AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565660 MtrunA17_Chr8g0379961 87.746 661 19 8 1 600 1 660 0.0 1123
Msa0565660 MtrunA17_Chr8g0379961 92.808 292 19 2 601 891 6 296 0.0 544
Msa0565660 MtrunA17_Chr8g0379941 75.152 660 95 11 6 600 11 666 0.0 952
Msa0565660 MtrunA17_Chr8g0379941 87.671 292 34 2 600 891 10 299 2.31e-171 513
Msa0565660 MtrunA17_Chr8g0379951 67.742 124 27 1 405 515 1 124 9.38e-50 171
Msa0565660 MtrunA17_Chr4g0049731 40.562 249 128 7 660 894 35 277 4.87e-35 143
Msa0565660 MtrunA17_Chr4g0049731 34.579 321 172 13 67 352 35 352 2.62e-29 125
Msa0565660 MtrunA17_Chr2g0279671 38.554 249 141 6 656 894 40 286 2.11e-33 138
Msa0565660 MtrunA17_Chr2g0279671 33.758 314 172 10 63 342 40 351 9.02e-29 124
Msa0565660 MtrunA17_Chr5g0396561 42.781 187 104 3 662 846 35 220 1.30e-30 128
Msa0565660 MtrunA17_Chr5g0396561 40.588 170 95 4 69 232 35 204 1.85e-23 106
Msa0565660 MtrunA17_Chr8g0391891 40.860 186 108 2 662 846 35 219 1.53e-29 125
Msa0565660 MtrunA17_Chr8g0391891 37.870 169 100 3 69 232 35 203 5.05e-22 101
Msa0565660 MtrunA17_Chr8g0388271 42.408 191 99 4 662 846 34 219 2.38e-29 124
Msa0565660 MtrunA17_Chr8g0388271 40.230 174 90 5 69 232 34 203 1.77e-22 103
Msa0565660 MtrunA17_Chr7g0233071 40.686 204 112 5 662 862 40 237 5.25e-29 123
Msa0565660 MtrunA17_Chr7g0233071 38.824 170 98 4 69 232 40 209 3.21e-22 102
Msa0565660 MtrunA17_Chr8g0337041 40.976 205 110 6 662 862 40 237 1.36e-28 122
Msa0565660 MtrunA17_Chr8g0337041 38.596 171 97 5 69 232 40 209 1.74e-21 100
Msa0565660 MtrunA17_Chr4g0055051 38.017 242 122 8 662 885 34 265 4.03e-28 120
Msa0565660 MtrunA17_Chr4g0055051 38.372 172 96 5 69 232 34 203 1.82e-21 99.8
Msa0565660 MtrunA17_Chr8g0346971 36.530 219 126 4 662 868 34 251 7.18e-27 117
Msa0565660 MtrunA17_Chr8g0346971 37.778 180 94 6 69 232 34 211 7.65e-20 94.7
Msa0565660 MtrunA17_Chr8g0360401 30.736 231 142 7 647 863 27 253 5.24e-17 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565660 AT1G60500.1 51.282 663 254 11 3 600 2 660 0.0 647
Msa0565660 AT1G60500.1 71.280 289 78 3 606 891 7 293 9.15e-131 408
Msa0565660 AT1G60530.1 75.191 262 64 1 630 891 30 290 8.61e-134 402
Msa0565660 AT1G60530.1 66.207 290 70 4 18 287 19 300 3.79e-120 367
Msa0565660 AT4G33650.2 34.483 290 151 7 629 894 30 304 8.99e-33 137
Msa0565660 AT4G33650.2 29.944 354 185 11 37 342 31 369 7.06e-27 118
Msa0565660 AT4G33650.1 34.483 290 151 7 629 894 30 304 1.14e-32 136
Msa0565660 AT4G33650.1 29.944 354 185 11 37 342 31 369 8.90e-27 117
Msa0565660 AT2G14120.4 34.629 283 167 7 618 885 1 280 8.96e-32 133
Msa0565660 AT2G14120.4 29.706 340 191 11 25 322 1 334 1.93e-26 116
Msa0565660 AT2G14120.2 34.629 283 167 7 618 885 1 280 1.14e-31 133
Msa0565660 AT2G14120.2 29.706 340 191 11 25 322 1 334 2.16e-26 116
Msa0565660 AT2G14120.1 34.629 283 167 7 618 885 1 280 1.29e-31 133
Msa0565660 AT2G14120.1 29.706 340 191 11 25 322 1 334 2.40e-26 116
Msa0565660 AT2G14120.3 34.629 283 167 7 618 885 1 280 1.49e-31 133
Msa0565660 AT2G14120.3 29.706 340 191 11 25 322 1 334 2.78e-26 116
Msa0565660 AT1G14830.1 41.758 182 103 3 662 841 35 215 6.02e-30 127
Msa0565660 AT1G14830.1 39.412 170 97 4 69 232 35 204 2.45e-23 106
Msa0565660 AT5G42080.2 39.810 211 122 4 662 868 34 243 8.69e-30 124
Msa0565660 AT5G42080.2 40.000 170 96 4 69 232 34 203 2.58e-22 101
Msa0565660 AT5G42080.4 39.810 211 122 4 662 868 34 243 2.53e-29 125
Msa0565660 AT5G42080.4 40.000 170 96 4 69 232 34 203 4.52e-22 102
Msa0565660 AT5G42080.1 39.810 211 122 4 662 868 34 243 2.53e-29 125
Msa0565660 AT5G42080.1 40.000 170 96 4 69 232 34 203 4.52e-22 102
Msa0565660 AT5G42080.3 39.810 211 122 4 662 868 34 243 3.12e-29 124
Msa0565660 AT5G42080.3 38.764 178 87 5 69 232 34 203 4.90e-22 102
Msa0565660 AT3G60190.1 39.623 212 121 5 662 868 40 249 1.05e-28 123
Msa0565660 AT3G60190.1 40.351 171 94 5 69 232 40 209 5.18e-22 102
Msa0565660 AT3G61760.3 41.463 205 109 6 662 862 34 231 1.34e-28 120
Msa0565660 AT3G61760.3 40.116 172 93 6 69 232 34 203 3.03e-21 98.6
Msa0565660 AT3G61760.1 41.463 205 109 6 662 862 34 231 1.81e-28 122
Msa0565660 AT3G61760.1 40.116 172 93 6 69 232 34 203 2.94e-21 99.8
Msa0565660 AT3G61760.2 41.463 205 109 6 662 862 34 231 2.51e-28 121
Msa0565660 AT3G61760.2 40.116 172 93 6 69 232 34 203 4.37e-21 99.0
Msa0565660 AT2G44590.3 35.169 236 139 6 662 886 35 267 1.68e-27 119
Msa0565660 AT2G44590.3 37.209 172 98 5 69 232 35 204 1.19e-20 97.8
Msa0565660 AT2G44590.2 31.356 236 131 7 662 886 35 250 3.44e-18 89.7
Msa0565660 AT2G44590.1 31.356 236 131 7 662 886 35 250 3.54e-18 89.7
Msa0565660 AT1G53140.1 27.536 276 172 10 600 863 10 269 8.33e-15 79.3

Find 175 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACGCGCTTGAAAATTTA+AGG 0.123395 4_1:+66545065 Msa0565660:CDS
GAGGAGTCTCCATCTATTTC+TGG 0.166668 4_1:+66540264 Msa0565660:CDS
GCAGTTCTTGGCATGAAATT+TGG 0.208693 4_1:-66539664 None:intergenic
TTCATTGTATGAAGATATAA+TGG 0.211656 4_1:-66545026 None:intergenic
TTAGTACTTGTGAGTCTATT+AGG 0.242558 4_1:+66539017 Msa0565660:CDS
ATCAAGTTTGTTTGCCTTTG+TGG 0.244719 4_1:-66538381 None:intergenic
CTTGAGGAAGCTAAGTTAAT+TGG 0.255531 4_1:+66539637 Msa0565660:CDS
TTCCCTCTTTCGCAATATTC+AGG 0.283769 4_1:-66545090 None:intergenic
TGACAATGTGTGGAGCTATT+TGG 0.298324 4_1:+66539747 Msa0565660:CDS
TCTGAGAAAGATTCTTCTAA+TGG 0.298751 4_1:+66539471 Msa0565660:CDS
AATGTTAGAAAAGCAGTTCT+TGG 0.299019 4_1:-66539676 None:intergenic
ATCTGATCATAAATGTTATC+AGG 0.304162 4_1:-66538920 None:intergenic
ATCTGATCATAAATGTTATC+AGG 0.304162 4_1:-66545475 None:intergenic
CCTTCAAGCTTCACAGTACT+TGG 0.311673 4_1:-66540018 None:intergenic
TAACATTTATGATCAGATTA+AGG 0.317964 4_1:+66538925 Msa0565660:CDS
TAACATTTATGATCAGATTA+AGG 0.317964 4_1:+66545480 Msa0565660:CDS
CTTCCAACCATTGTTGTTGT+TGG 0.322456 4_1:+66538563 Msa0565660:CDS
TGATGATGTTAACATTGGTT+TGG 0.323376 4_1:+66539135 Msa0565660:CDS
AGTGTCACACACTCCTGTTT+TGG 0.326311 4_1:+66545791 Msa0565660:CDS
TCCACAGCCAGAGCTTGTTT+TGG 0.333742 4_1:+66545258 Msa0565660:CDS
GCCTGCCAATTTGACTTCAT+TGG 0.333846 4_1:+66539399 Msa0565660:CDS
TCACAAACTGTTGATAAAAC+TGG 0.334047 4_1:+66545601 Msa0565660:CDS
TCCACAGCCAGAGCTTGTTT+TGG 0.338480 4_1:+66538703 Msa0565660:CDS
CTTACTATGGTTGATCTTCC+AGG 0.352429 4_1:+66545424 Msa0565660:CDS
ATCTGCCAATGAAGTCAAAT+TGG 0.360580 4_1:-66539404 None:intergenic
CAAGGGTACCTTTGGTTATG+AGG 0.366182 4_1:+66538663 Msa0565660:CDS
CAATGCATTTGTTTATCATC+AGG 0.370755 4_1:-66539511 None:intergenic
CTTCCCACCATTGTTGTTGT+TGG 0.371021 4_1:+66545118 Msa0565660:CDS
CCAAGTACTGTGAAGCTTGA+AGG 0.373747 4_1:+66540018 Msa0565660:CDS
TGGAGTTCCTGATCTTACTA+TGG 0.379945 4_1:+66545411 Msa0565660:CDS
CTTACAATGGTTGATCTTCC+AGG 0.382214 4_1:+66538869 Msa0565660:CDS
GCAGCCACTGAGGAGCTTGC+TGG 0.382789 4_1:+66538782 Msa0565660:CDS
TAAATCTCCTGAAGGTTTGC+TGG 0.387244 4_1:+66545657 Msa0565660:CDS
CTGAGAAAGATTCTTCTAAT+GGG 0.390787 4_1:+66539472 Msa0565660:CDS
GATGATGTTAACATTGGTTT+GGG 0.391771 4_1:+66539136 Msa0565660:CDS
TTCAAAATAATACTCTCTTC+AGG 0.392099 4_1:-66545526 None:intergenic
