Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433790 | PNX76972.1 | 88.077 | 671 | 77 | 3 | 8 | 676 | 2 | 671 | 0.0 | 1202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433790 | sp|Q9ZP55|DRP4C_ARATH | 57.292 | 672 | 278 | 5 | 3 | 671 | 2 | 667 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433790 | A0A2K3LEM1 | 88.077 | 671 | 77 | 3 | 8 | 676 | 2 | 671 | 0.0 | 1202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa1433790 | 0.806420 | 8.298667e-50 | -8.615850e-47 |
| Msa0002580 | Msa1433790 | 0.843288 | 1.536139e-58 | -8.615850e-47 |
| Msa0015150 | Msa1433790 | 0.833051 | 6.657815e-56 | -8.615850e-47 |
| Msa0027280 | Msa1433790 | 0.801507 | 8.716222e-49 | -8.615850e-47 |
| Msa0029970 | Msa1433790 | 0.818132 | 2.299169e-52 | -8.615850e-47 |
| Msa0048510 | Msa1433790 | 0.802369 | 5.796997e-49 | -8.615850e-47 |
| Msa0050660 | Msa1433790 | 0.832402 | 9.649432e-56 | -8.615850e-47 |
| Msa0050700 | Msa1433790 | 0.835487 | 1.630960e-56 | -8.615850e-47 |
| Msa0050790 | Msa1433790 | 0.824101 | 9.687849e-54 | -8.615850e-47 |
| Msa0064120 | Msa1433790 | 0.814205 | 1.734785e-51 | -8.615850e-47 |
| Msa0071850 | Msa1433790 | 0.837775 | 4.259010e-57 | -8.615850e-47 |
| Msa0071860 | Msa1433790 | 0.836329 | 9.975634e-57 | -8.615850e-47 |
| Msa0089460 | Msa1433790 | 0.803911 | 2.780977e-49 | -8.615850e-47 |
| Msa0108880 | Msa1433790 | 0.850465 | 1.668497e-60 | -8.615850e-47 |
| Msa1372040 | Msa1433790 | 0.822719 | 2.037879e-53 | -8.615850e-47 |
| Msa1384460 | Msa1433790 | 0.821006 | 5.078155e-53 | -8.615850e-47 |
| Msa1387620 | Msa1433790 | 0.801599 | 8.343535e-49 | -8.615850e-47 |
| Msa1393780 | Msa1433790 | 0.808236 | 3.420423e-50 | -8.615850e-47 |
| Msa1400010 | Msa1433790 | 0.802580 | 5.243861e-49 | -8.615850e-47 |
| Msa1405460 | Msa1433790 | 0.822564 | 2.214560e-53 | -8.615850e-47 |
| Msa1415540 | Msa1433790 | 0.833268 | 5.881197e-56 | -8.615850e-47 |
| Msa1427100 | Msa1433790 | 0.800018 | 1.754694e-48 | -8.615850e-47 |
| Msa1433790 | Msa1433810 | 0.849861 | 2.463930e-60 | -8.615850e-47 |
| Msa1433790 | Msa1433820 | 0.804913 | 1.719266e-49 | -8.615850e-47 |
| Msa1433790 | Msa1440630 | 0.824650 | 7.193840e-54 | -8.615850e-47 |
| Msa0616210 | Msa1433790 | 0.806076 | 9.805538e-50 | -8.615850e-47 |
| Msa0655700 | Msa1433790 | 0.810248 | 1.266923e-50 | -8.615850e-47 |
| Msa0657440 | Msa1433790 | 0.966236 | 1.185901e-125 | -8.615850e-47 |
| Msa0675330 | Msa1433790 | 0.855042 | 8.226806e-62 | -8.615850e-47 |
| Msa0693890 | Msa1433790 | 0.837650 | 4.585727e-57 | -8.615850e-47 |
| Msa0699540 | Msa1433790 | 0.808662 | 2.773483e-50 | -8.615850e-47 |
| Msa0701700 | Msa1433790 | 0.815406 | 9.395710e-52 | -8.615850e-47 |
| Msa0701720 | Msa1433790 | 0.929841 | 3.889831e-93 | -8.615850e-47 |
| Msa0703710 | Msa1433790 | 0.812850 | 3.444270e-51 | -8.615850e-47 |
| Msa0703770 | Msa1433790 | 0.812475 | 4.161508e-51 | -8.615850e-47 |
| Msa0738700 | Msa1433790 | 0.824964 | 6.067363e-54 | -8.615850e-47 |
| Msa0741220 | Msa1433790 | 0.801325 | 9.495320e-49 | -8.615850e-47 |
| Msa0755930 | Msa1433790 | 0.810945 | 8.955133e-51 | -8.615850e-47 |
| Msa0819170 | Msa1433790 | 0.816516 | 5.311337e-52 | -8.615850e-47 |
| Msa0829300 | Msa1433790 | 0.808099 | 3.657544e-50 | -8.615850e-47 |
| Msa0829330 | Msa1433790 | 0.803430 | 3.498866e-49 | -8.615850e-47 |
| Msa0125210 | Msa1433790 | 0.812581 | 3.944631e-51 | -8.615850e-47 |
| Msa0188610 | Msa1433790 | 0.887060 | 1.986948e-72 | -8.615850e-47 |
| Msa0230800 | Msa1433790 | 0.863402 | 2.553631e-64 | -8.615850e-47 |
| Msa0230870 | Msa1433790 | 0.868632 | 5.654236e-66 | -8.615850e-47 |
| Msa1265650 | Msa1433790 | 0.843490 | 1.356801e-58 | -8.615850e-47 |
| Msa1268630 | Msa1433790 | 0.829582 | 4.748179e-55 | -8.615850e-47 |
| Msa1303560 | Msa1433790 | 0.834796 | 2.435912e-56 | -8.615850e-47 |
| Msa1303650 | Msa1433790 | 0.837048 | 6.539807e-57 | -8.615850e-47 |
| Msa1315160 | Msa1433790 | 0.802741 | 4.857480e-49 | -8.615850e-47 |
| Msa0369790 | Msa1433790 | 0.815528 | 8.826636e-52 | -8.615850e-47 |
| Msa0405680 | Msa1433790 | 0.847891 | 8.678241e-60 | -8.615850e-47 |
| Msa0418970 | Msa1433790 | 0.840586 | 7.953183e-58 | -8.615850e-47 |
| Msa0435210 | Msa1433790 | 0.817833 | 2.685488e-52 | -8.615850e-47 |
| Msa0436910 | Msa1433790 | 0.850261 | 1.903764e-60 | -8.615850e-47 |
| Msa0460550 | Msa1433790 | 0.823554 | 1.301437e-53 | -8.615850e-47 |
| Msa0464000 | Msa1433790 | 0.815915 | 7.238066e-52 | -8.615850e-47 |
| Msa0472950 | Msa1433790 | 0.831242 | 1.864915e-55 | -8.615850e-47 |
| Msa0479320 | Msa1433790 | 0.810864 | 9.325961e-51 | -8.615850e-47 |
| Msa1009950 | Msa1433790 | 0.815510 | 8.909000e-52 | -8.615850e-47 |
| Msa1042160 | Msa1433790 | 0.805267 | 1.449518e-49 | -8.615850e-47 |
| Msa1042190 | Msa1433790 | 0.806867 | 6.676214e-50 | -8.615850e-47 |
| Msa1068920 | Msa1433790 | 0.808365 | 3.210393e-50 | -8.615850e-47 |
| Msa1078820 | Msa1433790 | 0.851824 | 6.897909e-61 | -8.615850e-47 |
| Msa1081690 | Msa1433790 | 0.811845 | 5.709495e-51 | -8.615850e-47 |
| Msa1105640 | Msa1433790 | 0.822320 | 2.523274e-53 | -8.615850e-47 |
| Msa0244640 | Msa1433790 | 0.803190 | 3.922972e-49 | -8.615850e-47 |
| Msa0270340 | Msa1433790 | 0.871332 | 7.410822e-67 | -8.615850e-47 |
| Msa0325540 | Msa1433790 | 0.805644 | 1.208577e-49 | -8.615850e-47 |
| Msa0330860 | Msa1433790 | 0.808958 | 2.397878e-50 | -8.615850e-47 |
| Msa1121310 | Msa1433790 | 0.813939 | 1.985839e-51 | -8.615850e-47 |
| Msa1123970 | Msa1433790 | 0.853218 | 2.763210e-61 | -8.615850e-47 |
