Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0568970 | XP_003630233.1 | 90.233 | 430 | 10 | 2 | 21 | 418 | 1 | 430 | 0.0 | 773 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0568970 | sp|P94479|YNBB_BACSU | 38.275 | 371 | 197 | 4 | 75 | 414 | 27 | 396 | 3.93e-89 | 280 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0568970 | G7LD70 | 90.233 | 430 | 10 | 2 | 21 | 418 | 1 | 430 | 0.0 | 773 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0112290 | Msa0568970 | 0.805377 | 1.374764e-49 | -8.615850e-47 |
Msa0175280 | Msa0568970 | 0.807404 | 5.139137e-50 | -8.615850e-47 |
Msa0176710 | Msa0568970 | 0.812455 | 4.204417e-51 | -8.615850e-47 |
Msa0380440 | Msa0568970 | 0.800879 | 1.171675e-48 | -8.615850e-47 |
Msa0426480 | Msa0568970 | 0.814084 | 1.844914e-51 | -8.615850e-47 |
Msa0308430 | Msa0568970 | 0.805108 | 1.565086e-49 | -8.615850e-47 |
Msa0340440 | Msa0568970 | 0.816268 | 6.036782e-52 | -8.615850e-47 |
Msa0568170 | Msa0568970 | 0.835263 | 1.857884e-56 | -8.615850e-47 |
Msa0568970 | Msa0570770 | 0.803934 | 2.750517e-49 | -8.615850e-47 |
Msa0568970 | Msa0573300 | 0.837042 | 6.562589e-57 | -8.615850e-47 |
Msa0568970 | Msa0833630 | 0.807760 | 4.318618e-50 | -8.615850e-47 |
Msa0568970 | Msa1083140 | 0.804720 | 1.886331e-49 | -8.615850e-47 |
Msa0568970 | Msa1166960 | 0.800742 | 1.249406e-48 | -8.615850e-47 |
Msa0568970 | Msa1238710 | 0.808985 | 2.365744e-50 | -8.615850e-47 |
Msa0568970 | Msa1258940 | 0.820208 | 7.745561e-53 | -8.615850e-47 |
Msa0568970 | Msa1418600 | 0.804521 | 2.075583e-49 | -8.615850e-47 |
Msa0568970 | Msa1437320 | 0.804161 | 2.467055e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0568970 | MtrunA17_Chr8g0383951 | 90.233 | 430 | 10 | 2 | 21 | 418 | 1 | 430 | 0.0 | 773 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 142 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGTTCCCTTCAAGATTT+TGG | 0.069730 | 4_1:+70610883 | Msa0568970:CDS |
GATTGGTACAAATTCAATTA+AGG | 0.200850 | 4_1:+70612981 | Msa0568970:three_prime_UTR |
CGCCTTTCTGCGCCCGGGCT+TGG | 0.209663 | 4_1:+70611932 | Msa0568970:CDS |
TGCTGAAGTTCTGGCATCTA+AGG | 0.222981 | 4_1:+70612140 | Msa0568970:CDS |
CTTCCTGATTGCTGAAGTTC+TGG | 0.223414 | 4_1:+70612131 | Msa0568970:CDS |
AAAAGGGACTCTGGTGGTTT+GGG | 0.240265 | 4_1:+70610865 | Msa0568970:CDS |
GACACATTAGAGGAAGTAAT+TGG | 0.241899 | 4_1:+70610841 | Msa0568970:CDS |
GAAAAGGGACTCTGGTGGTT+TGG | 0.264666 | 4_1:+70610864 | Msa0568970:CDS |
TGCAATGTGTCTCTTTCTTA+TGG | 0.272210 | 4_1:+70613317 | Msa0568970:three_prime_UTR |
GGGTGAGTTGATGTAGATTT+TGG | 0.281925 | 4_1:+70613064 | Msa0568970:three_prime_UTR |
TTCTTTCACCTCAAATGGTT+GGG | 0.316414 | 4_1:+70612011 | Msa0568970:CDS |
CTCACCCGCTGCACGAGATT+TGG | 0.332656 | 4_1:-70613048 | None:intergenic |
GTCACTGTTAGTTCGGATTT+CGG | 0.342424 | 4_1:-70613026 | None:intergenic |
ATTGGTACAAATTCAATTAA+GGG | 0.353441 | 4_1:+70612982 | Msa0568970:three_prime_UTR |
CCATGTGGCGGATATGTTGC+TGG | 0.367862 | 4_1:+70611878 | Msa0568970:CDS |
GCCGATGGAACCTTTATTGA+TGG | 0.368807 | 4_1:+70612684 | Msa0568970:CDS |
GCGGACAATATTATTAAGAT+TGG | 0.371580 | 4_1:+70612964 | Msa0568970:three_prime_UTR |
ACAGCAAATGGCTCTCTAAA+AGG | 0.374402 | 4_1:-70612735 | None:intergenic |
GCAGCGCGCCTTTCTGCGCC+CGG | 0.376005 | 4_1:+70611926 | Msa0568970:CDS |
ATTATTTCTTTCACCTCAAA+TGG | 0.379919 | 4_1:+70612006 | Msa0568970:CDS |
CCGAGGATGGTGGACTTGAC+TGG | 0.385164 | 4_1:+70611008 | Msa0568970:CDS |
CCAATTGCGGGTACCACTCC+TGG | 0.392343 | 4_1:+70612508 | Msa0568970:CDS |
ACTTCCTCTAATGTGTCATA+TGG | 0.402174 | 4_1:-70610835 | None:intergenic |
ACTAGTACTTCCATCAATAA+AGG | 0.405469 | 4_1:-70612694 | None:intergenic |
AAATGCAGGGTGGCACTCAT+TGG | 0.408594 | 4_1:+70612848 | Msa0568970:intron |
ATTGCTTCCCCAACCATTTG+AGG | 0.410807 | 4_1:-70612019 | None:intergenic |
TCGGCAGGGTGCAGATTTGA+TGG | 0.424522 | 4_1:+70611817 | Msa0568970:intron |
ACCACAATCCACACCAAGCC+CGG | 0.425545 | 4_1:-70611945 | None:intergenic |
TAGAGGAAGTAATTGGGAAA+AGG | 0.426036 | 4_1:+70610848 | Msa0568970:CDS |
TGGCACTCATTGGACTCAAT+GGG | 0.438629 | 4_1:+70612858 | Msa0568970:CDS |
GGTCAAAACAGTTCTTATCA+TGG | 0.438849 | 4_1:-70613253 | None:intergenic |
AGAGGTCATGTGGTTATTCA+TGG | 0.439010 | 4_1:+70611080 | Msa0568970:CDS |
AGTGGTACCCGCAATTGGTT+TGG | 0.441177 | 4_1:-70612503 | None:intergenic |
ATCAGCTATTGTTCGTTCAC+AGG | 0.442751 | 4_1:+70610162 | Msa0568970:CDS |
GTGGCACTCATTGGACTCAA+TGG | 0.444697 | 4_1:+70612857 | Msa0568970:CDS |
AACCTGAACTGTATCACATC+GGG | 0.445399 | 4_1:-70612193 | None:intergenic |
ATGCCAGAACTTCAGCAATC+AGG | 0.447778 | 4_1:-70612134 | None:intergenic |
AGATTTGGTCACTGTTAGTT+CGG | 0.448723 | 4_1:-70613033 | None:intergenic |
GGTGAAATACCGAGAAGTTC+CGG | 0.451794 | 4_1:+70610906 | Msa0568970:CDS |
CCAGGAGTGGTACCCGCAAT+TGG | 0.455539 | 4_1:-70612508 | None:intergenic |
CAGCGCGCCTTTCTGCGCCC+GGG | 0.457346 | 4_1:+70611927 | Msa0568970:CDS |
AGAGGAAGTAATTGGGAAAA+GGG | 0.458354 | 4_1:+70610849 | Msa0568970:CDS |
GCCTGGCAAAATACAGCAAA+TGG | 0.460230 | 4_1:-70612747 | None:intergenic |
TTTCTTTCACCTCAAATGGT+TGG | 0.466714 | 4_1:+70612010 | Msa0568970:CDS |
TCATACACCAAACCAATTGC+GGG | 0.468084 | 4_1:+70612496 | Msa0568970:CDS |
TTCTGCGCCCGGGCTTGGTG+TGG | 0.471332 | 4_1:+70611937 | Msa0568970:CDS |
CAGACCTCTGATGCATATCC+AGG | 0.477506 | 4_1:-70612526 | None:intergenic |
TCTGGAACGAAGGGATTGAT+AGG | 0.478948 | 4_1:-70609136 | None:intergenic |
TGCCTGTAGGCCGTACAACT+TGG | 0.486168 | 4_1:+70612415 | Msa0568970:intron |
CACCAAGCCCGGGCGCAGAA+AGG | 0.488183 | 4_1:-70611934 | None:intergenic |
AGTTTGAGTGTTAATGACAT+AGG | 0.488359 | 4_1:+70611109 | Msa0568970:CDS |
TAGCGAATGGTAGATGTTGT+TGG | 0.491205 | 4_1:-70609094 | None:intergenic |
TGCTCCATATGACACATTAG+AGG | 0.492829 | 4_1:+70610831 | Msa0568970:CDS |
