AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568970 MtrunA17_Chr8g0383951 90.233 430 10 2 21 418 1 430 0.0 773
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 142 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTTCCCTTCAAGATTT+TGG 0.069730 4_1:+70610883 Msa0568970:CDS
GATTGGTACAAATTCAATTA+AGG 0.200850 4_1:+70612981 Msa0568970:three_prime_UTR
CGCCTTTCTGCGCCCGGGCT+TGG 0.209663 4_1:+70611932 Msa0568970:CDS
TGCTGAAGTTCTGGCATCTA+AGG 0.222981 4_1:+70612140 Msa0568970:CDS
CTTCCTGATTGCTGAAGTTC+TGG 0.223414 4_1:+70612131 Msa0568970:CDS
AAAAGGGACTCTGGTGGTTT+GGG 0.240265 4_1:+70610865 Msa0568970:CDS
GACACATTAGAGGAAGTAAT+TGG 0.241899 4_1:+70610841 Msa0568970:CDS
GAAAAGGGACTCTGGTGGTT+TGG 0.264666 4_1:+70610864 Msa0568970:CDS
TGCAATGTGTCTCTTTCTTA+TGG 0.272210 4_1:+70613317 Msa0568970:three_prime_UTR
GGGTGAGTTGATGTAGATTT+TGG 0.281925 4_1:+70613064 Msa0568970:three_prime_UTR
TTCTTTCACCTCAAATGGTT+GGG 0.316414 4_1:+70612011 Msa0568970:CDS
CTCACCCGCTGCACGAGATT+TGG 0.332656 4_1:-70613048 None:intergenic
GTCACTGTTAGTTCGGATTT+CGG 0.342424 4_1:-70613026 None:intergenic
ATTGGTACAAATTCAATTAA+GGG 0.353441 4_1:+70612982 Msa0568970:three_prime_UTR
CCATGTGGCGGATATGTTGC+TGG 0.367862 4_1:+70611878 Msa0568970:CDS
GCCGATGGAACCTTTATTGA+TGG 0.368807 4_1:+70612684 Msa0568970:CDS
GCGGACAATATTATTAAGAT+TGG 0.371580 4_1:+70612964 Msa0568970:three_prime_UTR
ACAGCAAATGGCTCTCTAAA+AGG 0.374402 4_1:-70612735 None:intergenic
GCAGCGCGCCTTTCTGCGCC+CGG 0.376005 4_1:+70611926 Msa0568970:CDS
ATTATTTCTTTCACCTCAAA+TGG 0.379919 4_1:+70612006 Msa0568970:CDS
CCGAGGATGGTGGACTTGAC+TGG 0.385164 4_1:+70611008 Msa0568970:CDS
CCAATTGCGGGTACCACTCC+TGG 0.392343 4_1:+70612508 Msa0568970:CDS
ACTTCCTCTAATGTGTCATA+TGG 0.402174 4_1:-70610835 None:intergenic
ACTAGTACTTCCATCAATAA+AGG 0.405469 4_1:-70612694 None:intergenic
AAATGCAGGGTGGCACTCAT+TGG 0.408594 4_1:+70612848 Msa0568970:intron
ATTGCTTCCCCAACCATTTG+AGG 0.410807 4_1:-70612019 None:intergenic
TCGGCAGGGTGCAGATTTGA+TGG 0.424522 4_1:+70611817 Msa0568970:intron
ACCACAATCCACACCAAGCC+CGG 0.425545 4_1:-70611945 None:intergenic
TAGAGGAAGTAATTGGGAAA+AGG 0.426036 4_1:+70610848 Msa0568970:CDS
TGGCACTCATTGGACTCAAT+GGG 0.438629 4_1:+70612858 Msa0568970:CDS
GGTCAAAACAGTTCTTATCA+TGG 0.438849 4_1:-70613253 None:intergenic
AGAGGTCATGTGGTTATTCA+TGG 0.439010 4_1:+70611080 Msa0568970:CDS
AGTGGTACCCGCAATTGGTT+TGG 0.441177 4_1:-70612503 None:intergenic
ATCAGCTATTGTTCGTTCAC+AGG 0.442751 4_1:+70610162 Msa0568970:CDS
GTGGCACTCATTGGACTCAA+TGG 0.444697 4_1:+70612857 Msa0568970:CDS
AACCTGAACTGTATCACATC+GGG 0.445399 4_1:-70612193 None:intergenic
ATGCCAGAACTTCAGCAATC+AGG 0.447778 4_1:-70612134 None:intergenic
AGATTTGGTCACTGTTAGTT+CGG 0.448723 4_1:-70613033 None:intergenic
GGTGAAATACCGAGAAGTTC+CGG 0.451794 4_1:+70610906 Msa0568970:CDS
CCAGGAGTGGTACCCGCAAT+TGG 0.455539 4_1:-70612508 None:intergenic
CAGCGCGCCTTTCTGCGCCC+GGG 0.457346 4_1:+70611927 Msa0568970:CDS
AGAGGAAGTAATTGGGAAAA+GGG 0.458354 4_1:+70610849 Msa0568970:CDS
GCCTGGCAAAATACAGCAAA+TGG 0.460230 4_1:-70612747 None:intergenic
TTTCTTTCACCTCAAATGGT+TGG 0.466714 4_1:+70612010 Msa0568970:CDS
TCATACACCAAACCAATTGC+GGG 0.468084 4_1:+70612496 Msa0568970:CDS
TTCTGCGCCCGGGCTTGGTG+TGG 0.471332 4_1:+70611937 Msa0568970:CDS
CAGACCTCTGATGCATATCC+AGG 0.477506 4_1:-70612526 None:intergenic
TCTGGAACGAAGGGATTGAT+AGG 0.478948 4_1:-70609136 None:intergenic
TGCCTGTAGGCCGTACAACT+TGG 0.486168 4_1:+70612415 Msa0568970:intron
CACCAAGCCCGGGCGCAGAA+AGG 0.488183 4_1:-70611934 None:intergenic
AGTTTGAGTGTTAATGACAT+AGG 0.488359 4_1:+70611109 Msa0568970:CDS
TAGCGAATGGTAGATGTTGT+TGG 0.491205 4_1:-70609094 None:intergenic
TGCTCCATATGACACATTAG+AGG 0.492829 4_1:+70610831 Msa0568970:CDS
CAGGGTGCAGATTTGATGGC+AGG 0.495304 4_1:+70611821 Msa0568970:intron
GATGCAAAATCCTGAGTGTT+CGG 0.498240 4_1:+70611668 Msa0568970:intron
ATTTCACCCCAAAATCTTGA+AGG 0.501972 4_1:-70610891 None:intergenic
TTTCATCAGCTTGCCGAGGA+TGG 0.507265 4_1:+70610995 Msa0568970:intron
AATGGTTGGGGAAGCAATCA+AGG 0.508889 4_1:+70612024 Msa0568970:CDS
TGTTCAGAGAAGCTCTCCTG+TGG 0.510171 4_1:+70612471 Msa0568970:CDS
CATCAGCTTGCCGAGGATGG+TGG 0.516636 4_1:+70610998 Msa0568970:intron
GTCATGGTGGATAATTGCTA+TGG 0.519956 4_1:+70611690 Msa0568970:CDS
TAGATTTCAGAACTTCTCCT+AGG 0.521668 4_1:-70612888 None:intergenic
GTTTGAGTGTTAATGACATA+GGG 0.522137 4_1:+70611110 Msa0568970:CDS
GTTCAGAGAAGCTCTCCTGT+GGG 0.522769 4_1:+70612472 Msa0568970:CDS
AGCGAGTACCTCTGGAACGA+AGG 0.525027 4_1:-70609146 None:intergenic
GTTAACTTGTGCTGAAAGAA+TGG 0.526680 4_1:+70613339 Msa0568970:three_prime_UTR
ACACATTAGAGGAAGTAATT+GGG 0.527457 4_1:+70610842 Msa0568970:CDS
CCAGTCAAGTCCACCATCCT+CGG 0.529194 4_1:-70611008 None:intergenic
TCTCAGGTTATCTTTGCCGA+TGG 0.530646 4_1:+70612669 Msa0568970:intron
TCTTTCACCTCAAATGGTTG+GGG 0.531494 4_1:+70612012 Msa0568970:CDS
AAAGGCTCTCATGATATCAC+CGG 0.531537 4_1:-70611975 None:intergenic
CCCGGGCTTGGTGTGGATTG+TGG 0.531980 4_1:+70611944 Msa0568970:CDS
ACTCAATGGGGACTAGTCCT+AGG 0.534013 4_1:+70612871 Msa0568970:CDS
GTGACCAAATCTCGTGCAGC+GGG 0.534283 4_1:+70613044 Msa0568970:three_prime_UTR
