Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657440 | PNX76972.1 | 88.262 | 673 | 76 | 3 | 8 | 678 | 2 | 673 | 0.0 | 1206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657440 | sp|Q9ZP55|DRP4C_ARATH | 57.292 | 672 | 278 | 5 | 3 | 671 | 2 | 667 | 0.0 | 779 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0657440 | 0.828106 | 1.080711e-54 | -8.615850e-47 |
| Msa0002580 | Msa0657440 | 0.836540 | 8.815619e-57 | -8.615850e-47 |
| Msa0015150 | Msa0657440 | 0.815527 | 8.830758e-52 | -8.615850e-47 |
| Msa0027280 | Msa0657440 | 0.807853 | 4.126368e-50 | -8.615850e-47 |
| Msa0048510 | Msa0657440 | 0.800587 | 1.344002e-48 | -8.615850e-47 |
| Msa0050660 | Msa0657440 | 0.828882 | 7.020529e-55 | -8.615850e-47 |
| Msa0050700 | Msa0657440 | 0.831622 | 1.503598e-55 | -8.615850e-47 |
| Msa0050790 | Msa0657440 | 0.827371 | 1.623592e-54 | -8.615850e-47 |
| Msa0071850 | Msa0657440 | 0.808456 | 3.070307e-50 | -8.615850e-47 |
| Msa0071860 | Msa0657440 | 0.819196 | 1.318728e-52 | -8.615850e-47 |
| Msa0089460 | Msa0657440 | 0.800891 | 1.164743e-48 | -8.615850e-47 |
| Msa0090400 | Msa0657440 | 0.805168 | 1.520514e-49 | -8.615850e-47 |
| Msa0108880 | Msa0657440 | 0.845198 | 4.717023e-59 | -8.615850e-47 |
| Msa0655700 | Msa0657440 | 0.800082 | 1.702747e-48 | -8.615850e-47 |
| Msa0657440 | Msa0662110 | 0.811542 | 6.644577e-51 | -8.615850e-47 |
| Msa0657440 | Msa0675330 | 0.840956 | 6.363273e-58 | -8.615850e-47 |
| Msa0657440 | Msa0693890 | 0.839965 | 1.155643e-57 | -8.615850e-47 |
| Msa0657440 | Msa0701700 | 0.814592 | 1.424286e-51 | -8.615850e-47 |
| Msa0657440 | Msa0701720 | 0.912675 | 1.483378e-83 | -8.615850e-47 |
| Msa0657440 | Msa0713960 | 0.805478 | 1.309564e-49 | -8.615850e-47 |
| Msa0657440 | Msa0738700 | 0.807774 | 4.289256e-50 | -8.615850e-47 |
| Msa0657440 | Msa0755930 | 0.829860 | 4.064513e-55 | -8.615850e-47 |
| Msa0657440 | Msa0795870 | 0.802944 | 4.411105e-49 | -8.615850e-47 |
| Msa0657440 | Msa0819170 | 0.815401 | 9.419889e-52 | -8.615850e-47 |
| Msa0657440 | Msa0829300 | 0.816043 | 6.775272e-52 | -8.615850e-47 |
| Msa0657440 | Msa0829330 | 0.815196 | 1.046443e-51 | -8.615850e-47 |
| Msa0657440 | Msa0833650 | 0.804937 | 1.699707e-49 | -8.615850e-47 |
| Msa0657440 | Msa0859290 | 0.811488 | 6.827673e-51 | -8.615850e-47 |
| Msa0657440 | Msa0921590 | 0.815803 | 7.665949e-52 | -8.615850e-47 |
| Msa0657440 | Msa1009950 | 0.824216 | 9.102788e-54 | -8.615850e-47 |
| Msa0657440 | Msa1021590 | 0.811035 | 8.560892e-51 | -8.615850e-47 |
| Msa0657440 | Msa1042160 | 0.810421 | 1.162274e-50 | -8.615850e-47 |
| Msa0657440 | Msa1042190 | 0.808366 | 3.207985e-50 | -8.615850e-47 |
| Msa0657440 | Msa1044680 | 0.812350 | 4.432475e-51 | -8.615850e-47 |
| Msa0657440 | Msa1078820 | 0.854199 | 1.443212e-61 | -8.615850e-47 |
| Msa0657440 | Msa1105640 | 0.834927 | 2.258564e-56 | -8.615850e-47 |
| Msa0657440 | Msa1123970 | 0.852822 | 3.586552e-61 | -8.615850e-47 |
| Msa0657440 | Msa1128130 | 0.800176 | 1.629847e-48 | -8.615850e-47 |
| Msa0657440 | Msa1132840 | 0.806328 | 8.675401e-50 | -8.615850e-47 |
| Msa0657440 | Msa1148960 | 0.815013 | 1.149034e-51 | -8.615850e-47 |
| Msa0657440 | Msa1167470 | 0.801589 | 8.382972e-49 | -8.615850e-47 |
| Msa0657440 | Msa1169650 | 0.848369 | 6.404435e-60 | -8.615850e-47 |
| Msa0657440 | Msa1223570 | 0.831126 | 1.992015e-55 | -8.615850e-47 |
| Msa0657440 | Msa1263490 | 0.808470 | 3.049146e-50 | -8.615850e-47 |
| Msa0657440 | Msa1265650 | 0.837580 | 4.780168e-57 | -8.615850e-47 |
| Msa0657440 | Msa1268630 | 0.821967 | 3.046027e-53 | -8.615850e-47 |
| Msa0657440 | Msa1303560 | 0.841944 | 3.495027e-58 | -8.615850e-47 |
| Msa0657440 | Msa1303650 | 0.843652 | 1.228622e-58 | -8.615850e-47 |
| Msa0657440 | Msa1372040 | 0.826457 | 2.684437e-54 | -8.615850e-47 |
| Msa0657440 | Msa1384460 | 0.817807 | 2.723067e-52 | -8.615850e-47 |
| Msa0657440 | Msa1387620 | 0.812077 | 5.083616e-51 | -8.615850e-47 |
| Msa0657440 | Msa1393780 | 0.804012 | 2.649704e-49 | -8.615850e-47 |
| Msa0657440 | Msa1405460 | 0.827892 | 1.217326e-54 | -8.615850e-47 |
| Msa0657440 | Msa1415540 | 0.809910 | 1.498068e-50 | -8.615850e-47 |
| Msa0657440 | Msa1427100 | 0.804837 | 1.783394e-49 | -8.615850e-47 |
| Msa0657440 | Msa1433790 | 0.966236 | 1.185901e-125 | -8.615850e-47 |
| Msa0657440 | Msa1433810 | 0.837156 | 6.137933e-57 | -8.615850e-47 |
| Msa0657440 | Msa1440630 | 0.827084 | 1.901852e-54 | -8.615850e-47 |
| Msa0125210 | Msa0657440 | 0.809498 | 1.836438e-50 | -8.615850e-47 |
| Msa0132630 | Msa0657440 | -0.807314 | 5.369592e-50 | -8.615850e-47 |
| Msa0188610 | Msa0657440 | 0.881181 | 2.969877e-70 | -8.615850e-47 |
| Msa0230800 | Msa0657440 | 0.838707 | 2.450580e-57 | -8.615850e-47 |
| Msa0230870 | Msa0657440 | 0.845361 | 4.260036e-59 | -8.615850e-47 |
| Msa0369790 | Msa0657440 | 0.819451 | 1.153751e-52 | -8.615850e-47 |
| Msa0405680 | Msa0657440 | 0.845117 | 4.959166e-59 | -8.615850e-47 |
| Msa0418970 | Msa0657440 | 0.835698 | 1.441830e-56 | -8.615850e-47 |
| Msa0435210 | Msa0657440 | 0.816955 | 4.233890e-52 | -8.615850e-47 |
| Msa0436910 | Msa0657440 | 0.841283 | 5.220842e-58 | -8.615850e-47 |
| Msa0460550 | Msa0657440 | 0.808241 | 3.412382e-50 | -8.615850e-47 |
| Msa0464000 | Msa0657440 | 0.818993 | 1.466274e-52 | -8.615850e-47 |
| Msa0472950 | Msa0657440 | 0.827516 | 1.498562e-54 | -8.615850e-47 |
| Msa0479320 | Msa0657440 | 0.810065 | 1.387314e-50 | -8.615850e-47 |
| Msa0244640 | Msa0657440 | 0.825549 | 4.411707e-54 | -8.615850e-47 |
| Msa0270340 | Msa0657440 | 0.868742 | 5.208690e-66 | -8.615850e-47 |
| Msa0509550 | Msa0657440 | 0.811664 | 6.250766e-51 | -8.615850e-47 |