GCTCTGGCTGTGGAAGTAAA+TGG 0.394731 4_1:-66538694 None:intergenic
TTACTACTTGTGAGTCGATA+AGG 0.395079 4_1:+66545572 Msa0565660:CDS
ATAACTCGTGTTCCTGTTCA+TGG 0.396246 4_1:+66545448 Msa0565660:CDS
TTGATCTTCTTAATTATCTC+AGG 0.396848 4_1:-66539337 None:intergenic
TCACAGATAGTTGATAAAAC+TGG 0.398319 4_1:+66539043 Msa0565660:CDS
AGGCAAGATTAATTGCCTAT+TGG 0.399341 4_1:+66540112 Msa0565660:CDS
ACCTTCTCCAGCAAACCTTC+AGG 0.399453 4_1:-66545664 None:intergenic
AAGATTGACAAATCCATTGT+TGG 0.402415 4_1:+66539253 Msa0565660:CDS
TTGAGGATAATGCTCTCTTC+AGG 0.409426 4_1:-66538971 None:intergenic
GAATCAGGCCTTTGACTTGA+AGG 0.413968 4_1:+66540092 Msa0565660:intron
GACGATGTTAACATTGGTCT+TGG 0.414913 4_1:+66545694 Msa0565660:CDS
TTGATGCTCTTGAAAATCTA+AGG 0.416842 4_1:+66538510 Msa0565660:CDS
TTGCAATCCGGAGTACTTGC+AGG 0.423704 4_1:+66539930 Msa0565660:CDS
AATTTGTACAAGGGTACCTT+TGG 0.424069 4_1:+66538655 Msa0565660:CDS
CAAGGGTACCATTGGTTATG+AGG 0.425077 4_1:+66545218 Msa0565660:CDS
TGTCTCTTACCAGAAATAGA+TGG 0.425419 4_1:-66540273 None:intergenic
ACAGCCACTGAGGAGCTTGC+TGG 0.430442 4_1:+66545337 Msa0565660:CDS
GGACTACGATCTCTTCCATT+AGG 0.434291 4_1:-66539615 None:intergenic
GTCTTGGTTATGTTTGTGTA+AGG 0.435750 4_1:+66545710 Msa0565660:CDS
TGTGATGCAAGCTGTTGATA+TGG 0.436114 4_1:+66539888 Msa0565660:CDS
TAAATCACCTGAAGGTTTGT+TGG 0.440077 4_1:+66539099 Msa0565660:intron
TTTGGAAAGGGTTGTTATCT+CGG 0.442091 4_1:+66539765 Msa0565660:CDS
CCTCAGCACAATCTTCCAAT+AGG 0.443004 4_1:-66540127 None:intergenic
TGGGGTGTTGGAAATCCCTT+TGG 0.443439 4_1:-66538810 None:intergenic
TGGGGTGTTGGAAATCCCTT+TGG 0.443439 4_1:-66545365 None:intergenic
TTCTACAAAGGATTTCCTAA+TGG 0.446044 4_1:+66539600 Msa0565660:CDS
TCATTGTATGAAGATATAAT+GGG 0.452825 4_1:-66545025 None:intergenic
ACATTGTCAACAAAATTAGT+TGG 0.454264 4_1:-66539733 None:intergenic
TCATTATAAGAAGATACAAT+TGG 0.458646 4_1:-66538470 None:intergenic
ACAAGCTCTGGCTGTGGAAG+TGG 0.459279 4_1:-66545253 None:intergenic
CAACAACAATGGTGGGAAGT+TGG 0.467309 4_1:-66545114 None:intergenic
TTCATTTCTAGCTTCTTCAT+AGG 0.469616 4_1:-66539194 None:intergenic
TCTTTACTATCAAAGTCAGT+GGG 0.470875 4_1:-66545384 None:intergenic
TGATACCAGCTAATGATTCA+AGG 0.474056 4_1:-66538613 None:intergenic
GAGCTTGCTGGCACTGCCAA+AGG 0.478600 4_1:+66538794 Msa0565660:CDS
GAGCTTGCTGGCACTGCCAA+AGG 0.478600 4_1:+66545349 Msa0565660:CDS
GTACCCTTGTGCAAATTCCT+TGG 0.484075 4_1:-66545204 None:intergenic
TCCTGAAGGTTTGCTGGAGA+AGG 0.484851 4_1:+66545663 Msa0565660:CDS
GTTGTTGGAGATCAATCATC+TGG 0.485196 4_1:+66538578 Msa0565660:CDS
TTGTACTCCAAAACAAGCTC+TGG 0.490032 4_1:-66538710 None:intergenic
TTATACTCCAAAACAAGCTC+TGG 0.492061 4_1:-66545265 None:intergenic
TATCAAAGTCAGTGGGGTGT+TGG 0.492352 4_1:-66545377 None:intergenic
AATCAAAGTCAGTGGGGTGT+TGG 0.493013 4_1:-66538822 None:intergenic
TTATCAGGTTGACCATGAAC+AGG 0.495576 4_1:-66545460 None:intergenic
GCGTCTCAACATTGCTAAAG+AGG 0.501157 4_1:+66538532 Msa0565660:CDS
AGCTTGCATCACATGTTGAA+TGG 0.501675 4_1:-66539878 None:intergenic
GCCAATGAAGTCAAATTGGC+AGG 0.504122 4_1:-66539400 None:intergenic
GTTGTTGGTGATCAATCGTC+TGG 0.509934 4_1:+66545133 Msa0565660:CDS
CACGGATTACACTTGCAATC+CGG 0.511102 4_1:+66539918 Msa0565660:CDS
ACAATTGGTGCAATAGATAG+AGG 0.511162 4_1:-66538455 None:intergenic
TTTGTGTGAGAAATCGCATC+GGG 0.512431 4_1:+66539164 Msa0565660:CDS
CGCCTGAATATTGCGAAAGA+GGG 0.512527 4_1:+66545088 Msa0565660:CDS
GTTTGTGTAAGGAATCGAAT+TGG 0.512590 4_1:+66545721 Msa0565660:CDS
CTGGAAGATCAACCATTGTA+AGG 0.513573 4_1:-66538868 None:intergenic
GCGCCTGAATATTGCGAAAG+AGG 0.513959 4_1:+66545087 Msa0565660:CDS
ATAACTCGTGTTCCTGTACA+TGG 0.514492 4_1:+66538893 Msa0565660:CDS
GTAAGAGACAAAGTTTAAGC+AGG 0.516534 4_1:+66540286 Msa0565660:CDS
GGTGCAATAGATAGAGGTTG+AGG 0.516825 4_1:-66538449 None:intergenic
AATGCATTTGTTTATCATCA+GGG 0.517273 4_1:-66539510 None:intergenic
AGATCAACCATAGTAAGATC+AGG 0.522883 4_1:-66545418 None:intergenic
AGTGTCCTTGAATCATTAGC+TGG 0.523168 4_1:+66538608 Msa0565660:intron
TCCAAAACAAGCTCTGGCTG+TGG 0.524796 4_1:-66538704 None:intergenic
TCCAAAACAAGCTCTGGCTG+TGG 0.524796 4_1:-66545259 None:intergenic
AATTTGCACAAGGGTACCAT+TGG 0.526869 4_1:+66545210 Msa0565660:CDS
AGTGTCCTTGAGTCATTAGC+TGG 0.527637 4_1:+66545163 Msa0565660:CDS
AGATCAACCATTGTAAGGTC+AGG 0.531215 4_1:-66538863 None:intergenic
TAATCTTGCCTTCAAGTCAA+AGG 0.534214 4_1:-66540100 None:intergenic
AAGGAGATTTGTAATGAACT+TGG 0.538785 4_1:+66540219 Msa0565660:CDS
ACTTTGATTGTGAAGAAGAA+TGG 0.539337 4_1:+66538836 Msa0565660:intron
ATCAGCTTGCCACGTGGACA+AGG 0.540401 4_1:+66538632 Msa0565660:CDS
ATAAGTTTGCCACGTGGCCA+AGG 0.541062 4_1:+66545187 Msa0565660:CDS
TCAGATTAAGGATATTATCA+TGG 0.543580 4_1:+66538937 Msa0565660:CDS
TCAGATTAAGGATATTATCA+TGG 0.543580 4_1:+66545492 Msa0565660:CDS
TTATATTCCTGCAAGTACTC+CGG 0.543933 4_1:-66539937 None:intergenic
AGCTTGCTGGCACTGCCAAA+GGG 0.547647 4_1:+66538795 Msa0565660:CDS
AGCTTGCTGGCACTGCCAAA+GGG 0.547647 4_1:+66545350 Msa0565660:CDS
TCTTCACAATCAAAGTCAGT+GGG 0.547834 4_1:-66538829 None:intergenic
ATGTGTGGAGCTATTTGGAA+AGG 0.549884 4_1:+66539752 Msa0565660:CDS
AACAAATGCATTGTACTGCT+CGG 0.550416 4_1:+66539521 Msa0565660:CDS
TCTCCAACAACAACAATGGT+TGG 0.551269 4_1:-66538566 None:intergenic
GAGATTTGTAATGAACTTGG+TGG 0.560761 4_1:+66540222 Msa0565660:CDS
TTCTTCACAATCAAAGTCAG+TGG 0.568996 4_1:-66538830 None:intergenic
ACTTTGATAGTAAAGAAGAA+TGG 0.569006 4_1:+66545391 Msa0565660:CDS
ATCACCAACAACAACAATGG+TGG 0.572674 4_1:-66545122 None:intergenic
ATTACTTCAGAGAAAAGTGA+AGG 0.577066 4_1:+66539696 Msa0565660:CDS
TTATCAGGTTGACCATGTAC+AGG 0.577742 4_1:-66538905 None:intergenic
AGTGCCAGCAAGCTCCTCAG+TGG 0.578957 4_1:-66538786 None:intergenic
AGTGCCAGCAAGCTCCTCAG+TGG 0.578957 4_1:-66545341 None:intergenic
TTCTTTACTATCAAAGTCAG+TGG 0.579933 4_1:-66545385 None:intergenic
CGTCTCAACATTGCTAAAGA+GGG 0.585949 4_1:+66538533 Msa0565660:CDS
GTGGACAAGGAATTTGTACA+AGG 0.592993 4_1:+66538645 Msa0565660:CDS
CAGTGTTGAGAGGCTGCTTG+AGG 0.594487 4_1:+66540245 Msa0565660:CDS
CAAACAAGTTTCAACTGATG+AGG 0.595191 4_1:+66538736 Msa0565660:CDS
GGAAGAGATCGTAGTCCTTG+AGG 0.596070 4_1:+66539621 Msa0565660:CDS
ATTGGAAGATTGTGCTGAGG+AGG 0.597029 4_1:+66540130 Msa0565660:CDS
CAAGCTCTGGCTGTGGAAGT+GGG 0.598587 4_1:-66545252 None:intergenic
AAGGCTGATAAATCTCCTGA+AGG 0.599516 4_1:+66545649 Msa0565660:CDS
TTATACCAGCTAATGACTCA+AGG 0.606048 4_1:-66545168 None:intergenic
GGTGCAACAGTGAGAGATTG+AGG 0.610927 4_1:-66545004 None:intergenic
AACGCTTGCTGTCGTGACAA+AGG 0.611997 4_1:+66545630 Msa0565660:CDS
CAAGCAAGTTTCAACTGATG+AGG 0.612510 4_1:+66545291 Msa0565660:CDS
GGTTGCTACTCGTAGAGCTG+TGG 0.612719 4_1:+66539825 Msa0565660:intron
ACAGGAACACGAGTTATACC+TGG 0.615115 4_1:-66545442 None:intergenic
TGTGTGGAGCTATTTGGAAA+GGG 0.616400 4_1:+66539753 Msa0565660:CDS
CAATTAACTTAGCTTCCTCA+AGG 0.618556 4_1:-66539636 None:intergenic
ACAGGAACACGAGTTATACC+TGG 0.620303 4_1:-66538887 None:intergenic
CAAAACAGGAATACCAACAA+TGG 0.623000 4_1:-66539266 None:intergenic
TCACCAACAACAACAATGGT+GGG 0.623546 4_1:-66545121 None:intergenic