GTGGATTGTGGTTCAACTCC+CGG 0.534401 4_1:+70611956 Msa0568970:CDS
TCATGGTGGATAATTGCTAT+GGG 0.535135 4_1:+70611691 Msa0568970:CDS
CAACAATTTCTGCAAAAGCC+TGG 0.536674 4_1:-70610132 None:intergenic
AAGTTCTGAAATCTATATGA+TGG 0.540257 4_1:+70612896 Msa0568970:CDS
CAAAATGTGCACTCATACAG+AGG 0.542723 4_1:+70611062 Msa0568970:CDS
AGTAGCATACCGGAACTTCT+CGG 0.544340 4_1:-70610915 None:intergenic
GAGATTCGAACGGGATGCGT+AGG 0.544625 4_1:-70609067 None:intergenic
GTCATACACCAAACCAATTG+CGG 0.548656 4_1:+70612495 Msa0568970:CDS
CCACAATCCACACCAAGCCC+GGG 0.549428 4_1:-70611944 None:intergenic
GCTGAAGTTCTGGCATCTAA+GGG 0.550000 4_1:+70612141 Msa0568970:CDS
ACTAGTGAGCTTTCATGTGA+TGG 0.559350 4_1:+70612711 Msa0568970:CDS
TTAATAATATTGTCCGCTGA+AGG 0.559995 4_1:-70612958 None:intergenic
TTCTGAATTCAATGCATCAA+CGG 0.560614 4_1:-70609251 None:intergenic
GTAATTGGGAAAAGGGACTC+TGG 0.564622 4_1:+70610856 Msa0568970:CDS
GGCAGTTTGATAAAGAATCC+TGG 0.564656 4_1:+70611842 Msa0568970:CDS
TCCATCAATAAAGGTTCCAT+CGG 0.567010 4_1:-70612685 None:intergenic
TGATGCAAAACCAACATGCC+TGG 0.574370 4_1:-70612764 None:intergenic
ATATTATCGCATACCACCAT+GGG 0.576389 4_1:-70611738 None:intergenic
GTTGGAATGGAGATTCGAAC+GGG 0.578637 4_1:-70609076 None:intergenic
CATATTATCGCATACCACCA+TGG 0.578930 4_1:-70611739 None:intergenic
TTTCACCCCAAAATCTTGAA+GGG 0.581207 4_1:-70610890 None:intergenic
GTATACACCACATACTATCA+AGG 0.584193 4_1:-70613274 None:intergenic
AATGGTAGATGTTGTTGGAA+TGG 0.587350 4_1:-70609089 None:intergenic
AAAAGAACAAAAGATAAGGA+GGG 0.587410 4_1:+70609004 Msa0568970:CDS
GGGACGTGAAGCTCTTGACC+AGG 0.591339 4_1:+70610114 Msa0568970:CDS
CTCACGGCTTCCAAGTTGTA+CGG 0.592315 4_1:-70612425 None:intergenic
CATGGAGCAATCGTTCCACC+AGG 0.592431 4_1:-70611860 None:intergenic
ACATATTATACGACCTTCAG+CGG 0.593384 4_1:+70612945 Msa0568970:three_prime_UTR
CACTCCTGGATATGCATCAG+AGG 0.597649 4_1:+70612522 Msa0568970:CDS
CCAGCAACATATCCGCCACA+TGG 0.599034 4_1:-70611878 None:intergenic
GTGAAAAGCTTTAAGAACAC+GGG 0.600306 4_1:-70609311 None:intergenic
CATCACTATACTTACAAACA+AGG 0.600332 4_1:-70613296 None:intergenic
TGTTGGAATGGAGATTCGAA+CGG 0.600412 4_1:-70609077 None:intergenic
TATCAATCCCTTCGTTCCAG+AGG 0.600711 4_1:+70609138 Msa0568970:CDS
AAATCCTGAGTGTTCGGTCA+TGG 0.605022 4_1:+70611674 Msa0568970:CDS
CATGTGGCGGATATGTTGCT+GGG 0.607387 4_1:+70611879 Msa0568970:CDS
GAATTCAGAATTCAGAGCAG+TGG 0.610064 4_1:+70609264 Msa0568970:CDS
GAAGCGAGAGGCATAGCGAA+TGG 0.611375 4_1:-70609107 None:intergenic
TAATTGCTATGGGGAACTTG+TGG 0.611820 4_1:+70611701 Msa0568970:CDS
GGTACAAATTCAATTAAGGG+TGG 0.613885 4_1:+70612985 Msa0568970:three_prime_UTR
TCCTGAGTGTTCGGTCATGG+TGG 0.614793 4_1:+70611677 Msa0568970:CDS
AGGATAAGCAGAGAAGGCGC+AGG 0.615839 4_1:-70609047 None:intergenic
ATGCGTAGGATAAGCAGAGA+AGG 0.621133 4_1:-70609053 None:intergenic
TGCTATGGGGAACTTGTGGA+AGG 0.622880 4_1:+70611705 Msa0568970:CDS
TTCAGAGAAGCTCTCCTGTG+GGG 0.632335 4_1:+70612473 Msa0568970:CDS
TGTGAAAAGCTTTAAGAACA+CGG 0.632469 4_1:-70609312 None:intergenic
GGTTTGGTGTATGACCCCAC+AGG 0.633665 4_1:-70612487 None:intergenic
AAACCTGAACTGTATCACAT+CGG 0.634425 4_1:-70612194 None:intergenic
CTCTGATGCATATCCAGGAG+TGG 0.634582 4_1:-70612521 None:intergenic
GGAAGGCATTGAACCTCCCA+TGG 0.640149 4_1:+70611722 Msa0568970:CDS
AAGGCTCTCATGATATCACC+GGG 0.640580 4_1:-70611974 None:intergenic
GCGAGTACCTCTGGAACGAA+GGG 0.641161 4_1:-70609145 None:intergenic
TCCACCATGACCGAACACTC+AGG 0.644287 4_1:-70611678 None:intergenic
CAGAACTTCAGCAATCAGGA+AGG 0.652209 4_1:-70612130 None:intergenic
GCACTCATACAGAGGTCATG+TGG 0.658940 4_1:+70611070 Msa0568970:CDS
AGTGACCAAATCTCGTGCAG+CGG 0.661355 4_1:+70613043 Msa0568970:three_prime_UTR
TTATCGCATACCACCATGGG+AGG 0.664402 4_1:-70611735 None:intergenic
GGAACGATTGCTCCATGTGG+CGG 0.666888 4_1:+70611866 Msa0568970:CDS
GGCACTCATTGGACTCAATG+GGG 0.670357 4_1:+70612859 Msa0568970:CDS
ATTGGGAAAAGGGACTCTGG+TGG 0.681378 4_1:+70610859 Msa0568970:CDS
AAAAGCTTTAAGAACACGGG+TGG 0.682092 4_1:-70609308 None:intergenic
GATAGGAACAGAGAAGCGAG+AGG 0.690097 4_1:-70609119 None:intergenic
GGTGGAACGATTGCTCCATG+TGG 0.694007 4_1:+70611863 Msa0568970:CDS
CCTGAACTGTATCACATCGG+GGG 0.701546 4_1:-70612191 None:intergenic
ACCTGAACTGTATCACATCG+GGG 0.703191 4_1:-70612192 None:intergenic
CATGGTGGATAATTGCTATG+GGG 0.706640 4_1:+70611692 Msa0568970:CDS
AGGCATTGAACCTCCCATGG+TGG 0.710958 4_1:+70611725 Msa0568970:CDS
AGTTTGATAAAGAATCCTGG+TGG 0.766897 4_1:+70611845 Msa0568970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTCATTTACAAAA+CGG - chr4_1:70609388-70609407 None:intergenic 10.0%
!!! TGTAAATGAATAATTATTTT+AGG + chr4_1:70609391-70609410 Msa0568970:intron 10.0%
!!! TATTTTAGGTATTTATTTTT+TGG + chr4_1:70609405-70609424 Msa0568970:intron 10.0%
!!! ATTTTAGGTATTTATTTTTT+GGG + chr4_1:70609406-70609425 Msa0568970:intron 10.0%
!! ATATTAAGTTACTTATTAAT+AGG + chr4_1:70610209-70610228 Msa0568970:intron 10.0%
!! TATTAAGTTACTTATTAATA+GGG + chr4_1:70610210-70610229 Msa0568970:intron 10.0%
!!! TTTAAAGTTAATATTATTCA+AGG + chr4_1:70611201-70611220 Msa0568970:intron 10.0%