| Msa0517250 | Msa0657440 | 0.807526 | 4.842453e-50 | -8.615850e-47 |
| Msa0519750 | Msa0657440 | 0.800224 | 1.593294e-48 | -8.615850e-47 |
| Msa0528570 | Msa0657440 | 0.821219 | 4.536635e-53 | -8.615850e-47 |
| Msa0529030 | Msa0657440 | 0.832318 | 1.011992e-55 | -8.615850e-47 |
| Msa0530780 | Msa0657440 | 0.815221 | 1.033140e-51 | -8.615850e-47 |
| Msa0541300 | Msa0657440 | 0.844762 | 6.185611e-59 | -8.615850e-47 |
| Msa0541310 | Msa0657440 | 0.845264 | 4.525778e-59 | -8.615850e-47 |
| Msa0557460 | Msa0657440 | 0.809208 | 2.119349e-50 | -8.615850e-47 |
| Msa0562560 | Msa0657440 | 0.822512 | 2.276990e-53 | -8.615850e-47 |
| Msa0565640 | Msa0657440 | 0.922170 | 1.391796e-88 | -8.615850e-47 |
| Msa0565660 | Msa0657440 | 0.824775 | 6.721948e-54 | -8.615850e-47 |
| Msa0580370 | Msa0657440 | 0.810342 | 1.209211e-50 | -8.615850e-47 |
| Msa0585020 | Msa0657440 | 0.839545 | 1.486297e-57 | -8.615850e-47 |
| Msa0597270 | Msa0657440 | 0.842935 | 1.907485e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657440 | MtrunA17_Chr8g0379961 | 86.303 | 679 | 87 | 3 | 1 | 678 | 1 | 674 | 0.0 | 1192 |
| Msa0657440 | MtrunA17_Chr8g0379941 | 82.712 | 671 | 111 | 3 | 6 | 675 | 11 | 677 | 0.0 | 1129 |
| Msa0657440 | MtrunA17_Chr8g0379951 | 92.000 | 125 | 10 | 0 | 439 | 563 | 1 | 125 | 3.83e-77 | 242 |
| Msa0657440 | MtrunA17_Chr4g0049731 | 34.577 | 402 | 236 | 13 | 67 | 452 | 35 | 425 | 5.99e-43 | 166 |
| Msa0657440 | MtrunA17_Chr2g0279671 | 37.580 | 314 | 184 | 6 | 63 | 366 | 40 | 351 | 1.33e-41 | 162 |
| Msa0657440 | MtrunA17_Chr5g0396561 | 30.128 | 468 | 291 | 15 | 69 | 518 | 35 | 484 | 2.18e-34 | 139 |
| Msa0657440 | MtrunA17_Chr8g0391891 | 35.461 | 282 | 163 | 6 | 69 | 337 | 35 | 310 | 8.28e-33 | 134 |
| Msa0657440 | MtrunA17_Chr8g0388271 | 33.956 | 321 | 178 | 10 | 69 | 369 | 34 | 340 | 6.95e-32 | 131 |
| Msa0657440 | MtrunA17_Chr7g0233071 | 34.700 | 317 | 181 | 9 | 69 | 369 | 40 | 346 | 7.42e-32 | 131 |
| Msa0657440 | MtrunA17_Chr8g0337041 | 35.220 | 318 | 178 | 10 | 69 | 369 | 40 | 346 | 9.68e-32 | 131 |
| Msa0657440 | MtrunA17_Chr4g0055051 | 34.375 | 320 | 178 | 11 | 69 | 369 | 34 | 340 | 4.99e-31 | 128 |
| Msa0657440 | MtrunA17_Chr8g0346971 | 39.904 | 208 | 105 | 6 | 69 | 264 | 34 | 233 | 2.45e-28 | 120 |
| Msa0657440 | MtrunA17_Chr8g0360401 | 29.258 | 229 | 147 | 5 | 54 | 269 | 27 | 253 | 6.58e-16 | 82.0 |
| Msa0657440 | MtrunA17_Chr1g0161401 | 29.302 | 215 | 132 | 6 | 167 | 369 | 5 | 211 | 2.14e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657440 | AT1G60500.1 | 57.292 | 672 | 278 | 5 | 3 | 671 | 2 | 667 | 0.0 | 779 |
| Msa0657440 | AT1G60530.1 | 72.069 | 290 | 73 | 1 | 18 | 307 | 19 | 300 | 4.48e-144 | 422 |
| Msa0657440 | AT2G14120.4 | 30.180 | 444 | 287 | 10 | 25 | 452 | 1 | 437 | 5.87e-40 | 157 |
| Msa0657440 | AT2G14120.2 | 30.180 | 444 | 287 | 10 | 25 | 452 | 1 | 437 | 8.80e-40 | 157 |
| Msa0657440 | AT2G14120.1 | 30.180 | 444 | 287 | 10 | 25 | 452 | 1 | 437 | 9.65e-40 | 157 |
| Msa0657440 | AT2G14120.3 | 34.125 | 337 | 204 | 6 | 25 | 346 | 1 | 334 | 1.13e-39 | 156 |
| Msa0657440 | AT4G33650.1 | 29.797 | 443 | 267 | 11 | 35 | 452 | 29 | 452 | 2.05e-39 | 155 |
| Msa0657440 | AT4G33650.2 | 29.797 | 443 | 267 | 11 | 35 | 452 | 29 | 452 | 2.10e-39 | 155 |
| Msa0657440 | AT1G14830.1 | 32.903 | 310 | 196 | 6 | 69 | 369 | 35 | 341 | 8.07e-34 | 137 |
| Msa0657440 | AT5G42080.4 | 30.258 | 466 | 293 | 13 | 69 | 518 | 34 | 483 | 6.88e-33 | 134 |
| Msa0657440 | AT5G42080.1 | 30.258 | 466 | 293 | 13 | 69 | 518 | 34 | 483 | 6.88e-33 | 134 |
| Msa0657440 | AT2G44590.3 | 24.307 | 613 | 406 | 19 | 69 | 665 | 35 | 605 | 8.77e-33 | 134 |
| Msa0657440 | AT3G60190.1 | 33.232 | 328 | 199 | 9 | 69 | 386 | 40 | 357 | 1.31e-32 | 134 |
| Msa0657440 | AT5G42080.2 | 34.505 | 313 | 187 | 8 | 69 | 369 | 34 | 340 | 4.68e-32 | 129 |
| Msa0657440 | AT5G42080.3 | 34.505 | 313 | 187 | 8 | 69 | 369 | 34 | 340 | 1.23e-31 | 130 |
| Msa0657440 | AT3G61760.3 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 4.54e-30 | 124 |
| Msa0657440 | AT3G61760.1 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 4.96e-30 | 126 |
| Msa0657440 | AT3G61760.2 | 34.472 | 322 | 175 | 12 | 69 | 369 | 34 | 340 | 6.04e-30 | 125 |
| Msa0657440 | AT2G44590.2 | 22.838 | 613 | 398 | 20 | 69 | 665 | 35 | 588 | 4.75e-23 | 104 |
| Msa0657440 | AT2G44590.1 | 28.875 | 329 | 195 | 10 | 69 | 386 | 35 | 335 | 3.11e-22 | 102 |
| Msa0657440 | AT1G53140.1 | 27.119 | 236 | 160 | 5 | 44 | 269 | 36 | 269 | 9.80e-15 | 78.6 |
Find 125 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTTTCAACAAAATTAAT+TGG | 0.173861 | 4_3:+67093577 | None:intergenic |
| CTTGAGGAAGCCAAATTTAT+TGG | 0.191059 | 4_3:-67093673 | Msa0657440:CDS |
| ATTCGGAAGACCAATAAATT+TGG | 0.194065 | 4_3:+67093663 | None:intergenic |
| ATGGACAGGATTGGAAATTA+TGG | 0.215755 | 4_3:-67092947 | Msa0657440:CDS |
| ATCAAGTTTGTTTGCCTTTG+TGG | 0.244719 | 4_3:+67094929 | None:intergenic |
| TATTGTTGGAATTCCTGTTT+TGG | 0.276334 | 4_3:-67094043 | Msa0657440:CDS |
| GAGGAGTCTCCTTCAATATC+AGG | 0.303692 | 4_3:-67093037 | Msa0657440:CDS |
| ATCTGATCATAAATGTTATC+AGG | 0.304162 | 4_3:+67094390 | None:intergenic |
| AGGCCAGATTGACAGCTTAT+TGG | 0.313028 | 4_3:-67093201 | Msa0657440:CDS |
| TTCTAACTATTATCAGCTTC+AGG | 0.313313 | 4_3:-67093506 | Msa0657440:CDS |
| GAACTTTGATTTCCTCCATT+AGG | 0.316135 | 4_3:+67093695 | None:intergenic |
| TAACATTTATGATCAGATTA+AGG | 0.317964 | 4_3:-67094385 | Msa0657440:CDS |
| CTTCCAACCATTGTTGTTGT+TGG | 0.322456 | 4_3:-67094747 | Msa0657440:CDS |
| AGAGACCGTGGCCAACATTA+TGG | 0.325375 | 4_3:-67092966 | Msa0657440:CDS |