CAGGGTGCAGATTTGATGGC+AGG | 0.495304 | 4_1:+70611821 | Msa0568970:intron |
GATGCAAAATCCTGAGTGTT+CGG | 0.498240 | 4_1:+70611668 | Msa0568970:intron |
ATTTCACCCCAAAATCTTGA+AGG | 0.501972 | 4_1:-70610891 | None:intergenic |
TTTCATCAGCTTGCCGAGGA+TGG | 0.507265 | 4_1:+70610995 | Msa0568970:intron |
AATGGTTGGGGAAGCAATCA+AGG | 0.508889 | 4_1:+70612024 | Msa0568970:CDS |
TGTTCAGAGAAGCTCTCCTG+TGG | 0.510171 | 4_1:+70612471 | Msa0568970:CDS |
CATCAGCTTGCCGAGGATGG+TGG | 0.516636 | 4_1:+70610998 | Msa0568970:intron |
GTCATGGTGGATAATTGCTA+TGG | 0.519956 | 4_1:+70611690 | Msa0568970:CDS |
TAGATTTCAGAACTTCTCCT+AGG | 0.521668 | 4_1:-70612888 | None:intergenic |
GTTTGAGTGTTAATGACATA+GGG | 0.522137 | 4_1:+70611110 | Msa0568970:CDS |
GTTCAGAGAAGCTCTCCTGT+GGG | 0.522769 | 4_1:+70612472 | Msa0568970:CDS |
AGCGAGTACCTCTGGAACGA+AGG | 0.525027 | 4_1:-70609146 | None:intergenic |
GTTAACTTGTGCTGAAAGAA+TGG | 0.526680 | 4_1:+70613339 | Msa0568970:three_prime_UTR |
ACACATTAGAGGAAGTAATT+GGG | 0.527457 | 4_1:+70610842 | Msa0568970:CDS |
CCAGTCAAGTCCACCATCCT+CGG | 0.529194 | 4_1:-70611008 | None:intergenic |
TCTCAGGTTATCTTTGCCGA+TGG | 0.530646 | 4_1:+70612669 | Msa0568970:intron |
TCTTTCACCTCAAATGGTTG+GGG | 0.531494 | 4_1:+70612012 | Msa0568970:CDS |
AAAGGCTCTCATGATATCAC+CGG | 0.531537 | 4_1:-70611975 | None:intergenic |
CCCGGGCTTGGTGTGGATTG+TGG | 0.531980 | 4_1:+70611944 | Msa0568970:CDS |
ACTCAATGGGGACTAGTCCT+AGG | 0.534013 | 4_1:+70612871 | Msa0568970:CDS |
GTGACCAAATCTCGTGCAGC+GGG | 0.534283 | 4_1:+70613044 | Msa0568970:three_prime_UTR |
GTGGATTGTGGTTCAACTCC+CGG | 0.534401 | 4_1:+70611956 | Msa0568970:CDS |
TCATGGTGGATAATTGCTAT+GGG | 0.535135 | 4_1:+70611691 | Msa0568970:CDS |
CAACAATTTCTGCAAAAGCC+TGG | 0.536674 | 4_1:-70610132 | None:intergenic |
AAGTTCTGAAATCTATATGA+TGG | 0.540257 | 4_1:+70612896 | Msa0568970:CDS |
CAAAATGTGCACTCATACAG+AGG | 0.542723 | 4_1:+70611062 | Msa0568970:CDS |
AGTAGCATACCGGAACTTCT+CGG | 0.544340 | 4_1:-70610915 | None:intergenic |
GAGATTCGAACGGGATGCGT+AGG | 0.544625 | 4_1:-70609067 | None:intergenic |
GTCATACACCAAACCAATTG+CGG | 0.548656 | 4_1:+70612495 | Msa0568970:CDS |
CCACAATCCACACCAAGCCC+GGG | 0.549428 | 4_1:-70611944 | None:intergenic |
GCTGAAGTTCTGGCATCTAA+GGG | 0.550000 | 4_1:+70612141 | Msa0568970:CDS |
ACTAGTGAGCTTTCATGTGA+TGG | 0.559350 | 4_1:+70612711 | Msa0568970:CDS |
TTAATAATATTGTCCGCTGA+AGG | 0.559995 | 4_1:-70612958 | None:intergenic |
TTCTGAATTCAATGCATCAA+CGG | 0.560614 | 4_1:-70609251 | None:intergenic |
GTAATTGGGAAAAGGGACTC+TGG | 0.564622 | 4_1:+70610856 | Msa0568970:CDS |
GGCAGTTTGATAAAGAATCC+TGG | 0.564656 | 4_1:+70611842 | Msa0568970:CDS |
TCCATCAATAAAGGTTCCAT+CGG | 0.567010 | 4_1:-70612685 | None:intergenic |
TGATGCAAAACCAACATGCC+TGG | 0.574370 | 4_1:-70612764 | None:intergenic |
ATATTATCGCATACCACCAT+GGG | 0.576389 | 4_1:-70611738 | None:intergenic |
GTTGGAATGGAGATTCGAAC+GGG | 0.578637 | 4_1:-70609076 | None:intergenic |
CATATTATCGCATACCACCA+TGG | 0.578930 | 4_1:-70611739 | None:intergenic |
TTTCACCCCAAAATCTTGAA+GGG | 0.581207 | 4_1:-70610890 | None:intergenic |
GTATACACCACATACTATCA+AGG | 0.584193 | 4_1:-70613274 | None:intergenic |
AATGGTAGATGTTGTTGGAA+TGG | 0.587350 | 4_1:-70609089 | None:intergenic |
AAAAGAACAAAAGATAAGGA+GGG | 0.587410 | 4_1:+70609004 | Msa0568970:CDS |
GGGACGTGAAGCTCTTGACC+AGG | 0.591339 | 4_1:+70610114 | Msa0568970:CDS |
CTCACGGCTTCCAAGTTGTA+CGG | 0.592315 | 4_1:-70612425 | None:intergenic |
CATGGAGCAATCGTTCCACC+AGG | 0.592431 | 4_1:-70611860 | None:intergenic |
ACATATTATACGACCTTCAG+CGG | 0.593384 | 4_1:+70612945 | Msa0568970:three_prime_UTR |
CACTCCTGGATATGCATCAG+AGG | 0.597649 | 4_1:+70612522 | Msa0568970:CDS |
CCAGCAACATATCCGCCACA+TGG | 0.599034 | 4_1:-70611878 | None:intergenic |
GTGAAAAGCTTTAAGAACAC+GGG | 0.600306 | 4_1:-70609311 | None:intergenic |
CATCACTATACTTACAAACA+AGG | 0.600332 | 4_1:-70613296 | None:intergenic |
TGTTGGAATGGAGATTCGAA+CGG | 0.600412 | 4_1:-70609077 | None:intergenic |
TATCAATCCCTTCGTTCCAG+AGG | 0.600711 | 4_1:+70609138 | Msa0568970:CDS |
AAATCCTGAGTGTTCGGTCA+TGG | 0.605022 | 4_1:+70611674 | Msa0568970:CDS |
CATGTGGCGGATATGTTGCT+GGG | 0.607387 | 4_1:+70611879 | Msa0568970:CDS |
GAATTCAGAATTCAGAGCAG+TGG | 0.610064 | 4_1:+70609264 | Msa0568970:CDS |
GAAGCGAGAGGCATAGCGAA+TGG | 0.611375 | 4_1:-70609107 | None:intergenic |
TAATTGCTATGGGGAACTTG+TGG | 0.611820 | 4_1:+70611701 | Msa0568970:CDS |
GGTACAAATTCAATTAAGGG+TGG | 0.613885 | 4_1:+70612985 | Msa0568970:three_prime_UTR |
TCCTGAGTGTTCGGTCATGG+TGG | 0.614793 | 4_1:+70611677 | Msa0568970:CDS |
AGGATAAGCAGAGAAGGCGC+AGG | 0.615839 | 4_1:-70609047 | None:intergenic |
ATGCGTAGGATAAGCAGAGA+AGG | 0.621133 | 4_1:-70609053 | None:intergenic |
TGCTATGGGGAACTTGTGGA+AGG | 0.622880 | 4_1:+70611705 | Msa0568970:CDS |
TTCAGAGAAGCTCTCCTGTG+GGG | 0.632335 | 4_1:+70612473 | Msa0568970:CDS |
TGTGAAAAGCTTTAAGAACA+CGG | 0.632469 | 4_1:-70609312 | None:intergenic |
GGTTTGGTGTATGACCCCAC+AGG | 0.633665 | 4_1:-70612487 | None:intergenic |
AAACCTGAACTGTATCACAT+CGG | 0.634425 | 4_1:-70612194 | None:intergenic |
CTCTGATGCATATCCAGGAG+TGG | 0.634582 | 4_1:-70612521 | None:intergenic |
GGAAGGCATTGAACCTCCCA+TGG | 0.640149 | 4_1:+70611722 | Msa0568970:CDS |
AAGGCTCTCATGATATCACC+GGG | 0.640580 | 4_1:-70611974 | None:intergenic |
GCGAGTACCTCTGGAACGAA+GGG | 0.641161 | 4_1:-70609145 | None:intergenic |
TCCACCATGACCGAACACTC+AGG | 0.644287 | 4_1:-70611678 | None:intergenic |
CAGAACTTCAGCAATCAGGA+AGG | 0.652209 | 4_1:-70612130 | None:intergenic |
GCACTCATACAGAGGTCATG+TGG | 0.658940 | 4_1:+70611070 | Msa0568970:CDS |
AGTGACCAAATCTCGTGCAG+CGG | 0.661355 | 4_1:+70613043 | Msa0568970:three_prime_UTR |
TTATCGCATACCACCATGGG+AGG | 0.664402 | 4_1:-70611735 | None:intergenic |