| Msa1169650 | Msa1433790 | 0.844859 | 5.821996e-59 | -8.615850e-47 |
| Msa1223570 | Msa1433790 | 0.820987 | 5.129670e-53 | -8.615850e-47 |
| Msa0509550 | Msa1433790 | 0.810074 | 1.380783e-50 | -8.615850e-47 |
| Msa0517250 | Msa1433790 | 0.804973 | 1.670229e-49 | -8.615850e-47 |
| Msa0528570 | Msa1433790 | 0.839118 | 1.917930e-57 | -8.615850e-47 |
| Msa0529030 | Msa1433790 | 0.826712 | 2.333291e-54 | -8.615850e-47 |
| Msa0541300 | Msa1433790 | 0.866548 | 2.631734e-65 | -8.615850e-47 |
| Msa0541310 | Msa1433790 | 0.867126 | 1.722316e-65 | -8.615850e-47 |
| Msa0557460 | Msa1433790 | 0.816978 | 4.185296e-52 | -8.615850e-47 |
| Msa0562560 | Msa1433790 | 0.818642 | 1.762064e-52 | -8.615850e-47 |
| Msa0565640 | Msa1433790 | 0.928710 | 1.965206e-92 | -8.615850e-47 |
| Msa0565660 | Msa1433790 | 0.826887 | 2.119189e-54 | -8.615850e-47 |
| Msa0585020 | Msa1433790 | 0.853687 | 2.027297e-61 | -8.615850e-47 |
| Msa0597270 | Msa1433790 | 0.853593 | 2.156302e-61 | -8.615850e-47 |
| Msa0859290 | Msa1433790 | 0.825867 | 3.708546e-54 | -8.615850e-47 |
| Msa0921590 | Msa1433790 | 0.801364 | 9.324533e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433790 | MtrunA17_Chr8g0379961 | 86.136 | 678 | 88 | 3 | 1 | 677 | 1 | 673 | 0.0 | 1192 |
| Msa1433790 | MtrunA17_Chr8g0379941 | 82.836 | 670 | 110 | 3 | 6 | 674 | 11 | 676 | 0.0 | 1132 |
| Msa1433790 | MtrunA17_Chr8g0379951 | 92.000 | 125 | 10 | 0 | 439 | 563 | 1 | 125 | 3.02e-77 | 243 |
| Msa1433790 | MtrunA17_Chr4g0049731 | 34.577 | 402 | 236 | 13 | 67 | 452 | 35 | 425 | 7.05e-43 | 166 |
| Msa1433790 | MtrunA17_Chr2g0279671 | 37.580 | 314 | 184 | 6 | 63 | 366 | 40 | 351 | 1.40e-41 | 162 |
| Msa1433790 | MtrunA17_Chr5g0396561 | 30.128 | 468 | 291 | 15 | 69 | 518 | 35 | 484 | 2.34e-34 | 139 |
| Msa1433790 | MtrunA17_Chr8g0391891 | 35.461 | 282 | 163 | 6 | 69 | 337 | 35 | 310 | 1.14e-32 | 134 |
| Msa1433790 | MtrunA17_Chr7g0233071 | 34.700 | 317 | 181 | 9 | 69 | 369 | 40 | 346 | 8.16e-32 | 131 |
| Msa1433790 | MtrunA17_Chr8g0337041 | 35.220 | 318 | 178 | 10 | 69 | 369 | 40 | 346 | 8.49e-32 | 131 |
| Msa1433790 | MtrunA17_Chr8g0388271 | 33.956 | 321 | 178 | 10 | 69 | 369 | 34 | 340 | 9.01e-32 | 130 |
| Msa1433790 | MtrunA17_Chr4g0055051 | 34.375 | 320 | 178 | 11 | 69 | 369 | 34 | 340 | 5.09e-31 | 128 |
| Msa1433790 | MtrunA17_Chr8g0346971 | 39.904 | 208 | 105 | 6 | 69 | 264 | 34 | 233 | 2.43e-28 | 120 |
| Msa1433790 | MtrunA17_Chr8g0360401 | 29.258 | 229 | 147 | 5 | 54 | 269 | 27 | 253 | 8.48e-16 | 81.6 |
| Msa1433790 | MtrunA17_Chr1g0161401 | 28.879 | 232 | 139 | 8 | 167 | 386 | 5 | 222 | 1.89e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433790 | AT1G60500.1 | 57.292 | 672 | 278 | 5 | 3 | 671 | 2 | 667 | 0.0 | 780 |
| Msa1433790 | AT1G60530.1 | 72.069 | 290 | 73 | 1 | 18 | 307 | 19 | 300 | 3.82e-144 | 422 |
| Msa1433790 | AT2G14120.4 | 30.317 | 442 | 285 | 10 | 27 | 452 | 3 | 437 | 8.73e-40 | 156 |
| Msa1433790 | AT2G14120.1 | 30.180 | 444 | 287 | 10 | 25 | 452 | 1 | 437 | 9.75e-40 | 157 |
| Msa1433790 | AT2G14120.2 | 30.180 | 444 | 287 | 10 | 25 | 452 | 1 | 437 | 1.08e-39 | 156 |
| Msa1433790 | AT2G14120.3 | 34.125 | 337 | 204 | 6 | 25 | 346 | 1 | 334 | 1.63e-39 | 156 |
| Msa1433790 | AT4G33650.2 | 29.797 | 443 | 267 | 11 | 35 | 452 | 29 | 452 | 2.03e-39 | 156 |
| Msa1433790 | AT4G33650.1 | 29.797 | 443 | 267 | 11 | 35 | 452 | 29 | 452 | 2.04e-39 | 156 |
| Msa1433790 | AT1G14830.1 | 33.121 | 314 | 190 | 7 | 69 | 369 | 35 | 341 | 8.75e-34 | 137 |
| Msa1433790 | AT5G42080.4 | 30.258 | 466 | 293 | 13 | 69 | 518 | 34 | 483 | 7.58e-33 | 134 |
| Msa1433790 | AT5G42080.1 | 30.258 | 466 | 293 | 13 | 69 | 518 | 34 | 483 | 7.58e-33 | 134 |
| Msa1433790 | AT2G44590.3 | 24.307 | 613 | 406 | 19 | 69 | 665 | 35 | 605 | 1.16e-32 | 134 |
| Msa1433790 | AT3G60190.1 | 33.232 | 328 | 199 | 9 | 69 | 386 | 40 | 357 | 1.52e-32 | 134 |
| Msa1433790 | AT5G42080.2 | 34.505 | 313 | 187 | 8 | 69 | 369 | 34 | 340 | 4.95e-32 | 129 |
| Msa1433790 | AT5G42080.3 | 34.505 | 313 | 187 | 8 | 69 | 369 | 34 | 340 | 1.38e-31 | 130 |
| Msa1433790 | AT3G61760.3 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 3.73e-30 | 124 |
| Msa1433790 | AT3G61760.1 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 5.10e-30 | 126 |
| Msa1433790 | AT3G61760.2 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 5.52e-30 | 125 |
| Msa1433790 | AT2G44590.2 | 22.838 | 613 | 398 | 20 | 69 | 665 | 35 | 588 | 3.66e-23 | 104 |
| Msa1433790 | AT2G44590.1 | 28.875 | 329 | 195 | 10 | 69 | 386 | 35 | 335 | 2.48e-22 | 102 |
| Msa1433790 | AT1G53140.1 | 27.119 | 236 | 160 | 5 | 44 | 269 | 36 | 269 | 1.22e-14 | 78.2 |
Find 125 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTTTCAACAAAATTAAT+TGG | 0.173861 | tig0027431:-5941 | None:intergenic |
| TATGGACAGGATTGGAATTA+TGG | 0.181211 | tig0027431:+6570 | Msa1433790:CDS |
| CTTGAGGAAGCCAAATTTAT+TGG | 0.191059 | tig0027431:+5845 | Msa1433790:CDS |
| ATTCGGAAGACCAATAAATT+TGG | 0.194065 | tig0027431:-5855 | None:intergenic |
| ATCAAGTTTGTTTGCCTTTG+TGG | 0.244719 | tig0027431:-4589 | None:intergenic |
| TATTGTTGGAATTCCTGTTT+TGG | 0.276334 | tig0027431:+5475 | Msa1433790:CDS |
| GAGGAGTCTCCTTCAATATC+AGG | 0.303692 | tig0027431:+6481 | Msa1433790:CDS |
| ATCTGATCATAAATGTTATC+AGG | 0.304162 | tig0027431:-5128 | None:intergenic |
| AGGCCAGATTGACAGCTTAT+TGG | 0.313028 | tig0027431:+6317 | Msa1433790:CDS |
| TTCTAACTATTATCAGCTTC+AGG | 0.313313 | tig0027431:+6012 | Msa1433790:CDS |
| GAACTTTGATTTCCTCCATT+AGG | 0.316135 | tig0027431:-5823 | None:intergenic |