| TCACAAACTGTTGATAAAAC+TGG | 0.334047 | 4_3:-67094267 | Msa0657440:CDS |
| TCCACAGCCAGAGCTTGTTT+TGG | 0.338480 | 4_3:-67094607 | Msa0657440:CDS |
| CCTTACTTCAGAGAAAAGTT+AGG | 0.351453 | 4_3:-67093615 | Msa0657440:CDS |
| TGAAAGTGTATGGAATTATC+TGG | 0.352378 | 4_3:-67093563 | Msa0657440:CDS |
| CTTACTATGGTTGATCTTCC+AGG | 0.352429 | 4_3:-67094441 | Msa0657440:CDS |
| TAAGAAGATTAATGAGAAAC+TGG | 0.360082 | 4_3:-67093962 | Msa0657440:CDS |
| CAAGGGTACCTTTGGTTATG+AGG | 0.366182 | 4_3:-67094647 | Msa0657440:CDS |
| TGGACAGGATTGGAAATTAT+GGG | 0.366857 | 4_3:-67092946 | Msa0657440:CDS |
| CACATGTAACCCTGAGTACT+TGG | 0.369075 | 4_3:-67093383 | Msa0657440:CDS |
| GCAGTTCTTGGCATGAAATT+CGG | 0.376721 | 4_3:+67093646 | None:intergenic |
| GCCTGCTAATTTATCCTCAC+TGG | 0.379029 | 4_3:-67093911 | Msa0657440:CDS |
| TGGAGTTCCTGATCTTACTA+TGG | 0.379945 | 4_3:-67094454 | Msa0657440:CDS |
| GCAGCCACTGAGGAGCTTGC+TGG | 0.382789 | 4_3:-67094528 | Msa0657440:CDS |
| CTCCATTAGGAAATCCTTAG+TGG | 0.385218 | 4_3:+67093708 | None:intergenic |
| TAAATCTCCTGAAGGTTTGC+TGG | 0.387244 | 4_3:-67094211 | Msa0657440:CDS |
| TTCAAAATAATACTCTCTTC+AGG | 0.392099 | 4_3:+67094339 | None:intergenic |
| GCTCTGGCTGTGGAAGTAAA+TGG | 0.394731 | 4_3:+67094616 | None:intergenic |
| AACAATAGATTTGTCTATCC+TGG | 0.395168 | 4_3:+67094059 | None:intergenic |
| ATAACTCGTGTTCCTGTTCA+TGG | 0.396246 | 4_3:-67094417 | Msa0657440:CDS |
| ACCTTCTCCAGCAAACCTTC+AGG | 0.399453 | 4_3:+67094204 | None:intergenic |
| TTTCCAATAAGCTGTCAATC+TGG | 0.399717 | 4_3:+67093198 | None:intergenic |
| TTACTACTTGTGAGTCGATA+AGG | 0.405010 | 4_3:-67094293 | Msa0657440:CDS |
| TGTCTCTTCCCTGATATTGA+AGG | 0.410432 | 4_3:+67093028 | None:intergenic |
| TTAATCTTCTTAATGATCTC+TGG | 0.413053 | 4_3:+67093973 | None:intergenic |
| GACGATGTTAACATTGGTCT+TGG | 0.414913 | 4_3:-67094174 | Msa0657440:CDS |
| TTGATGCTCTTGAAAATCTA+AGG | 0.416842 | 4_3:-67094800 | Msa0657440:CDS |
| AATTTGTACAAGGGTACCTT+TGG | 0.424069 | 4_3:-67094655 | Msa0657440:CDS |
| AAGGTCAGAAAAGCAGTTCT+TGG | 0.424321 | 4_3:+67093634 | None:intergenic |
| GTCTTGGTTATGTTTGTGTA+AGG | 0.435750 | 4_3:-67094158 | Msa0657440:CDS |
| ATATCCACACATGTTGAATC+AGG | 0.440980 | 4_3:-67093236 | Msa0657440:CDS |
| TGGGGTGTTGGAAATCCCTT+TGG | 0.443439 | 4_3:+67094500 | None:intergenic |
| CTTACTTCAGAGAAAAGTTA+GGG | 0.447328 | 4_3:-67093614 | Msa0657440:CDS |
| GGCTACTAGTTTGCATGAGC+TGG | 0.448592 | 4_3:-67093941 | Msa0657440:CDS |
| AGGATAGACAAATCTATTGT+TGG | 0.453655 | 4_3:-67094057 | Msa0657440:CDS |
| TCATTATAAGAAGATACAAT+TGG | 0.458646 | 4_3:+67094840 | None:intergenic |
| GGAAGAGACAGAAGTTGAGC+AGG | 0.460748 | 4_3:-67093015 | Msa0657440:CDS |
| GAATCAGGCTTATGATTTGA+AGG | 0.463037 | 4_3:-67093221 | Msa0657440:CDS |
| ACAATTGGTGCAACAGATAG+AGG | 0.467988 | 4_3:+67094855 | None:intergenic |
| TCTTTACTATCAAAGTCAGT+GGG | 0.470875 | 4_3:+67094481 | None:intergenic |
| TTATACTCCTCCAAGTACTC+AGG | 0.473801 | 4_3:+67093373 | None:intergenic |
| TGATACCAGCTAATGATTCA+AGG | 0.474056 | 4_3:+67094697 | None:intergenic |
| GAGCTTGCTGGCACTGCCAA+AGG | 0.478600 | 4_3:-67094516 | Msa0657440:CDS |
| TCCTGAAGGTTTGCTGGAGA+AGG | 0.484851 | 4_3:-67094205 | Msa0657440:CDS |
| GTTGTTGGAGATCAATCATC+TGG | 0.485196 | 4_3:-67094732 | Msa0657440:CDS |
| AGCTTGAAGCACATGCTGAA+TGG | 0.486139 | 4_3:+67093432 | None:intergenic |
| TTATACTCCAAAACAAGCTC+TGG | 0.492061 | 4_3:+67094600 | None:intergenic |
| TATCAAAGTCAGTGGGGTGT+TGG | 0.492352 | 4_3:+67094488 | None:intergenic |
| TCCAATCCTGTCCATAATGT+TGG | 0.494024 | 4_3:+67092955 | None:intergenic |
| TTATCAGGTTGACCATGAAC+AGG | 0.495576 | 4_3:+67094405 | None:intergenic |
| GCGTCTCAACATTGCTAAAG+AGG | 0.501157 | 4_3:-67094778 | Msa0657440:CDS |
| TGCCACTAAGGATTTCCTAA+TGG | 0.506730 | 4_3:-67093710 | Msa0657440:CDS |
| TGTGTGGATATTTCATAAGC+TGG | 0.507052 | 4_3:+67093248 | None:intergenic |
| GTTTGTGTAAGGAATCGAAT+TGG | 0.512590 | 4_3:-67094147 | Msa0657440:CDS |
| CTTATTGGAAAATTGTGCTC+CGG | 0.520290 | 4_3:-67093186 | Msa0657440:CDS |
| GCCAGTGAGGATAAATTAGC+AGG | 0.522213 | 4_3:+67093910 | None:intergenic |
| AGATCAACCATAGTAAGATC+AGG | 0.522883 | 4_3:+67094447 | None:intergenic |
| AGTGTCCTTGAATCATTAGC+TGG | 0.523168 | 4_3:-67094702 | Msa0657440:CDS |
| TCCAAAACAAGCTCTGGCTG+TGG | 0.524796 | 4_3:+67094606 | None:intergenic |
| GGTGCAACAGATAGAGGTTG+AGG | 0.525331 | 4_3:+67094861 | None:intergenic |
| TGTTGAAAGTAATGCCACTA+AGG | 0.528407 | 4_3:-67093722 | Msa0657440:CDS |
| GCCAACATTATGGACAGGAT+TGG | 0.530993 | 4_3:-67092956 | Msa0657440:CDS |
| AATGAACTGTTATCAGCAAA+TGG | 0.537861 | 4_3:-67093082 | Msa0657440:CDS |
| ATCAGCTTGCCACGTGGACA+AGG | 0.540401 | 4_3:-67094678 | Msa0657440:CDS |
| TCAGATTAAGGATATTATCA+TGG | 0.543580 | 4_3:-67094373 | Msa0657440:CDS |
| GGAGGAAATCAAAGTTCTTG+AGG | 0.547046 | 4_3:-67093689 | Msa0657440:CDS |
| AGCTTGCTGGCACTGCCAAA+GGG | 0.547647 | 4_3:-67094515 | Msa0657440:CDS |
| TCTCCAACAACAACAATGGT+TGG | 0.551269 | 4_3:+67094744 | None:intergenic |
| TGTGAATGTTGATCTGCAAA+AGG | 0.555960 | 4_3:-67093113 | Msa0657440:CDS |
| AGTGTCACACACTTCTGTCC+AGG | 0.565122 | 4_3:-67094077 | Msa0657440:CDS |
| ACTTTGATAGTAAAGAAGAA+TGG | 0.569006 | 4_3:-67094474 | Msa0657440:CDS |
| TCAAGTACTGTGAAGCTGAA+AGG | 0.569995 | 4_3:-67093292 | Msa0657440:CDS |
| CACTAAGGATTTCCTAATGG+AGG | 0.576778 | 4_3:-67093707 | Msa0657440:CDS |
| AGTGCCAGCAAGCTCCTCAG+TGG | 0.578957 | 4_3:+67094524 | None:intergenic |
| TTCTTTACTATCAAAGTCAG+TGG | 0.579933 | 4_3:+67094480 | None:intergenic |
| TATACTCCTCCAAGTACTCA+GGG | 0.581284 | 4_3:+67093374 | None:intergenic |
| CCGTGGCCAACATTATGGAC+AGG | 0.581354 | 4_3:-67092961 | Msa0657440:CDS |