TGCTATAAACGCAGCCACTG+AGG 0.623567 4_1:+66538772 Msa0565660:CDS
ACAGCTGACGATGTTAACAT+TGG 0.623909 4_1:+66545688 Msa0565660:CDS
AAGAGTCTTACGAAGATGCA+AGG 0.624326 4_1:+66545746 Msa0565660:CDS
GATTAACAATGATCTGCAGA+AGG 0.625104 4_1:+66540200 Msa0565660:CDS
ACTGCTGATGATGTTAACAT+TGG 0.625783 4_1:+66539130 Msa0565660:CDS
GTGCAAATTCCTTGGCCACG+TGG 0.626948 4_1:-66545196 None:intergenic
TGCTGAAAGTGATTCTACAA+AGG 0.631584 4_1:+66539588 Msa0565660:CDS
TTGATCACCAACAACAACAA+TGG 0.636905 4_1:-66545125 None:intergenic
TTGATCTCCAACAACAACAA+TGG 0.648908 4_1:-66538570 None:intergenic
GTTTGTGTGAGAAATCGCAT+CGG 0.654079 4_1:+66539163 Msa0565660:CDS
GTGGCCAAGGAATTTGCACA+AGG 0.658068 4_1:+66545200 Msa0565660:CDS
TGCTATAAACACAGCCACTG+AGG 0.658388 4_1:+66545327 Msa0565660:CDS
GTACAAATTCCTTGTCCACG+TGG 0.660130 4_1:-66538641 None:intergenic
TTACTTCAGAGAAAAGTGAA+GGG 0.662697 4_1:+66539697 Msa0565660:CDS
GCTCTGGCTGTGGAAGTGGG+TGG 0.664117 4_1:-66545249 None:intergenic
TGTTGATATGGAGAAGCACA+CGG 0.665028 4_1:+66539900 Msa0565660:CDS
AACTTGGTGGCAGTGTTGAG+AGG 0.665158 4_1:+66540235 Msa0565660:CDS
ATTGAGGTTGATCATCAACA+TGG 0.669311 4_1:-66544988 None:intergenic
CAGTAGCAGAAAGAACATTG+AGG 0.676780 4_1:-66538988 None:intergenic
TGGTGTTCCTGACCTTACAA+TGG 0.692132 4_1:+66538856 Msa0565660:CDS
TGTGAGAAATCGCATCGGGG+AGG 0.693174 4_1:+66539168 Msa0565660:CDS
CTTTACTATCAAAGTCAGTG+GGG 0.697240 4_1:-66545383 None:intergenic
GCTGGTATCAGCTTGCCACG+TGG 0.699523 4_1:+66538626 Msa0565660:CDS
GTTGATCATCAACATCAACA+TGG 0.706155 4_1:-66538427 None:intergenic
TGGAAACAAGAGTTCCACAA+AGG 0.707464 4_1:+66538367 Msa0565660:CDS
CCTATTGGAAGATTGTGCTG+AGG 0.716472 4_1:+66540127 Msa0565660:CDS
TGGACAAGGAATTTGTACAA+GGG 0.728664 4_1:+66538646 Msa0565660:CDS
TGGCCAAGGAATTTGCACAA+GGG 0.744756 4_1:+66545201 Msa0565660:CDS
CTTCACAATCAAAGTCAGTG+GGG 0.747498 4_1:-66538828 None:intergenic
GCTGGTATAAGTTTGCCACG+TGG 0.749894 4_1:+66545181 Msa0565660:CDS
TTGTGTGAGAAATCGCATCG+GGG 0.772448 4_1:+66539165 Msa0565660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTAATTAATTTTTTC+CGG - chr4_1:66541767-66541786 None:intergenic 10.0%
!! AAAAAATTAATTAAAAATCC+TGG + chr4_1:66541768-66541787 Msa0565660:intron 10.0%
!! TAAATTATGTCAAAAAAATT+TGG + chr4_1:66542174-66542193 Msa0565660:intron 10.0%
!! CTAATTAAAATTATTAACTT+GGG - chr4_1:66543366-66543385 None:intergenic 10.0%
!!! CAAGTTAATAATTTTAATTA+GGG + chr4_1:66543365-66543384 Msa0565660:intron 10.0%
!!! AAGTTAATAATTTTAATTAG+GGG + chr4_1:66543366-66543385 Msa0565660:intron 10.0%
!!! AGGTTTTTTTTTTTTTTTTT+AGG - chr4_1:66544047-66544066 None:intergenic 10.0%
!! AGTTTAATTAACTTAATGTA+TGG + chr4_1:66540556-66540575 Msa0565660:intron 15.0%
!! AAACATTTATAAAGTAACAT+TGG - chr4_1:66540619-66540638 None:intergenic 15.0%
!! ATTAATGAATAGATAAAACA+AGG - chr4_1:66540937-66540956 None:intergenic 15.0%
!!! CTATTCATTAATTTTTGTTT+AGG + chr4_1:66540945-66540964 Msa0565660:intron 15.0%
!! AAACAAAAAAAAAAAAGAAC+TGG + chr4_1:66541339-66541358 Msa0565660:intron 15.0%
!! TTAAGACAATAGTATTAATT+AGG + chr4_1:66541952-66541971 Msa0565660:intron 15.0%
!! TAAGACAATAGTATTAATTA+GGG + chr4_1:66541953-66541972 Msa0565660:intron 15.0%
!! AAAGTGAAATATATTGAATT+GGG + chr4_1:66542413-66542432 Msa0565660:intron 15.0%
!! AATATATAACTTTACTTGTA+GGG - chr4_1:66542997-66543016 None:intergenic 15.0%
!! AAATATATAACTTTACTTGT+AGG - chr4_1:66542998-66543017 None:intergenic 15.0%
!! TATTTGATATATTTCAACTT+CGG + chr4_1:66543024-66543043 Msa0565660:intron 15.0%
!! CATATCAAAATAAATATTCA+TGG - chr4_1:66543248-66543267 None:intergenic 15.0%
!!! TTATTTTGATATGAAAGAAA+AGG + chr4_1:66543255-66543274 Msa0565660:intron 15.0%
!!! TATTTTGATATGAAAGAAAA+GGG + chr4_1:66543256-66543275 Msa0565660:intron 15.0%
!! CCTAATTAAAATTATTAACT+TGG - chr4_1:66543367-66543386 None:intergenic 15.0%
!!! CCAAGTTAATAATTTTAATT+AGG + chr4_1:66543364-66543383 Msa0565660:intron 15.0%
!! GATAAGTTAAAACTTAAAAA+AGG - chr4_1:66543522-66543541 None:intergenic 15.0%
!! AAATTAAACGTTAATAGAAA+AGG + chr4_1:66543606-66543625 Msa0565660:intron 15.0%
!!! AACAATAAAATTGTTTTGTT+AGG - chr4_1:66543653-66543672 None:intergenic 15.0%
!! AGAAAAAAAAATTGAACTTA+TGG - chr4_1:66543996-66544015 None:intergenic 15.0%
!! TAAAAAATTGTATTTGAGAA+GGG - chr4_1:66544376-66544395 None:intergenic 15.0%
!! TCATTATAAGAAGATACAAT+TGG - chr4_1:66538473-66538492 None:intergenic 20.0%
!! TAACATTTATGATCAGATTA+AGG + chr4_1:66538925-66538944 Msa0565660:CDS 20.0%
!!! ATGTGTTTTTGTTAATTAGT+TGG + chr4_1:66540453-66540472 Msa0565660:intron 20.0%
!!! TTAATGTATGGTTTTATTGT+CGG + chr4_1:66540568-66540587 Msa0565660:intron 20.0%
!!! TTTTCATTGGTTAAAAACAA+TGG - chr4_1:66540761-66540780 None:intergenic 20.0%
!!! TCTTGTTCATAAAAAGTATT+TGG - chr4_1:66541136-66541155 None:intergenic 20.0%
!! CAAGCACAAATAAAAATATT+TGG - chr4_1:66541164-66541183 None:intergenic 20.0%
!!! CACATTTACATTTTTCTTAT+TGG - chr4_1:66541216-66541235 None:intergenic 20.0%
!! TTTACTTATAATAGTGTGAT+CGG + chr4_1:66541633-66541652 Msa0565660:intron 20.0%
!! ACAATTATTTCATAAACATG+CGG - chr4_1:66541686-66541705 None:intergenic 20.0%
!! AAGACAATAGTATTAATTAG+GGG + chr4_1:66541954-66541973 Msa0565660:intron 20.0%
!!! GAAAGTATAAGATATTTTGA+TGG - chr4_1:66542268-66542287 None:intergenic 20.0%
!! CAAAGTGAAATATATTGAAT+TGG + chr4_1:66542412-66542431 Msa0565660:intron 20.0%
!!! GGACAATATTTTTTTACAAA+AGG + chr4_1:66542522-66542541 Msa0565660:intron 20.0%
!! TACAAAAGGTTCAATTATTA+TGG + chr4_1:66542536-66542555 Msa0565660:intron 20.0%
!! ACAAAAGGTTCAATTATTAT+GGG + chr4_1:66542537-66542556 Msa0565660:intron 20.0%
!!! ATATTTTGATTGATAGTCTT+GGG - chr4_1:66542797-66542816 None:intergenic 20.0%
!!! AATATTTTGATTGATAGTCT+TGG - chr4_1:66542798-66542817 None:intergenic 20.0%
!!! ATTGTGGTGTAAATTTTTAT+CGG + chr4_1:66542857-66542876 Msa0565660:intron 20.0%
!! ATATATAACTTTACTTGTAG+GGG - chr4_1:66542996-66543015 None:intergenic 20.0%
!!! TTAAGTTTTAACTTATCCTA+AGG + chr4_1:66543525-66543544 Msa0565660:intron 20.0%
!!! TGTTTTCAATTAAGATAACA+CGG + chr4_1:66543682-66543701 Msa0565660:intron 20.0%
!!! CTTTAAAAGAGTGTTTTTTT+AGG + chr4_1:66543926-66543945 Msa0565660:intron 20.0%
!! AAAAAAAATTGAACTTATGG+TGG - chr4_1:66543993-66544012 None:intergenic 20.0%
!!! TTTTAGGAAAACAATAACTT+AGG - chr4_1:66544031-66544050 None:intergenic 20.0%
!! CTAAAAAATTGTATTTGAGA+AGG - chr4_1:66544377-66544396 None:intergenic 20.0%
!! AAACCTTAGAGAAATTTAAT+AGG + chr4_1:66544540-66544559 Msa0565660:intron 20.0%
!! TCATTGTATGAAGATATAAT+GGG - chr4_1:66545028-66545047 None:intergenic 20.0%
!! TTCATTGTATGAAGATATAA+TGG - chr4_1:66545029-66545048 None:intergenic 20.0%
!! TAACATTTATGATCAGATTA+AGG + chr4_1:66538925-66538944 Msa0565660:CDS 20.0%
! ATCTGATCATAAATGTTATC+AGG - chr4_1:66538923-66538942 None:intergenic 25.0%
! TCAGATTAAGGATATTATCA+TGG + chr4_1:66538937-66538956 Msa0565660:CDS 25.0%
! TTGATCTTCTTAATTATCTC+AGG - chr4_1:66539340-66539359 None:intergenic 25.0%
! AATGCATTTGTTTATCATCA+GGG - chr4_1:66539513-66539532 None:intergenic 25.0%