GGAACGATTGCTCCATGTGG+CGG | 0.666888 | 4_1:+70611866 | Msa0568970:CDS |
GGCACTCATTGGACTCAATG+GGG | 0.670357 | 4_1:+70612859 | Msa0568970:CDS |
ATTGGGAAAAGGGACTCTGG+TGG | 0.681378 | 4_1:+70610859 | Msa0568970:CDS |
AAAAGCTTTAAGAACACGGG+TGG | 0.682092 | 4_1:-70609308 | None:intergenic |
GATAGGAACAGAGAAGCGAG+AGG | 0.690097 | 4_1:-70609119 | None:intergenic |
GGTGGAACGATTGCTCCATG+TGG | 0.694007 | 4_1:+70611863 | Msa0568970:CDS |
CCTGAACTGTATCACATCGG+GGG | 0.701546 | 4_1:-70612191 | None:intergenic |
ACCTGAACTGTATCACATCG+GGG | 0.703191 | 4_1:-70612192 | None:intergenic |
CATGGTGGATAATTGCTATG+GGG | 0.706640 | 4_1:+70611692 | Msa0568970:CDS |
AGGCATTGAACCTCCCATGG+TGG | 0.710958 | 4_1:+70611725 | Msa0568970:CDS |
AGTTTGATAAAGAATCCTGG+TGG | 0.766897 | 4_1:+70611845 | Msa0568970:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTATTCATTTACAAAA+CGG | - | chr4_1:70609388-70609407 | None:intergenic | 10.0% |
!!! | TGTAAATGAATAATTATTTT+AGG | + | chr4_1:70609391-70609410 | Msa0568970:intron | 10.0% |
!!! | TATTTTAGGTATTTATTTTT+TGG | + | chr4_1:70609405-70609424 | Msa0568970:intron | 10.0% |
!!! | ATTTTAGGTATTTATTTTTT+GGG | + | chr4_1:70609406-70609425 | Msa0568970:intron | 10.0% |
!! | ATATTAAGTTACTTATTAAT+AGG | + | chr4_1:70610209-70610228 | Msa0568970:intron | 10.0% |
!! | TATTAAGTTACTTATTAATA+GGG | + | chr4_1:70610210-70610229 | Msa0568970:intron | 10.0% |
!!! | TTTAAAGTTAATATTATTCA+AGG | + | chr4_1:70611201-70611220 | Msa0568970:intron | 10.0% |
!!! | TTTTAATTTTGATTTTAAGT+TGG | + | chr4_1:70612267-70612286 | Msa0568970:intron | 10.0% |
!! | AACTTAATATAAAGAAAACA+GGG | - | chr4_1:70610199-70610218 | None:intergenic | 15.0% |
!! | TAACTTAATATAAAGAAAAC+AGG | - | chr4_1:70610200-70610219 | None:intergenic | 15.0% |
!! | ATTAAGTTACTTATTAATAG+GGG | + | chr4_1:70610211-70610230 | Msa0568970:intron | 15.0% |
!! | TAGAATATTAGAAGAAAAAA+GGG | - | chr4_1:70610693-70610712 | None:intergenic | 15.0% |
!! | ATAGAATATTAGAAGAAAAA+AGG | - | chr4_1:70610694-70610713 | None:intergenic | 15.0% |
!! | TTCTAATAAAATGATAAATC+TGG | - | chr4_1:70612052-70612071 | None:intergenic | 15.0% |
!!! | AAACATAATCAATTTGTTTA+GGG | - | chr4_1:70612572-70612591 | None:intergenic | 15.0% |
!!! | AAAACATAATCAATTTGTTT+AGG | - | chr4_1:70612573-70612592 | None:intergenic | 15.0% |
!!! | TAAACAAATTGATTATGTTT+TGG | + | chr4_1:70612572-70612591 | Msa0568970:intron | 15.0% |
!!! | AAAATATTGAGTTTTGTAAA+TGG | + | chr4_1:70613188-70613207 | Msa0568970:three_prime_UTR | 15.0% |
!! | AATAAGCTAAAAATAGCTTA+TGG | + | chr4_1:70609566-70609585 | Msa0568970:intron | 20.0% |
!! | ATTAACAAAACAACCAATTA+GGG | - | chr4_1:70609930-70609949 | None:intergenic | 20.0% |
!! | ATTAACAAAACAACCAATTA+GGG | - | chr4_1:70609930-70609949 | None:intergenic | 20.0% |
!! | AATACTAACAATGTTAACAT+TGG | + | chr4_1:70610321-70610340 | Msa0568970:intron | 20.0% |
!! | TATAACTTGAAGCTATAATT+TGG | - | chr4_1:70610497-70610516 | None:intergenic | 20.0% |
!! | TAACTTATAATCAATTCTGA+AGG | + | chr4_1:70610515-70610534 | Msa0568970:intron | 20.0% |
!!! | TTTTTTACCAATAGAATTAC+TGG | + | chr4_1:70611431-70611450 | Msa0568970:intron | 20.0% |
!!! | TAATATTTTTAGGTCACAAA+AGG | - | chr4_1:70611485-70611504 | None:intergenic | 20.0% |
!!! | TTCTGTTCTCTAATATTTTT+AGG | - | chr4_1:70611495-70611514 | None:intergenic | 20.0% |
!!! | ATGCATTTTTTGCTTATATT+TGG | + | chr4_1:70612075-70612094 | Msa0568970:intron | 20.0% |
!!! | ATTTTCTGTATTCTTTACAA+GGG | + | chr4_1:70612105-70612124 | Msa0568970:intron | 20.0% |
!! | CAAAATTAAAAATCAGATAC+AGG | - | chr4_1:70612258-70612277 | None:intergenic | 20.0% |
!! | GTAATATTGAACATCATTTA+AGG | - | chr4_1:70612599-70612618 | None:intergenic | 20.0% |
!! | ATCAAAGAGTTATTAATATC+TGG | - | chr4_1:70612641-70612660 | None:intergenic | 20.0% |
!! | AAGCAATAGTATACTATATA+CGG | + | chr4_1:70612786-70612805 | Msa0568970:intron | 20.0% |
!! | ATTGGTACAAATTCAATTAA+GGG | + | chr4_1:70612982-70613001 | Msa0568970:three_prime_UTR | 20.0% |
! | ACGAAAAAGAACAAAAGATA+AGG | + | chr4_1:70609000-70609019 | Msa0568970:CDS | 25.0% |
! | AAAAAGAACAAAAGATAAGG+AGG | + | chr4_1:70609003-70609022 | Msa0568970:CDS | 25.0% |
! | AAAAGAACAAAAGATAAGGA+GGG | + | chr4_1:70609004-70609023 | Msa0568970:CDS | 25.0% |
! | TTATCTATTAGCATAAGCAT+TGG | - | chr4_1:70609635-70609654 | None:intergenic | 25.0% |
! | AAACATTGGATATATAAGAG+AGG | + | chr4_1:70609746-70609765 | Msa0568970:intron | 25.0% |
! | AACATTGGATATATAAGAGA+GGG | + | chr4_1:70609747-70609766 | Msa0568970:intron | 25.0% |
! | CATTAACAAAACAACCAATT+AGG | - | chr4_1:70609931-70609950 | None:intergenic | 25.0% |
! | CATTAACAAAACAACCAATT+AGG | - | chr4_1:70609931-70609950 | None:intergenic | 25.0% |
! | CATTGTTAGTATTATATGCT+GGG | - | chr4_1:70610314-70610333 | None:intergenic | 25.0% |
! | ACATTGTTAGTATTATATGC+TGG | - | chr4_1:70610315-70610334 | None:intergenic | 25.0% |
! | CATTGGCGATTTAAATAAAA+AGG | + | chr4_1:70610338-70610357 | Msa0568970:intron | 25.0% |
! | TTGAATATGTAACTGGAATA+AGG | + | chr4_1:70610767-70610786 | Msa0568970:intron | 25.0% |
! | AAGAAATATTAGTAGCATAC+CGG | - | chr4_1:70610928-70610947 | None:intergenic | 25.0% |
!!! | ATTCGTATTTTAATTCACAC+AGG | - | chr4_1:70611239-70611258 | None:intergenic | 25.0% |
!! | TATTATGGACTTTTAGATCA+GGG | - | chr4_1:70611294-70611313 | None:intergenic | 25.0% |
! | TATAGCTTCTACTAGTATTA+TGG | - | chr4_1:70611309-70611328 | None:intergenic | 25.0% |
!! | TAGAAGCTATATTGATTGTT+AGG | + | chr4_1:70611318-70611337 | Msa0568970:intron | 25.0% |
!! | AGAAGCTATATTGATTGTTA+GGG | + | chr4_1:70611319-70611338 | Msa0568970:intron | 25.0% |
! | TAGTATTCCAGTAATTCTAT+TGG | - | chr4_1:70611441-70611460 | None:intergenic | 25.0% |
! | TATTAGAGAACAGAAAATAG+TGG | + | chr4_1:70611500-70611519 | Msa0568970:intron | 25.0% |