| TAACATTTATGATCAGATTA+AGG | 0.317964 | tig0027431:+5133 | Msa1433790:CDS |
| CTTCCAACCATTGTTGTTGT+TGG | 0.322456 | tig0027431:+4771 | Msa1433790:CDS |
| AGAGACCGTGGCCAACATTA+TGG | 0.325375 | tig0027431:+6552 | Msa1433790:CDS |
| TCACAAACTGTTGATAAAAC+TGG | 0.334047 | tig0027431:+5251 | Msa1433790:CDS |
| TCCACAGCCAGAGCTTGTTT+TGG | 0.338480 | tig0027431:+4911 | Msa1433790:CDS |
| CCTTACTTCAGAGAAAAGTT+AGG | 0.351453 | tig0027431:+5903 | Msa1433790:CDS |
| TGAAAGTGTATGGAATTATC+TGG | 0.352378 | tig0027431:+5955 | Msa1433790:CDS |
| CTTACTATGGTTGATCTTCC+AGG | 0.352429 | tig0027431:+5077 | Msa1433790:CDS |
| TAAGAAGATTAATGAGAAAC+TGG | 0.360082 | tig0027431:+5556 | Msa1433790:CDS |
| CAAGGGTACCTTTGGTTATG+AGG | 0.366182 | tig0027431:+4871 | Msa1433790:CDS |
| CACATGTAACCCTGAGTACT+TGG | 0.369075 | tig0027431:+6135 | Msa1433790:CDS |
| GCAGTTCTTGGCATGAAATT+CGG | 0.376721 | tig0027431:-5872 | None:intergenic |
| GCCTGCTAATTTATCCTCAC+TGG | 0.379029 | tig0027431:+5607 | Msa1433790:CDS |
| TGGAGTTCCTGATCTTACTA+TGG | 0.379945 | tig0027431:+5064 | Msa1433790:CDS |
| ATGGACAGGATTGGAATTAT+GGG | 0.380175 | tig0027431:+6571 | Msa1433790:CDS |
| GCAGCCACTGAGGAGCTTGC+TGG | 0.382789 | tig0027431:+4990 | Msa1433790:CDS |
| CTCCATTAGGAAATCCTTAG+TGG | 0.385218 | tig0027431:-5810 | None:intergenic |
| TAAATCTCCTGAAGGTTTGC+TGG | 0.387244 | tig0027431:+5307 | Msa1433790:CDS |
| TTCAAAATAATACTCTCTTC+AGG | 0.392099 | tig0027431:-5179 | None:intergenic |
| GCTCTGGCTGTGGAAGTAAA+TGG | 0.394731 | tig0027431:-4902 | None:intergenic |
| AACAATAGATTTGTCTATCC+TGG | 0.395168 | tig0027431:-5459 | None:intergenic |
| ATAACTCGTGTTCCTGTTCA+TGG | 0.396246 | tig0027431:+5101 | Msa1433790:CDS |
| ACCTTCTCCAGCAAACCTTC+AGG | 0.399453 | tig0027431:-5314 | None:intergenic |
| TTTCCAATAAGCTGTCAATC+TGG | 0.399717 | tig0027431:-6320 | None:intergenic |
| TTACTACTTGTGAGTCGATA+AGG | 0.405010 | tig0027431:+5225 | Msa1433790:CDS |
| TGTCTCTTCCCTGATATTGA+AGG | 0.410432 | tig0027431:-6490 | None:intergenic |
| TTAATCTTCTTAATGATCTC+TGG | 0.413053 | tig0027431:-5545 | None:intergenic |
| GACGATGTTAACATTGGTCT+TGG | 0.414913 | tig0027431:+5344 | Msa1433790:CDS |
| TTGATGCTCTTGAAAATCTA+AGG | 0.416842 | tig0027431:+4718 | Msa1433790:CDS |
| AATTTGTACAAGGGTACCTT+TGG | 0.424069 | tig0027431:+4863 | Msa1433790:CDS |
| AAGGTCAGAAAAGCAGTTCT+TGG | 0.424321 | tig0027431:-5884 | None:intergenic |
| GTCTTGGTTATGTTTGTGTA+AGG | 0.435750 | tig0027431:+5360 | Msa1433790:CDS |
| ATATCCACACATGTTGAATC+AGG | 0.440980 | tig0027431:+6282 | Msa1433790:CDS |
| TGGGGTGTTGGAAATCCCTT+TGG | 0.443439 | tig0027431:-5018 | None:intergenic |
| CTTACTTCAGAGAAAAGTTA+GGG | 0.447328 | tig0027431:+5904 | Msa1433790:CDS |
| GGCTACTAGTTTGCATGAGC+TGG | 0.448592 | tig0027431:+5577 | Msa1433790:CDS |
| AGGATAGACAAATCTATTGT+TGG | 0.453655 | tig0027431:+5461 | Msa1433790:CDS |
| TCATTATAAGAAGATACAAT+TGG | 0.458646 | tig0027431:-4678 | None:intergenic |
| GGAAGAGACAGAAGTTGAGC+AGG | 0.460748 | tig0027431:+6503 | Msa1433790:CDS |
| GAATCAGGCTTATGATTTGA+AGG | 0.463037 | tig0027431:+6297 | Msa1433790:CDS |
| ACAATTGGTGCAACAGATAG+AGG | 0.467988 | tig0027431:-4663 | None:intergenic |
| TCTTTACTATCAAAGTCAGT+GGG | 0.470875 | tig0027431:-5037 | None:intergenic |
| TTATACTCCTCCAAGTACTC+AGG | 0.473801 | tig0027431:-6145 | None:intergenic |
| TGATACCAGCTAATGATTCA+AGG | 0.474056 | tig0027431:-4821 | None:intergenic |
| GAGCTTGCTGGCACTGCCAA+AGG | 0.478600 | tig0027431:+5002 | Msa1433790:CDS |
| TCCTGAAGGTTTGCTGGAGA+AGG | 0.484851 | tig0027431:+5313 | Msa1433790:CDS |
| GTTGTTGGAGATCAATCATC+TGG | 0.485196 | tig0027431:+4786 | Msa1433790:CDS |
| AGCTTGAAGCACATGCTGAA+TGG | 0.486139 | tig0027431:-6086 | None:intergenic |
| TTATACTCCAAAACAAGCTC+TGG | 0.492061 | tig0027431:-4918 | None:intergenic |
| TATCAAAGTCAGTGGGGTGT+TGG | 0.492352 | tig0027431:-5030 | None:intergenic |
| TTATCAGGTTGACCATGAAC+AGG | 0.495576 | tig0027431:-5113 | None:intergenic |
| GCGTCTCAACATTGCTAAAG+AGG | 0.501157 | tig0027431:+4740 | Msa1433790:CDS |
| TGCCACTAAGGATTTCCTAA+TGG | 0.506730 | tig0027431:+5808 | Msa1433790:CDS |
| TGTGTGGATATTTCATAAGC+TGG | 0.507052 | tig0027431:-6270 | None:intergenic |
| GTTTGTGTAAGGAATCGAAT+TGG | 0.512590 | tig0027431:+5371 | Msa1433790:CDS |
| TCCAATCCTGTCCATAATGT+TGG | 0.516251 | tig0027431:-6563 | None:intergenic |
| CTTATTGGAAAATTGTGCTC+CGG | 0.520290 | tig0027431:+6332 | Msa1433790:CDS |
| GCCAGTGAGGATAAATTAGC+AGG | 0.522213 | tig0027431:-5608 | None:intergenic |
| AGATCAACCATAGTAAGATC+AGG | 0.522883 | tig0027431:-5071 | None:intergenic |
| AGTGTCCTTGAATCATTAGC+TGG | 0.523168 | tig0027431:+4816 | Msa1433790:CDS |
| TCCAAAACAAGCTCTGGCTG+TGG | 0.524796 | tig0027431:-4912 | None:intergenic |
| GGTGCAACAGATAGAGGTTG+AGG | 0.525331 | tig0027431:-4657 | None:intergenic |
| TGTTGAAAGTAATGCCACTA+AGG | 0.528407 | tig0027431:+5796 | Msa1433790:CDS |
| GCCAACATTATGGACAGGAT+TGG | 0.530993 | tig0027431:+6562 | Msa1433790:CDS |
| AATGAACTGTTATCAGCAAA+TGG | 0.537861 | tig0027431:+6436 | Msa1433790:CDS |
| ATCAGCTTGCCACGTGGACA+AGG | 0.540401 | tig0027431:+4840 | Msa1433790:CDS |
| TCAGATTAAGGATATTATCA+TGG | 0.543580 | tig0027431:+5145 | Msa1433790:CDS |
| GGAGGAAATCAAAGTTCTTG+AGG | 0.547046 | tig0027431:+5829 | Msa1433790:CDS |
| AGCTTGCTGGCACTGCCAAA+GGG | 0.547647 | tig0027431:+5003 | Msa1433790:CDS |
| TCTCCAACAACAACAATGGT+TGG | 0.551269 | tig0027431:-4774 | None:intergenic |
| TGTGAATGTTGATCTGCAAA+AGG | 0.555960 | tig0027431:+6405 | Msa1433790:CDS |
| AGTGTCACACACTTCTGTCC+AGG | 0.565122 | tig0027431:+5441 | Msa1433790:CDS |