! ACATTGTCAACAAAATTAGT+TGG - chr4_1:66539736-66539755 None:intergenic 25.0%
!!! AGCATTTTTGAAAGAAGTTT+TGG + chr4_1:66539981-66540000 Msa0565660:CDS 25.0%
! CTTGAACAAACAAAAAACAT+AGG - chr4_1:66540502-66540521 None:intergenic 25.0%
! AAGTAACATTGGTATCTTAA+TGG - chr4_1:66540608-66540627 None:intergenic 25.0%
!!! TCTTTTTTCTCTCTTTTCAT+TGG - chr4_1:66540774-66540793 None:intergenic 25.0%
! AAATTGAAAGTAGACCATAA+TGG - chr4_1:66540898-66540917 None:intergenic 25.0%
! ATATTAGAATTGTCCTCATT+TGG - chr4_1:66541190-66541209 None:intergenic 25.0%
!!! TTTTTTATAACAATGACCGA+AGG - chr4_1:66541559-66541578 None:intergenic 25.0%
! CATTCAATAAATGATCTATG+TGG + chr4_1:66541595-66541614 Msa0565660:intron 25.0%
!!! GAAGTACATTTTAAAAATCC+AGG - chr4_1:66541789-66541808 None:intergenic 25.0%
! ATGTTTACATAAAGAGACAT+AGG - chr4_1:66541811-66541830 None:intergenic 25.0%
! AAGAAATGTGAAAAATGCAA+AGG - chr4_1:66541834-66541853 None:intergenic 25.0%
! AAGACATAAAAATTGTGTTG+GGG - chr4_1:66542102-66542121 None:intergenic 25.0%
! CAAGACATAAAAATTGTGTT+GGG - chr4_1:66542103-66542122 None:intergenic 25.0%
! TAGTTGATCTCTTAAATTGA+AGG + chr4_1:66542221-66542240 Msa0565660:intron 25.0%
! AAAAGAAAGAGAGAGAAAAA+TGG + chr4_1:66542341-66542360 Msa0565660:intron 25.0%
! TATTGGATTGAAAAGTGAAA+TGG + chr4_1:66542486-66542505 Msa0565660:intron 25.0%
!!! TGAAATGGATCAGTTATTTT+AGG + chr4_1:66542501-66542520 Msa0565660:intron 25.0%
! AGTATATTCAAACAGTTGTT+TGG + chr4_1:66542568-66542587 Msa0565660:intron 25.0%
! GTATATTCAAACAGTTGTTT+GGG + chr4_1:66542569-66542588 Msa0565660:intron 25.0%
!! AATTGTAGTTATATCGACTA+TGG + chr4_1:66542601-66542620 Msa0565660:intron 25.0%
!! ATTGTAGTTATATCGACTAT+GGG + chr4_1:66542602-66542621 Msa0565660:intron 25.0%
!! TTTTGATGAGAGAGAATTAT+TGG + chr4_1:66542708-66542727 Msa0565660:intron 25.0%
!!! TATTTTGATTGATAGTCTTG+GGG - chr4_1:66542796-66542815 None:intergenic 25.0%
! TCACAAACACAAATAAAAAG+CGG + chr4_1:66543063-66543082 Msa0565660:intron 25.0%
!!! TTTTGGGTCCATATATATTA+GGG - chr4_1:66543285-66543304 None:intergenic 25.0%
!!! TTTTTGGGTCCATATATATT+AGG - chr4_1:66543286-66543305 None:intergenic 25.0%
! ATATATGGACCCAAAAAATA+AGG + chr4_1:66543289-66543308 Msa0565660:intron 25.0%
! TATATGGACCCAAAAAATAA+GGG + chr4_1:66543290-66543309 Msa0565660:intron 25.0%
!! AGGATAGACAATCTATATTT+TGG - chr4_1:66543633-66543652 None:intergenic 25.0%
!! AAATGTCGATGAGTATTTTA+AGG + chr4_1:66543787-66543806 Msa0565660:intron 25.0%
!!! AATGTCGATGAGTATTTTAA+GGG + chr4_1:66543788-66543807 Msa0565660:intron 25.0%
! ACTAGTACTAACAATAACTT+AGG - chr4_1:66544067-66544086 None:intergenic 25.0%
!!! CAATGTTTTGAGAAAATGAA+AGG - chr4_1:66544688-66544707 None:intergenic 25.0%
! ATTTATAGAGAGATCCTAAA+GGG - chr4_1:66544807-66544826 None:intergenic 25.0%
! TATTTATAGAGAGATCCTAA+AGG - chr4_1:66544808-66544827 None:intergenic 25.0%
!! ACTTTGATAGTAAAGAAGAA+TGG + chr4_1:66545391-66545410 Msa0565660:CDS 25.0%
! ATCTGATCATAAATGTTATC+AGG - chr4_1:66538923-66538942 None:intergenic 25.0%
! TCAGATTAAGGATATTATCA+TGG + chr4_1:66538937-66538956 Msa0565660:CDS 25.0%
! TTCAAAATAATACTCTCTTC+AGG - chr4_1:66545529-66545548 None:intergenic 25.0%
TTGATGCTCTTGAAAATCTA+AGG + chr4_1:66538510-66538529 Msa0565660:CDS 30.0%
ACTTTGATTGTGAAGAAGAA+TGG + chr4_1:66538836-66538855 Msa0565660:intron 30.0%
TTAGTACTTGTGAGTCTATT+AGG + chr4_1:66539017-66539036 Msa0565660:CDS 30.0%
!! TCACAGATAGTTGATAAAAC+TGG + chr4_1:66539043-66539062 Msa0565660:CDS 30.0%
!! TAGTTGATAAAACTGGTTTG+AGG + chr4_1:66539050-66539069 Msa0565660:intron 30.0%
! TGATGATGTTAACATTGGTT+TGG + chr4_1:66539135-66539154 Msa0565660:CDS 30.0%
!! GATGATGTTAACATTGGTTT+GGG + chr4_1:66539136-66539155 Msa0565660:CDS 30.0%
!! TTCATTTCTAGCTTCTTCAT+AGG - chr4_1:66539197-66539216 None:intergenic 30.0%
AAGATTGACAAATCCATTGT+TGG + chr4_1:66539253-66539272 Msa0565660:CDS 30.0%
TCTGAGAAAGATTCTTCTAA+TGG + chr4_1:66539471-66539490 Msa0565660:CDS 30.0%
CTGAGAAAGATTCTTCTAAT+GGG + chr4_1:66539472-66539491 Msa0565660:CDS 30.0%
CAATGCATTTGTTTATCATC+AGG - chr4_1:66539514-66539533 None:intergenic 30.0%
TTCTACAAAGGATTTCCTAA+TGG + chr4_1:66539600-66539619 Msa0565660:CDS 30.0%
AATGTTAGAAAAGCAGTTCT+TGG - chr4_1:66539679-66539698 None:intergenic 30.0%
ATTACTTCAGAGAAAAGTGA+AGG + chr4_1:66539696-66539715 Msa0565660:CDS 30.0%
TTACTTCAGAGAAAAGTGAA+GGG + chr4_1:66539697-66539716 Msa0565660:CDS 30.0%
! CTAATTTTGTTGACAATGTG+TGG + chr4_1:66539737-66539756 Msa0565660:CDS 30.0%
AAGGAGATTTGTAATGAACT+TGG + chr4_1:66540219-66540238 Msa0565660:CDS 30.0%
GAATTGCTTGATGTTTCTTA+AGG + chr4_1:66540389-66540408 Msa0565660:intron 30.0%
! GAACTTTTATTAGTATCACC+AGG + chr4_1:66540475-66540494 Msa0565660:intron 30.0%
TCATCAAAAGTTGTCTCAAA+TGG + chr4_1:66540799-66540818 Msa0565660:intron 30.0%
GACAATGGTATATACCATTA+TGG + chr4_1:66540881-66540900 Msa0565660:intron 30.0%
TTTAACCTATGATCAGATAG+TGG - chr4_1:66541242-66541261 None:intergenic 30.0%
ACCACAAATATTTAGCTATG+AGG + chr4_1:66541282-66541301 Msa0565660:intron 30.0%
TCCTCATAGCTAAATATTTG+TGG - chr4_1:66541286-66541305 None:intergenic 30.0%
GATTGAAAGCTTCAATATTG+CGG + chr4_1:66541404-66541423 Msa0565660:intron 30.0%
TATCAAACGAACCAAATTTG+AGG - chr4_1:66541439-66541458 None:intergenic 30.0%
CCAAGACATAAAAATTGTGT+TGG - chr4_1:66542104-66542123 None:intergenic 30.0%
! CCAACACAATTTTTATGTCT+TGG + chr4_1:66542101-66542120 Msa0565660:intron 30.0%
TCACTTTGCATTTATGATAG+TGG - chr4_1:66542400-66542419 None:intergenic 30.0%
AAGGTTCAATTATTATGGGA+CGG + chr4_1:66542541-66542560 Msa0565660:intron 30.0%
! ATGAGAGAGAATTATTGGTT+AGG + chr4_1:66542713-66542732 Msa0565660:intron 30.0%
ATCAAGACAAACATGAATTG+TGG + chr4_1:66542841-66542860 Msa0565660:intron 30.0%
ACGATTTCAAGGAGTAAAAT+AGG + chr4_1:66542947-66542966 Msa0565660:intron 30.0%
CGATTTCAAGGAGTAAAATA+GGG + chr4_1:66542948-66542967 Msa0565660:intron 30.0%
AACACAAATAAAAAGCGGTT+AGG + chr4_1:66543068-66543087 Msa0565660:intron 30.0%
ATAAATATTCATGGTACTCG+TGG - chr4_1:66543239-66543258 None:intergenic 30.0%
!! GAATGTTAACTTGTCCTTAA+GGG + chr4_1:66543388-66543407 Msa0565660:intron 30.0%
GTATTGTAAATGCTAAGATG+AGG - chr4_1:66543586-66543605 None:intergenic 30.0%
TTTCTCAAGTGTTACATCTT+AGG + chr4_1:66544134-66544153 Msa0565660:intron 30.0%
AAGGAAAGGAAAAACTTTGA+GGG + chr4_1:66544180-66544199 Msa0565660:intron 30.0%
! TTGTATTTGAGAAGGGTTTT+GGG - chr4_1:66544369-66544388 None:intergenic 30.0%
! ATTGTATTTGAGAAGGGTTT+TGG - chr4_1:66544370-66544389 None:intergenic 30.0%
!!! TTTTTTAGTTCCTCCAAATG+AGG + chr4_1:66544389-66544408 Msa0565660:intron 30.0%
TGGAAGAAATAGAGGAAAAT+CGG - chr4_1:66544462-66544481 None:intergenic 30.0%
!!! TAAGGTTTTGTTTGCGAATT+TGG - chr4_1:66544528-66544547 None:intergenic 30.0%
GTGCCTATTAAATTTCTCTA+AGG - chr4_1:66544546-66544565 None:intergenic 30.0%
TTAATAGGCACATGTAGTAA+TGG + chr4_1:66544555-66544574 Msa0565660:intron 30.0%
TCTTCATGGTATTATTGTGT+TGG + chr4_1:66544616-66544635 Msa0565660:intron 30.0%
TTGGAATTATAAGATCTCAG+AGG + chr4_1:66544635-66544654 Msa0565660:intron 30.0%