!! | CTTTTAAATTATGAGCGTTA+GGG | + | chr4_1:70611537-70611556 | Msa0568970:intron | 25.0% |
! | TTTGTGATCGGAAAAATTAT+AGG | - | chr4_1:70611612-70611631 | None:intergenic | 25.0% |
! | AAGAAATAATCCCTGAAAAA+AGG | - | chr4_1:70611996-70612015 | None:intergenic | 25.0% |
!! | ATTATTTCTTTCACCTCAAA+TGG | + | chr4_1:70612006-70612025 | Msa0568970:CDS | 25.0% |
!! | GATTTTCTGTATTCTTTACA+AGG | + | chr4_1:70612104-70612123 | Msa0568970:intron | 25.0% |
! | AAGAGTTATTAATATCTGGT+AGG | - | chr4_1:70612637-70612656 | None:intergenic | 25.0% |
! | AGCAATAGTATACTATATAC+GGG | + | chr4_1:70612787-70612806 | Msa0568970:intron | 25.0% |
!!! | TTCATTTGTTTTTCAAATGC+AGG | + | chr4_1:70612834-70612853 | Msa0568970:intron | 25.0% |
!!! | TCATTTGTTTTTCAAATGCA+GGG | + | chr4_1:70612835-70612854 | Msa0568970:intron | 25.0% |
!!! | AAGTTCTGAAATCTATATGA+TGG | + | chr4_1:70612896-70612915 | Msa0568970:CDS | 25.0% |
! | GATTGGTACAAATTCAATTA+AGG | + | chr4_1:70612981-70613000 | Msa0568970:three_prime_UTR | 25.0% |
!! | TGATGTAGATTTTGGATTTT+TGG | + | chr4_1:70613072-70613091 | Msa0568970:three_prime_UTR | 25.0% |
!! | GATGTAGATTTTGGATTTTT+GGG | + | chr4_1:70613073-70613092 | Msa0568970:three_prime_UTR | 25.0% |
GCAACAAAATTAAGTCTGAA+TGG | - | chr4_1:70609214-70609233 | None:intergenic | 30.0% | |
! | ACTTAATTTTGTTGCAATGC+AGG | + | chr4_1:70609219-70609238 | Msa0568970:intron | 30.0% |
TTCTGAATTCAATGCATCAA+CGG | - | chr4_1:70609254-70609273 | None:intergenic | 30.0% | |
!! | TGTGAAAAGCTTTAAGAACA+CGG | - | chr4_1:70609315-70609334 | None:intergenic | 30.0% |
!! | GCTGTTTTCATAAGCTATTT+TGG | + | chr4_1:70609531-70609550 | Msa0568970:intron | 30.0% |
!! | TGTTGTTTCTATAAGCTCTT+CGG | + | chr4_1:70609599-70609618 | Msa0568970:intron | 30.0% |
TCAAATAAGACAATCCAAAC+AGG | + | chr4_1:70609657-70609676 | Msa0568970:intron | 30.0% | |
ACATTGGATATATAAGAGAG+GGG | + | chr4_1:70609748-70609767 | Msa0568970:intron | 30.0% | |
! | ATAAAGACCAATGTGTTGTT+GGG | - | chr4_1:70609870-70609889 | None:intergenic | 30.0% |
! | TAAAGACCAATGTGTTGTTA+GGG | - | chr4_1:70609984-70610003 | None:intergenic | 30.0% |
! | ATAAAGACCAATGTGTTGTT+AGG | - | chr4_1:70609870-70609889 | None:intergenic | 30.0% |
ACTTATTAATAGGGGATATG+AGG | + | chr4_1:70610219-70610238 | Msa0568970:intron | 30.0% | |
AATTAAGGAGTGAAGTGATA+AGG | + | chr4_1:70610266-70610285 | Msa0568970:intron | 30.0% | |
ATTAAGGAGTGAAGTGATAA+GGG | + | chr4_1:70610267-70610286 | Msa0568970:intron | 30.0% | |
AAATTCAAACATCCCAAAAG+TGG | + | chr4_1:70610559-70610578 | Msa0568970:intron | 30.0% | |
ATAGTATGCAAGTGTATGTT+TGG | - | chr4_1:70610587-70610606 | None:intergenic | 30.0% | |
TTCCAGTTACATATTCAACA+GGG | - | chr4_1:70610765-70610784 | None:intergenic | 30.0% | |
ATTCCAGTTACATATTCAAC+AGG | - | chr4_1:70610766-70610785 | None:intergenic | 30.0% | |
! | CTAATATAGCTATCAGCTTT+TGG | + | chr4_1:70610798-70610817 | Msa0568970:intron | 30.0% |
ACACATTAGAGGAAGTAATT+GGG | + | chr4_1:70610842-70610861 | Msa0568970:CDS | 30.0% | |
!! | TATGAGTGCACATTTTGTTT+CGG | - | chr4_1:70611059-70611078 | None:intergenic | 30.0% |
AGTTTGAGTGTTAATGACAT+AGG | + | chr4_1:70611109-70611128 | Msa0568970:CDS | 30.0% | |
GTTTGAGTGTTAATGACATA+GGG | + | chr4_1:70611110-70611129 | Msa0568970:CDS | 30.0% | |
! | AGATTCATAGTTGTGCTTTT+TGG | + | chr4_1:70611157-70611176 | Msa0568970:intron | 30.0% |
! | GTATTATGGACTTTTAGATC+AGG | - | chr4_1:70611295-70611314 | None:intergenic | 30.0% |
! | GCTTTTAAATTATGAGCGTT+AGG | + | chr4_1:70611536-70611555 | Msa0568970:intron | 30.0% |
! | TTTTGCATCTGAACATTGAA+GGG | - | chr4_1:70611657-70611676 | None:intergenic | 30.0% |
! | ATTTTGCATCTGAACATTGA+AGG | - | chr4_1:70611658-70611677 | None:intergenic | 30.0% |
GAATAAAGCAATACATACTG+CGG | - | chr4_1:70611765-70611784 | None:intergenic | 30.0% | |
! | GTATGTATTGCTTTATTCCA+AGG | + | chr4_1:70611767-70611786 | Msa0568970:intron | 30.0% |
TATCACATTTCTACATTGGT+CGG | + | chr4_1:70611798-70611817 | Msa0568970:intron | 30.0% | |
ATTAATATCTGGTAGGACTT+TGG | - | chr4_1:70612630-70612649 | None:intergenic | 30.0% | |
ACTAGTACTTCCATCAATAA+AGG | - | chr4_1:70612697-70612716 | None:intergenic | 30.0% | |
TTAATAATATTGTCCGCTGA+AGG | - | chr4_1:70612961-70612980 | None:intergenic | 30.0% | |
GCGGACAATATTATTAAGAT+TGG | + | chr4_1:70612964-70612983 | Msa0568970:three_prime_UTR | 30.0% | |
!! | TTGAGTTTTGTAAATGGCTT+AGG | + | chr4_1:70613194-70613213 | Msa0568970:three_prime_UTR | 30.0% |
CATCACTATACTTACAAACA+AGG | - | chr4_1:70613299-70613318 | None:intergenic | 30.0% | |
AATGGTAGATGTTGTTGGAA+TGG | - | chr4_1:70609092-70609111 | None:intergenic | 35.0% | |
!! | GTGAAAAGCTTTAAGAACAC+GGG | - | chr4_1:70609314-70609333 | None:intergenic | 35.0% |
! | CCTTAAGGCATTAGGTATAT+GGG | - | chr4_1:70609775-70609794 | None:intergenic | 35.0% |
! | ACCTTAAGGCATTAGGTATA+TGG | - | chr4_1:70609776-70609795 | None:intergenic | 35.0% |
! | ACTCAAAACCTTAAGGCATT+AGG | - | chr4_1:70609783-70609802 | None:intergenic | 35.0% |
!!! | TAATGCCTTAAGGTTTTGAG+TGG | + | chr4_1:70609782-70609801 | Msa0568970:intron | 35.0% |
! | TAAAGACCAATGTGTTGTTG+GGG | - | chr4_1:70609869-70609888 | None:intergenic | 35.0% |
CATAAAGACCAATGTGTTGT+TGG | - | chr4_1:70609871-70609890 | None:intergenic | 35.0% | |
CAATCTAAACATGCCCTAAT+TGG | + | chr4_1:70609914-70609933 | Msa0568970:intron | 35.0% | |
CAATCTAAACATGCCCTAAT+TGG | + | chr4_1:70609914-70609933 | Msa0568970:intron | 35.0% | |
ATTAATAGGGGATATGAGGT+TGG | + | chr4_1:70610223-70610242 | Msa0568970:intron | 35.0% | |
TTAAGGAGTGAAGTGATAAG+GGG | + | chr4_1:70610268-70610287 | Msa0568970:intron | 35.0% | |
!! | GTATGTTTGGTTCCACTTTT+GGG | - | chr4_1:70610574-70610593 | None:intergenic | 35.0% |