| ACTTTGATAGTAAAGAAGAA+TGG | 0.569006 | tig0027431:+5044 | Msa1433790:CDS |
| TCAAGTACTGTGAAGCTGAA+AGG | 0.569995 | tig0027431:+6226 | Msa1433790:CDS |
| CACTAAGGATTTCCTAATGG+AGG | 0.576778 | tig0027431:+5811 | Msa1433790:CDS |
| AGTGCCAGCAAGCTCCTCAG+TGG | 0.578957 | tig0027431:-4994 | None:intergenic |
| TTCTTTACTATCAAAGTCAG+TGG | 0.579933 | tig0027431:-5038 | None:intergenic |
| TATACTCCTCCAAGTACTCA+GGG | 0.581284 | tig0027431:-6144 | None:intergenic |
| CCGTGGCCAACATTATGGAC+AGG | 0.581354 | tig0027431:+6557 | Msa1433790:CDS |
| TGAAAAGAAAATGCATTGCA+CGG | 0.584106 | tig0027431:+5724 | Msa1433790:CDS |
| CAATCACATCAATTAACCTC+CGG | 0.585742 | tig0027431:-6351 | None:intergenic |
| CGTCTCAACATTGCTAAAGA+GGG | 0.585949 | tig0027431:+4741 | Msa1433790:CDS |
| AGGAGTCTCCTTCAATATCA+GGG | 0.586223 | tig0027431:+6482 | Msa1433790:CDS |
| ATGTAACCCTGAGTACTTGG+AGG | 0.589927 | tig0027431:+6138 | Msa1433790:CDS |
| CCTGTCCATAATGTTGGCCA+CGG | 0.590976 | tig0027431:-6557 | None:intergenic |
| GTGGACAAGGAATTTGTACA+AGG | 0.592993 | tig0027431:+4853 | Msa1433790:CDS |
| AAGGCTGATAAATCTCCTGA+AGG | 0.599516 | tig0027431:+5299 | Msa1433790:CDS |
| CAAACAACTTTCAACTGATG+AGG | 0.601066 | tig0027431:+4944 | Msa1433790:CDS |
| TGGACAGGATTGGAATTATG+GGG | 0.603653 | tig0027431:+6572 | Msa1433790:CDS |
| AACGCTTGCTGTCGTGACAA+AGG | 0.611997 | tig0027431:+5280 | Msa1433790:CDS |
| ACAGGAACACGAGTTATACC+TGG | 0.615115 | tig0027431:-5095 | None:intergenic |
| TGGTGTTGAGAGGCTGCTTG+AGG | 0.618613 | tig0027431:+6462 | Msa1433790:CDS |
| TGTGCTTCAAGCTGTTGAGA+TGG | 0.619725 | tig0027431:+6096 | Msa1433790:CDS |
| TAAGCCTGATTCAACATGTG+TGG | 0.620737 | tig0027431:-6286 | None:intergenic |
| ATTGGAAAATTGTGCTCCGG+AGG | 0.621567 | tig0027431:+6335 | Msa1433790:CDS |
| GGAGGAGTATAACAAGCTGA+TGG | 0.621625 | tig0027431:+6156 | Msa1433790:CDS |
| TGCTATAAACGCAGCCACTG+AGG | 0.623567 | tig0027431:+4980 | Msa1433790:CDS |
| ACAGCTGACGATGTTAACAT+TGG | 0.623909 | tig0027431:+5338 | Msa1433790:CDS |
| AAGAGTCTTACGAAGATGCA+AGG | 0.624326 | tig0027431:+5396 | Msa1433790:CDS |
| GATTTGCAGAAAAGCAGACA+TGG | 0.624535 | tig0027431:-5636 | None:intergenic |
| CTGTTATCAGCAAATGGTGG+TGG | 0.626367 | tig0027431:+6442 | Msa1433790:CDS |
| CAAATGGTGGTGGTGTTGAG+AGG | 0.637671 | tig0027431:+6452 | Msa1433790:CDS |
| ACTGTGAAGCTGAAAGGTGT+TGG | 0.640769 | tig0027431:+6232 | Msa1433790:CDS |
| GAAAGAAAGCAAAGAGACCG+TGG | 0.645229 | tig0027431:+6540 | Msa1433790:CDS |
| TTGATCTCCAACAACAACAA+TGG | 0.648908 | tig0027431:-4778 | None:intergenic |
| GTACAAATTCCTTGTCCACG+TGG | 0.660130 | tig0027431:-4849 | None:intergenic |
| AGACATGGCATCAGCCAGTG+AGG | 0.673951 | tig0027431:-5621 | None:intergenic |
| CTTTACTATCAAAGTCAGTG+GGG | 0.697240 | tig0027431:-5036 | None:intergenic |
| GCTGGTATCAGCTTGCCACG+TGG | 0.699523 | tig0027431:+4834 | Msa1433790:CDS |
| GTTGATCATCAACATCAACA+TGG | 0.706155 | tig0027431:-4635 | None:intergenic |
| TGGAAACAAGAGTTCCACAA+AGG | 0.707464 | tig0027431:+4575 | Msa1433790:CDS |
| TTACTTCAGAGAAAAGTTAG+GGG | 0.725881 | tig0027431:+5905 | Msa1433790:CDS |
| TGGACAAGGAATTTGTACAA+GGG | 0.728664 | tig0027431:+4854 | Msa1433790:CDS |
| GAACTGTTATCAGCAAATGG+TGG | 0.747464 | tig0027431:+6439 | Msa1433790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATAAGAAGATACAAT+TGG | - | tig0027431:4681-4700 | None:intergenic | 20.0% |
| !! | TAACATTTATGATCAGATTA+AGG | + | tig0027431:5133-5152 | Msa1433790:CDS | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | + | tig0027431:5680-5699 | Msa1433790:CDS | 20.0% |
| !! | ACACTTTCAACAAAATTAAT+TGG | - | tig0027431:5944-5963 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | + | tig0027431:5945-5964 | Msa1433790:CDS | 20.0% |
| !! | TCATTATAAGAAGATACAAT+TGG | - | tig0027431:4681-4700 | None:intergenic | 20.0% |
| !! | TAACATTTATGATCAGATTA+AGG | + | tig0027431:5133-5152 | Msa1433790:CDS | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | + | tig0027431:5680-5699 | Msa1433790:CDS | 20.0% |
| !! | ACACTTTCAACAAAATTAAT+TGG | - | tig0027431:5944-5963 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | + | tig0027431:5945-5964 | Msa1433790:CDS | 20.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | + | tig0027431:5044-5063 | Msa1433790:CDS | 25.0% |
| ! | ATCTGATCATAAATGTTATC+AGG | - | tig0027431:5131-5150 | None:intergenic | 25.0% |
| ! | TCAGATTAAGGATATTATCA+TGG | + | tig0027431:5145-5164 | Msa1433790:CDS | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | - | tig0027431:5182-5201 | None:intergenic | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | - | tig0027431:5548-5567 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | + | tig0027431:5556-5575 | Msa1433790:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | - | tig0027431:6063-6082 | None:intergenic | 25.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | + | tig0027431:5044-5063 | Msa1433790:CDS | 25.0% |
| ! | ATCTGATCATAAATGTTATC+AGG | - | tig0027431:5131-5150 | None:intergenic | 25.0% |
| ! | TCAGATTAAGGATATTATCA+TGG | + | tig0027431:5145-5164 | Msa1433790:CDS | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | - | tig0027431:5182-5201 | None:intergenic | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | - | tig0027431:5548-5567 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | + | tig0027431:5556-5575 | Msa1433790:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | - | tig0027431:6063-6082 | None:intergenic | 25.0% |