!!! TTTTAATTTTGATTTTAAGT+TGG + chr4_1:70612267-70612286 Msa0568970:intron 10.0%
!! AACTTAATATAAAGAAAACA+GGG - chr4_1:70610199-70610218 None:intergenic 15.0%
!! TAACTTAATATAAAGAAAAC+AGG - chr4_1:70610200-70610219 None:intergenic 15.0%
!! ATTAAGTTACTTATTAATAG+GGG + chr4_1:70610211-70610230 Msa0568970:intron 15.0%
!! TAGAATATTAGAAGAAAAAA+GGG - chr4_1:70610693-70610712 None:intergenic 15.0%
!! ATAGAATATTAGAAGAAAAA+AGG - chr4_1:70610694-70610713 None:intergenic 15.0%
!! TTCTAATAAAATGATAAATC+TGG - chr4_1:70612052-70612071 None:intergenic 15.0%
!!! AAACATAATCAATTTGTTTA+GGG - chr4_1:70612572-70612591 None:intergenic 15.0%
!!! AAAACATAATCAATTTGTTT+AGG - chr4_1:70612573-70612592 None:intergenic 15.0%
!!! TAAACAAATTGATTATGTTT+TGG + chr4_1:70612572-70612591 Msa0568970:intron 15.0%
!!! AAAATATTGAGTTTTGTAAA+TGG + chr4_1:70613188-70613207 Msa0568970:three_prime_UTR 15.0%
!! AATAAGCTAAAAATAGCTTA+TGG + chr4_1:70609566-70609585 Msa0568970:intron 20.0%
!! ATTAACAAAACAACCAATTA+GGG - chr4_1:70609930-70609949 None:intergenic 20.0%
!! ATTAACAAAACAACCAATTA+GGG - chr4_1:70609930-70609949 None:intergenic 20.0%
!! AATACTAACAATGTTAACAT+TGG + chr4_1:70610321-70610340 Msa0568970:intron 20.0%
!! TATAACTTGAAGCTATAATT+TGG - chr4_1:70610497-70610516 None:intergenic 20.0%
!! TAACTTATAATCAATTCTGA+AGG + chr4_1:70610515-70610534 Msa0568970:intron 20.0%
!!! TTTTTTACCAATAGAATTAC+TGG + chr4_1:70611431-70611450 Msa0568970:intron 20.0%
!!! TAATATTTTTAGGTCACAAA+AGG - chr4_1:70611485-70611504 None:intergenic 20.0%
!!! TTCTGTTCTCTAATATTTTT+AGG - chr4_1:70611495-70611514 None:intergenic 20.0%
!!! ATGCATTTTTTGCTTATATT+TGG + chr4_1:70612075-70612094 Msa0568970:intron 20.0%
!!! ATTTTCTGTATTCTTTACAA+GGG + chr4_1:70612105-70612124 Msa0568970:intron 20.0%
!! CAAAATTAAAAATCAGATAC+AGG - chr4_1:70612258-70612277 None:intergenic 20.0%
!! GTAATATTGAACATCATTTA+AGG - chr4_1:70612599-70612618 None:intergenic 20.0%
!! ATCAAAGAGTTATTAATATC+TGG - chr4_1:70612641-70612660 None:intergenic 20.0%
!! AAGCAATAGTATACTATATA+CGG + chr4_1:70612786-70612805 Msa0568970:intron 20.0%
!! ATTGGTACAAATTCAATTAA+GGG + chr4_1:70612982-70613001 Msa0568970:three_prime_UTR 20.0%
! ACGAAAAAGAACAAAAGATA+AGG + chr4_1:70609000-70609019 Msa0568970:CDS 25.0%
! AAAAAGAACAAAAGATAAGG+AGG + chr4_1:70609003-70609022 Msa0568970:CDS 25.0%
! AAAAGAACAAAAGATAAGGA+GGG + chr4_1:70609004-70609023 Msa0568970:CDS 25.0%
! TTATCTATTAGCATAAGCAT+TGG - chr4_1:70609635-70609654 None:intergenic 25.0%
! AAACATTGGATATATAAGAG+AGG + chr4_1:70609746-70609765 Msa0568970:intron 25.0%
! AACATTGGATATATAAGAGA+GGG + chr4_1:70609747-70609766 Msa0568970:intron 25.0%
! CATTAACAAAACAACCAATT+AGG - chr4_1:70609931-70609950 None:intergenic 25.0%
! CATTAACAAAACAACCAATT+AGG - chr4_1:70609931-70609950 None:intergenic 25.0%
! CATTGTTAGTATTATATGCT+GGG - chr4_1:70610314-70610333 None:intergenic 25.0%
! ACATTGTTAGTATTATATGC+TGG - chr4_1:70610315-70610334 None:intergenic 25.0%
! CATTGGCGATTTAAATAAAA+AGG + chr4_1:70610338-70610357 Msa0568970:intron 25.0%
! TTGAATATGTAACTGGAATA+AGG + chr4_1:70610767-70610786 Msa0568970:intron 25.0%
! AAGAAATATTAGTAGCATAC+CGG - chr4_1:70610928-70610947 None:intergenic 25.0%
!!! ATTCGTATTTTAATTCACAC+AGG - chr4_1:70611239-70611258 None:intergenic 25.0%
!! TATTATGGACTTTTAGATCA+GGG - chr4_1:70611294-70611313 None:intergenic 25.0%
! TATAGCTTCTACTAGTATTA+TGG - chr4_1:70611309-70611328 None:intergenic 25.0%
!! TAGAAGCTATATTGATTGTT+AGG + chr4_1:70611318-70611337 Msa0568970:intron 25.0%
!! AGAAGCTATATTGATTGTTA+GGG + chr4_1:70611319-70611338 Msa0568970:intron 25.0%
! TAGTATTCCAGTAATTCTAT+TGG - chr4_1:70611441-70611460 None:intergenic 25.0%
! TATTAGAGAACAGAAAATAG+TGG + chr4_1:70611500-70611519 Msa0568970:intron 25.0%
!! CTTTTAAATTATGAGCGTTA+GGG + chr4_1:70611537-70611556 Msa0568970:intron 25.0%
! TTTGTGATCGGAAAAATTAT+AGG - chr4_1:70611612-70611631 None:intergenic 25.0%
! AAGAAATAATCCCTGAAAAA+AGG - chr4_1:70611996-70612015 None:intergenic 25.0%
!! ATTATTTCTTTCACCTCAAA+TGG + chr4_1:70612006-70612025 Msa0568970:CDS 25.0%
!! GATTTTCTGTATTCTTTACA+AGG + chr4_1:70612104-70612123 Msa0568970:intron 25.0%
! AAGAGTTATTAATATCTGGT+AGG - chr4_1:70612637-70612656 None:intergenic 25.0%
! AGCAATAGTATACTATATAC+GGG + chr4_1:70612787-70612806 Msa0568970:intron 25.0%
!!! TTCATTTGTTTTTCAAATGC+AGG + chr4_1:70612834-70612853 Msa0568970:intron 25.0%
!!! TCATTTGTTTTTCAAATGCA+GGG + chr4_1:70612835-70612854 Msa0568970:intron 25.0%
!!! AAGTTCTGAAATCTATATGA+TGG + chr4_1:70612896-70612915 Msa0568970:CDS 25.0%
! GATTGGTACAAATTCAATTA+AGG + chr4_1:70612981-70613000 Msa0568970:three_prime_UTR 25.0%
!! TGATGTAGATTTTGGATTTT+TGG + chr4_1:70613072-70613091 Msa0568970:three_prime_UTR 25.0%
!! GATGTAGATTTTGGATTTTT+GGG + chr4_1:70613073-70613092 Msa0568970:three_prime_UTR 25.0%
GCAACAAAATTAAGTCTGAA+TGG - chr4_1:70609214-70609233 None:intergenic 30.0%
! ACTTAATTTTGTTGCAATGC+AGG + chr4_1:70609219-70609238 Msa0568970:intron 30.0%
TTCTGAATTCAATGCATCAA+CGG - chr4_1:70609254-70609273 None:intergenic 30.0%