| TGAAAAGAAAATGCATTGCA+CGG | 0.584106 | 4_3:-67093794 | Msa0657440:CDS |
| CAATCACATCAATTAACCTC+CGG | 0.585742 | 4_3:+67093167 | None:intergenic |
| CGTCTCAACATTGCTAAAGA+GGG | 0.585949 | 4_3:-67094777 | Msa0657440:CDS |
| AGGAGTCTCCTTCAATATCA+GGG | 0.586223 | 4_3:-67093036 | Msa0657440:CDS |
| ATGTAACCCTGAGTACTTGG+AGG | 0.589927 | 4_3:-67093380 | Msa0657440:CDS |
| CCTGTCCATAATGTTGGCCA+CGG | 0.590976 | 4_3:+67092961 | None:intergenic |
| GTGGACAAGGAATTTGTACA+AGG | 0.592993 | 4_3:-67094665 | Msa0657440:CDS |
| GGACAGGATTGGAAATTATG+GGG | 0.597404 | 4_3:-67092945 | Msa0657440:CDS |
| AAGGCTGATAAATCTCCTGA+AGG | 0.599516 | 4_3:-67094219 | Msa0657440:CDS |
| CAAACAACTTTCAACTGATG+AGG | 0.601066 | 4_3:-67094574 | Msa0657440:CDS |
| AACGCTTGCTGTCGTGACAA+AGG | 0.611997 | 4_3:-67094238 | Msa0657440:CDS |
| ACAGGAACACGAGTTATACC+TGG | 0.615115 | 4_3:+67094423 | None:intergenic |
| TGGTGTTGAGAGGCTGCTTG+AGG | 0.618613 | 4_3:-67093056 | Msa0657440:CDS |
| TGTGCTTCAAGCTGTTGAGA+TGG | 0.619725 | 4_3:-67093422 | Msa0657440:CDS |
| TAAGCCTGATTCAACATGTG+TGG | 0.620737 | 4_3:+67093232 | None:intergenic |
| ATTGGAAAATTGTGCTCCGG+AGG | 0.621567 | 4_3:-67093183 | Msa0657440:CDS |
| GGAGGAGTATAACAAGCTGA+TGG | 0.621625 | 4_3:-67093362 | Msa0657440:CDS |
| TGCTATAAACGCAGCCACTG+AGG | 0.623567 | 4_3:-67094538 | Msa0657440:CDS |
| ACAGCTGACGATGTTAACAT+TGG | 0.623909 | 4_3:-67094180 | Msa0657440:CDS |
| AAGAGTCTTACGAAGATGCA+AGG | 0.624326 | 4_3:-67094122 | Msa0657440:CDS |
| GATTTGCAGAAAAGCAGACA+TGG | 0.624535 | 4_3:+67093882 | None:intergenic |
| CTGTTATCAGCAAATGGTGG+TGG | 0.626367 | 4_3:-67093076 | Msa0657440:CDS |
| CAAATGGTGGTGGTGTTGAG+AGG | 0.637671 | 4_3:-67093066 | Msa0657440:CDS |
| ACTGTGAAGCTGAAAGGTGT+TGG | 0.640769 | 4_3:-67093286 | Msa0657440:CDS |
| GAAAGAAAGCAAAGAGACCG+TGG | 0.645229 | 4_3:-67092978 | Msa0657440:CDS |
| TTGATCTCCAACAACAACAA+TGG | 0.648908 | 4_3:+67094740 | None:intergenic |
| GTACAAATTCCTTGTCCACG+TGG | 0.660130 | 4_3:+67094669 | None:intergenic |
| AGACATGGCATCAGCCAGTG+AGG | 0.673951 | 4_3:+67093897 | None:intergenic |
| CTTTACTATCAAAGTCAGTG+GGG | 0.697240 | 4_3:+67094482 | None:intergenic |
| GCTGGTATCAGCTTGCCACG+TGG | 0.699523 | 4_3:-67094684 | Msa0657440:CDS |
| GTTGATCATCAACATCAACA+TGG | 0.706155 | 4_3:+67094883 | None:intergenic |
| TGGAAACAAGAGTTCCACAA+AGG | 0.707464 | 4_3:-67094943 | Msa0657440:CDS |
| TTACTTCAGAGAAAAGTTAG+GGG | 0.725881 | 4_3:-67093613 | Msa0657440:CDS |
| TGGACAAGGAATTTGTACAA+GGG | 0.728664 | 4_3:-67094664 | Msa0657440:CDS |
| GAACTGTTATCAGCAAATGG+TGG | 0.747464 | 4_3:-67093079 | Msa0657440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATAAGAAGATACAAT+TGG | + | chr4_3:67093051-67093070 | None:intergenic | 20.0% |
| !! | TAACATTTATGATCAGATTA+AGG | - | chr4_3:67093503-67093522 | Msa0657440:CDS | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | - | chr4_3:67094050-67094069 | Msa0657440:CDS | 20.0% |
| !! | ACACTTTCAACAAAATTAAT+TGG | + | chr4_3:67094314-67094333 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | - | chr4_3:67094315-67094334 | Msa0657440:CDS | 20.0% |
| !! | TCATTATAAGAAGATACAAT+TGG | + | chr4_3:67093051-67093070 | None:intergenic | 20.0% |
| !! | TAACATTTATGATCAGATTA+AGG | - | chr4_3:67093503-67093522 | Msa0657440:CDS | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | - | chr4_3:67094050-67094069 | Msa0657440:CDS | 20.0% |
| !! | ACACTTTCAACAAAATTAAT+TGG | + | chr4_3:67094314-67094333 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | - | chr4_3:67094315-67094334 | Msa0657440:CDS | 20.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | - | chr4_3:67093414-67093433 | Msa0657440:CDS | 25.0% |
| ! | ATCTGATCATAAATGTTATC+AGG | + | chr4_3:67093501-67093520 | None:intergenic | 25.0% |
| ! | TCAGATTAAGGATATTATCA+TGG | - | chr4_3:67093515-67093534 | Msa0657440:CDS | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | + | chr4_3:67093552-67093571 | None:intergenic | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | + | chr4_3:67093918-67093937 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | - | chr4_3:67093926-67093945 | Msa0657440:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | + | chr4_3:67094433-67094452 | None:intergenic | 25.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | - | chr4_3:67093414-67093433 | Msa0657440:CDS | 25.0% |
| ! | ATCTGATCATAAATGTTATC+AGG | + | chr4_3:67093501-67093520 | None:intergenic | 25.0% |
| ! | TCAGATTAAGGATATTATCA+TGG | - | chr4_3:67093515-67093534 | Msa0657440:CDS | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | + | chr4_3:67093552-67093571 | None:intergenic | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | + | chr4_3:67093918-67093937 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | - | chr4_3:67093926-67093945 | Msa0657440:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | + | chr4_3:67094433-67094452 | None:intergenic | 25.0% |
| TTGATGCTCTTGAAAATCTA+AGG | - | chr4_3:67093088-67093107 | Msa0657440:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | + | chr4_3:67093410-67093429 | None:intergenic | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | + | chr4_3:67093411-67093430 | None:intergenic | 30.0% | |
| ! | TCACAAACTGTTGATAAAAC+TGG | - | chr4_3:67093621-67093640 | Msa0657440:CDS | 30.0% |
| AACAATAGATTTGTCTATCC+TGG | + | chr4_3:67093832-67093851 | None:intergenic | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | - | chr4_3:67093831-67093850 | Msa0657440:CDS | 30.0% | |
| ! | TATTGTTGGAATTCCTGTTT+TGG | - | chr4_3:67093845-67093864 | Msa0657440:CDS | 30.0% |
| TGAAAAGAAAATGCATTGCA+CGG | - | chr4_3:67094094-67094113 | Msa0657440:CDS | 30.0% | |