| TTGATGCTCTTGAAAATCTA+AGG | + | tig0027431:4718-4737 | Msa1433790:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | - | tig0027431:5040-5059 | None:intergenic | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | - | tig0027431:5041-5060 | None:intergenic | 30.0% | |
| ! | TCACAAACTGTTGATAAAAC+TGG | + | tig0027431:5251-5270 | Msa1433790:CDS | 30.0% |
| AACAATAGATTTGTCTATCC+TGG | - | tig0027431:5462-5481 | None:intergenic | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | + | tig0027431:5461-5480 | Msa1433790:CDS | 30.0% | |
| ! | TATTGTTGGAATTCCTGTTT+TGG | + | tig0027431:5475-5494 | Msa1433790:CDS | 30.0% |
| TGAAAAGAAAATGCATTGCA+CGG | + | tig0027431:5724-5743 | Msa1433790:CDS | 30.0% | |
| ATTCGGAAGACCAATAAATT+TGG | - | tig0027431:5858-5877 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | + | tig0027431:5904-5923 | Msa1433790:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | + | tig0027431:5905-5924 | Msa1433790:CDS | 30.0% | |
| ! | TGAAAGTGTATGGAATTATC+TGG | + | tig0027431:5955-5974 | Msa1433790:CDS | 30.0% |
| TTCTAACTATTATCAGCTTC+AGG | + | tig0027431:6012-6031 | Msa1433790:CDS | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | + | tig0027431:6436-6455 | Msa1433790:CDS | 30.0% | |
| TTGATGCTCTTGAAAATCTA+AGG | + | tig0027431:4718-4737 | Msa1433790:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | - | tig0027431:5040-5059 | None:intergenic | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | - | tig0027431:5041-5060 | None:intergenic | 30.0% | |
| ! | TCACAAACTGTTGATAAAAC+TGG | + | tig0027431:5251-5270 | Msa1433790:CDS | 30.0% |
| AACAATAGATTTGTCTATCC+TGG | - | tig0027431:5462-5481 | None:intergenic | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | + | tig0027431:5461-5480 | Msa1433790:CDS | 30.0% | |
| ! | TATTGTTGGAATTCCTGTTT+TGG | + | tig0027431:5475-5494 | Msa1433790:CDS | 30.0% |
| TGAAAAGAAAATGCATTGCA+CGG | + | tig0027431:5724-5743 | Msa1433790:CDS | 30.0% | |
| ATTCGGAAGACCAATAAATT+TGG | - | tig0027431:5858-5877 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | + | tig0027431:5904-5923 | Msa1433790:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | + | tig0027431:5905-5924 | Msa1433790:CDS | 30.0% | |
| ! | TGAAAGTGTATGGAATTATC+TGG | + | tig0027431:5955-5974 | Msa1433790:CDS | 30.0% |
| TTCTAACTATTATCAGCTTC+AGG | + | tig0027431:6012-6031 | Msa1433790:CDS | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | + | tig0027431:6436-6455 | Msa1433790:CDS | 30.0% | |
| ! | ATCAAGTTTGTTTGCCTTTG+TGG | - | tig0027431:4592-4611 | None:intergenic | 35.0% |
| GTTGATCATCAACATCAACA+TGG | - | tig0027431:4638-4657 | None:intergenic | 35.0% | |
| TTGATCTCCAACAACAACAA+TGG | - | tig0027431:4781-4800 | None:intergenic | 35.0% | |
| TGATACCAGCTAATGATTCA+AGG | - | tig0027431:4824-4843 | None:intergenic | 35.0% | |
| TGGACAAGGAATTTGTACAA+GGG | + | tig0027431:4854-4873 | Msa1433790:CDS | 35.0% | |
| !! | AATTTGTACAAGGGTACCTT+TGG | + | tig0027431:4863-4882 | Msa1433790:CDS | 35.0% |
| TTATACTCCAAAACAAGCTC+TGG | - | tig0027431:4921-4940 | None:intergenic | 35.0% | |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | + | tig0027431:4921-4940 | Msa1433790:CDS | 35.0% |
| CAAACAACTTTCAACTGATG+AGG | + | tig0027431:4944-4963 | Msa1433790:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | - | tig0027431:5039-5058 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | - | tig0027431:5074-5093 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | + | tig0027431:5225-5244 | Msa1433790:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | + | tig0027431:5360-5379 | Msa1433790:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | + | tig0027431:5371-5390 | Msa1433790:CDS | 35.0% | |
| TGTTGAAAGTAATGCCACTA+AGG | + | tig0027431:5796-5815 | Msa1433790:CDS | 35.0% | |
| ! | GAACTTTGATTTCCTCCATT+AGG | - | tig0027431:5826-5845 | None:intergenic | 35.0% |
| CTTGAGGAAGCCAAATTTAT+TGG | + | tig0027431:5845-5864 | Msa1433790:CDS | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | - | tig0027431:5906-5925 | None:intergenic | 35.0% |
| CCTTACTTCAGAGAAAAGTT+AGG | + | tig0027431:5903-5922 | Msa1433790:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | - | tig0027431:6273-6292 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | + | tig0027431:6282-6301 | Msa1433790:CDS | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | + | tig0027431:6297-6316 | Msa1433790:CDS | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | - | tig0027431:6323-6342 | None:intergenic | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | + | tig0027431:6332-6351 | Msa1433790:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | - | tig0027431:6354-6373 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | + | tig0027431:6405-6424 | Msa1433790:CDS | 35.0% | |
| TATGGACAGGATTGGAATTA+TGG | + | tig0027431:6570-6589 | Msa1433790:CDS | 35.0% | |
| ATGGACAGGATTGGAATTAT+GGG | + | tig0027431:6571-6590 | Msa1433790:CDS | 35.0% | |
| ! | ATCAAGTTTGTTTGCCTTTG+TGG | - | tig0027431:4592-4611 | None:intergenic | 35.0% |
| GTTGATCATCAACATCAACA+TGG | - | tig0027431:4638-4657 | None:intergenic | 35.0% | |
| TTGATCTCCAACAACAACAA+TGG | - | tig0027431:4781-4800 | None:intergenic | 35.0% | |
| TGATACCAGCTAATGATTCA+AGG | - | tig0027431:4824-4843 | None:intergenic | 35.0% | |
| TGGACAAGGAATTTGTACAA+GGG | + | tig0027431:4854-4873 | Msa1433790:CDS | 35.0% | |
| !! | AATTTGTACAAGGGTACCTT+TGG | + | tig0027431:4863-4882 | Msa1433790:CDS | 35.0% |