AAAGGGATAAGTGAAATGAA+GGG - chr4_1:66544790-66544809 None:intergenic 30.0%
TAAAGGGATAAGTGAAATGA+AGG - chr4_1:66544791-66544810 None:intergenic 30.0%
TTCATTTCACTTATCCCTTT+AGG + chr4_1:66544790-66544809 Msa0565660:intron 30.0%
TCTTTACTATCAAAGTCAGT+GGG - chr4_1:66545387-66545406 None:intergenic 30.0%
TTCTTTACTATCAAAGTCAG+TGG - chr4_1:66545388-66545407 None:intergenic 30.0%
! TCACAAACTGTTGATAAAAC+TGG + chr4_1:66545601-66545620 Msa0565660:CDS 30.0%
! ATCAAGTTTGTTTGCCTTTG+TGG - chr4_1:66538384-66538403 None:intergenic 35.0%
GTTGATCATCAACATCAACA+TGG - chr4_1:66538430-66538449 None:intergenic 35.0%
ACAATTGGTGCAATAGATAG+AGG - chr4_1:66538458-66538477 None:intergenic 35.0%
TTGATCTCCAACAACAACAA+TGG - chr4_1:66538573-66538592 None:intergenic 35.0%
TGATACCAGCTAATGATTCA+AGG - chr4_1:66538616-66538635 None:intergenic 35.0%
TGGACAAGGAATTTGTACAA+GGG + chr4_1:66538646-66538665 Msa0565660:CDS 35.0%
!! AATTTGTACAAGGGTACCTT+TGG + chr4_1:66538655-66538674 Msa0565660:CDS 35.0%
CAAACAAGTTTCAACTGATG+AGG + chr4_1:66538736-66538755 Msa0565660:CDS 35.0%
TCTTCACAATCAAAGTCAGT+GGG - chr4_1:66538832-66538851 None:intergenic 35.0%
TTCTTCACAATCAAAGTCAG+TGG - chr4_1:66538833-66538852 None:intergenic 35.0%
GACATTAGCTGTTGTAACAA+AGG + chr4_1:66539072-66539091 Msa0565660:intron 35.0%
TAAATCACCTGAAGGTTTGT+TGG + chr4_1:66539099-66539118 Msa0565660:intron 35.0%
! ACTGCTGATGATGTTAACAT+TGG + chr4_1:66539130-66539149 Msa0565660:CDS 35.0%
CAAAACAGGAATACCAACAA+TGG - chr4_1:66539269-66539288 None:intergenic 35.0%
! CATTGTTGGTATTCCTGTTT+TGG + chr4_1:66539267-66539286 Msa0565660:intron 35.0%
ATCTGCCAATGAAGTCAAAT+TGG - chr4_1:66539407-66539426 None:intergenic 35.0%
AACAAATGCATTGTACTGCT+CGG + chr4_1:66539521-66539540 Msa0565660:CDS 35.0%
TGCTGAAAGTGATTCTACAA+AGG + chr4_1:66539588-66539607 Msa0565660:CDS 35.0%
CAATTAACTTAGCTTCCTCA+AGG - chr4_1:66539639-66539658 None:intergenic 35.0%
CTTGAGGAAGCTAAGTTAAT+TGG + chr4_1:66539637-66539656 Msa0565660:CDS 35.0%
TTTGGAAAGGGTTGTTATCT+CGG + chr4_1:66539765-66539784 Msa0565660:CDS 35.0%
TTATATTCCTGCAAGTACTC+CGG - chr4_1:66539940-66539959 None:intergenic 35.0%
TAATCTTGCCTTCAAGTCAA+AGG - chr4_1:66540103-66540122 None:intergenic 35.0%
AGGCAAGATTAATTGCCTAT+TGG + chr4_1:66540112-66540131 Msa0565660:CDS 35.0%
GATTAACAATGATCTGCAGA+AGG + chr4_1:66540200-66540219 Msa0565660:CDS 35.0%
GAGATTTGTAATGAACTTGG+TGG + chr4_1:66540222-66540241 Msa0565660:CDS 35.0%
TGTCTCTTACCAGAAATAGA+TGG - chr4_1:66540276-66540295 None:intergenic 35.0%
GTAAGAGACAAAGTTTAAGC+AGG + chr4_1:66540286-66540305 Msa0565660:CDS 35.0%
GCTTGATGTTTCTTAAGGAT+TGG + chr4_1:66540394-66540413 Msa0565660:intron 35.0%
!! CTTAAGGATTGGTCTTTGTT+TGG + chr4_1:66540405-66540424 Msa0565660:intron 35.0%
TTTGTTTGGATCTATCATGC+AGG + chr4_1:66540419-66540438 Msa0565660:intron 35.0%
CAAACAAAAAACATAGGACC+TGG - chr4_1:66540496-66540515 None:intergenic 35.0%
GTTAAAAAGTTGTCACACAG+TGG - chr4_1:66540681-66540700 None:intergenic 35.0%
ACGAGTTAATCGACAATCTA+CGG + chr4_1:66541458-66541477 Msa0565660:intron 35.0%
TTATAACAATGACCGAAGGA+GGG - chr4_1:66541555-66541574 None:intergenic 35.0%
TTTATAACAATGACCGAAGG+AGG - chr4_1:66541556-66541575 None:intergenic 35.0%
ACTTATAATAGTGTGATCGG+AGG + chr4_1:66541636-66541655 Msa0565660:intron 35.0%
GTGATAGCTGGATTTCATAT+AGG - chr4_1:66541745-66541764 None:intergenic 35.0%
ATATGAAATCCAGCTATCAC+CGG + chr4_1:66541745-66541764 Msa0565660:intron 35.0%
!!! TAATTTTTTCCGGTGATAGC+TGG - chr4_1:66541757-66541776 None:intergenic 35.0%
AAAATAAGACTCGTGCAACT+CGG - chr4_1:66542202-66542221 None:intergenic 35.0%
ATGAACGAATGACTCAGTTA+GGG - chr4_1:66542296-66542315 None:intergenic 35.0%
AATGAACGAATGACTCAGTT+AGG - chr4_1:66542297-66542316 None:intergenic 35.0%
! TAAGTGCTCTTGTTATGTAC+TGG + chr4_1:66542367-66542386 Msa0565660:intron 35.0%
TTCAATTATTATGGGACGGA+GGG + chr4_1:66542545-66542564 Msa0565660:intron 35.0%
! TAGTTATATCGACTATGGGT+GGG + chr4_1:66542606-66542625 Msa0565660:intron 35.0%
AAGGGAGTCCCTAATATATA+TGG + chr4_1:66543274-66543293 Msa0565660:intron 35.0%
!!! TCGGTGAACCCTTATTTTTT+GGG - chr4_1:66543301-66543320 None:intergenic 35.0%
!!! ATCGGTGAACCCTTATTTTT+TGG - chr4_1:66543302-66543321 None:intergenic 35.0%
AAAAAATAAGGGTTCACCGA+TGG + chr4_1:66543301-66543320 Msa0565660:intron 35.0%
!! GGAATGTTAACTTGTCCTTA+AGG + chr4_1:66543387-66543406 Msa0565660:intron 35.0%
!! TCATGTTAACTTGTCTCCTT+AGG - chr4_1:66543544-66543563 None:intergenic 35.0%
TTCATATGATAGTCTCGCTA+AGG - chr4_1:66543957-66543976 None:intergenic 35.0%
! ACTAGTCTAGCATACATGAA+TGG + chr4_1:66544081-66544100 Msa0565660:intron 35.0%
GAAGGAAAGGAAAAACTTTG+AGG + chr4_1:66544179-66544198 Msa0565660:intron 35.0%
AGGAAAGGAAAAACTTTGAG+GGG + chr4_1:66544181-66544200 Msa0565660:intron 35.0%
AATACAAAACCCTCCTCATT+TGG - chr4_1:66544405-66544424 None:intergenic 35.0%
!! TTTTGTTTGCGAATTTGGAG+GGG - chr4_1:66544523-66544542 None:intergenic 35.0%
!!! GTTTTGTTTGCGAATTTGGA+GGG - chr4_1:66544524-66544543 None:intergenic 35.0%
!! ATCATGCAGTTTTGTCTTCA+TGG + chr4_1:66544602-66544621 Msa0565660:intron 35.0%
TTTGCTGAGTTTGTGATGAA+TGG - chr4_1:66544849-66544868 None:intergenic 35.0%
ATTCATCACAAACTCAGCAA+AGG + chr4_1:66544848-66544867 Msa0565660:intron 35.0%
CACTTCACTTGTCCAATAAA+TGG + chr4_1:66544901-66544920 Msa0565660:intron 35.0%
! ATTGAGGTTGATCATCAACA+TGG - chr4_1:66544991-66545010 None:intergenic 35.0%
TTGACGCGCTTGAAAATTTA+AGG + chr4_1:66545065-66545084 Msa0565660:CDS 35.0%
TTGATCACCAACAACAACAA+TGG - chr4_1:66545128-66545147 None:intergenic 35.0%
TTATACCAGCTAATGACTCA+AGG - chr4_1:66545171-66545190 None:intergenic 35.0%
TTATACTCCAAAACAAGCTC+TGG - chr4_1:66545268-66545287 None:intergenic 35.0%
!!! GAGCTTGTTTTGGAGTATAA+TGG + chr4_1:66545268-66545287 Msa0565660:CDS 35.0%
CTTTACTATCAAAGTCAGTG+GGG - chr4_1:66545386-66545405 None:intergenic 35.0%
AGATCAACCATAGTAAGATC+AGG - chr4_1:66545421-66545440 None:intergenic 35.0%
TTACTACTTGTGAGTCGATA+AGG + chr4_1:66545572-66545591 Msa0565660:CDS 35.0%
GTCTTGGTTATGTTTGTGTA+AGG + chr4_1:66545710-66545729 Msa0565660:CDS 35.0%
GTTTGTGTAAGGAATCGAAT+TGG + chr4_1:66545721-66545740 Msa0565660:CDS 35.0%
TGGAAACAAGAGTTCCACAA+AGG + chr4_1:66538367-66538386 Msa0565660:CDS 40.0%
!!! TTTTCAAGAGCATCAAGCAC+TGG - chr4_1:66538506-66538525 None:intergenic 40.0%
CGTCTCAACATTGCTAAAGA+GGG + chr4_1:66538533-66538552 Msa0565660:CDS 40.0%
! CTTCCAACCATTGTTGTTGT+TGG + chr4_1:66538563-66538582 Msa0565660:CDS 40.0%
TCTCCAACAACAACAATGGT+TGG - chr4_1:66538569-66538588 None:intergenic 40.0%
GTTGTTGGAGATCAATCATC+TGG + chr4_1:66538578-66538597 Msa0565660:CDS 40.0%
AGTGTCCTTGAATCATTAGC+TGG + chr4_1:66538608-66538627 Msa0565660:intron 40.0%
GTGGACAAGGAATTTGTACA+AGG + chr4_1:66538645-66538664 Msa0565660:CDS 40.0%
! TTTTGCAGCCTCATAACCAA+AGG - chr4_1:66538674-66538693 None:intergenic 40.0%
TTGTACTCCAAAACAAGCTC+TGG - chr4_1:66538713-66538732 None:intergenic 40.0%
!!! GAGCTTGTTTTGGAGTACAA+TGG + chr4_1:66538713-66538732 Msa0565660:CDS 40.0%
CTTCACAATCAAAGTCAGTG+GGG - chr4_1:66538831-66538850 None:intergenic 40.0%