!! | TGTATGTTTGGTTCCACTTT+TGG | - | chr4_1:70610575-70610594 | None:intergenic | 35.0% |
TTCCCTGTTGAATATGTAAC+TGG | + | chr4_1:70610760-70610779 | Msa0568970:intron | 35.0% | |
ACTTCCTCTAATGTGTCATA+TGG | - | chr4_1:70610838-70610857 | None:intergenic | 35.0% | |
GACACATTAGAGGAAGTAAT+TGG | + | chr4_1:70610841-70610860 | Msa0568970:CDS | 35.0% | |
TAGAGGAAGTAATTGGGAAA+AGG | + | chr4_1:70610848-70610867 | Msa0568970:CDS | 35.0% | |
AGAGGAAGTAATTGGGAAAA+GGG | + | chr4_1:70610849-70610868 | Msa0568970:CDS | 35.0% | |
TTTCACCCCAAAATCTTGAA+GGG | - | chr4_1:70610893-70610912 | None:intergenic | 35.0% | |
ATTTCACCCCAAAATCTTGA+AGG | - | chr4_1:70610894-70610913 | None:intergenic | 35.0% | |
!! | ATGAGTGCACATTTTGTTTC+GGG | - | chr4_1:70611058-70611077 | None:intergenic | 35.0% |
TTAATTCACACAGGTCACAA+TGG | - | chr4_1:70611230-70611249 | None:intergenic | 35.0% | |
! | ACAGGTGAAGATTTTGTGAT+CGG | - | chr4_1:70611624-70611643 | None:intergenic | 35.0% |
TTGAAGGGTAAAAAGGTTAC+AGG | - | chr4_1:70611642-70611661 | None:intergenic | 35.0% | |
CTGAACATTGAAGGGTAAAA+AGG | - | chr4_1:70611649-70611668 | None:intergenic | 35.0% | |
!! | TCATGGTGGATAATTGCTAT+GGG | + | chr4_1:70611691-70611710 | Msa0568970:CDS | 35.0% |
ATATTATCGCATACCACCAT+GGG | - | chr4_1:70611741-70611760 | None:intergenic | 35.0% | |
GCAGTATCACATTTCTACAT+TGG | + | chr4_1:70611794-70611813 | Msa0568970:intron | 35.0% | |
AGTTTGATAAAGAATCCTGG+TGG | + | chr4_1:70611845-70611864 | Msa0568970:CDS | 35.0% | |
TGTTGCTGGGAAAAAGAAAT+TGG | + | chr4_1:70611892-70611911 | Msa0568970:CDS | 35.0% | |
!!! | TATCATGAGAGCCTTTTTTC+AGG | + | chr4_1:70611982-70612001 | Msa0568970:CDS | 35.0% |
!!! | ATCATGAGAGCCTTTTTTCA+GGG | + | chr4_1:70611983-70612002 | Msa0568970:CDS | 35.0% |
TTTCTTTCACCTCAAATGGT+TGG | + | chr4_1:70612010-70612029 | Msa0568970:CDS | 35.0% | |
TTCTTTCACCTCAAATGGTT+GGG | + | chr4_1:70612011-70612030 | Msa0568970:CDS | 35.0% | |
AAACCTGAACTGTATCACAT+CGG | - | chr4_1:70612197-70612216 | None:intergenic | 35.0% | |
TCTAGAAAGAAAGATAGCAC+AGG | - | chr4_1:70612230-70612249 | None:intergenic | 35.0% | |
ATACTGAAAGAAACTCCTAC+GGG | - | chr4_1:70612348-70612367 | None:intergenic | 35.0% | |
CATACTGAAAGAAACTCCTA+CGG | - | chr4_1:70612349-70612368 | None:intergenic | 35.0% | |
AATTGATCTTCAATGCCTGT+AGG | + | chr4_1:70612402-70612421 | Msa0568970:intron | 35.0% | |
! | AATTTGTTTAGGGACTGTGA+AGG | - | chr4_1:70612562-70612581 | None:intergenic | 35.0% |
TCTTTGATATCACTCTTCTC+AGG | + | chr4_1:70612653-70612672 | Msa0568970:intron | 35.0% | |
TCCATCAATAAAGGTTCCAT+CGG | - | chr4_1:70612688-70612707 | None:intergenic | 35.0% | |
!! | TTTGTTTTTCAAATGCAGGG+TGG | + | chr4_1:70612838-70612857 | Msa0568970:intron | 35.0% |
TAGATTTCAGAACTTCTCCT+AGG | - | chr4_1:70612891-70612910 | None:intergenic | 35.0% | |
ACATATTATACGACCTTCAG+CGG | + | chr4_1:70612945-70612964 | Msa0568970:three_prime_UTR | 35.0% | |
GGTACAAATTCAATTAAGGG+TGG | + | chr4_1:70612985-70613004 | Msa0568970:three_prime_UTR | 35.0% | |
! | AGATTTGGTCACTGTTAGTT+CGG | - | chr4_1:70613036-70613055 | None:intergenic | 35.0% |
GGTCAAAACAGTTCTTATCA+TGG | - | chr4_1:70613256-70613275 | None:intergenic | 35.0% | |
!! | GTTTTGACCTTGATAGTATG+TGG | + | chr4_1:70613267-70613286 | Msa0568970:three_prime_UTR | 35.0% |
GTATACACCACATACTATCA+AGG | - | chr4_1:70613277-70613296 | None:intergenic | 35.0% | |
TGCAATGTGTCTCTTTCTTA+TGG | + | chr4_1:70613317-70613336 | Msa0568970:three_prime_UTR | 35.0% | |
!! | GTTAACTTGTGCTGAAAGAA+TGG | + | chr4_1:70613339-70613358 | Msa0568970:three_prime_UTR | 35.0% |
TGTTGGAATGGAGATTCGAA+CGG | - | chr4_1:70609080-70609099 | None:intergenic | 40.0% | |
TAGCGAATGGTAGATGTTGT+TGG | - | chr4_1:70609097-70609116 | None:intergenic | 40.0% | |
!!! | GTTTTGAAGCAGCGAAATCA+TGG | - | chr4_1:70609192-70609211 | None:intergenic | 40.0% |
GAATTCAGAATTCAGAGCAG+TGG | + | chr4_1:70609264-70609283 | Msa0568970:CDS | 40.0% | |
!! | AAAAGCTTTAAGAACACGGG+TGG | - | chr4_1:70609311-70609330 | None:intergenic | 40.0% |
ACAATGAGAATGAGCCTGTT+TGG | - | chr4_1:70609674-70609693 | None:intergenic | 40.0% | |
AGGCTCATTCTCATTGTGTT+GGG | + | chr4_1:70609677-70609696 | Msa0568970:intron | 40.0% | |
! | GATTATATCCCACATCGACT+AGG | + | chr4_1:70609715-70609734 | Msa0568970:intron | 40.0% |
ACTAGGAATGGAGGAAACAT+TGG | + | chr4_1:70609732-70609751 | Msa0568970:intron | 40.0% | |
CCCATATACCTAATGCCTTA+AGG | + | chr4_1:70609772-70609791 | Msa0568970:intron | 40.0% | |
CATCTCCACTCAAAACCTTA+AGG | - | chr4_1:70609790-70609809 | None:intergenic | 40.0% | |
!!! | TAAGGTTTTGAGTGGAGATG+TGG | + | chr4_1:70609790-70609809 | Msa0568970:intron | 40.0% |
GATGTGGTGTCTAAGTTTCT+TGG | + | chr4_1:70609806-70609825 | Msa0568970:intron | 40.0% | |
TGTTAATGCTGTCAGCACTT+TGG | + | chr4_1:70610058-70610077 | Msa0568970:intron | 40.0% | |
GTTATGGTCATGATGAAGCT+GGG | + | chr4_1:70610092-70610111 | Msa0568970:intron | 40.0% | |
TTATGGTCATGATGAAGCTG+GGG | + | chr4_1:70610093-70610112 | Msa0568970:intron | 40.0% | |
CAACAATTTCTGCAAAAGCC+TGG | - | chr4_1:70610135-70610154 | None:intergenic | 40.0% | |
! | CAGGCTTTTGCAGAAATTGT+TGG | + | chr4_1:70610133-70610152 | Msa0568970:CDS | 40.0% |
ATCAGCTATTGTTCGTTCAC+AGG | + | chr4_1:70610162-70610181 | Msa0568970:CDS | 40.0% | |
AGTATTATATGCTGGGAGTG+TGG | - | chr4_1:70610307-70610326 | None:intergenic | 40.0% | |
ACTTGTCAACAGTTCTTCTC+AGG | + | chr4_1:70610611-70610630 | Msa0568970:intron | 40.0% | |
GGCAAATAAAGCACATGTGA+TGG | - | chr4_1:70610645-70610664 | None:intergenic | 40.0% | |
CAACTATAGAGCTATACTGC+TGG | - | chr4_1:70610732-70610751 | None:intergenic | 40.0% | |
TGCTCCATATGACACATTAG+AGG | + | chr4_1:70610831-70610850 | Msa0568970:CDS | 40.0% | |
! | TTGGGTTCCCTTCAAGATTT+TGG | + | chr4_1:70610883-70610902 | Msa0568970:CDS | 40.0% |