| TTATACTCCAAAACAAGCTC+TGG | - | tig0027431:4921-4940 | None:intergenic | 35.0% | |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | + | tig0027431:4921-4940 | Msa1433790:CDS | 35.0% |
| CAAACAACTTTCAACTGATG+AGG | + | tig0027431:4944-4963 | Msa1433790:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | - | tig0027431:5039-5058 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | - | tig0027431:5074-5093 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | + | tig0027431:5225-5244 | Msa1433790:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | + | tig0027431:5360-5379 | Msa1433790:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | + | tig0027431:5371-5390 | Msa1433790:CDS | 35.0% | |
| TGTTGAAAGTAATGCCACTA+AGG | + | tig0027431:5796-5815 | Msa1433790:CDS | 35.0% | |
| ! | GAACTTTGATTTCCTCCATT+AGG | - | tig0027431:5826-5845 | None:intergenic | 35.0% |
| CTTGAGGAAGCCAAATTTAT+TGG | + | tig0027431:5845-5864 | Msa1433790:CDS | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | - | tig0027431:5906-5925 | None:intergenic | 35.0% |
| CCTTACTTCAGAGAAAAGTT+AGG | + | tig0027431:5903-5922 | Msa1433790:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | - | tig0027431:6273-6292 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | + | tig0027431:6282-6301 | Msa1433790:CDS | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | + | tig0027431:6297-6316 | Msa1433790:CDS | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | - | tig0027431:6323-6342 | None:intergenic | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | + | tig0027431:6332-6351 | Msa1433790:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | - | tig0027431:6354-6373 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | + | tig0027431:6405-6424 | Msa1433790:CDS | 35.0% | |
| TATGGACAGGATTGGAATTA+TGG | + | tig0027431:6570-6589 | Msa1433790:CDS | 35.0% | |
| ATGGACAGGATTGGAATTAT+GGG | + | tig0027431:6571-6590 | Msa1433790:CDS | 35.0% | |
| TGGAAACAAGAGTTCCACAA+AGG | + | tig0027431:4575-4594 | Msa1433790:CDS | 40.0% | |
| ACAATTGGTGCAACAGATAG+AGG | - | tig0027431:4666-4685 | None:intergenic | 40.0% | |
| !!! | TTTTCAAGAGCATCAAGCAC+TGG | - | tig0027431:4714-4733 | None:intergenic | 40.0% |
| CGTCTCAACATTGCTAAAGA+GGG | + | tig0027431:4741-4760 | Msa1433790:CDS | 40.0% | |
| ! | CTTCCAACCATTGTTGTTGT+TGG | + | tig0027431:4771-4790 | Msa1433790:CDS | 40.0% |
| TCTCCAACAACAACAATGGT+TGG | - | tig0027431:4777-4796 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCATC+TGG | + | tig0027431:4786-4805 | Msa1433790:CDS | 40.0% | |
| AGTGTCCTTGAATCATTAGC+TGG | + | tig0027431:4816-4835 | Msa1433790:CDS | 40.0% | |
| GTGGACAAGGAATTTGTACA+AGG | + | tig0027431:4853-4872 | Msa1433790:CDS | 40.0% | |
| ! | TTTTGCAGCCTCATAACCAA+AGG | - | tig0027431:4882-4901 | None:intergenic | 40.0% |
| TGGAGTTCCTGATCTTACTA+TGG | + | tig0027431:5064-5083 | Msa1433790:CDS | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | + | tig0027431:5077-5096 | Msa1433790:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | + | tig0027431:5101-5120 | Msa1433790:CDS | 40.0% | |
| !! | TTATCAGGTTGACCATGAAC+AGG | - | tig0027431:5116-5135 | None:intergenic | 40.0% |
| AAGGCTGATAAATCTCCTGA+AGG | + | tig0027431:5299-5318 | Msa1433790:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | + | tig0027431:5307-5326 | Msa1433790:CDS | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | + | tig0027431:5338-5357 | Msa1433790:CDS | 40.0% | |
| ! | GACGATGTTAACATTGGTCT+TGG | + | tig0027431:5344-5363 | Msa1433790:CDS | 40.0% |
| AAGAGTCTTACGAAGATGCA+AGG | + | tig0027431:5396-5415 | Msa1433790:CDS | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | - | tig0027431:5491-5510 | None:intergenic | 40.0% |
| GATTTGCAGAAAAGCAGACA+TGG | - | tig0027431:5639-5658 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | + | tig0027431:5808-5827 | Msa1433790:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | - | tig0027431:5813-5832 | None:intergenic | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | + | tig0027431:5811-5830 | Msa1433790:CDS | 40.0% | |
| GGAGGAAATCAAAGTTCTTG+AGG | + | tig0027431:5829-5848 | Msa1433790:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | - | tig0027431:5875-5894 | None:intergenic | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | - | tig0027431:5887-5906 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | - | tig0027431:6147-6166 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | - | tig0027431:6148-6167 | None:intergenic | 40.0% | |
| ! | TCAAGTACTGTGAAGCTGAA+AGG | + | tig0027431:6226-6245 | Msa1433790:CDS | 40.0% |
| TAAGCCTGATTCAACATGTG+TGG | - | tig0027431:6289-6308 | None:intergenic | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | + | tig0027431:6439-6458 | Msa1433790:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | + | tig0027431:6482-6501 | Msa1433790:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | - | tig0027431:6493-6512 | None:intergenic | 40.0% | |
| TCCAATCCTGTCCATAATGT+TGG | - | tig0027431:6566-6585 | None:intergenic | 40.0% | |
| TGGACAGGATTGGAATTATG+GGG | + | tig0027431:6572-6591 | Msa1433790:CDS | 40.0% | |
| TGGAAACAAGAGTTCCACAA+AGG | + | tig0027431:4575-4594 | Msa1433790:CDS | 40.0% | |
| ACAATTGGTGCAACAGATAG+AGG | - | tig0027431:4666-4685 | None:intergenic | 40.0% | |
| !!! | TTTTCAAGAGCATCAAGCAC+TGG | - | tig0027431:4714-4733 | None:intergenic | 40.0% |
| CGTCTCAACATTGCTAAAGA+GGG | + | tig0027431:4741-4760 | Msa1433790:CDS | 40.0% | |
| ! | CTTCCAACCATTGTTGTTGT+TGG | + | tig0027431:4771-4790 | Msa1433790:CDS | 40.0% |