AGATCAACCATTGTAAGGTC+AGG - chr4_1:66538866-66538885 None:intergenic 40.0%
CTGGAAGATCAACCATTGTA+AGG - chr4_1:66538871-66538890 None:intergenic 40.0%
CTTACAATGGTTGATCTTCC+AGG + chr4_1:66538869-66538888 Msa0565660:CDS 40.0%
ATAACTCGTGTTCCTGTACA+TGG + chr4_1:66538893-66538912 Msa0565660:CDS 40.0%
!! TTATCAGGTTGACCATGTAC+AGG - chr4_1:66538908-66538927 None:intergenic 40.0%
TTGAGGATAATGCTCTCTTC+AGG - chr4_1:66538974-66538993 None:intergenic 40.0%
CAGTAGCAGAAAGAACATTG+AGG - chr4_1:66538991-66539010 None:intergenic 40.0%
AAGGCTGATAAATCACCTGA+AGG + chr4_1:66539091-66539110 Msa0565660:intron 40.0%
ACTTTCTCCAACAAACCTTC+AGG - chr4_1:66539109-66539128 None:intergenic 40.0%
GTTTGTGTGAGAAATCGCAT+CGG + chr4_1:66539163-66539182 Msa0565660:CDS 40.0%
TTTGTGTGAGAAATCGCATC+GGG + chr4_1:66539164-66539183 Msa0565660:CDS 40.0%
GCAGTTCTTGGCATGAAATT+TGG - chr4_1:66539667-66539686 None:intergenic 40.0%
TGACAATGTGTGGAGCTATT+TGG + chr4_1:66539747-66539766 Msa0565660:CDS 40.0%
ATGTGTGGAGCTATTTGGAA+AGG + chr4_1:66539752-66539771 Msa0565660:CDS 40.0%
TGTGTGGAGCTATTTGGAAA+GGG + chr4_1:66539753-66539772 Msa0565660:CDS 40.0%
! ACTGGTAATAGTTTGCAGAG+TGG - chr4_1:66539801-66539820 None:intergenic 40.0%
TGCAAACTATTACCAGTTGC+AGG + chr4_1:66539804-66539823 Msa0565660:intron 40.0%
AGCTTGCATCACATGTTGAA+TGG - chr4_1:66539881-66539900 None:intergenic 40.0%
TGTGATGCAAGCTGTTGATA+TGG + chr4_1:66539888-66539907 Msa0565660:CDS 40.0%
! TGTTGATATGGAGAAGCACA+CGG + chr4_1:66539900-66539919 Msa0565660:CDS 40.0%
TCCGATCAATGTGTTGAATC+AGG + chr4_1:66540077-66540096 Msa0565660:intron 40.0%
GCCTGATTCAACACATTGAT+CGG - chr4_1:66540081-66540100 None:intergenic 40.0%
AGAGACTGTTGCCAACATTA+TGG + chr4_1:66540335-66540354 Msa0565660:intron 40.0%
TCCAATCCTGTCCATAATGT+TGG - chr4_1:66540349-66540368 None:intergenic 40.0%
TGATCACAAAATGCAACGAC+AGG - chr4_1:66540535-66540554 None:intergenic 40.0%
GACGCATTCTAATTGGACAA+TGG + chr4_1:66540866-66540885 Msa0565660:intron 40.0%
TTTGTGCTTGTGTCCAAATG+AGG + chr4_1:66541174-66541193 Msa0565660:intron 40.0%
TGTCTCCACTATCTGATCAT+AGG + chr4_1:66541234-66541253 Msa0565660:intron 40.0%
GGAAGCTAAGACCTCAAATT+TGG + chr4_1:66541425-66541444 Msa0565660:intron 40.0%
TTTCTATGTACACCCTCCTT+CGG + chr4_1:66541540-66541559 Msa0565660:intron 40.0%
CATGCGGTAAATTCAATGCT+TGG - chr4_1:66541670-66541689 None:intergenic 40.0%
AGACGAAGTGAGTAACATCT+TGG + chr4_1:66542073-66542092 Msa0565660:intron 40.0%
GACGAAGTGAGTAACATCTT+GGG + chr4_1:66542074-66542093 Msa0565660:intron 40.0%
GTTCAATTATTATGGGACGG+AGG + chr4_1:66542544-66542563 Msa0565660:intron 40.0%
! GTAGTTATATCGACTATGGG+TGG + chr4_1:66542605-66542624 Msa0565660:intron 40.0%
! AGTTATATCGACTATGGGTG+GGG + chr4_1:66542607-66542626 Msa0565660:intron 40.0%
GGTTTCAGTGACTTTGTGTT+GGG + chr4_1:66542628-66542647 Msa0565660:intron 40.0%
! GTGACTTTGGTGTATGTTAG+AGG + chr4_1:66542650-66542669 Msa0565660:intron 40.0%
TAGGAGAGAGATAGAGACAA+AGG + chr4_1:66542732-66542751 Msa0565660:intron 40.0%
ACCAGTCACTTACGATTTCA+AGG + chr4_1:66542936-66542955 Msa0565660:intron 40.0%
TCCTTGAAATCGTAAGTGAC+TGG - chr4_1:66542940-66542959 None:intergenic 40.0%
TAACTTTACTTGTAGGGGAG+TGG - chr4_1:66542991-66543010 None:intergenic 40.0%
GTACAGAAGGTCATTTGCAT+AGG - chr4_1:66543328-66543347 None:intergenic 40.0%
TTTCTGAACTTGTGCCCTTA+AGG - chr4_1:66543405-66543424 None:intergenic 40.0%
GTCTAGCATACATGAATGGA+TGG + chr4_1:66544085-66544104 Msa0565660:intron 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG + chr4_1:66544152-66544171 Msa0565660:intron 40.0%
!!! TATTTGAGAAGGGTTTTGGG+AGG - chr4_1:66544366-66544385 None:intergenic 40.0%
! TTTAGTTCCTCCAAATGAGG+AGG + chr4_1:66544392-66544411 Msa0565660:intron 40.0%
TTAGTTCCTCCAAATGAGGA+GGG + chr4_1:66544393-66544412 Msa0565660:intron 40.0%
GAAATAGAGGAAAATCGGAG+AGG - chr4_1:66544457-66544476 None:intergenic 40.0%
TGAGCAAGTGGAAGAAATAG+AGG - chr4_1:66544470-66544489 None:intergenic 40.0%
GGAAAAAAGGAATGAGCAAG+TGG - chr4_1:66544482-66544501 None:intergenic 40.0%
!!! GGTTTTGTTTGCGAATTTGG+AGG - chr4_1:66544525-66544544 None:intergenic 40.0%
TTACTACCATGCACTTAACG+AGG + chr4_1:66544660-66544679 Msa0565660:intron 40.0%
ATCTTGCACAGAACATTTCG+GGG - chr4_1:66544744-66544763 None:intergenic 40.0%
CATCTTGCACAGAACATTTC+GGG - chr4_1:66544745-66544764 None:intergenic 40.0%
GCATCTTGCACAGAACATTT+CGG - chr4_1:66544746-66544765 None:intergenic 40.0%
AATGAAGGGACAGTCATAGT+GGG - chr4_1:66544776-66544795 None:intergenic 40.0%
AAATGAAGGGACAGTCATAG+TGG - chr4_1:66544777-66544796 None:intergenic 40.0%
CTTGTCCAATAAATGGCTCA+TGG + chr4_1:66544908-66544927 Msa0565660:intron 40.0%
CCTTTCCATGAGCCATTTAT+TGG - chr4_1:66544916-66544935 None:intergenic 40.0%
CCAATAAATGGCTCATGGAA+AGG + chr4_1:66544913-66544932 Msa0565660:intron 40.0%
TTCCCTCTTTCGCAATATTC+AGG - chr4_1:66545093-66545112 None:intergenic 40.0%
TCACCAACAACAACAATGGT+GGG - chr4_1:66545124-66545143 None:intergenic 40.0%
ATCACCAACAACAACAATGG+TGG - chr4_1:66545125-66545144 None:intergenic 40.0%
!! AATTTGCACAAGGGTACCAT+TGG + chr4_1:66545210-66545229 Msa0565660:CDS 40.0%
! TTTTGCAGCCTCATAACCAA+TGG - chr4_1:66538674-66538693 None:intergenic 40.0%
CAAGCAAGTTTCAACTGATG+AGG + chr4_1:66545291-66545310 Msa0565660:CDS 40.0%
TGGAGTTCCTGATCTTACTA+TGG + chr4_1:66545411-66545430 Msa0565660:CDS 40.0%
CTTACTATGGTTGATCTTCC+AGG + chr4_1:66545424-66545443 Msa0565660:CDS 40.0%
ATAACTCGTGTTCCTGTTCA+TGG + chr4_1:66545448-66545467 Msa0565660:CDS 40.0%
!! TTATCAGGTTGACCATGAAC+AGG - chr4_1:66545463-66545482 None:intergenic 40.0%
AAGGCTGATAAATCTCCTGA+AGG + chr4_1:66545649-66545668 Msa0565660:CDS 40.0%
TAAATCTCCTGAAGGTTTGC+TGG + chr4_1:66545657-66545676 Msa0565660:CDS 40.0%
ACAGCTGACGATGTTAACAT+TGG + chr4_1:66545688-66545707 Msa0565660:CDS 40.0%
! GACGATGTTAACATTGGTCT+TGG + chr4_1:66545694-66545713 Msa0565660:CDS 40.0%
AAGAGTCTTACGAAGATGCA+AGG + chr4_1:66545746-66545765 Msa0565660:CDS 40.0%
! ACAAGCTTTTGAGCCAAAAC+AGG - chr4_1:66545807-66545826 None:intergenic 40.0%
GGTGCAATAGATAGAGGTTG+AGG - chr4_1:66538452-66538471 None:intergenic 45.0%
GCGTCTCAACATTGCTAAAG+AGG + chr4_1:66538532-66538551 Msa0565660:CDS 45.0%
GTACAAATTCCTTGTCCACG+TGG - chr4_1:66538644-66538663 None:intergenic 45.0%
!! CAAGGGTACCTTTGGTTATG+AGG + chr4_1:66538663-66538682 Msa0565660:CDS 45.0%
AATCAAAGTCAGTGGGGTGT+TGG - chr4_1:66538825-66538844 None:intergenic 45.0%
TGGTGTTCCTGACCTTACAA+TGG + chr4_1:66538856-66538875 Msa0565660:CDS 45.0%
ACAGGAACACGAGTTATACC+TGG - chr4_1:66538890-66538909 None:intergenic 45.0%
TTGTGTGAGAAATCGCATCG+GGG + chr4_1:66539165-66539184 Msa0565660:CDS 45.0%
ACAAGCTTCTGAGCCAAAAC+AGG - chr4_1:66539283-66539302 None:intergenic 45.0%
! GCCTGCCAATTTGACTTCAT+TGG + chr4_1:66539399-66539418 Msa0565660:CDS 45.0%
GCCAATGAAGTCAAATTGGC+AGG - chr4_1:66539403-66539422 None:intergenic 45.0%
GGACTACGATCTCTTCCATT+AGG - chr4_1:66539618-66539637 None:intergenic 45.0%
! CACGGATTACACTTGCAATC+CGG + chr4_1:66539918-66539937 Msa0565660:CDS 45.0%
CCTTCAAGCTTCACAGTACT+TGG - chr4_1:66540021-66540040 None:intergenic 45.0%