| ATTCGGAAGACCAATAAATT+TGG | + | chr4_3:67094228-67094247 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | - | chr4_3:67094274-67094293 | Msa0657440:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | - | chr4_3:67094275-67094294 | Msa0657440:CDS | 30.0% | |
| ! | TGAAAGTGTATGGAATTATC+TGG | - | chr4_3:67094325-67094344 | Msa0657440:CDS | 30.0% |
| TTCTAACTATTATCAGCTTC+AGG | - | chr4_3:67094382-67094401 | Msa0657440:CDS | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | - | chr4_3:67094806-67094825 | Msa0657440:CDS | 30.0% | |
| TTGATGCTCTTGAAAATCTA+AGG | - | chr4_3:67093088-67093107 | Msa0657440:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | + | chr4_3:67093410-67093429 | None:intergenic | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | + | chr4_3:67093411-67093430 | None:intergenic | 30.0% | |
| ! | TCACAAACTGTTGATAAAAC+TGG | - | chr4_3:67093621-67093640 | Msa0657440:CDS | 30.0% |
| AACAATAGATTTGTCTATCC+TGG | + | chr4_3:67093832-67093851 | None:intergenic | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | - | chr4_3:67093831-67093850 | Msa0657440:CDS | 30.0% | |
| ! | TATTGTTGGAATTCCTGTTT+TGG | - | chr4_3:67093845-67093864 | Msa0657440:CDS | 30.0% |
| TGAAAAGAAAATGCATTGCA+CGG | - | chr4_3:67094094-67094113 | Msa0657440:CDS | 30.0% | |
| ATTCGGAAGACCAATAAATT+TGG | + | chr4_3:67094228-67094247 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | - | chr4_3:67094274-67094293 | Msa0657440:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | - | chr4_3:67094275-67094294 | Msa0657440:CDS | 30.0% | |
| ! | TGAAAGTGTATGGAATTATC+TGG | - | chr4_3:67094325-67094344 | Msa0657440:CDS | 30.0% |
| TTCTAACTATTATCAGCTTC+AGG | - | chr4_3:67094382-67094401 | Msa0657440:CDS | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | - | chr4_3:67094806-67094825 | Msa0657440:CDS | 30.0% | |
| ! | ATCAAGTTTGTTTGCCTTTG+TGG | + | chr4_3:67092962-67092981 | None:intergenic | 35.0% |
| GTTGATCATCAACATCAACA+TGG | + | chr4_3:67093008-67093027 | None:intergenic | 35.0% | |
| TTGATCTCCAACAACAACAA+TGG | + | chr4_3:67093151-67093170 | None:intergenic | 35.0% | |
| TGATACCAGCTAATGATTCA+AGG | + | chr4_3:67093194-67093213 | None:intergenic | 35.0% | |
| TGGACAAGGAATTTGTACAA+GGG | - | chr4_3:67093224-67093243 | Msa0657440:CDS | 35.0% | |
| !! | AATTTGTACAAGGGTACCTT+TGG | - | chr4_3:67093233-67093252 | Msa0657440:CDS | 35.0% |
| TTATACTCCAAAACAAGCTC+TGG | + | chr4_3:67093291-67093310 | None:intergenic | 35.0% | |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | - | chr4_3:67093291-67093310 | Msa0657440:CDS | 35.0% |
| CAAACAACTTTCAACTGATG+AGG | - | chr4_3:67093314-67093333 | Msa0657440:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | + | chr4_3:67093409-67093428 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | + | chr4_3:67093444-67093463 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | - | chr4_3:67093595-67093614 | Msa0657440:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | - | chr4_3:67093730-67093749 | Msa0657440:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | - | chr4_3:67093741-67093760 | Msa0657440:CDS | 35.0% | |
| TGTTGAAAGTAATGCCACTA+AGG | - | chr4_3:67094166-67094185 | Msa0657440:CDS | 35.0% | |
| ! | GAACTTTGATTTCCTCCATT+AGG | + | chr4_3:67094196-67094215 | None:intergenic | 35.0% |
| CTTGAGGAAGCCAAATTTAT+TGG | - | chr4_3:67094215-67094234 | Msa0657440:CDS | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | + | chr4_3:67094276-67094295 | None:intergenic | 35.0% |
| CCTTACTTCAGAGAAAAGTT+AGG | - | chr4_3:67094273-67094292 | Msa0657440:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | + | chr4_3:67094643-67094662 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | - | chr4_3:67094652-67094671 | Msa0657440:CDS | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | - | chr4_3:67094667-67094686 | Msa0657440:CDS | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | + | chr4_3:67094693-67094712 | None:intergenic | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | - | chr4_3:67094702-67094721 | Msa0657440:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | + | chr4_3:67094724-67094743 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | - | chr4_3:67094775-67094794 | Msa0657440:CDS | 35.0% | |
| ATGGACAGGATTGGAAATTA+TGG | - | chr4_3:67094941-67094960 | Msa0657440:CDS | 35.0% | |
| TGGACAGGATTGGAAATTAT+GGG | - | chr4_3:67094942-67094961 | Msa0657440:CDS | 35.0% | |
| ! | ATCAAGTTTGTTTGCCTTTG+TGG | + | chr4_3:67092962-67092981 | None:intergenic | 35.0% |
| GTTGATCATCAACATCAACA+TGG | + | chr4_3:67093008-67093027 | None:intergenic | 35.0% | |
| TTGATCTCCAACAACAACAA+TGG | + | chr4_3:67093151-67093170 | None:intergenic | 35.0% | |
| TGATACCAGCTAATGATTCA+AGG | + | chr4_3:67093194-67093213 | None:intergenic | 35.0% | |
| TGGACAAGGAATTTGTACAA+GGG | - | chr4_3:67093224-67093243 | Msa0657440:CDS | 35.0% | |
| !! | AATTTGTACAAGGGTACCTT+TGG | - | chr4_3:67093233-67093252 | Msa0657440:CDS | 35.0% |
| TTATACTCCAAAACAAGCTC+TGG | + | chr4_3:67093291-67093310 | None:intergenic | 35.0% | |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | - | chr4_3:67093291-67093310 | Msa0657440:CDS | 35.0% |
| CAAACAACTTTCAACTGATG+AGG | - | chr4_3:67093314-67093333 | Msa0657440:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | + | chr4_3:67093409-67093428 | None:intergenic | 35.0% | |
| AGATCAACCATAGTAAGATC+AGG | + | chr4_3:67093444-67093463 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | - | chr4_3:67093595-67093614 | Msa0657440:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | - | chr4_3:67093730-67093749 | Msa0657440:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | - | chr4_3:67093741-67093760 | Msa0657440:CDS | 35.0% | |