| TCTCCAACAACAACAATGGT+TGG | - | tig0027431:4777-4796 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCATC+TGG | + | tig0027431:4786-4805 | Msa1433790:CDS | 40.0% | |
| AGTGTCCTTGAATCATTAGC+TGG | + | tig0027431:4816-4835 | Msa1433790:CDS | 40.0% | |
| GTGGACAAGGAATTTGTACA+AGG | + | tig0027431:4853-4872 | Msa1433790:CDS | 40.0% | |
| ! | TTTTGCAGCCTCATAACCAA+AGG | - | tig0027431:4882-4901 | None:intergenic | 40.0% |
| TGGAGTTCCTGATCTTACTA+TGG | + | tig0027431:5064-5083 | Msa1433790:CDS | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | + | tig0027431:5077-5096 | Msa1433790:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | + | tig0027431:5101-5120 | Msa1433790:CDS | 40.0% | |
| !! | TTATCAGGTTGACCATGAAC+AGG | - | tig0027431:5116-5135 | None:intergenic | 40.0% |
| AAGGCTGATAAATCTCCTGA+AGG | + | tig0027431:5299-5318 | Msa1433790:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | + | tig0027431:5307-5326 | Msa1433790:CDS | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | + | tig0027431:5338-5357 | Msa1433790:CDS | 40.0% | |
| ! | GACGATGTTAACATTGGTCT+TGG | + | tig0027431:5344-5363 | Msa1433790:CDS | 40.0% |
| AAGAGTCTTACGAAGATGCA+AGG | + | tig0027431:5396-5415 | Msa1433790:CDS | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | - | tig0027431:5491-5510 | None:intergenic | 40.0% |
| GATTTGCAGAAAAGCAGACA+TGG | - | tig0027431:5639-5658 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | + | tig0027431:5808-5827 | Msa1433790:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | - | tig0027431:5813-5832 | None:intergenic | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | + | tig0027431:5811-5830 | Msa1433790:CDS | 40.0% | |
| GGAGGAAATCAAAGTTCTTG+AGG | + | tig0027431:5829-5848 | Msa1433790:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | - | tig0027431:5875-5894 | None:intergenic | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | - | tig0027431:5887-5906 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | - | tig0027431:6147-6166 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | - | tig0027431:6148-6167 | None:intergenic | 40.0% | |
| ! | TCAAGTACTGTGAAGCTGAA+AGG | + | tig0027431:6226-6245 | Msa1433790:CDS | 40.0% |
| TAAGCCTGATTCAACATGTG+TGG | - | tig0027431:6289-6308 | None:intergenic | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | + | tig0027431:6439-6458 | Msa1433790:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | + | tig0027431:6482-6501 | Msa1433790:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | - | tig0027431:6493-6512 | None:intergenic | 40.0% | |
| TCCAATCCTGTCCATAATGT+TGG | - | tig0027431:6566-6585 | None:intergenic | 40.0% | |
| TGGACAGGATTGGAATTATG+GGG | + | tig0027431:6572-6591 | Msa1433790:CDS | 40.0% | |
| GCGTCTCAACATTGCTAAAG+AGG | + | tig0027431:4740-4759 | Msa1433790:CDS | 45.0% | |
| GTACAAATTCCTTGTCCACG+TGG | - | tig0027431:4852-4871 | None:intergenic | 45.0% | |
| !! | CAAGGGTACCTTTGGTTATG+AGG | + | tig0027431:4871-4890 | Msa1433790:CDS | 45.0% |
| TATCAAAGTCAGTGGGGTGT+TGG | - | tig0027431:5033-5052 | None:intergenic | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | - | tig0027431:5098-5117 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | + | tig0027431:5607-5626 | Msa1433790:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | - | tig0027431:5611-5630 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | - | tig0027431:6089-6108 | None:intergenic | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | + | tig0027431:6096-6115 | Msa1433790:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | + | tig0027431:6135-6154 | Msa1433790:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | + | tig0027431:6138-6157 | Msa1433790:CDS | 45.0% | |
| ! | GGAGGAGTATAACAAGCTGA+TGG | + | tig0027431:6156-6175 | Msa1433790:CDS | 45.0% |
| ! | ACTGTGAAGCTGAAAGGTGT+TGG | + | tig0027431:6232-6251 | Msa1433790:CDS | 45.0% |
| AGGCCAGATTGACAGCTTAT+TGG | + | tig0027431:6317-6336 | Msa1433790:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | + | tig0027431:6335-6354 | Msa1433790:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | + | tig0027431:6442-6461 | Msa1433790:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | + | tig0027431:6481-6500 | Msa1433790:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | + | tig0027431:6540-6559 | Msa1433790:CDS | 45.0% | |
| GCCAACATTATGGACAGGAT+TGG | + | tig0027431:6562-6581 | Msa1433790:CDS | 45.0% | |
| GCGTCTCAACATTGCTAAAG+AGG | + | tig0027431:4740-4759 | Msa1433790:CDS | 45.0% | |
| GTACAAATTCCTTGTCCACG+TGG | - | tig0027431:4852-4871 | None:intergenic | 45.0% | |
| !! | CAAGGGTACCTTTGGTTATG+AGG | + | tig0027431:4871-4890 | Msa1433790:CDS | 45.0% |
| TATCAAAGTCAGTGGGGTGT+TGG | - | tig0027431:5033-5052 | None:intergenic | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | - | tig0027431:5098-5117 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | + | tig0027431:5607-5626 | Msa1433790:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | - | tig0027431:5611-5630 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | - | tig0027431:6089-6108 | None:intergenic | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | + | tig0027431:6096-6115 | Msa1433790:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | + | tig0027431:6135-6154 | Msa1433790:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | + | tig0027431:6138-6157 | Msa1433790:CDS | 45.0% | |
| ! | GGAGGAGTATAACAAGCTGA+TGG | + | tig0027431:6156-6175 | Msa1433790:CDS | 45.0% |
