+AGG | - | chr4_1:66520332-66520351 | None:intergenic | 45.0% | |
| GCGTCTCAACATTGCTAAAG+AGG | + | chr4_1:66520412-66520431 | Msa0565640:CDS | 45.0% | |
| GTACAAATTCCTTGTCCACG+TGG | - | chr4_1:66520524-66520543 | None:intergenic | 45.0% | |
| !! | CAAGGGTACCTTTGGTTATG+AGG | + | chr4_1:66520543-66520562 | Msa0565640:CDS | 45.0% |
| TATCAAAGTCAGTGGGGTGT+TGG | - | chr4_1:66520705-66520724 | None:intergenic | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | - | chr4_1:66520770-66520789 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | + | chr4_1:66521279-66521298 | Msa0565640:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | - | chr4_1:66521283-66521302 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | - | chr4_1:66521761-66521780 | None:intergenic | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | + | chr4_1:66521768-66521787 | Msa0565640:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | + | chr4_1:66521807-66521826 | Msa0565640:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | + | chr4_1:66521810-66521829 | Msa0565640:CDS | 45.0% | |
| ! | GGAGGAGTATAACAAGCTGA+TGG | + | chr4_1:66521828-66521847 | Msa0565640:CDS | 45.0% |
| ! | TCAAGTACTGTGAAGCTGCA+AGG | + | chr4_1:66521898-66521917 | Msa0565640:CDS | 45.0% |
| AGGCCAGATTGACAGCTTAT+TGG | + | chr4_1:66521989-66522008 | Msa0565640:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | + | chr4_1:66522007-66522026 | Msa0565640:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | + | chr4_1:66522114-66522133 | Msa0565640:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | + | chr4_1:66522153-66522172 | Msa0565640:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | + | chr4_1:66522212-66522231 | Msa0565640:CDS | 45.0% | |
| GCCAACATTATGGACAGGAT+TGG | + | chr4_1:66522234-66522253 | Msa0565640:CDS | 45.0% | |
| GGTGCAATAGATAGAGGTTG+AGG | - | chr4_1:66520332-66520351 | None:intergenic | 45.0% | |
| GCGTCTCAACATTGCTAAAG+AGG | + | chr4_1:66520412-66520431 | Msa0565640:CDS | 45.0% | |
| GTACAAATTCCTTGTCCACG+TGG | - | chr4_1:66520524-66520543 | None:intergenic | 45.0% | |
| !! | CAAGGGTACCTTTGGTTATG+AGG | + | chr4_1:66520543-66520562 | Msa0565640:CDS | 45.0% |
| TATCAAAGTCAGTGGGGTGT+TGG | - | chr4_1:66520705-66520724 | None:intergenic | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | - | chr4_1:66520770-66520789 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | + | chr4_1:66521279-66521298 | Msa0565640:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | - | chr4_1:66521283-66521302 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | - | chr4_1:66521761-66521780 | None:intergenic | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | + | chr4_1:66521768-66521787 | Msa0565640:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | + | chr4_1:66521807-66521826 | Msa0565640:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | + | chr4_1:66521810-66521829 | Msa0565640:CDS | 45.0% | |
| ! | GGAGGAGTATAACAAGCTGA+TGG | + | chr4_1:66521828-66521847 | Msa0565640:CDS | 45.0% |
| ! | TCAAGTACTGTGAAGCTGCA+AGG | + | chr4_1:66521898-66521917 | Msa0565640:CDS | 45.0% |
| AGGCCAGATTGACAGCTTAT+TGG | + | chr4_1:66521989-66522008 | Msa0565640:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | + | chr4_1:66522007-66522026 | Msa0565640:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | + | chr4_1:66522114-66522133 | Msa0565640:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | + | chr4_1:66522153-66522172 | Msa0565640:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | + | chr4_1:66522212-66522231 | Msa0565640:CDS | 45.0% | |
| GCCAACATTATGGACAGGAT+TGG | + | chr4_1:66522234-66522253 | Msa0565640:CDS | 45.0% | |
| GCTCTGGCTGTGGAAGTAAA+TGG | - | chr4_1:66520577-66520596 | None:intergenic | 50.0% | |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | + | chr4_1:66520583-66520602 | Msa0565640:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | - | chr4_1:66520587-66520606 | None:intergenic | 50.0% |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | - | chr4_1:66520693-66520712 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | + | chr4_1:66520952-66520971 | Msa0565640:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | + | chr4_1:66520985-66521004 | Msa0565640:CDS | 50.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | - | chr4_1:66520989-66521008 | None:intergenic | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | + | chr4_1:66521113-66521132 | Msa0565640:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | + | chr4_1:66521249-66521268 | Msa0565640:CDS | 50.0% |