! | TGGGTTCCCTTCAAGATTTT+GGG | + | chr4_1:70610884-70610903 | Msa0568970:CDS | 40.0% |
!!! | ATTTTTTCATCAGCTTGCCG+AGG | + | chr4_1:70610991-70611010 | Msa0568970:intron | 40.0% |
CAAAATGTGCACTCATACAG+AGG | + | chr4_1:70611062-70611081 | Msa0568970:CDS | 40.0% | |
AGAGGTCATGTGGTTATTCA+TGG | + | chr4_1:70611080-70611099 | Msa0568970:CDS | 40.0% | |
!!! | TACAGCAGTCTTGTTTTGCA+TGG | + | chr4_1:70611404-70611423 | Msa0568970:intron | 40.0% |
AGGTCACAAAAGGAATCAGT+TGG | - | chr4_1:70611475-70611494 | None:intergenic | 40.0% | |
GATGCAAAATCCTGAGTGTT+CGG | + | chr4_1:70611668-70611687 | Msa0568970:intron | 40.0% | |
!! | GTCATGGTGGATAATTGCTA+TGG | + | chr4_1:70611690-70611709 | Msa0568970:CDS | 40.0% |
!! | CATGGTGGATAATTGCTATG+GGG | + | chr4_1:70611692-70611711 | Msa0568970:CDS | 40.0% |
TAATTGCTATGGGGAACTTG+TGG | + | chr4_1:70611701-70611720 | Msa0568970:CDS | 40.0% | |
CATATTATCGCATACCACCA+TGG | - | chr4_1:70611742-70611761 | None:intergenic | 40.0% | |
AATGTGATACTGCACATCCT+TGG | - | chr4_1:70611787-70611806 | None:intergenic | 40.0% | |
GGCAGTTTGATAAAGAATCC+TGG | + | chr4_1:70611842-70611861 | Msa0568970:CDS | 40.0% | |
AAAGGCTCTCATGATATCAC+CGG | - | chr4_1:70611978-70611997 | None:intergenic | 40.0% | |
TCTTTCACCTCAAATGGTTG+GGG | + | chr4_1:70612012-70612031 | Msa0568970:CDS | 40.0% | |
AACCTGAACTGTATCACATC+GGG | - | chr4_1:70612196-70612215 | None:intergenic | 40.0% | |
!! | TGGCAGCGAAATTTTGTTTC+TGG | + | chr4_1:70612287-70612306 | Msa0568970:intron | 40.0% |
!! | TGTTTCTGGTAGAAAAGCTG+TGG | + | chr4_1:70612301-70612320 | Msa0568970:intron | 40.0% |
! | TAGAAAAGCTGTGGTTGATG+TGG | + | chr4_1:70612310-70612329 | Msa0568970:intron | 40.0% |
! | AGAAAAGCTGTGGTTGATGT+GGG | + | chr4_1:70612311-70612330 | Msa0568970:intron | 40.0% |
GTCATACACCAAACCAATTG+CGG | + | chr4_1:70612495-70612514 | Msa0568970:CDS | 40.0% | |
TCATACACCAAACCAATTGC+GGG | + | chr4_1:70612496-70612515 | Msa0568970:CDS | 40.0% | |
ACTAGTGAGCTTTCATGTGA+TGG | + | chr4_1:70612711-70612730 | Msa0568970:CDS | 40.0% | |
ACAGCAAATGGCTCTCTAAA+AGG | - | chr4_1:70612738-70612757 | None:intergenic | 40.0% | |
GTCACTGTTAGTTCGGATTT+CGG | - | chr4_1:70613029-70613048 | None:intergenic | 40.0% | |
!!! | GGGTGAGTTGATGTAGATTT+TGG | + | chr4_1:70613064-70613083 | Msa0568970:three_prime_UTR | 40.0% |
ATGCGTAGGATAAGCAGAGA+AGG | - | chr4_1:70609056-70609075 | None:intergenic | 45.0% | |
GTTGGAATGGAGATTCGAAC+GGG | - | chr4_1:70609079-70609098 | None:intergenic | 45.0% | |
! | TCTGGAACGAAGGGATTGAT+AGG | - | chr4_1:70609139-70609158 | None:intergenic | 45.0% |
TATCAATCCCTTCGTTCCAG+AGG | + | chr4_1:70609138-70609157 | Msa0568970:CDS | 45.0% | |
! | GCTTTTCACAATGCTCGACT+TGG | + | chr4_1:70609325-70609344 | Msa0568970:CDS | 45.0% |
CAGGCTCATTCTCATTGTGT+TGG | + | chr4_1:70609676-70609695 | Msa0568970:intron | 45.0% | |
! | TATCCCACATCGACTAGGAA+TGG | + | chr4_1:70609720-70609739 | Msa0568970:intron | 45.0% |
GTGGTGTCTAAGTTTCTTGG+TGG | + | chr4_1:70609809-70609828 | Msa0568970:intron | 45.0% | |
! | AATGTGTTGTTAGGGAGTCC+GGG | - | chr4_1:70609976-70609995 | None:intergenic | 45.0% |
! | CAATGTGTTGTTAGGGAGTC+CGG | - | chr4_1:70609977-70609996 | None:intergenic | 45.0% |
TAATGCTGTCAGCACTTTGG+TGG | + | chr4_1:70610061-70610080 | Msa0568970:intron | 45.0% | |
!! | TTTGGTGGTTGCACTGGTTA+TGG | + | chr4_1:70610076-70610095 | Msa0568970:intron | 45.0% |
GGTTATGGTCATGATGAAGC+TGG | + | chr4_1:70610091-70610110 | Msa0568970:intron | 45.0% | |
TATGGTCATGATGAAGCTGG+GGG | + | chr4_1:70610094-70610113 | Msa0568970:intron | 45.0% | |
! | TAGGGGATATGAGGTTGGTT+TGG | + | chr4_1:70610228-70610247 | Msa0568970:intron | 45.0% |
!! | TTGGTTTGGTGGCTGAAGTA+GGG | + | chr4_1:70610242-70610261 | Msa0568970:intron | 45.0% |
TGGCTGAAGTAGGGGAATTA+AGG | + | chr4_1:70610251-70610270 | Msa0568970:intron | 45.0% | |
AGTGAAGTGATAAGGGGTTG+AGG | + | chr4_1:70610274-70610293 | Msa0568970:intron | 45.0% | |
GTGAAGTGATAAGGGGTTGA+GGG | + | chr4_1:70610275-70610294 | Msa0568970:intron | 45.0% | |
!! | GTGCTTTATTTGCCCTCTTG+AGG | + | chr4_1:70610651-70610670 | Msa0568970:intron | 45.0% |
AAAAGGGTTACCTCATCTCC+TGG | - | chr4_1:70610677-70610696 | None:intergenic | 45.0% | |
! | TATCAGCTTTTGGCAGTTGC+TGG | + | chr4_1:70610808-70610827 | Msa0568970:intron | 45.0% |
GTAATTGGGAAAAGGGACTC+TGG | + | chr4_1:70610856-70610875 | Msa0568970:CDS | 45.0% | |
AAAAGGGACTCTGGTGGTTT+GGG | + | chr4_1:70610865-70610884 | Msa0568970:CDS | 45.0% | |
! | GGGTTCCCTTCAAGATTTTG+GGG | + | chr4_1:70610885-70610904 | Msa0568970:CDS | 45.0% |
GGTGAAATACCGAGAAGTTC+CGG | + | chr4_1:70610906-70610925 | Msa0568970:CDS | 45.0% | |
AGTAGCATACCGGAACTTCT+CGG | - | chr4_1:70610918-70610937 | None:intergenic | 45.0% | |
CTGCTGTAGAGAGTTATCAG+TGG | - | chr4_1:70611392-70611411 | None:intergenic | 45.0% | |
AAATCCTGAGTGTTCGGTCA+TGG | + | chr4_1:70611674-70611693 | Msa0568970:CDS | 45.0% | |
ACATTTCTACATTGGTCGGC+AGG | + | chr4_1:70611802-70611821 | Msa0568970:intron | 45.0% | |
CATTTCTACATTGGTCGGCA+GGG | + | chr4_1:70611803-70611822 | Msa0568970:intron | 45.0% | |
AAGGCTCTCATGATATCACC+GGG | - | chr4_1:70611977-70611996 | None:intergenic | 45.0% | |
ATTGCTTCCCCAACCATTTG+AGG | - | chr4_1:70612022-70612041 | None:intergenic | 45.0% | |
AATGGTTGGGGAAGCAATCA+AGG | + | chr4_1:70612024-70612043 | Msa0568970:CDS | 45.0% | |
CAGAACTTCAGCAATCAGGA+AGG | - | chr4_1:70612133-70612152 | None:intergenic | 45.0% | |
CTTCCTGATTGCTGAAGTTC+TGG | + | chr4_1:70612131-70612150 | Msa0568970:CDS | 45.0% | |
ATGCCAGAACTTCAGCAATC+AGG | - | chr4_1:70612137-70612156 | None:intergenic | 45.0% | |
! | TGCTGAAGTTCTGGCATCTA+AGG | + | chr4_1:70612140-70612159 | Msa0568970:CDS | 45.0% |
! | GCTGAAGTTCTGGCATCTAA+GGG | + | chr4_1:70612141-70612160 | Msa0568970:CDS | 45.0% |