| ! | ACTGTGAAGCTGAAAGGTGT+TGG | + | tig0027431:6232-6251 | Msa1433790:CDS | 45.0% |
| AGGCCAGATTGACAGCTTAT+TGG | + | tig0027431:6317-6336 | Msa1433790:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | + | tig0027431:6335-6354 | Msa1433790:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | + | tig0027431:6442-6461 | Msa1433790:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | + | tig0027431:6481-6500 | Msa1433790:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | + | tig0027431:6540-6559 | Msa1433790:CDS | 45.0% | |
| GCCAACATTATGGACAGGAT+TGG | + | tig0027431:6562-6581 | Msa1433790:CDS | 45.0% | |
| GGTGCAACAGATAGAGGTTG+AGG | - | tig0027431:4660-4679 | None:intergenic | 50.0% | |
| GCTCTGGCTGTGGAAGTAAA+TGG | - | tig0027431:4905-4924 | None:intergenic | 50.0% | |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | + | tig0027431:4911-4930 | Msa1433790:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | - | tig0027431:4915-4934 | None:intergenic | 50.0% |
| TGCTATAAACGCAGCCACTG+AGG | + | tig0027431:4980-4999 | Msa1433790:CDS | 50.0% | |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | - | tig0027431:5021-5040 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | + | tig0027431:5280-5299 | Msa1433790:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | + | tig0027431:5313-5332 | Msa1433790:CDS | 50.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | - | tig0027431:5317-5336 | None:intergenic | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | + | tig0027431:5441-5460 | Msa1433790:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | + | tig0027431:5577-5596 | Msa1433790:CDS | 50.0% |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | + | tig0027431:6452-6471 | Msa1433790:CDS | 50.0% |
| GGAAGAGACAGAAGTTGAGC+AGG | + | tig0027431:6503-6522 | Msa1433790:CDS | 50.0% | |
| AGAGACCGTGGCCAACATTA+TGG | + | tig0027431:6552-6571 | Msa1433790:CDS | 50.0% | |
| CCTGTCCATAATGTTGGCCA+CGG | - | tig0027431:6560-6579 | None:intergenic | 50.0% | |
| GGTGCAACAGATAGAGGTTG+AGG | - | tig0027431:4660-4679 | None:intergenic | 50.0% | |
| GCTCTGGCTGTGGAAGTAAA+TGG | - | tig0027431:4905-4924 | None:intergenic | 50.0% | |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | + | tig0027431:4911-4930 | Msa1433790:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | - | tig0027431:4915-4934 | None:intergenic | 50.0% |
| TGCTATAAACGCAGCCACTG+AGG | + | tig0027431:4980-4999 | Msa1433790:CDS | 50.0% | |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | - | tig0027431:5021-5040 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | + | tig0027431:5280-5299 | Msa1433790:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | + | tig0027431:5313-5332 | Msa1433790:CDS | 50.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | - | tig0027431:5317-5336 | None:intergenic | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | + | tig0027431:5441-5460 | Msa1433790:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | + | tig0027431:5577-5596 | Msa1433790:CDS | 50.0% |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | + | tig0027431:6452-6471 | Msa1433790:CDS | 50.0% |
| GGAAGAGACAGAAGTTGAGC+AGG | + | tig0027431:6503-6522 | Msa1433790:CDS | 50.0% | |
| AGAGACCGTGGCCAACATTA+TGG | + | tig0027431:6552-6571 | Msa1433790:CDS | 50.0% | |
| CCTGTCCATAATGTTGGCCA+CGG | - | tig0027431:6560-6579 | None:intergenic | 50.0% | |
| ATCAGCTTGCCACGTGGACA+AGG | + | tig0027431:4840-4859 | Msa1433790:CDS | 55.0% | |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | + | tig0027431:5003-5022 | Msa1433790:CDS | 55.0% |
| AGACATGGCATCAGCCAGTG+AGG | - | tig0027431:5624-5643 | None:intergenic | 55.0% | |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | + | tig0027431:6462-6481 | Msa1433790:CDS | 55.0% |
| CCGTGGCCAACATTATGGAC+AGG | + | tig0027431:6557-6576 | Msa1433790:CDS | 55.0% | |
| ATCAGCTTGCCACGTGGACA+AGG | + | tig0027431:4840-4859 | Msa1433790:CDS | 55.0% | |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | + | tig0027431:5003-5022 | Msa1433790:CDS | 55.0% |
| AGACATGGCATCAGCCAGTG+AGG | - | tig0027431:5624-5643 | None:intergenic | 55.0% | |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | + | tig0027431:6462-6481 | Msa1433790:CDS | 55.0% |
| CCGTGGCCAACATTATGGAC+AGG | + | tig0027431:6557-6576 | Msa1433790:CDS | 55.0% | |
| GCTGGTATCAGCTTGCCACG+TGG | + | tig0027431:4834-4853 | Msa1433790:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | - | tig0027431:4997-5016 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | + | tig0027431:5002-5021 | Msa1433790:CDS | 60.0% |
| GCTGGTATCAGCTTGCCACG+TGG | + | tig0027431:4834-4853 | Msa1433790:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | - | tig0027431:4997-5016 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | + | tig0027431:5002-5021 | Msa1433790:CDS | 60.0% |
| GCAGCCACTGAGGAGCTTGC+TGG | + | tig0027431:4990-5009 | Msa1433790:CDS | 65.0% | |
| GCAGCCACTGAGGAGCTTGC+TGG | + | tig0027431:4990-5009 | Msa1433790:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027431 | gene | 4567 | 6615 | 4567 | ID=Msa1433790;Name=Msa1433790 |
| tig0027431 | mRNA | 4567 | 6615 | 4567 | ID=Msa1433790-mRNA-1;Parent=Msa1433790;Name=Msa1433790-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|682 |
| tig0027431 | exon | 4567 | 6615 | 4567 | ID=Msa1433790-mRNA-1:exon:8857;Parent=Msa1433790-mRNA-1 |
| tig0027431 | CDS | 4567 | 6615 | 4567 | ID=Msa1433790-mRNA-1:cds;Parent=Msa1433790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