!! TGTGAAAAGCTTTAAGAACA+CGG - chr4_1:70609315-70609334 None:intergenic 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG + chr4_1:70609531-70609550 Msa0568970:intron 30.0%
!! TGTTGTTTCTATAAGCTCTT+CGG + chr4_1:70609599-70609618 Msa0568970:intron 30.0%
TCAAATAAGACAATCCAAAC+AGG + chr4_1:70609657-70609676 Msa0568970:intron 30.0%
ACATTGGATATATAAGAGAG+GGG + chr4_1:70609748-70609767 Msa0568970:intron 30.0%
! ATAAAGACCAATGTGTTGTT+GGG - chr4_1:70609870-70609889 None:intergenic 30.0%
! TAAAGACCAATGTGTTGTTA+GGG - chr4_1:70609984-70610003 None:intergenic 30.0%
! ATAAAGACCAATGTGTTGTT+AGG - chr4_1:70609870-70609889 None:intergenic 30.0%
ACTTATTAATAGGGGATATG+AGG + chr4_1:70610219-70610238 Msa0568970:intron 30.0%
AATTAAGGAGTGAAGTGATA+AGG + chr4_1:70610266-70610285 Msa0568970:intron 30.0%
ATTAAGGAGTGAAGTGATAA+GGG + chr4_1:70610267-70610286 Msa0568970:intron 30.0%
AAATTCAAACATCCCAAAAG+TGG + chr4_1:70610559-70610578 Msa0568970:intron 30.0%
ATAGTATGCAAGTGTATGTT+TGG - chr4_1:70610587-70610606 None:intergenic 30.0%
TTCCAGTTACATATTCAACA+GGG - chr4_1:70610765-70610784 None:intergenic 30.0%
ATTCCAGTTACATATTCAAC+AGG - chr4_1:70610766-70610785 None:intergenic 30.0%
! CTAATATAGCTATCAGCTTT+TGG + chr4_1:70610798-70610817 Msa0568970:intron 30.0%
ACACATTAGAGGAAGTAATT+GGG + chr4_1:70610842-70610861 Msa0568970:CDS 30.0%
!! TATGAGTGCACATTTTGTTT+CGG - chr4_1:70611059-70611078 None:intergenic 30.0%
AGTTTGAGTGTTAATGACAT+AGG + chr4_1:70611109-70611128 Msa0568970:CDS 30.0%
GTTTGAGTGTTAATGACATA+GGG + chr4_1:70611110-70611129 Msa0568970:CDS 30.0%
! AGATTCATAGTTGTGCTTTT+TGG + chr4_1:70611157-70611176 Msa0568970:intron 30.0%
! GTATTATGGACTTTTAGATC+AGG - chr4_1:70611295-70611314 None:intergenic 30.0%
! GCTTTTAAATTATGAGCGTT+AGG + chr4_1:70611536-70611555 Msa0568970:intron 30.0%
! TTTTGCATCTGAACATTGAA+GGG - chr4_1:70611657-70611676 None:intergenic 30.0%
! ATTTTGCATCTGAACATTGA+AGG - chr4_1:70611658-70611677 None:intergenic 30.0%
GAATAAAGCAATACATACTG+CGG - chr4_1:70611765-70611784 None:intergenic 30.0%
! GTATGTATTGCTTTATTCCA+AGG + chr4_1:70611767-70611786 Msa0568970:intron 30.0%
TATCACATTTCTACATTGGT+CGG + chr4_1:70611798-70611817 Msa0568970:intron 30.0%
ATTAATATCTGGTAGGACTT+TGG - chr4_1:70612630-70612649 None:intergenic 30.0%
ACTAGTACTTCCATCAATAA+AGG - chr4_1:70612697-70612716 None:intergenic 30.0%
TTAATAATATTGTCCGCTGA+AGG - chr4_1:70612961-70612980 None:intergenic 30.0%
GCGGACAATATTATTAAGAT+TGG + chr4_1:70612964-70612983 Msa0568970:three_prime_UTR 30.0%
!! TTGAGTTTTGTAAATGGCTT+AGG + chr4_1:70613194-70613213 Msa0568970:three_prime_UTR 30.0%
CATCACTATACTTACAAACA+AGG - chr4_1:70613299-70613318 None:intergenic 30.0%
AATGGTAGATGTTGTTGGAA+TGG - chr4_1:70609092-70609111 None:intergenic 35.0%
!! GTGAAAAGCTTTAAGAACAC+GGG - chr4_1:70609314-70609333 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+GGG - chr4_1:70609775-70609794 None:intergenic 35.0%
! ACCTTAAGGCATTAGGTATA+TGG - chr4_1:70609776-70609795 None:intergenic 35.0%
! ACTCAAAACCTTAAGGCATT+AGG - chr4_1:70609783-70609802 None:intergenic 35.0%
!!! TAATGCCTTAAGGTTTTGAG+TGG + chr4_1:70609782-70609801 Msa0568970:intron 35.0%
! TAAAGACCAATGTGTTGTTG+GGG - chr4_1:70609869-70609888 None:intergenic 35.0%
CATAAAGACCAATGTGTTGT+TGG - chr4_1:70609871-70609890 None:intergenic 35.0%
CAATCTAAACATGCCCTAAT+TGG + chr4_1:70609914-70609933 Msa0568970:intron 35.0%
CAATCTAAACATGCCCTAAT+TGG + chr4_1:70609914-70609933 Msa0568970:intron 35.0%
ATTAATAGGGGATATGAGGT+TGG + chr4_1:70610223-70610242 Msa0568970:intron 35.0%
TTAAGGAGTGAAGTGATAAG+GGG + chr4_1:70610268-70610287 Msa0568970:intron 35.0%
!! GTATGTTTGGTTCCACTTTT+GGG - chr4_1:70610574-70610593 None:intergenic 35.0%
!! TGTATGTTTGGTTCCACTTT+TGG - chr4_1:70610575-70610594 None:intergenic 35.0%
TTCCCTGTTGAATATGTAAC+TGG + chr4_1:70610760-70610779 Msa0568970:intron 35.0%
ACTTCCTCTAATGTGTCATA+TGG - chr4_1:70610838-70610857 None:intergenic 35.0%
GACACATTAGAGGAAGTAAT+TGG + chr4_1:70610841-70610860 Msa0568970:CDS 35.0%
TAGAGGAAGTAATTGGGAAA+AGG + chr4_1:70610848-70610867 Msa0568970:CDS 35.0%
AGAGGAAGTAATTGGGAAAA+GGG + chr4_1:70610849-70610868 Msa0568970:CDS 35.0%
TTTCACCCCAAAATCTTGAA+GGG - chr4_1:70610893-70610912 None:intergenic 35.0%
ATTTCACCCCAAAATCTTGA+AGG - chr4_1:70610894-70610913 None:intergenic 35.0%
!! ATGAGTGCACATTTTGTTTC+GGG - chr4_1:70611058-70611077 None:intergenic 35.0%
TTAATTCACACAGGTCACAA+TGG - chr4_1:70611230-70611249 None:intergenic 35.0%
! ACAGGTGAAGATTTTGTGAT+CGG - chr4_1:70611624-70611643 None:intergenic 35.0%
TTGAAGGGTAAAAAGGTTAC+AGG - chr4_1:70611642-70611661 None:intergenic 35.0%
CTGAACATTGAAGGGTAAAA+AGG - chr4_1:70611649-70611668 None:intergenic 35.0%
!! TCATGGTGGATAATTGCTAT+GGG + chr4_1:70611691-70611710 Msa0568970:CDS 35.0%
ATATTATCGCATACCACCAT+GGG - chr4_1:70611741-70611760 None:intergenic 35.0%
GCAGTATCACATTTCTACAT+TGG + chr4_1:70611794-70611813 Msa0568970:intron 35.0%
AGTTTGATAAAGAATCCTGG+TGG + chr4_1:70611845-70611864 Msa0568970:CDS 35.0%
TGTTGCTGGGAAAAAGAAAT+TGG + chr4_1:70611892-70611911 Msa0568970:CDS 35.0%
!!! TATCATGAGAGCCTTTTTTC+AGG + chr4_1:70611982-70612001 Msa0568970:CDS 35.0%