! CCAAGTACTGTGAAGCTTGA+AGG + chr4_1:66540018-66540037 Msa0565660:CDS 45.0%
!! GAATCAGGCCTTTGACTTGA+AGG + chr4_1:66540092-66540111 Msa0565660:intron 45.0%
CCTCAGCACAATCTTCCAAT+AGG - chr4_1:66540130-66540149 None:intergenic 45.0%
CCTATTGGAAGATTGTGCTG+AGG + chr4_1:66540127-66540146 Msa0565660:CDS 45.0%
ATTGGAAGATTGTGCTGAGG+AGG + chr4_1:66540130-66540149 Msa0565660:CDS 45.0%
GAGGAGTCTCCATCTATTTC+TGG + chr4_1:66540264-66540283 Msa0565660:CDS 45.0%
CTGTTGCCAACATTATGGAC+AGG + chr4_1:66540340-66540359 Msa0565660:intron 45.0%
GCCAACATTATGGACAGGAT+TGG + chr4_1:66540345-66540364 Msa0565660:intron 45.0%
ATGGACAGGATTGGAGTCTA+TGG + chr4_1:66540354-66540373 Msa0565660:intron 45.0%
GTTTGGATCTATCATGCAGG+TGG + chr4_1:66540422-66540441 Msa0565660:intron 45.0%
GTCACGTGACGCATTCTAAT+TGG + chr4_1:66540859-66540878 Msa0565660:intron 45.0%
ACGAATGACTCAGTTAGGGA+CGG - chr4_1:66542292-66542311 None:intergenic 45.0%
GGGTTTCAGTGACTTTGTGT+TGG + chr4_1:66542627-66542646 Msa0565660:intron 45.0%
GACTTTGTGTTGGGTGACTT+TGG + chr4_1:66542637-66542656 Msa0565660:intron 45.0%
!! TCTTTGGCTTCGGTGTCTTT+CGG - chr4_1:66542760-66542779 None:intergenic 45.0%
! ATAGTCTTGGGGTAGCACTT+GGG - chr4_1:66542785-66542804 None:intergenic 45.0%
GGTCATTTGCATAGGTCCAT+CGG - chr4_1:66543320-66543339 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr4_1:66544156-66544175 Msa0565660:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr4_1:66544157-66544176 Msa0565660:intron 45.0%
!!! AGAAGGGTTTTGGGAGGTTA+TGG - chr4_1:66544360-66544379 None:intergenic 45.0%
ACAAAACCCTCCTCATTTGG+AGG - chr4_1:66544402-66544421 None:intergenic 45.0%
TAGAGGAAAATCGGAGAGGA+GGG - chr4_1:66544453-66544472 None:intergenic 45.0%
ATAGAGGAAAATCGGAGAGG+AGG - chr4_1:66544454-66544473 None:intergenic 45.0%
AGGGGAAGGTTTGGGAAAAA+AGG - chr4_1:66544495-66544514 None:intergenic 45.0%
TTTGCGAATTTGGAGGGGAT+AGG - chr4_1:66544518-66544537 None:intergenic 45.0%
AAGGTTCCTCGTTAAGTGCA+TGG - chr4_1:66544669-66544688 None:intergenic 45.0%
! GGAGCTACATTTGGGATGTT+GGG - chr4_1:66544716-66544735 None:intergenic 45.0%
! TGGAGCTACATTTGGGATGT+TGG - chr4_1:66544717-66544736 None:intergenic 45.0%
GGGGAATTGGAGCTACATTT+GGG - chr4_1:66544724-66544743 None:intergenic 45.0%
ACAGAACATTTCGGGGGAAT+TGG - chr4_1:66544737-66544756 None:intergenic 45.0%
TCTTGCACAGAACATTTCGG+GGG - chr4_1:66544743-66544762 None:intergenic 45.0%
!! TTTTCAAGCGCGTCAAGAAC+TGG - chr4_1:66545061-66545080 None:intergenic 45.0%
CGCCTGAATATTGCGAAAGA+GGG + chr4_1:66545088-66545107 Msa0565660:CDS 45.0%
! CAACAACAATGGTGGGAAGT+TGG - chr4_1:66545117-66545136 None:intergenic 45.0%
! CTTCCCACCATTGTTGTTGT+TGG + chr4_1:66545118-66545137 Msa0565660:CDS 45.0%
!! GTTGTTGGTGATCAATCGTC+TGG + chr4_1:66545133-66545152 Msa0565660:CDS 45.0%
AGTGTCCTTGAGTCATTAGC+TGG + chr4_1:66545163-66545182 Msa0565660:CDS 45.0%
TGGCCAAGGAATTTGCACAA+GGG + chr4_1:66545201-66545220 Msa0565660:CDS 45.0%
GTACCCTTGTGCAAATTCCT+TGG - chr4_1:66545207-66545226 None:intergenic 45.0%
!! CAAGGGTACCATTGGTTATG+AGG + chr4_1:66545218-66545237 Msa0565660:CDS 45.0%
TGCTATAAACACAGCCACTG+AGG + chr4_1:66545327-66545346 Msa0565660:CDS 45.0%
TATCAAAGTCAGTGGGGTGT+TGG - chr4_1:66545380-66545399 None:intergenic 45.0%
ACAGGAACACGAGTTATACC+TGG - chr4_1:66538890-66538909 None:intergenic 45.0%
! AGTGTCACACACTCCTGTTT+TGG + chr4_1:66545791-66545810 Msa0565660:CDS 45.0%
!!! TAACAAAATATTTTTTATTT+GGG - chr4_1:66541005-66541024 None:intergenic 5.0%
!!! ATAACAAAATATTTTTTATT+TGG - chr4_1:66541006-66541025 None:intergenic 5.0%
!! AGAAAAAATAAAATTAATTT+GGG - chr4_1:66541525-66541544 None:intergenic 5.0%
!! TAGAAAAAATAAAATTAATT+TGG - chr4_1:66541526-66541545 None:intergenic 5.0%
!! TAGAAAAAAATAATTAATAT+TGG + chr4_1:66542469-66542488 Msa0565660:intron 5.0%
!! TACTATTTAAATATTATTAA+AGG - chr4_1:66543817-66543836 None:intergenic 5.0%
GCTCTGGCTGTGGAAGTAAA+TGG - chr4_1:66538697-66538716 None:intergenic 50.0%
!! TCCACAGCCAGAGCTTGTTT+TGG + chr4_1:66538703-66538722 Msa0565660:CDS 50.0%
! TCCAAAACAAGCTCTGGCTG+TGG - chr4_1:66538707-66538726 None:intergenic 50.0%
TGCTATAAACGCAGCCACTG+AGG + chr4_1:66538772-66538791 Msa0565660:CDS 50.0%
!! TGGGGTGTTGGAAATCCCTT+TGG - chr4_1:66538813-66538832 None:intergenic 50.0%
GCATTGTACTGCTCGGTTAG+TGG + chr4_1:66539528-66539547 Msa0565660:intron 50.0%
GGAAGAGATCGTAGTCCTTG+AGG + chr4_1:66539621-66539640 Msa0565660:CDS 50.0%
TACGAGTAGCAACCTGCAAC+TGG - chr4_1:66539819-66539838 None:intergenic 50.0%
! TTGCAATCCGGAGTACTTGC+AGG + chr4_1:66539930-66539949 Msa0565660:CDS 50.0%
! AACTTGGTGGCAGTGTTGAG+AGG + chr4_1:66540235-66540254 Msa0565660:CDS 50.0%
! CACTTGGGTGTCTTTGGCTT+CGG - chr4_1:66542770-66542789 None:intergenic 50.0%
! GATAGTCTTGGGGTAGCACT+TGG - chr4_1:66542786-66542805 None:intergenic 50.0%
TTACTTGTAGGGGAGTGGTC+AGG - chr4_1:66542986-66543005 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr4_1:66544155-66544174 Msa0565660:intron 50.0%
!!! GGGTTTTGGGAGGTTATGGA+GGG - chr4_1:66544356-66544375 None:intergenic 50.0%
!!! AGGGTTTTGGGAGGTTATGG+AGG - chr4_1:66544357-66544376 None:intergenic 50.0%
AAATCGGAGAGGAGGGCTTT+GGG - chr4_1:66544446-66544465 None:intergenic 50.0%
AAAATCGGAGAGGAGGGCTT+TGG - chr4_1:66544447-66544466 None:intergenic 50.0%
GAATTTGGAGGGGATAGGAG+GGG - chr4_1:66544513-66544532 None:intergenic 50.0%
CGAATTTGGAGGGGATAGGA+GGG - chr4_1:66544514-66544533 None:intergenic 50.0%
GGGGGAATTGGAGCTACATT+TGG - chr4_1:66544725-66544744 None:intergenic 50.0%
!! GACAGTCATAGTGGGTTGGT+TGG - chr4_1:66544768-66544787 None:intergenic 50.0%
!! AAGGGACAGTCATAGTGGGT+TGG - chr4_1:66544772-66544791 None:intergenic 50.0%
GGTGCAACAGTGAGAGATTG+AGG - chr4_1:66545007-66545026 None:intergenic 50.0%
GCGCCTGAATATTGCGAAAG+AGG + chr4_1:66545087-66545106 Msa0565660:CDS 50.0%
GCTGGTATAAGTTTGCCACG+TGG + chr4_1:66545181-66545200 Msa0565660:CDS 50.0%
ATAAGTTTGCCACGTGGCCA+AGG + chr4_1:66545187-66545206 Msa0565660:CDS 50.0%
GTGGCCAAGGAATTTGCACA+AGG + chr4_1:66545200-66545219 Msa0565660:CDS 50.0%
!! TCCACAGCCAGAGCTTGTTT+TGG + chr4_1:66538703-66538722 Msa0565660:CDS 50.0%
! TCCAAAACAAGCTCTGGCTG+TGG - chr4_1:66538707-66538726 None:intergenic 50.0%
!! TGGGGTGTTGGAAATCCCTT+TGG - chr4_1:66538813-66538832 None:intergenic 50.0%
!! AACGCTTGCTGTCGTGACAA+AGG + chr4_1:66545630-66545649 Msa0565660:CDS 50.0%
!! TCCTGAAGGTTTGCTGGAGA+AGG + chr4_1:66545663-66545682 Msa0565660:CDS 50.0%
ACCTTCTCCAGCAAACCTTC+AGG - chr4_1:66545667-66545686 None:intergenic 50.0%
ATCAGCTTGCCACGTGGACA+AGG + chr4_1:66538632-66538651 Msa0565660:CDS 55.0%
!! AGCTTGCTGGCACTGCCAAA+GGG + chr4_1:66538795-66538814 Msa0565660:CDS 55.0%
TGTGAGAAATCGCATCGGGG+AGG + chr4_1:66539168-66539187 Msa0565660:CDS 55.0%
GGTTGCTACTCGTAGAGCTG+TGG + chr4_1:66539825-66539844 Msa0565660:intron 55.0%
! CAGTGTTGAGAGGCTGCTTG+AGG + chr4_1:66540245-66540264 Msa0565660:CDS 55.0%
GGGTAGCACTTGGGTGTCTT+TGG - chr4_1:66542776-66542795 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + chr4_1:66544161-66544180 Msa0565660:intron 55.0%