| TGTTGAAAGTAATGCCACTA+AGG | - | chr4_3:67094166-67094185 | Msa0657440:CDS | 35.0% | |
| ! | GAACTTTGATTTCCTCCATT+AGG | + | chr4_3:67094196-67094215 | None:intergenic | 35.0% |
| CTTGAGGAAGCCAAATTTAT+TGG | - | chr4_3:67094215-67094234 | Msa0657440:CDS | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | + | chr4_3:67094276-67094295 | None:intergenic | 35.0% |
| CCTTACTTCAGAGAAAAGTT+AGG | - | chr4_3:67094273-67094292 | Msa0657440:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | + | chr4_3:67094643-67094662 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | - | chr4_3:67094652-67094671 | Msa0657440:CDS | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | - | chr4_3:67094667-67094686 | Msa0657440:CDS | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | + | chr4_3:67094693-67094712 | None:intergenic | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | - | chr4_3:67094702-67094721 | Msa0657440:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | + | chr4_3:67094724-67094743 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | - | chr4_3:67094775-67094794 | Msa0657440:CDS | 35.0% | |
| ATGGACAGGATTGGAAATTA+TGG | - | chr4_3:67094941-67094960 | Msa0657440:CDS | 35.0% | |
| TGGACAGGATTGGAAATTAT+GGG | - | chr4_3:67094942-67094961 | Msa0657440:CDS | 35.0% | |
| TGGAAACAAGAGTTCCACAA+AGG | - | chr4_3:67092945-67092964 | Msa0657440:CDS | 40.0% | |
| ACAATTGGTGCAACAGATAG+AGG | + | chr4_3:67093036-67093055 | None:intergenic | 40.0% | |
| !!! | TTTTCAAGAGCATCAAGCAC+TGG | + | chr4_3:67093084-67093103 | None:intergenic | 40.0% |
| CGTCTCAACATTGCTAAAGA+GGG | - | chr4_3:67093111-67093130 | Msa0657440:CDS | 40.0% | |
| ! | CTTCCAACCATTGTTGTTGT+TGG | - | chr4_3:67093141-67093160 | Msa0657440:CDS | 40.0% |
| TCTCCAACAACAACAATGGT+TGG | + | chr4_3:67093147-67093166 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCATC+TGG | - | chr4_3:67093156-67093175 | Msa0657440:CDS | 40.0% | |
| AGTGTCCTTGAATCATTAGC+TGG | - | chr4_3:67093186-67093205 | Msa0657440:CDS | 40.0% | |
| GTGGACAAGGAATTTGTACA+AGG | - | chr4_3:67093223-67093242 | Msa0657440:CDS | 40.0% | |
| ! | TTTTGCAGCCTCATAACCAA+AGG | + | chr4_3:67093252-67093271 | None:intergenic | 40.0% |
| TGGAGTTCCTGATCTTACTA+TGG | - | chr4_3:67093434-67093453 | Msa0657440:CDS | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | - | chr4_3:67093447-67093466 | Msa0657440:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | - | chr4_3:67093471-67093490 | Msa0657440:CDS | 40.0% | |
| !! | TTATCAGGTTGACCATGAAC+AGG | + | chr4_3:67093486-67093505 | None:intergenic | 40.0% |
| AAGGCTGATAAATCTCCTGA+AGG | - | chr4_3:67093669-67093688 | Msa0657440:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | - | chr4_3:67093677-67093696 | Msa0657440:CDS | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | - | chr4_3:67093708-67093727 | Msa0657440:CDS | 40.0% | |
| ! | GACGATGTTAACATTGGTCT+TGG | - | chr4_3:67093714-67093733 | Msa0657440:CDS | 40.0% |
| AAGAGTCTTACGAAGATGCA+AGG | - | chr4_3:67093766-67093785 | Msa0657440:CDS | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | + | chr4_3:67093861-67093880 | None:intergenic | 40.0% |
| GATTTGCAGAAAAGCAGACA+TGG | + | chr4_3:67094009-67094028 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | - | chr4_3:67094178-67094197 | Msa0657440:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | + | chr4_3:67094183-67094202 | None:intergenic | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | - | chr4_3:67094181-67094200 | Msa0657440:CDS | 40.0% | |
| GGAGGAAATCAAAGTTCTTG+AGG | - | chr4_3:67094199-67094218 | Msa0657440:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | + | chr4_3:67094245-67094264 | None:intergenic | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | + | chr4_3:67094257-67094276 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | + | chr4_3:67094517-67094536 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | + | chr4_3:67094518-67094537 | None:intergenic | 40.0% | |
| ! | TCAAGTACTGTGAAGCTGAA+AGG | - | chr4_3:67094596-67094615 | Msa0657440:CDS | 40.0% |
| TAAGCCTGATTCAACATGTG+TGG | + | chr4_3:67094659-67094678 | None:intergenic | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | - | chr4_3:67094809-67094828 | Msa0657440:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | - | chr4_3:67094852-67094871 | Msa0657440:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | + | chr4_3:67094863-67094882 | None:intergenic | 40.0% | |
| TCCAATCCTGTCCATAATGT+TGG | + | chr4_3:67094936-67094955 | None:intergenic | 40.0% | |
| GGACAGGATTGGAAATTATG+GGG | - | chr4_3:67094943-67094962 | Msa0657440:CDS | 40.0% | |
| TGGAAACAAGAGTTCCACAA+AGG | - | chr4_3:67092945-67092964 | Msa0657440:CDS | 40.0% | |
| ACAATTGGTGCAACAGATAG+AGG | + | chr4_3:67093036-67093055 | None:intergenic | 40.0% | |
| !!! | TTTTCAAGAGCATCAAGCAC+TGG | + | chr4_3:67093084-67093103 | None:intergenic | 40.0% |
| CGTCTCAACATTGCTAAAGA+GGG | - | chr4_3:67093111-67093130 | Msa0657440:CDS | 40.0% | |
| ! | CTTCCAACCATTGTTGTTGT+TGG | - | chr4_3:67093141-67093160 | Msa0657440:CDS | 40.0% |
| TCTCCAACAACAACAATGGT+TGG | + | chr4_3:67093147-67093166 | None:intergenic | 40.0% | |
| GTTGTTGGAGATCAATCATC+TGG | - | chr4_3:67093156-67093175 | Msa0657440:CDS | 40.0% | |
| AGTGTCCTTGAATCATTAGC+TGG | - | chr4_3:67093186-67093205 | Msa0657440:CDS | 40.0% | |
| GTGGACAAGGAATTTGTACA+AGG | - | chr4_3:67093223-67093242 | Msa0657440:CDS | 40.0% | |