!!! ATCATGAGAGCCTTTTTTCA+GGG + chr4_1:70611983-70612002 Msa0568970:CDS 35.0%
TTTCTTTCACCTCAAATGGT+TGG + chr4_1:70612010-70612029 Msa0568970:CDS 35.0%
TTCTTTCACCTCAAATGGTT+GGG + chr4_1:70612011-70612030 Msa0568970:CDS 35.0%
AAACCTGAACTGTATCACAT+CGG - chr4_1:70612197-70612216 None:intergenic 35.0%
TCTAGAAAGAAAGATAGCAC+AGG - chr4_1:70612230-70612249 None:intergenic 35.0%
ATACTGAAAGAAACTCCTAC+GGG - chr4_1:70612348-70612367 None:intergenic 35.0%
CATACTGAAAGAAACTCCTA+CGG - chr4_1:70612349-70612368 None:intergenic 35.0%
AATTGATCTTCAATGCCTGT+AGG + chr4_1:70612402-70612421 Msa0568970:intron 35.0%
! AATTTGTTTAGGGACTGTGA+AGG - chr4_1:70612562-70612581 None:intergenic 35.0%
TCTTTGATATCACTCTTCTC+AGG + chr4_1:70612653-70612672 Msa0568970:intron 35.0%
TCCATCAATAAAGGTTCCAT+CGG - chr4_1:70612688-70612707 None:intergenic 35.0%
!! TTTGTTTTTCAAATGCAGGG+TGG + chr4_1:70612838-70612857 Msa0568970:intron 35.0%
TAGATTTCAGAACTTCTCCT+AGG - chr4_1:70612891-70612910 None:intergenic 35.0%
ACATATTATACGACCTTCAG+CGG + chr4_1:70612945-70612964 Msa0568970:three_prime_UTR 35.0%
GGTACAAATTCAATTAAGGG+TGG + chr4_1:70612985-70613004 Msa0568970:three_prime_UTR 35.0%
! AGATTTGGTCACTGTTAGTT+CGG - chr4_1:70613036-70613055 None:intergenic 35.0%
GGTCAAAACAGTTCTTATCA+TGG - chr4_1:70613256-70613275 None:intergenic 35.0%
!! GTTTTGACCTTGATAGTATG+TGG + chr4_1:70613267-70613286 Msa0568970:three_prime_UTR 35.0%
GTATACACCACATACTATCA+AGG - chr4_1:70613277-70613296 None:intergenic 35.0%
TGCAATGTGTCTCTTTCTTA+TGG + chr4_1:70613317-70613336 Msa0568970:three_prime_UTR 35.0%
!! GTTAACTTGTGCTGAAAGAA+TGG + chr4_1:70613339-70613358 Msa0568970:three_prime_UTR 35.0%
TGTTGGAATGGAGATTCGAA+CGG - chr4_1:70609080-70609099 None:intergenic 40.0%
TAGCGAATGGTAGATGTTGT+TGG - chr4_1:70609097-70609116 None:intergenic 40.0%
!!! GTTTTGAAGCAGCGAAATCA+TGG - chr4_1:70609192-70609211 None:intergenic 40.0%
GAATTCAGAATTCAGAGCAG+TGG + chr4_1:70609264-70609283 Msa0568970:CDS 40.0%
!! AAAAGCTTTAAGAACACGGG+TGG - chr4_1:70609311-70609330 None:intergenic 40.0%
ACAATGAGAATGAGCCTGTT+TGG - chr4_1:70609674-70609693 None:intergenic 40.0%
AGGCTCATTCTCATTGTGTT+GGG + chr4_1:70609677-70609696 Msa0568970:intron 40.0%
! GATTATATCCCACATCGACT+AGG + chr4_1:70609715-70609734 Msa0568970:intron 40.0%
ACTAGGAATGGAGGAAACAT+TGG + chr4_1:70609732-70609751 Msa0568970:intron 40.0%
CCCATATACCTAATGCCTTA+AGG + chr4_1:70609772-70609791 Msa0568970:intron 40.0%
CATCTCCACTCAAAACCTTA+AGG - chr4_1:70609790-70609809 None:intergenic 40.0%
!!! TAAGGTTTTGAGTGGAGATG+TGG + chr4_1:70609790-70609809 Msa0568970:intron 40.0%
GATGTGGTGTCTAAGTTTCT+TGG + chr4_1:70609806-70609825 Msa0568970:intron 40.0%
TGTTAATGCTGTCAGCACTT+TGG + chr4_1:70610058-70610077 Msa0568970:intron 40.0%
GTTATGGTCATGATGAAGCT+GGG + chr4_1:70610092-70610111 Msa0568970:intron 40.0%
TTATGGTCATGATGAAGCTG+GGG + chr4_1:70610093-70610112 Msa0568970:intron 40.0%
CAACAATTTCTGCAAAAGCC+TGG - chr4_1:70610135-70610154 None:intergenic 40.0%
! CAGGCTTTTGCAGAAATTGT+TGG + chr4_1:70610133-70610152 Msa0568970:CDS 40.0%
ATCAGCTATTGTTCGTTCAC+AGG + chr4_1:70610162-70610181 Msa0568970:CDS 40.0%
AGTATTATATGCTGGGAGTG+TGG - chr4_1:70610307-70610326 None:intergenic 40.0%
ACTTGTCAACAGTTCTTCTC+AGG + chr4_1:70610611-70610630 Msa0568970:intron 40.0%
GGCAAATAAAGCACATGTGA+TGG - chr4_1:70610645-70610664 None:intergenic 40.0%
CAACTATAGAGCTATACTGC+TGG - chr4_1:70610732-70610751 None:intergenic 40.0%
TGCTCCATATGACACATTAG+AGG + chr4_1:70610831-70610850 Msa0568970:CDS 40.0%
! TTGGGTTCCCTTCAAGATTT+TGG + chr4_1:70610883-70610902 Msa0568970:CDS 40.0%
! TGGGTTCCCTTCAAGATTTT+GGG + chr4_1:70610884-70610903 Msa0568970:CDS 40.0%
!!! ATTTTTTCATCAGCTTGCCG+AGG + chr4_1:70610991-70611010 Msa0568970:intron 40.0%
CAAAATGTGCACTCATACAG+AGG + chr4_1:70611062-70611081 Msa0568970:CDS 40.0%
AGAGGTCATGTGGTTATTCA+TGG + chr4_1:70611080-70611099 Msa0568970:CDS 40.0%
!!! TACAGCAGTCTTGTTTTGCA+TGG + chr4_1:70611404-70611423 Msa0568970:intron 40.0%
AGGTCACAAAAGGAATCAGT+TGG - chr4_1:70611475-70611494 None:intergenic 40.0%
GATGCAAAATCCTGAGTGTT+CGG + chr4_1:70611668-70611687 Msa0568970:intron 40.0%
!! GTCATGGTGGATAATTGCTA+TGG + chr4_1:70611690-70611709 Msa0568970:CDS 40.0%
!! CATGGTGGATAATTGCTATG+GGG + chr4_1:70611692-70611711 Msa0568970:CDS 40.0%
TAATTGCTATGGGGAACTTG+TGG + chr4_1:70611701-70611720 Msa0568970:CDS 40.0%
CATATTATCGCATACCACCA+TGG - chr4_1:70611742-70611761 None:intergenic 40.0%
AATGTGATACTGCACATCCT+TGG - chr4_1:70611787-70611806 None:intergenic 40.0%
GGCAGTTTGATAAAGAATCC+TGG + chr4_1:70611842-70611861 Msa0568970:CDS 40.0%
AAAGGCTCTCATGATATCAC+CGG - chr4_1:70611978-70611997 None:intergenic 40.0%
TCTTTCACCTCAAATGGTTG+GGG + chr4_1:70612012-70612031 Msa0568970:CDS 40.0%
AACCTGAACTGTATCACATC+GGG - chr4_1:70612196-70612215 None:intergenic 40.0%
!! TGGCAGCGAAATTTTGTTTC+TGG + chr4_1:70612287-70612306 Msa0568970:intron 40.0%
!! TGTTTCTGGTAGAAAAGCTG+TGG + chr4_1:70612301-70612320 Msa0568970:intron 40.0%
! TAGAAAAGCTGTGGTTGATG+TGG + chr4_1:70612310-70612329 Msa0568970:intron 40.0%
! AGAAAAGCTGTGGTTGATGT+GGG + chr4_1:70612311-70612330 Msa0568970:intron 40.0%