ACCTGAACTGTATCACATCG+GGG | - | chr4_1:70612195-70612214 | None:intergenic | 45.0% | |
TGGGCAAAAATTTGTCCCGT+AGG | + | chr4_1:70612330-70612349 | Msa0568970:intron | 45.0% | |
AAAAAGCAAGGAGACGCTCA+CGG | - | chr4_1:70612444-70612463 | None:intergenic | 45.0% | |
GAACAGCCTCACAAAAAGCA+AGG | - | chr4_1:70612456-70612475 | None:intergenic | 45.0% | |
TCTCAGGTTATCTTTGCCGA+TGG | + | chr4_1:70612669-70612688 | Msa0568970:intron | 45.0% | |
GCCGATGGAACCTTTATTGA+TGG | + | chr4_1:70612684-70612703 | Msa0568970:CDS | 45.0% | |
!!! | GCCATTTGCTGTATTTTGCC+AGG | + | chr4_1:70612746-70612765 | Msa0568970:CDS | 45.0% |
GCCTGGCAAAATACAGCAAA+TGG | - | chr4_1:70612750-70612769 | None:intergenic | 45.0% | |
! | CTGTATTTTGCCAGGCATGT+TGG | + | chr4_1:70612754-70612773 | Msa0568970:intron | 45.0% |
TGATGCAAAACCAACATGCC+TGG | - | chr4_1:70612767-70612786 | None:intergenic | 45.0% | |
TGGCACTCATTGGACTCAAT+GGG | + | chr4_1:70612858-70612877 | Msa0568970:CDS | 45.0% | |
GATAGGAACAGAGAAGCGAG+AGG | - | chr4_1:70609122-70609141 | None:intergenic | 50.0% | |
CCTCCATTCCTAGTCGATGT+GGG | - | chr4_1:70609726-70609745 | None:intergenic | 50.0% | |
TCCTCCATTCCTAGTCGATG+TGG | - | chr4_1:70609727-70609746 | None:intergenic | 50.0% | |
! | CAATGTGTTGTTGGGGAGTC+CGG | - | chr4_1:70609862-70609881 | None:intergenic | 50.0% |
! | ATGTGTTGTTAGGGAGTCCG+GGG | - | chr4_1:70609975-70609994 | None:intergenic | 50.0% |
CGGACTCCCTAACAACACAT+TGG | + | chr4_1:70609975-70609994 | Msa0568970:intron | 50.0% | |
!! | GGGATATGAGGTTGGTTTGG+TGG | + | chr4_1:70610231-70610250 | Msa0568970:intron | 50.0% |
!! | GTTGGTTTGGTGGCTGAAGT+AGG | + | chr4_1:70610241-70610260 | Msa0568970:intron | 50.0% |
!! | TGGTTTGGTGGCTGAAGTAG+GGG | + | chr4_1:70610243-70610262 | Msa0568970:intron | 50.0% |
TTATTTGCCCTCTTGAGGCC+AGG | + | chr4_1:70610656-70610675 | Msa0568970:intron | 50.0% | |
ATTGGGAAAAGGGACTCTGG+TGG | + | chr4_1:70610859-70610878 | Msa0568970:CDS | 50.0% | |
GAAAAGGGACTCTGGTGGTT+TGG | + | chr4_1:70610864-70610883 | Msa0568970:CDS | 50.0% | |
TTTCATCAGCTTGCCGAGGA+TGG | + | chr4_1:70610995-70611014 | Msa0568970:intron | 50.0% | |
GCACTCATACAGAGGTCATG+TGG | + | chr4_1:70611070-70611089 | Msa0568970:CDS | 50.0% | |
TGCTATGGGGAACTTGTGGA+AGG | + | chr4_1:70611705-70611724 | Msa0568970:CDS | 50.0% | |
TTATCGCATACCACCATGGG+AGG | - | chr4_1:70611738-70611757 | None:intergenic | 50.0% | |
!! | CATGTGGCGGATATGTTGCT+GGG | + | chr4_1:70611879-70611898 | Msa0568970:CDS | 50.0% |
! | GTGGATTGTGGTTCAACTCC+CGG | + | chr4_1:70611956-70611975 | Msa0568970:CDS | 50.0% |
CCTGAACTGTATCACATCGG+GGG | - | chr4_1:70612194-70612213 | None:intergenic | 50.0% | |
TTCCAAGTTGTACGGCCTAC+AGG | - | chr4_1:70612420-70612439 | None:intergenic | 50.0% | |
CTCACGGCTTCCAAGTTGTA+CGG | - | chr4_1:70612428-70612447 | None:intergenic | 50.0% | |
!!! | GCGTCTCCTTGCTTTTTGTG+AGG | + | chr4_1:70612447-70612466 | Msa0568970:CDS | 50.0% |
TGTTCAGAGAAGCTCTCCTG+TGG | + | chr4_1:70612471-70612490 | Msa0568970:CDS | 50.0% | |
GTTCAGAGAAGCTCTCCTGT+GGG | + | chr4_1:70612472-70612491 | Msa0568970:CDS | 50.0% | |
TTCAGAGAAGCTCTCCTGTG+GGG | + | chr4_1:70612473-70612492 | Msa0568970:CDS | 50.0% | |
AGTGGTACCCGCAATTGGTT+TGG | - | chr4_1:70612506-70612525 | None:intergenic | 50.0% | |
CTCTGATGCATATCCAGGAG+TGG | - | chr4_1:70612524-70612543 | None:intergenic | 50.0% | |
CACTCCTGGATATGCATCAG+AGG | + | chr4_1:70612522-70612541 | Msa0568970:CDS | 50.0% | |
CAGACCTCTGATGCATATCC+AGG | - | chr4_1:70612529-70612548 | None:intergenic | 50.0% | |
AAATGCAGGGTGGCACTCAT+TGG | + | chr4_1:70612848-70612867 | Msa0568970:intron | 50.0% | |
GTGGCACTCATTGGACTCAA+TGG | + | chr4_1:70612857-70612876 | Msa0568970:CDS | 50.0% | |
GGCACTCATTGGACTCAATG+GGG | + | chr4_1:70612859-70612878 | Msa0568970:CDS | 50.0% | |
!! | ACTCAATGGGGACTAGTCCT+AGG | + | chr4_1:70612871-70612890 | Msa0568970:CDS | 50.0% |
AGTGACCAAATCTCGTGCAG+CGG | + | chr4_1:70613043-70613062 | Msa0568970:three_prime_UTR | 50.0% | |
! | AGGATAAGCAGAGAAGGCGC+AGG | - | chr4_1:70609050-70609069 | None:intergenic | 55.0% |
GAGATTCGAACGGGATGCGT+AGG | - | chr4_1:70609070-70609089 | None:intergenic | 55.0% | |
! | GAAGCGAGAGGCATAGCGAA+TGG | - | chr4_1:70609110-70609129 | None:intergenic | 55.0% |
!! | GCGAGTACCTCTGGAACGAA+GGG | - | chr4_1:70609148-70609167 | None:intergenic | 55.0% |
!! | AGCGAGTACCTCTGGAACGA+AGG | - | chr4_1:70609149-70609168 | None:intergenic | 55.0% |
GAAGAGTGAGCGAGTACCTC+TGG | - | chr4_1:70609157-70609176 | None:intergenic | 55.0% | |
! | CCCACATCGACTAGGAATGG+AGG | + | chr4_1:70609723-70609742 | Msa0568970:intron | 55.0% |
!! | CGGCAATGGGCTAAACGTTC+AGG | - | chr4_1:70609836-70609855 | None:intergenic | 55.0% |
GTTTAGCCCATTGCCGTCTC+CGG | + | chr4_1:70609840-70609859 | Msa0568970:intron | 55.0% | |
CGGACTCCCCAACAACACAT+TGG | + | chr4_1:70609860-70609879 | Msa0568970:intron | 55.0% | |
TTTAACCCATTGCCGCTCCC+CGG | + | chr4_1:70609955-70609974 | Msa0568970:intron | 55.0% | |
! | CAGCACTTTGGTGGTTGCAC+TGG | + | chr4_1:70610070-70610089 | Msa0568970:intron | 55.0% |
CTCATCTCCTGGCCTCAAGA+GGG | - | chr4_1:70610666-70610685 | None:intergenic | 55.0% | |
CCAGTCAAGTCCACCATCCT+CGG | - | chr4_1:70611011-70611030 | None:intergenic | 55.0% | |
TCCTGAGTGTTCGGTCATGG+TGG | + | chr4_1:70611677-70611696 | Msa0568970:CDS | 55.0% | |
TCCACCATGACCGAACACTC+AGG | - | chr4_1:70611681-70611700 | None:intergenic | 55.0% | |
!! | GGAAGGCATTGAACCTCCCA+TGG | + | chr4_1:70611722-70611741 | Msa0568970:CDS | 55.0% |
!! | AGGCATTGAACCTCCCATGG+TGG | + | chr4_1:70611725-70611744 | Msa0568970:CDS | 55.0% |
TCGGCAGGGTGCAGATTTGA+TGG | + | chr4_1:70611817-70611836 | Msa0568970:intron | 55.0% | |