| ! | TTTTGCAGCCTCATAACCAA+AGG | + | chr4_3:67093252-67093271 | None:intergenic | 40.0% |
| TGGAGTTCCTGATCTTACTA+TGG | - | chr4_3:67093434-67093453 | Msa0657440:CDS | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | - | chr4_3:67093447-67093466 | Msa0657440:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | - | chr4_3:67093471-67093490 | Msa0657440:CDS | 40.0% | |
| !! | TTATCAGGTTGACCATGAAC+AGG | + | chr4_3:67093486-67093505 | None:intergenic | 40.0% |
| AAGGCTGATAAATCTCCTGA+AGG | - | chr4_3:67093669-67093688 | Msa0657440:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | - | chr4_3:67093677-67093696 | Msa0657440:CDS | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | - | chr4_3:67093708-67093727 | Msa0657440:CDS | 40.0% | |
| ! | GACGATGTTAACATTGGTCT+TGG | - | chr4_3:67093714-67093733 | Msa0657440:CDS | 40.0% |
| AAGAGTCTTACGAAGATGCA+AGG | - | chr4_3:67093766-67093785 | Msa0657440:CDS | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | + | chr4_3:67093861-67093880 | None:intergenic | 40.0% |
| GATTTGCAGAAAAGCAGACA+TGG | + | chr4_3:67094009-67094028 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | - | chr4_3:67094178-67094197 | Msa0657440:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | + | chr4_3:67094183-67094202 | None:intergenic | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | - | chr4_3:67094181-67094200 | Msa0657440:CDS | 40.0% | |
| GGAGGAAATCAAAGTTCTTG+AGG | - | chr4_3:67094199-67094218 | Msa0657440:CDS | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | + | chr4_3:67094245-67094264 | None:intergenic | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | + | chr4_3:67094257-67094276 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | + | chr4_3:67094517-67094536 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | + | chr4_3:67094518-67094537 | None:intergenic | 40.0% | |
| ! | TCAAGTACTGTGAAGCTGAA+AGG | - | chr4_3:67094596-67094615 | Msa0657440:CDS | 40.0% |
| TAAGCCTGATTCAACATGTG+TGG | + | chr4_3:67094659-67094678 | None:intergenic | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | - | chr4_3:67094809-67094828 | Msa0657440:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | - | chr4_3:67094852-67094871 | Msa0657440:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | + | chr4_3:67094863-67094882 | None:intergenic | 40.0% | |
| TCCAATCCTGTCCATAATGT+TGG | + | chr4_3:67094936-67094955 | None:intergenic | 40.0% | |
| GGACAGGATTGGAAATTATG+GGG | - | chr4_3:67094943-67094962 | Msa0657440:CDS | 40.0% | |
| GCGTCTCAACATTGCTAAAG+AGG | - | chr4_3:67093110-67093129 | Msa0657440:CDS | 45.0% | |
| GTACAAATTCCTTGTCCACG+TGG | + | chr4_3:67093222-67093241 | None:intergenic | 45.0% | |
| !! | CAAGGGTACCTTTGGTTATG+AGG | - | chr4_3:67093241-67093260 | Msa0657440:CDS | 45.0% |
| TATCAAAGTCAGTGGGGTGT+TGG | + | chr4_3:67093403-67093422 | None:intergenic | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | + | chr4_3:67093468-67093487 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | - | chr4_3:67093977-67093996 | Msa0657440:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | + | chr4_3:67093981-67094000 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | + | chr4_3:67094459-67094478 | None:intergenic | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | - | chr4_3:67094466-67094485 | Msa0657440:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | - | chr4_3:67094505-67094524 | Msa0657440:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | - | chr4_3:67094508-67094527 | Msa0657440:CDS | 45.0% | |
| ! | GGAGGAGTATAACAAGCTGA+TGG | - | chr4_3:67094526-67094545 | Msa0657440:CDS | 45.0% |
| ! | ACTGTGAAGCTGAAAGGTGT+TGG | - | chr4_3:67094602-67094621 | Msa0657440:CDS | 45.0% |
| AGGCCAGATTGACAGCTTAT+TGG | - | chr4_3:67094687-67094706 | Msa0657440:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | - | chr4_3:67094705-67094724 | Msa0657440:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | - | chr4_3:67094812-67094831 | Msa0657440:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | - | chr4_3:67094851-67094870 | Msa0657440:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | - | chr4_3:67094910-67094929 | Msa0657440:CDS | 45.0% | |
| GCCAACATTATGGACAGGAT+TGG | - | chr4_3:67094932-67094951 | Msa0657440:CDS | 45.0% | |
| GCGTCTCAACATTGCTAAAG+AGG | - | chr4_3:67093110-67093129 | Msa0657440:CDS | 45.0% | |
| GTACAAATTCCTTGTCCACG+TGG | + | chr4_3:67093222-67093241 | None:intergenic | 45.0% | |
| !! | CAAGGGTACCTTTGGTTATG+AGG | - | chr4_3:67093241-67093260 | Msa0657440:CDS | 45.0% |
| TATCAAAGTCAGTGGGGTGT+TGG | + | chr4_3:67093403-67093422 | None:intergenic | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | + | chr4_3:67093468-67093487 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | - | chr4_3:67093977-67093996 | Msa0657440:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | + | chr4_3:67093981-67094000 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | + | chr4_3:67094459-67094478 | None:intergenic | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | - | chr4_3:67094466-67094485 | Msa0657440:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | - | chr4_3:67094505-67094524 | Msa0657440:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | - | chr4_3:67094508-67094527 | Msa0657440:CDS | 45.0% | |
| ! | GGAGGAGTATAACAAGCTGA+TGG | - | chr4_3:67094526-67094545 | Msa0657440:CDS | 45.0% |
| ! | ACTGTGAAGCTGAAAGGTGT+TGG | - | chr4_3:67094602-67094621 | Msa0657440:CDS | 45.0% |