GTCATACACCAAACCAATTG+CGG + chr4_1:70612495-70612514 Msa0568970:CDS 40.0%
TCATACACCAAACCAATTGC+GGG + chr4_1:70612496-70612515 Msa0568970:CDS 40.0%
ACTAGTGAGCTTTCATGTGA+TGG + chr4_1:70612711-70612730 Msa0568970:CDS 40.0%
ACAGCAAATGGCTCTCTAAA+AGG - chr4_1:70612738-70612757 None:intergenic 40.0%
GTCACTGTTAGTTCGGATTT+CGG - chr4_1:70613029-70613048 None:intergenic 40.0%
!!! GGGTGAGTTGATGTAGATTT+TGG + chr4_1:70613064-70613083 Msa0568970:three_prime_UTR 40.0%
ATGCGTAGGATAAGCAGAGA+AGG - chr4_1:70609056-70609075 None:intergenic 45.0%
GTTGGAATGGAGATTCGAAC+GGG - chr4_1:70609079-70609098 None:intergenic 45.0%
! TCTGGAACGAAGGGATTGAT+AGG - chr4_1:70609139-70609158 None:intergenic 45.0%
TATCAATCCCTTCGTTCCAG+AGG + chr4_1:70609138-70609157 Msa0568970:CDS 45.0%
! GCTTTTCACAATGCTCGACT+TGG + chr4_1:70609325-70609344 Msa0568970:CDS 45.0%
CAGGCTCATTCTCATTGTGT+TGG + chr4_1:70609676-70609695 Msa0568970:intron 45.0%
! TATCCCACATCGACTAGGAA+TGG + chr4_1:70609720-70609739 Msa0568970:intron 45.0%
GTGGTGTCTAAGTTTCTTGG+TGG + chr4_1:70609809-70609828 Msa0568970:intron 45.0%
! AATGTGTTGTTAGGGAGTCC+GGG - chr4_1:70609976-70609995 None:intergenic 45.0%
! CAATGTGTTGTTAGGGAGTC+CGG - chr4_1:70609977-70609996 None:intergenic 45.0%
TAATGCTGTCAGCACTTTGG+TGG + chr4_1:70610061-70610080 Msa0568970:intron 45.0%
!! TTTGGTGGTTGCACTGGTTA+TGG + chr4_1:70610076-70610095 Msa0568970:intron 45.0%
GGTTATGGTCATGATGAAGC+TGG + chr4_1:70610091-70610110 Msa0568970:intron 45.0%
TATGGTCATGATGAAGCTGG+GGG + chr4_1:70610094-70610113 Msa0568970:intron 45.0%
! TAGGGGATATGAGGTTGGTT+TGG + chr4_1:70610228-70610247 Msa0568970:intron 45.0%
!! TTGGTTTGGTGGCTGAAGTA+GGG + chr4_1:70610242-70610261 Msa0568970:intron 45.0%
TGGCTGAAGTAGGGGAATTA+AGG + chr4_1:70610251-70610270 Msa0568970:intron 45.0%
AGTGAAGTGATAAGGGGTTG+AGG + chr4_1:70610274-70610293 Msa0568970:intron 45.0%
GTGAAGTGATAAGGGGTTGA+GGG + chr4_1:70610275-70610294 Msa0568970:intron 45.0%
!! GTGCTTTATTTGCCCTCTTG+AGG + chr4_1:70610651-70610670 Msa0568970:intron 45.0%
AAAAGGGTTACCTCATCTCC+TGG - chr4_1:70610677-70610696 None:intergenic 45.0%
! TATCAGCTTTTGGCAGTTGC+TGG + chr4_1:70610808-70610827 Msa0568970:intron 45.0%
GTAATTGGGAAAAGGGACTC+TGG + chr4_1:70610856-70610875 Msa0568970:CDS 45.0%
AAAAGGGACTCTGGTGGTTT+GGG + chr4_1:70610865-70610884 Msa0568970:CDS 45.0%
! GGGTTCCCTTCAAGATTTTG+GGG + chr4_1:70610885-70610904 Msa0568970:CDS 45.0%
GGTGAAATACCGAGAAGTTC+CGG + chr4_1:70610906-70610925 Msa0568970:CDS 45.0%
AGTAGCATACCGGAACTTCT+CGG - chr4_1:70610918-70610937 None:intergenic 45.0%
CTGCTGTAGAGAGTTATCAG+TGG - chr4_1:70611392-70611411 None:intergenic 45.0%
AAATCCTGAGTGTTCGGTCA+TGG + chr4_1:70611674-70611693 Msa0568970:CDS 45.0%
ACATTTCTACATTGGTCGGC+AGG + chr4_1:70611802-70611821 Msa0568970:intron 45.0%
CATTTCTACATTGGTCGGCA+GGG + chr4_1:70611803-70611822 Msa0568970:intron 45.0%
AAGGCTCTCATGATATCACC+GGG - chr4_1:70611977-70611996 None:intergenic 45.0%
ATTGCTTCCCCAACCATTTG+AGG - chr4_1:70612022-70612041 None:intergenic 45.0%
AATGGTTGGGGAAGCAATCA+AGG + chr4_1:70612024-70612043 Msa0568970:CDS 45.0%
CAGAACTTCAGCAATCAGGA+AGG - chr4_1:70612133-70612152 None:intergenic 45.0%
CTTCCTGATTGCTGAAGTTC+TGG + chr4_1:70612131-70612150 Msa0568970:CDS 45.0%
ATGCCAGAACTTCAGCAATC+AGG - chr4_1:70612137-70612156 None:intergenic 45.0%
! TGCTGAAGTTCTGGCATCTA+AGG + chr4_1:70612140-70612159 Msa0568970:CDS 45.0%
! GCTGAAGTTCTGGCATCTAA+GGG + chr4_1:70612141-70612160 Msa0568970:CDS 45.0%
ACCTGAACTGTATCACATCG+GGG - chr4_1:70612195-70612214 None:intergenic 45.0%
TGGGCAAAAATTTGTCCCGT+AGG + chr4_1:70612330-70612349 Msa0568970:intron 45.0%
AAAAAGCAAGGAGACGCTCA+CGG - chr4_1:70612444-70612463 None:intergenic 45.0%
GAACAGCCTCACAAAAAGCA+AGG - chr4_1:70612456-70612475 None:intergenic 45.0%
TCTCAGGTTATCTTTGCCGA+TGG + chr4_1:70612669-70612688 Msa0568970:intron 45.0%
GCCGATGGAACCTTTATTGA+TGG + chr4_1:70612684-70612703 Msa0568970:CDS 45.0%
!!! GCCATTTGCTGTATTTTGCC+AGG + chr4_1:70612746-70612765 Msa0568970:CDS 45.0%
GCCTGGCAAAATACAGCAAA+TGG - chr4_1:70612750-70612769 None:intergenic 45.0%
! CTGTATTTTGCCAGGCATGT+TGG + chr4_1:70612754-70612773 Msa0568970:intron 45.0%
TGATGCAAAACCAACATGCC+TGG - chr4_1:70612767-70612786 None:intergenic 45.0%
TGGCACTCATTGGACTCAAT+GGG + chr4_1:70612858-70612877 Msa0568970:CDS 45.0%
GATAGGAACAGAGAAGCGAG+AGG - chr4_1:70609122-70609141 None:intergenic 50.0%
CCTCCATTCCTAGTCGATGT+GGG - chr4_1:70609726-70609745 None:intergenic 50.0%
TCCTCCATTCCTAGTCGATG+TGG - chr4_1:70609727-70609746 None:intergenic 50.0%
! CAATGTGTTGTTGGGGAGTC+CGG - chr4_1:70609862-70609881 None:intergenic 50.0%
! ATGTGTTGTTAGGGAGTCCG+GGG - chr4_1:70609975-70609994 None:intergenic 50.0%
CGGACTCCCTAACAACACAT+TGG + chr4_1:70609975-70609994 Msa0568970:intron 50.0%
!! GGGATATGAGGTTGGTTTGG+TGG + chr4_1:70610231-70610250 Msa0568970:intron 50.0%
!! GTTGGTTTGGTGGCTGAAGT+AGG + chr4_1:70610241-70610260 Msa0568970:intron 50.0%
!! TGGTTTGGTGGCTGAAGTAG+GGG + chr4_1:70610243-70610262 Msa0568970:intron 50.0%
TTATTTGCCCTCTTGAGGCC+AGG + chr4_1:70610656-70610675 Msa0568970:intron 50.0%