! | CAGGGTGCAGATTTGATGGC+AGG | + | chr4_1:70611821-70611840 | Msa0568970:intron | 55.0% |
CATGGAGCAATCGTTCCACC+AGG | - | chr4_1:70611863-70611882 | None:intergenic | 55.0% | |
GGTGGAACGATTGCTCCATG+TGG | + | chr4_1:70611863-70611882 | Msa0568970:CDS | 55.0% | |
GGAACGATTGCTCCATGTGG+CGG | + | chr4_1:70611866-70611885 | Msa0568970:CDS | 55.0% | |
CCAGCAACATATCCGCCACA+TGG | - | chr4_1:70611881-70611900 | None:intergenic | 55.0% | |
!! | CCATGTGGCGGATATGTTGC+TGG | + | chr4_1:70611878-70611897 | Msa0568970:CDS | 55.0% |
ACCACAATCCACACCAAGCC+CGG | - | chr4_1:70611948-70611967 | None:intergenic | 55.0% | |
CCCCCGATGTGATACAGTTC+AGG | + | chr4_1:70612191-70612210 | Msa0568970:CDS | 55.0% | |
TGCCTGTAGGCCGTACAACT+TGG | + | chr4_1:70612415-70612434 | Msa0568970:intron | 55.0% | |
!! | GGTTTGGTGTATGACCCCAC+AGG | - | chr4_1:70612490-70612509 | None:intergenic | 55.0% |
GTGACCAAATCTCGTGCAGC+GGG | + | chr4_1:70613044-70613063 | Msa0568970:three_prime_UTR | 55.0% | |
GTTGTTGGGGAGTCCGGAGA+CGG | - | chr4_1:70609856-70609875 | None:intergenic | 60.0% | |
TTGTTAGGGAGTCCGGGGAG+CGG | - | chr4_1:70609970-70609989 | None:intergenic | 60.0% | |
GGGACGTGAAGCTCTTGACC+AGG | + | chr4_1:70610114-70610133 | Msa0568970:CDS | 60.0% | |
CCTCATCTCCTGGCCTCAAG+AGG | - | chr4_1:70610667-70610686 | None:intergenic | 60.0% | |
CCTCTTGAGGCCAGGAGATG+AGG | + | chr4_1:70610664-70610683 | Msa0568970:intron | 60.0% | |
CATCAGCTTGCCGAGGATGG+TGG | + | chr4_1:70610998-70611017 | Msa0568970:intron | 60.0% | |
!! | CCGAGGATGGTGGACTTGAC+TGG | + | chr4_1:70611008-70611027 | Msa0568970:CDS | 60.0% |
CCACAATCCACACCAAGCCC+GGG | - | chr4_1:70611947-70611966 | None:intergenic | 60.0% | |
TATCACATCGGGGGACGCGA+GGG | - | chr4_1:70612185-70612204 | None:intergenic | 60.0% | |
CCAGGAGTGGTACCCGCAAT+TGG | - | chr4_1:70612511-70612530 | None:intergenic | 60.0% | |
CCAATTGCGGGTACCACTCC+TGG | + | chr4_1:70612508-70612527 | Msa0568970:CDS | 60.0% | |
CTCACCCGCTGCACGAGATT+TGG | - | chr4_1:70613051-70613070 | None:intergenic | 60.0% | |
GGGAGTCCGGAGACGGCAAT+GGG | - | chr4_1:70609849-70609868 | None:intergenic | 65.0% | |
!! | CCCGGGCTTGGTGTGGATTG+TGG | + | chr4_1:70611944-70611963 | Msa0568970:CDS | 65.0% |
GTATCACATCGGGGGACGCG+AGG | - | chr4_1:70612186-70612205 | None:intergenic | 65.0% | |
GGGGAGTCCGGAGACGGCAA+TGG | - | chr4_1:70609850-70609869 | None:intergenic | 70.0% | |
GGAGTCCGGGGAGCGGCAAT+GGG | - | chr4_1:70609963-70609982 | None:intergenic | 70.0% | |
CACCAAGCCCGGGCGCAGAA+AGG | - | chr4_1:70611937-70611956 | None:intergenic | 70.0% | |
!! | TTCTGCGCCCGGGCTTGGTG+TGG | + | chr4_1:70611937-70611956 | Msa0568970:CDS | 70.0% |
GGGAGTCCGGGGAGCGGCAA+TGG | - | chr4_1:70609964-70609983 | None:intergenic | 75.0% | |
GCAGCGCGCCTTTCTGCGCC+CGG | + | chr4_1:70611926-70611945 | Msa0568970:CDS | 75.0% | |
CAGCGCGCCTTTCTGCGCCC+GGG | + | chr4_1:70611927-70611946 | Msa0568970:CDS | 75.0% | |
CGCCTTTCTGCGCCCGGGCT+TGG | + | chr4_1:70611932-70611951 | Msa0568970:CDS | 75.0% | |
CATCGGGGGACGCGAGGGAG+TGG | - | chr4_1:70612180-70612199 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 70608974 | 70613363 | 70608974 | ID=Msa0568970;Name=Msa0568970 |
chr4_1 | mRNA | 70608974 | 70613363 | 70608974 | ID=Msa0568970-mRNA-1;Parent=Msa0568970;Name=Msa0568970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.7|0.63|1|1|0.90|11|428|441 |
chr4_1 | exon | 70608974 | 70609159 | 70608974 | ID=Msa0568970-mRNA-1:exon:23851;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70609241 | 70609358 | 70609241 | ID=Msa0568970-mRNA-1:exon:23852;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70610110 | 70610183 | 70610110 | ID=Msa0568970-mRNA-1:exon:23853;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70610814 | 70610927 | 70610814 | ID=Msa0568970-mRNA-1:exon:23854;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70611004 | 70611153 | 70611004 | ID=Msa0568970-mRNA-1:exon:23855;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70611669 | 70611746 | 70611669 | ID=Msa0568970-mRNA-1:exon:23856;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70611824 | 70612045 | 70611824 | ID=Msa0568970-mRNA-1:exon:23857;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70612126 | 70612212 | 70612126 | ID=Msa0568970-mRNA-1:exon:23858;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70612424 | 70612543 | 70612424 | ID=Msa0568970-mRNA-1:exon:23859;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70612675 | 70612771 | 70612675 | ID=Msa0568970-mRNA-1:exon:23860;Parent=Msa0568970-mRNA-1 |
chr4_1 | exon | 70612856 | 70613363 | 70612856 | ID=Msa0568970-mRNA-1:exon:23861;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70608974 | 70609159 | 70608974 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70609241 | 70609358 | 70609241 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70610110 | 70610183 | 70610110 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70610814 | 70610927 | 70610814 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70611004 | 70611153 | 70611004 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70611669 | 70611746 | 70611669 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70611824 | 70612045 | 70611824 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70612126 | 70612212 | 70612126 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70612424 | 70612543 | 70612424 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70612675 | 70612771 | 70612675 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | CDS | 70612856 | 70612935 | 70612856 | ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1 |
chr4_1 | three_prime_UTR | 70612936 | 70613363 | 70612936 | ID=Msa0568970-mRNA-1:three_prime_utr;Parent=Msa0568970-mRNA-1 |
Gene Sequence |
Protein sequence |