| AGGCCAGATTGACAGCTTAT+TGG | - | chr4_3:67094687-67094706 | Msa0657440:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | - | chr4_3:67094705-67094724 | Msa0657440:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | - | chr4_3:67094812-67094831 | Msa0657440:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | - | chr4_3:67094851-67094870 | Msa0657440:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | - | chr4_3:67094910-67094929 | Msa0657440:CDS | 45.0% | |
| GCCAACATTATGGACAGGAT+TGG | - | chr4_3:67094932-67094951 | Msa0657440:CDS | 45.0% | |
| GGTGCAACAGATAGAGGTTG+AGG | + | chr4_3:67093030-67093049 | None:intergenic | 50.0% | |
| GCTCTGGCTGTGGAAGTAAA+TGG | + | chr4_3:67093275-67093294 | None:intergenic | 50.0% | |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | - | chr4_3:67093281-67093300 | Msa0657440:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | + | chr4_3:67093285-67093304 | None:intergenic | 50.0% |
| TGCTATAAACGCAGCCACTG+AGG | - | chr4_3:67093350-67093369 | Msa0657440:CDS | 50.0% | |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | + | chr4_3:67093391-67093410 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | - | chr4_3:67093650-67093669 | Msa0657440:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | - | chr4_3:67093683-67093702 | Msa0657440:CDS | 50.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | + | chr4_3:67093687-67093706 | None:intergenic | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | - | chr4_3:67093811-67093830 | Msa0657440:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | - | chr4_3:67093947-67093966 | Msa0657440:CDS | 50.0% |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | - | chr4_3:67094822-67094841 | Msa0657440:CDS | 50.0% |
| GGAAGAGACAGAAGTTGAGC+AGG | - | chr4_3:67094873-67094892 | Msa0657440:CDS | 50.0% | |
| AGAGACCGTGGCCAACATTA+TGG | - | chr4_3:67094922-67094941 | Msa0657440:CDS | 50.0% | |
| CCTGTCCATAATGTTGGCCA+CGG | + | chr4_3:67094930-67094949 | None:intergenic | 50.0% | |
| GGTGCAACAGATAGAGGTTG+AGG | + | chr4_3:67093030-67093049 | None:intergenic | 50.0% | |
| GCTCTGGCTGTGGAAGTAAA+TGG | + | chr4_3:67093275-67093294 | None:intergenic | 50.0% | |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | - | chr4_3:67093281-67093300 | Msa0657440:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | + | chr4_3:67093285-67093304 | None:intergenic | 50.0% |
| TGCTATAAACGCAGCCACTG+AGG | - | chr4_3:67093350-67093369 | Msa0657440:CDS | 50.0% | |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | + | chr4_3:67093391-67093410 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | - | chr4_3:67093650-67093669 | Msa0657440:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | - | chr4_3:67093683-67093702 | Msa0657440:CDS | 50.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | + | chr4_3:67093687-67093706 | None:intergenic | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | - | chr4_3:67093811-67093830 | Msa0657440:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | - | chr4_3:67093947-67093966 | Msa0657440:CDS | 50.0% |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | - | chr4_3:67094822-67094841 | Msa0657440:CDS | 50.0% |
| GGAAGAGACAGAAGTTGAGC+AGG | - | chr4_3:67094873-67094892 | Msa0657440:CDS | 50.0% | |
| AGAGACCGTGGCCAACATTA+TGG | - | chr4_3:67094922-67094941 | Msa0657440:CDS | 50.0% | |
| CCTGTCCATAATGTTGGCCA+CGG | + | chr4_3:67094930-67094949 | None:intergenic | 50.0% | |
| ATCAGCTTGCCACGTGGACA+AGG | - | chr4_3:67093210-67093229 | Msa0657440:CDS | 55.0% | |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | - | chr4_3:67093373-67093392 | Msa0657440:CDS | 55.0% |
| AGACATGGCATCAGCCAGTG+AGG | + | chr4_3:67093994-67094013 | None:intergenic | 55.0% | |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | - | chr4_3:67094832-67094851 | Msa0657440:CDS | 55.0% |
| CCGTGGCCAACATTATGGAC+AGG | - | chr4_3:67094927-67094946 | Msa0657440:CDS | 55.0% | |
| ATCAGCTTGCCACGTGGACA+AGG | - | chr4_3:67093210-67093229 | Msa0657440:CDS | 55.0% | |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | - | chr4_3:67093373-67093392 | Msa0657440:CDS | 55.0% |
| AGACATGGCATCAGCCAGTG+AGG | + | chr4_3:67093994-67094013 | None:intergenic | 55.0% | |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | - | chr4_3:67094832-67094851 | Msa0657440:CDS | 55.0% |
| CCGTGGCCAACATTATGGAC+AGG | - | chr4_3:67094927-67094946 | Msa0657440:CDS | 55.0% | |
| GCTGGTATCAGCTTGCCACG+TGG | - | chr4_3:67093204-67093223 | Msa0657440:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | + | chr4_3:67093367-67093386 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | - | chr4_3:67093372-67093391 | Msa0657440:CDS | 60.0% |
| GCTGGTATCAGCTTGCCACG+TGG | - | chr4_3:67093204-67093223 | Msa0657440:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | + | chr4_3:67093367-67093386 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | - | chr4_3:67093372-67093391 | Msa0657440:CDS | 60.0% |
| GCAGCCACTGAGGAGCTTGC+TGG | - | chr4_3:67093360-67093379 | Msa0657440:CDS | 65.0% | |
| GCAGCCACTGAGGAGCTTGC+TGG | - | chr4_3:67093360-67093379 | Msa0657440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 67092937 | 67094973 | 67092937 | ID=Msa0657440;Name=Msa0657440 |
| chr4_3 | mRNA | 67092937 | 67094973 | 67092937 | ID=Msa0657440-mRNA-1;Parent=Msa0657440;Name=Msa0657440-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|678 |
| chr4_3 | exon | 67092937 | 67094973 | 67092937 | ID=Msa0657440-mRNA-1:exon:19337;Parent=Msa0657440-mRNA-1 |
| chr4_3 | CDS | 67092937 | 67094973 | 67092937 | ID=Msa0657440-mRNA-1:cds;Parent=Msa0657440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