ATTGGGAAAAGGGACTCTGG+TGG + chr4_1:70610859-70610878 Msa0568970:CDS 50.0%
GAAAAGGGACTCTGGTGGTT+TGG + chr4_1:70610864-70610883 Msa0568970:CDS 50.0%
TTTCATCAGCTTGCCGAGGA+TGG + chr4_1:70610995-70611014 Msa0568970:intron 50.0%
GCACTCATACAGAGGTCATG+TGG + chr4_1:70611070-70611089 Msa0568970:CDS 50.0%
TGCTATGGGGAACTTGTGGA+AGG + chr4_1:70611705-70611724 Msa0568970:CDS 50.0%
TTATCGCATACCACCATGGG+AGG - chr4_1:70611738-70611757 None:intergenic 50.0%
!! CATGTGGCGGATATGTTGCT+GGG + chr4_1:70611879-70611898 Msa0568970:CDS 50.0%
! GTGGATTGTGGTTCAACTCC+CGG + chr4_1:70611956-70611975 Msa0568970:CDS 50.0%
CCTGAACTGTATCACATCGG+GGG - chr4_1:70612194-70612213 None:intergenic 50.0%
TTCCAAGTTGTACGGCCTAC+AGG - chr4_1:70612420-70612439 None:intergenic 50.0%
CTCACGGCTTCCAAGTTGTA+CGG - chr4_1:70612428-70612447 None:intergenic 50.0%
!!! GCGTCTCCTTGCTTTTTGTG+AGG + chr4_1:70612447-70612466 Msa0568970:CDS 50.0%
TGTTCAGAGAAGCTCTCCTG+TGG + chr4_1:70612471-70612490 Msa0568970:CDS 50.0%
GTTCAGAGAAGCTCTCCTGT+GGG + chr4_1:70612472-70612491 Msa0568970:CDS 50.0%
TTCAGAGAAGCTCTCCTGTG+GGG + chr4_1:70612473-70612492 Msa0568970:CDS 50.0%
AGTGGTACCCGCAATTGGTT+TGG - chr4_1:70612506-70612525 None:intergenic 50.0%
CTCTGATGCATATCCAGGAG+TGG - chr4_1:70612524-70612543 None:intergenic 50.0%
CACTCCTGGATATGCATCAG+AGG + chr4_1:70612522-70612541 Msa0568970:CDS 50.0%
CAGACCTCTGATGCATATCC+AGG - chr4_1:70612529-70612548 None:intergenic 50.0%
AAATGCAGGGTGGCACTCAT+TGG + chr4_1:70612848-70612867 Msa0568970:intron 50.0%
GTGGCACTCATTGGACTCAA+TGG + chr4_1:70612857-70612876 Msa0568970:CDS 50.0%
GGCACTCATTGGACTCAATG+GGG + chr4_1:70612859-70612878 Msa0568970:CDS 50.0%
!! ACTCAATGGGGACTAGTCCT+AGG + chr4_1:70612871-70612890 Msa0568970:CDS 50.0%
AGTGACCAAATCTCGTGCAG+CGG + chr4_1:70613043-70613062 Msa0568970:three_prime_UTR 50.0%
! AGGATAAGCAGAGAAGGCGC+AGG - chr4_1:70609050-70609069 None:intergenic 55.0%
GAGATTCGAACGGGATGCGT+AGG - chr4_1:70609070-70609089 None:intergenic 55.0%
! GAAGCGAGAGGCATAGCGAA+TGG - chr4_1:70609110-70609129 None:intergenic 55.0%
!! GCGAGTACCTCTGGAACGAA+GGG - chr4_1:70609148-70609167 None:intergenic 55.0%
!! AGCGAGTACCTCTGGAACGA+AGG - chr4_1:70609149-70609168 None:intergenic 55.0%
GAAGAGTGAGCGAGTACCTC+TGG - chr4_1:70609157-70609176 None:intergenic 55.0%
! CCCACATCGACTAGGAATGG+AGG + chr4_1:70609723-70609742 Msa0568970:intron 55.0%
!! CGGCAATGGGCTAAACGTTC+AGG - chr4_1:70609836-70609855 None:intergenic 55.0%
GTTTAGCCCATTGCCGTCTC+CGG + chr4_1:70609840-70609859 Msa0568970:intron 55.0%
CGGACTCCCCAACAACACAT+TGG + chr4_1:70609860-70609879 Msa0568970:intron 55.0%
TTTAACCCATTGCCGCTCCC+CGG + chr4_1:70609955-70609974 Msa0568970:intron 55.0%
! CAGCACTTTGGTGGTTGCAC+TGG + chr4_1:70610070-70610089 Msa0568970:intron 55.0%
CTCATCTCCTGGCCTCAAGA+GGG - chr4_1:70610666-70610685 None:intergenic 55.0%
CCAGTCAAGTCCACCATCCT+CGG - chr4_1:70611011-70611030 None:intergenic 55.0%
TCCTGAGTGTTCGGTCATGG+TGG + chr4_1:70611677-70611696 Msa0568970:CDS 55.0%
TCCACCATGACCGAACACTC+AGG - chr4_1:70611681-70611700 None:intergenic 55.0%
!! GGAAGGCATTGAACCTCCCA+TGG + chr4_1:70611722-70611741 Msa0568970:CDS 55.0%
!! AGGCATTGAACCTCCCATGG+TGG + chr4_1:70611725-70611744 Msa0568970:CDS 55.0%
TCGGCAGGGTGCAGATTTGA+TGG + chr4_1:70611817-70611836 Msa0568970:intron 55.0%
! CAGGGTGCAGATTTGATGGC+AGG + chr4_1:70611821-70611840 Msa0568970:intron 55.0%
CATGGAGCAATCGTTCCACC+AGG - chr4_1:70611863-70611882 None:intergenic 55.0%
GGTGGAACGATTGCTCCATG+TGG + chr4_1:70611863-70611882 Msa0568970:CDS 55.0%
GGAACGATTGCTCCATGTGG+CGG + chr4_1:70611866-70611885 Msa0568970:CDS 55.0%
CCAGCAACATATCCGCCACA+TGG - chr4_1:70611881-70611900 None:intergenic 55.0%
!! CCATGTGGCGGATATGTTGC+TGG + chr4_1:70611878-70611897 Msa0568970:CDS 55.0%
ACCACAATCCACACCAAGCC+CGG - chr4_1:70611948-70611967 None:intergenic 55.0%
CCCCCGATGTGATACAGTTC+AGG + chr4_1:70612191-70612210 Msa0568970:CDS 55.0%
TGCCTGTAGGCCGTACAACT+TGG + chr4_1:70612415-70612434 Msa0568970:intron 55.0%
!! GGTTTGGTGTATGACCCCAC+AGG - chr4_1:70612490-70612509 None:intergenic 55.0%
GTGACCAAATCTCGTGCAGC+GGG + chr4_1:70613044-70613063 Msa0568970:three_prime_UTR 55.0%
GTTGTTGGGGAGTCCGGAGA+CGG - chr4_1:70609856-70609875 None:intergenic 60.0%
TTGTTAGGGAGTCCGGGGAG+CGG - chr4_1:70609970-70609989 None:intergenic 60.0%
GGGACGTGAAGCTCTTGACC+AGG + chr4_1:70610114-70610133 Msa0568970:CDS 60.0%
CCTCATCTCCTGGCCTCAAG+AGG - chr4_1:70610667-70610686 None:intergenic 60.0%
CCTCTTGAGGCCAGGAGATG+AGG + chr4_1:70610664-70610683 Msa0568970:intron 60.0%
CATCAGCTTGCCGAGGATGG+TGG + chr4_1:70610998-70611017 Msa0568970:intron 60.0%
!! CCGAGGATGGTGGACTTGAC+TGG + chr4_1:70611008-70611027 Msa0568970:CDS 60.0%
CCACAATCCACACCAAGCCC+GGG - chr4_1:70611947-70611966 None:intergenic 60.0%
TATCACATCGGGGGACGCGA+GGG - chr4_1:70612185-70612204 None:intergenic 60.0%
CCAGGAGTGGTACCCGCAAT+TGG - chr4_1:70612511-70612530 None:intergenic 60.0%
CCAATTGCGGGTACCACTCC+TGG + chr4_1:70612508-70612527 Msa0568970:CDS 60.0%
CTCACCCGCTGCACGAGATT+TGG - chr4_1:70613051-70613070 None:intergenic 60.0%
GGGAGTCCGGAGACGGCAAT+GGG - chr4_1:70609849-70609868 None:intergenic 65.0%