CGAGTTTGGAGGGGAAGGAA+AGG + chr4_1:66544166-66544185 Msa0565660:intron 55.0%
AATCGGAGAGGAGGGCTTTG+GGG - chr4_1:66544445-66544464 None:intergenic 55.0%
GGGATAGGAGGGGAAGGTTT+GGG - chr4_1:66544503-66544522 None:intergenic 55.0%
GCGAATTTGGAGGGGATAGG+AGG - chr4_1:66544515-66544534 None:intergenic 55.0%
GTGCAAATTCCTTGGCCACG+TGG - chr4_1:66545199-66545218 None:intergenic 55.0%
! CAAGCTCTGGCTGTGGAAGT+GGG - chr4_1:66538700-66538719 None:intergenic 55.0%
! ACAAGCTCTGGCTGTGGAAG+TGG - chr4_1:66538701-66538720 None:intergenic 55.0%
!! AGCTTGCTGGCACTGCCAAA+GGG + chr4_1:66538795-66538814 Msa0565660:CDS 55.0%
GCTGGTATCAGCTTGCCACG+TGG + chr4_1:66538626-66538645 Msa0565660:CDS 60.0%
AGTGCCAGCAAGCTCCTCAG+TGG - chr4_1:66538789-66538808 None:intergenic 60.0%
!! GAGCTTGCTGGCACTGCCAA+AGG + chr4_1:66538794-66538813 Msa0565660:CDS 60.0%
GGGGATAGGAGGGGAAGGTT+TGG - chr4_1:66544504-66544523 None:intergenic 60.0%
TTGGAGGGGATAGGAGGGGA+AGG - chr4_1:66544509-66544528 None:intergenic 60.0%
ACAGCCACTGAGGAGCTTGC+TGG + chr4_1:66545337-66545356 Msa0565660:CDS 60.0%
AGTGCCAGCAAGCTCCTCAG+TGG - chr4_1:66538789-66538808 None:intergenic 60.0%
!! GAGCTTGCTGGCACTGCCAA+AGG + chr4_1:66538794-66538813 Msa0565660:CDS 60.0%
GCAGCCACTGAGGAGCTTGC+TGG + chr4_1:66538782-66538801 Msa0565660:CDS 65.0%
GCTCTGGCTGTGGAAGTGGG+TGG - chr4_1:66545252-66545271 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66538359 66545843 66538359 ID=Msa0565660;Name=Msa0565660
chr4_1 mRNA 66538359 66545843 66538359 ID=Msa0565660-mRNA-1;Parent=Msa0565660;Name=Msa0565660-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|0|0|1|0|0|9|0|902
chr4_1 exon 66538359 66538603 66538359 ID=Msa0565660-mRNA-1:exon:21675;Parent=Msa0565660-mRNA-1
chr4_1 exon 66538610 66538844 66538610 ID=Msa0565660-mRNA-1:exon:21676;Parent=Msa0565660-mRNA-1
chr4_1 exon 66538851 66539064 66538851 ID=Msa0565660-mRNA-1:exon:21677;Parent=Msa0565660-mRNA-1
chr4_1 exon 66539113 66539282 66539113 ID=Msa0565660-mRNA-1:exon:21678;Parent=Msa0565660-mRNA-1
chr4_1 exon 66539295 66539542 66539295 ID=Msa0565660-mRNA-1:exon:21679;Parent=Msa0565660-mRNA-1
chr4_1 exon 66539573 66539786 66539573 ID=Msa0565660-mRNA-1:exon:21680;Parent=Msa0565660-mRNA-1
chr4_1 exon 66539826 66540056 66539826 ID=Msa0565660-mRNA-1:exon:21681;Parent=Msa0565660-mRNA-1
chr4_1 exon 66540099 66540341 66540099 ID=Msa0565660-mRNA-1:exon:21682;Parent=Msa0565660-mRNA-1
chr4_1 exon 66544935 66545843 66544935 ID=Msa0565660-mRNA-1:exon:21683;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66538359 66538603 66538359 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66538610 66538844 66538610 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66538851 66539064 66538851 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66539113 66539282 66539113 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66539295 66539542 66539295 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66539573 66539786 66539573 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66539826 66540056 66539826 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66540099 66540341 66540099 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
chr4_1 CDS 66544935 66545843 66544935 ID=Msa0565660-mRNA-1:cds;Parent=Msa0565660-mRNA-1
Gene Sequence

>Msa0565660

ATGACAATTGGAAACAAGAGTTCCACAAAGGCAAACAAACTTGATGAATCATCATCACTTGCATTAGTCCATGTTGATGTTGATGATCAACCTCAACCTCTATCTATTGCACCAATTGTATCTTCTTATAATGAGAAGATACGTCCAGTGCTTGATGCTCTTGAAAATCTAAGGCGTCTCAACATTGCTAAAGAGGGAATTCAGCTTCCAACCATTGTTGTTGTTGGAGATCAATCATCTGGAAATGTCCTTGAATCATTAGCTGGTATCAGCTTGCCACGTGGACAAGGAATTTGTACAAGGGTACCTTTGGTTATGAGGCTGCAAAACCATTTACTTCCACAGCCAGAGCTTGTTTTGGAGTACAATGGCAAACAAGTTTCAACTGATGAGGAAAATGTATCTGATGCTATAAACGCAGCCACTGAGGAGCTTGCTGGCACTGCCAAAGGGATTTCCAACACCCCACTGACTTTGATTAAGAATGGTGTTCCTGACCTTACAATGGTTGATCTTCCAGGTATAACTCGTGTTCCTGTACATGGTCAACCTGATAACATTTATGATCAGATTAAGGATATTATCATGGAGTATATAACTCCTGAAGAGAGCATTATCCTCAATGTTCTTTCTGCTACTGTCGATTTTAGTACTTGTGAGTCTATTAGGATGTCACAGATAGTTGATAAAACTGGTTTGTTGGAGAAAGTAACTGCTGATGATGTTAACATTGGTTTGGGCTATGTTTGTGTGAGAAATCGCATCGGGGAGGAATCCTATGAAGAAGCTAGAAATGAAGAACAGAAGTTGTTCGAGTCTCACTCACTTCTTTCTAAGATTGACAAATCCATTGTTGGTATTCCTAAGCTTGTTCATGTGCAAGCTATGATTATTTCAAAAACTTTGCCTGAGATAATTAAGAAGATCAATGAGAAGCTTTATAATAGTGTACATGAGTTGAAGACTTTGCCTGCCAATTTGACTTCATTGGCAGATGCTATGTCTGCTTTTCTGCATATTGTTTCTCTGTCAAGAGATTCTCTGAGAAAGATTCTTCTAATGGGAGAATTTGAAGAATACCCTGATGATAAACAAATGCATTGTACTGCTCGTGATCTTCAAAACTGTGCTGAAAGTGATTCTACAAAGGATTTCCTAATGGAAGAGATCGTAGTCCTTGAGGAAGCTAAGTTAATTGGTCTTCCAAATTTCATGCCAAGAACTGCTTTTCTAACATTACTTCAGAGAAAAGTGAAGGGCATTTCTCATATGCCAACTAATTTTGTTGACAATGTGTGGAGCTATTTGGAAAGGGTTGTTATCTCGGTTGCTACTCGTAGAGCTGTGGAGCACGTTATTGCTAAGAAGAAGAGCAATTCCATTCAACATGTGATGCAAGCTGTTGATATGGAGAAGCACACGGATTACACTTGCAATCCGGAGTACTTGCAGGAATATAACGAGCTGATGTCTCATCAAGAAGCATTTTTGAAAGAAGTTTTGGATGATGCTCGATATCCAAGTACTGTGAAGCTTGAAGGAGTTGATGACATTAAAGCCTTTGACTTGAAGGCAAGATTAATTGCCTATTGGAAGATTGTGCTGAGGAGGCTCATTGATAGTATTGCTTTGCATTTGATGCTAAGCATCAATGAACTGATTAACAATGATCTGCAGAAGGAGATTTGTAATGAACTTGGTGGCAGTGTTGAGAGGCTGCTTGAGGAGTCTCCATCTATTTCTGGTAAGAGACAAAGTTTAAGCAGGAGTGTGAAAGTTCTTAGAGAAAGCAAAGAGACTGAGAGTTCTACAAAAGCTACTAAACGTGATGAATCATCATCACTTGCACTAGTCCATGTTGATGATCAACCTCAATCTCTCACTGTTGCACCCATTATATCTTCATACAATGAAAAAATTCGTCCAGTTCTTGACGCGCTTGAAAATTTAAGGCGCCTGAATATTGCGAAAGAGGGAATCCAACTTCCCACCATTGTTGTTGTTGGTGATCAATCGTCTGGCAAGTCAAGTGTCCTTGAGTCATTAGCTGGTATAAGTTTGCCACGTGGCCAAGGAATTTGCACAAGGGTACCATTGGTTATGAGGCTGCAAAACCACCCACTTCCACAGCCAGAGCTTGTTTTGGAGTATAATGGCAAGCAAGTTTCAACTGATGAGGAAAATGTATCTGATGCTATAAACACAGCCACTGAGGAGCTTGCTGGCACTGCCAAAGGGATTTCCAACACCCCACTGACTTTGATAGTAAAGAAGAATGGAGTTCCTGATCTTACTATGGTTGATCTTCCAGGTATAACTCGTGTTCCTGTTCATGGTCAACCTGATAACATTTATGATCAGATTAAGGATATTATCATGGAGTATATAACTCCTGAAGAGAGTATTATTTTGAATGTTCTCTCTGCTACTGTTGATTTTACTACTTGTGAGTCGATAAGGATCATGTCACAAACTGTTGATAAAACTGGTTTGAGAACGCTTGCTGTCGTGACAAAGGCTGATAAATCTCCTGAAGGTTTGCTGGAGAAGGTTACAGCTGACGATGTTAACATTGGTCTTGGTTATGTTTGTGTAAGGAATCGAATTGGTGAAGAGTCTTACGAAGATGCAAGGAGTGAAGAAGAGAAACTGTTTGAGTGTCACACACTCCTGTTTTGGCTCAAAAGCTTGTTCACGTTCAAGCGATGA
Protein sequence

>Msa0565660

MTIGNKSSTKANKLDESSSLALVHVDVDDQPQPLSIAPIVSSYNEKIRPVLDALENLRRLNIAKEGIQLPTIVVVGDQSSGNVLESLAGISLPRGQGICTRVPLVMRLQNHLLPQPELVLEYNGKQVSTDEENVSDAINAATEELAGTAKGISNTPLTLIKNGVPDLTMVDLPGITRVPVHGQPDNIYDQIKDIIMEYITPEESIILNVLSATVDFSTCESIRMSQIVDKTGLLEKVTADDVNIGLGYVCVRNRIGEESYEEARNEEQKLFESHSLLSKIDKSIVGIPKLVHVQAMIISKTLPEIIKKINEKLYNSVHELKTLPANLTSLADAMSAFLHIVSLSRDSLRKILLMGEFEEYPDDKQMHCTARDLQNCAESDSTKDFLMEEIVVLEEAKLIGLPNFMPRTAFLTLLQRKVKGISHMPTNFVDNVWSYLERVVISVATRRAVEHVIAKKKSNSIQHVMQAVDMEKHTDYTCNPEYLQEYNELMSHQEAFLKEVLDDARYPSTVKLEGVDDIKAFDLKARLIAYWKIVLRRLIDSIALHLMLSINELINNDLQKEICNELGGSVERLLEESPSISGKRQSLSRSVKVLRESKETESSTKATKRDESSSLALVHVDDQPQSLTVAPIISSYNEKIRPVLDALENLRRLNIAKEGIQLPTIVVVGDQSSGKSSVLESLAGISLPRGQGICTRVPLVMRLQNHPLPQPELVLEYNGKQVSTDEENVSDAINTATEELAGTAKGISNTPLTLIVKKNGVPDLTMVDLPGITRVPVHGQPDNIYDQIKDIIMEYITPEESIILNVLSATVDFTTCESIRIMSQTVDKTGLRTLAVVTKADKSPEGLLEKVTADDVNIGLGYVCVRNRIGEESYEDARSEEEKLFECHTLLFWLKSLFTFKR*