| ACTGTGAAGCTGCAAGGTGT+TGG | + | chr4_1:66521904-66521923 | Msa0565640:CDS | 50.0% | |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | + | chr4_1:66522124-66522143 | Msa0565640:CDS | 50.0% |
| GGAAGAGACAGAAGTTGAGC+AGG | + | chr4_1:66522175-66522194 | Msa0565640:CDS | 50.0% | |
| AGAGACCGTGGCCAACATTA+TGG | + | chr4_1:66522224-66522243 | Msa0565640:CDS | 50.0% | |
| CCTGTCCATAATGTTGGCCA+CGG | - | chr4_1:66522232-66522251 | None:intergenic | 50.0% | |
| GCTCTGGCTGTGGAAGTAAA+TGG | - | chr4_1:66520577-66520596 | None:intergenic | 50.0% | |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | + | chr4_1:66520583-66520602 | Msa0565640:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | - | chr4_1:66520587-66520606 | None:intergenic | 50.0% |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | - | chr4_1:66520693-66520712 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | + | chr4_1:66520952-66520971 | Msa0565640:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | + | chr4_1:66520985-66521004 | Msa0565640:CDS | 50.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | - | chr4_1:66520989-66521008 | None:intergenic | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | + | chr4_1:66521113-66521132 | Msa0565640:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | + | chr4_1:66521249-66521268 | Msa0565640:CDS | 50.0% |
| ACTGTGAAGCTGCAAGGTGT+TGG | + | chr4_1:66521904-66521923 | Msa0565640:CDS | 50.0% | |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | + | chr4_1:66522124-66522143 | Msa0565640:CDS | 50.0% |
| GGAAGAGACAGAAGTTGAGC+AGG | + | chr4_1:66522175-66522194 | Msa0565640:CDS | 50.0% | |
| AGAGACCGTGGCCAACATTA+TGG | + | chr4_1:66522224-66522243 | Msa0565640:CDS | 50.0% | |
| CCTGTCCATAATGTTGGCCA+CGG | - | chr4_1:66522232-66522251 | None:intergenic | 50.0% | |
| ATCAGCTTGCCACGTGGACA+AGG | + | chr4_1:66520512-66520531 | Msa0565640:CDS | 55.0% | |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | + | chr4_1:66520675-66520694 | Msa0565640:CDS | 55.0% |
| TGACATGGCATCAGCCAGTG+AGG | - | chr4_1:66521296-66521315 | None:intergenic | 55.0% | |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | + | chr4_1:66522134-66522153 | Msa0565640:CDS | 55.0% |
| CCGTGGCCAACATTATGGAC+AGG | + | chr4_1:66522229-66522248 | Msa0565640:CDS | 55.0% | |
| ATCAGCTTGCCACGTGGACA+AGG | + | chr4_1:66520512-66520531 | Msa0565640:CDS | 55.0% | |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | + | chr4_1:66520675-66520694 | Msa0565640:CDS | 55.0% |
| TGACATGGCATCAGCCAGTG+AGG | - | chr4_1:66521296-66521315 | None:intergenic | 55.0% | |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | + | chr4_1:66522134-66522153 | Msa0565640:CDS | 55.0% |
| CCGTGGCCAACATTATGGAC+AGG | + | chr4_1:66522229-66522248 | Msa0565640:CDS | 55.0% | |
| GCTGGTATCAGCTTGCCACG+TGG | + | chr4_1:66520506-66520525 | Msa0565640:CDS | 60.0% | |
| ACAGCCACTGAGGAGCTTGC+TGG | + | chr4_1:66520662-66520681 | Msa0565640:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | - | chr4_1:66520669-66520688 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | + | chr4_1:66520674-66520693 | Msa0565640:CDS | 60.0% |
| GCTGGTATCAGCTTGCCACG+TGG | + | chr4_1:66520506-66520525 | Msa0565640:CDS | 60.0% | |
| ACAGCCACTGAGGAGCTTGC+TGG | + | chr4_1:66520662-66520681 | Msa0565640:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | - | chr4_1:66520669-66520688 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | + | chr4_1:66520674-66520693 | Msa0565640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 66520239 | 66522275 | 66520239 | ID=Msa0565640;Name=Msa0565640 |
| chr4_1 | mRNA | 66520239 | 66522275 | 66520239 | ID=Msa0565640-mRNA-1;Parent=Msa0565640;Name=Msa0565640-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|678 |
| chr4_1 | exon | 66520239 | 66522275 | 66520239 | ID=Msa0565640-mRNA-1:exon:21615;Parent=Msa0565640-mRNA-1 |
| chr4_1 | CDS | 66520239 | 66522275 | 66520239 | ID=Msa0565640-mRNA-1:cds;Parent=Msa0565640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