!! CCCGGGCTTGGTGTGGATTG+TGG + chr4_1:70611944-70611963 Msa0568970:CDS 65.0%
GTATCACATCGGGGGACGCG+AGG - chr4_1:70612186-70612205 None:intergenic 65.0%
GGGGAGTCCGGAGACGGCAA+TGG - chr4_1:70609850-70609869 None:intergenic 70.0%
GGAGTCCGGGGAGCGGCAAT+GGG - chr4_1:70609963-70609982 None:intergenic 70.0%
CACCAAGCCCGGGCGCAGAA+AGG - chr4_1:70611937-70611956 None:intergenic 70.0%
!! TTCTGCGCCCGGGCTTGGTG+TGG + chr4_1:70611937-70611956 Msa0568970:CDS 70.0%
GGGAGTCCGGGGAGCGGCAA+TGG - chr4_1:70609964-70609983 None:intergenic 75.0%
GCAGCGCGCCTTTCTGCGCC+CGG + chr4_1:70611926-70611945 Msa0568970:CDS 75.0%
CAGCGCGCCTTTCTGCGCCC+GGG + chr4_1:70611927-70611946 Msa0568970:CDS 75.0%
CGCCTTTCTGCGCCCGGGCT+TGG + chr4_1:70611932-70611951 Msa0568970:CDS 75.0%
CATCGGGGGACGCGAGGGAG+TGG - chr4_1:70612180-70612199 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70608974 70613363 70608974 ID=Msa0568970;Name=Msa0568970
chr4_1 mRNA 70608974 70613363 70608974 ID=Msa0568970-mRNA-1;Parent=Msa0568970;Name=Msa0568970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.7|0.63|1|1|0.90|11|428|441
chr4_1 exon 70608974 70609159 70608974 ID=Msa0568970-mRNA-1:exon:23851;Parent=Msa0568970-mRNA-1
chr4_1 exon 70609241 70609358 70609241 ID=Msa0568970-mRNA-1:exon:23852;Parent=Msa0568970-mRNA-1
chr4_1 exon 70610110 70610183 70610110 ID=Msa0568970-mRNA-1:exon:23853;Parent=Msa0568970-mRNA-1
chr4_1 exon 70610814 70610927 70610814 ID=Msa0568970-mRNA-1:exon:23854;Parent=Msa0568970-mRNA-1
chr4_1 exon 70611004 70611153 70611004 ID=Msa0568970-mRNA-1:exon:23855;Parent=Msa0568970-mRNA-1
chr4_1 exon 70611669 70611746 70611669 ID=Msa0568970-mRNA-1:exon:23856;Parent=Msa0568970-mRNA-1
chr4_1 exon 70611824 70612045 70611824 ID=Msa0568970-mRNA-1:exon:23857;Parent=Msa0568970-mRNA-1
chr4_1 exon 70612126 70612212 70612126 ID=Msa0568970-mRNA-1:exon:23858;Parent=Msa0568970-mRNA-1
chr4_1 exon 70612424 70612543 70612424 ID=Msa0568970-mRNA-1:exon:23859;Parent=Msa0568970-mRNA-1
chr4_1 exon 70612675 70612771 70612675 ID=Msa0568970-mRNA-1:exon:23860;Parent=Msa0568970-mRNA-1
chr4_1 exon 70612856 70613363 70612856 ID=Msa0568970-mRNA-1:exon:23861;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70608974 70609159 70608974 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70609241 70609358 70609241 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70610110 70610183 70610110 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70610814 70610927 70610814 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70611004 70611153 70611004 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70611669 70611746 70611669 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70611824 70612045 70611824 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70612126 70612212 70612126 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70612424 70612543 70612424 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70612675 70612771 70612675 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 CDS 70612856 70612935 70612856 ID=Msa0568970-mRNA-1:cds;Parent=Msa0568970-mRNA-1
chr4_1 three_prime_UTR 70612936 70613363 70612936 ID=Msa0568970-mRNA-1:three_prime_utr;Parent=Msa0568970-mRNA-1
Gene Sequence

>Msa0568970

ATAATTGAAAGAAAAACAAAAACAGAACGAAAAAGAACAAAAGATAAGGAGGGAAGAAGAATGTTGAGCATAACCTGCGCCTTCTCTGCTTATCCTACGCATCCCGTTCGAATCTCCATTCCAACAACATCTACCATTCGCTATGCCTCTCGCTTCTCTGTTCCTATCAATCCCTTCGTTCCAGAGGTTATTGAAGCCGTTGATGCATTGAATTCAGAATTCAGAGCAGTGGATAATTTAGTTGCATACAATACCACCCGTGTTCTTAAAGCTTTTCACAATGCTCGACTTGGTTCTCATGTATCTGGGGGACGTGAAGCTCTTGACCAGGCTTTTGCAGAAATTGTTGGAGCAGAATCAGCTATTGTTCGTTCACAGCTTTTGGCAGTTGCTGGTGCTCCATATGACACATTAGAGGAAGTAATTGGGAAAAGGGACTCTGGTGGTTTGGGTTCCCTTCAAGATTTTGGGGTGAAATACCGAGAAGTTCCGCTTGCCGAGGATGGTGGACTTGACTGGAATGCACTGATGCATGCTGTCAAACCCGAAACAAAATGTGCACTCATACAGAGGTCATGTGGTTATTCATGGCGTCAGAGTTTGAGTGTTAATGACATAGGGAGAGCGATACAAATTATCAAAATGCAAAATCCTGAGTGTTCGGTCATGGTGGATAATTGCTATGGGGAACTTGTGGAAGGCATTGAACCTCCCATGGTGGGTGCAGATTTGATGGCAGGCAGTTTGATAAAGAATCCTGGTGGAACGATTGCTCCATGTGGCGGATATGTTGCTGGGAAAAAGAAATTGGTTGAAGCAGCTGCAGCGCGCCTTTCTGCGCCCGGGCTTGGTGTGGATTGTGGTTCAACTCCCGGTGATATCATGAGAGCCTTTTTTCAGGGATTATTTCTTTCACCTCAAATGGTTGGGGAAGCAATCAAGGGTTCCTTCCTGATTGCTGAAGTTCTGGCATCTAAGGGTTATAAAGTGCAGCCACTCCCTCGCGTCCCCCGATGTGATACAGTTCAGGCCGTACAACTTGGAAGCCGTGAGCGTCTCCTTGCTTTTTGTGAGGCTGTTCAGAGAAGCTCTCCTGTGGGGTCATACACCAAACCAATTGCGGGTACCACTCCTGGATATGCATCAGAGGTTATCTTTGCCGATGGAACCTTTATTGATGGAAGTACTAGTGAGCTTTCATGTGATGGACCTTTTAGAGAGCCATTTGCTGTATTTTGCCAGGCATGGTGGCACTCATTGGACTCAATGGGGACTAGTCCTAGGAGAAGTTCTGAAATCTATATGATGGAATCTAAATTTCTATAA

Protein sequence

>Msa0568970

IIERKTKTERKRTKDKEGRRMLSITCAFSAYPTHPVRISIPTTSTIRYASRFSVPINPFVPEVIEAVDALNSEFRAVDNLVAYNTTRVLKAFHNARLGSHVSGGREALDQAFAEIVGAESAIVRSQLLAVAGAPYDTLEEVIGKRDSGGLGSLQDFGVKYREVPLAEDGGLDWNALMHAVKPETKCALIQRSCGYSWRQSLSVNDIGRAIQIIKMQNPECSVMVDNCYGELVEGIEPPMVGADLMAGSLIKNPGGTIAPCGGYVAGKKKLVEAAAARLSAPGLGVDCGSTPGDIMRAFFQGLFLSPQMVGEAIKGSFLIAEVLASKGYKVQPLPRVPRCDTVQAVQLGSRERLLAFCEAVQRSSPVGSYTKPIAGTTPGYASEVIFADGTFIDGSTSELSCDGPFREPFAVFCQAWWHSLDSMGTSPRRSSEIYMMESKFL*