AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0176710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176710 MtrunA17_Chr1g0199231 97.304 408 11 0 1 408 1 408 0.0 818
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176710 AT2G39140.1 61.290 403 133 5 14 402 16 409 2.83e-162 462
Msa0176710 AT2G39140.2 61.558 385 125 5 14 384 16 391 2.00e-154 442
Msa0176710 AT3G43340.1 72.603 73 20 0 312 384 2 74 5.68e-32 116

Find 142 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCGTGCTTATTCATATT+TGG 0.134796 1_4:+63249578 Msa0176710:three_prime_UTR
AGAGAAAGAGATGTTGAATT+TGG 0.164387 1_4:-63245217 None:intergenic
TGAGGAGCGGGCTTGGGTTT+GGG 0.169817 1_4:-63245249 None:intergenic
CGCCTTGATGTTGCAACTAC+TGG 0.226708 1_4:+63247120 Msa0176710:CDS
CTGAGGAGCGGGCTTGGGTT+TGG 0.226899 1_4:-63245250 None:intergenic
AGCCATTTCTTTGAGAAAAC+TGG 0.244618 1_4:-63245379 None:intergenic
AATTGTTGTTCCCTCACTTA+TGG 0.249775 1_4:-63247657 None:intergenic
GAGGAGCGGGCTTGGGTTTG+GGG 0.258163 1_4:-63245248 None:intergenic
TTTGGGCTGAGGAGCGGGCT+TGG 0.259088 1_4:-63245256 None:intergenic
GGGCTTGGGTTTGGGGTTAG+AGG 0.261689 1_4:-63245241 None:intergenic
AGAAGTAAGTTTGGTTGATT+TGG 0.262141 1_4:-63245154 None:intergenic
CGCTGTCACCGCACGAATCT+TGG 0.269583 1_4:-63245475 None:intergenic
CCATTTCTTCTTCGAATTGC+AGG 0.271506 1_4:-63245086 None:intergenic
ACTTTGTGAGGCTGCCTCTT+AGG 0.304224 1_4:-63246671 None:intergenic
AGATACATTGCAACAGTTAA+TGG 0.307477 1_4:+63247608 Msa0176710:intron
GAATTGCAGGGAATTAAAAC+TGG 0.314576 1_4:-63245073 None:intergenic
AAAGCTAATTCTTAATTTGT+TGG 0.315258 1_4:+63249543 Msa0176710:exon
CACAGGTACATATGCTCATC+TGG 0.322263 1_4:+63246812 Msa0176710:intron
ATTCTATAATGAAAATATTA+AGG 0.324555 1_4:+63245527 Msa0176710:CDS
TTGGGCTGAGGAGCGGGCTT+GGG 0.325629 1_4:-63245255 None:intergenic
TTGCCTAAACTAACATCATT+AGG 0.328433 1_4:-63249920 None:intergenic
CATGCATGAGGTTGGGATAT+TGG 0.342323 1_4:+63249837 Msa0176710:three_prime_UTR
CTGATGCACGGGGCATTACT+TGG 0.344352 1_4:+63249661 Msa0176710:three_prime_UTR
TAACCTAATGATGTTAGTTT+AGG 0.348833 1_4:+63249917 Msa0176710:three_prime_UTR
TCCAATAGCTCAAATCAAAA+AGG 0.351177 1_4:-63249636 None:intergenic
TATGTATTGTAATTTGTAAA+TGG 0.358645 1_4:+63249878 Msa0176710:three_prime_UTR
AAAGGCAAGGTTACTGTTAA+CGG 0.361362 1_4:+63246144 Msa0176710:CDS
GGAAGTAACTCCACACTATC+AGG 0.364773 1_4:-63247698 None:intergenic
CCTTCGTCATCGTCGTTGTC+GGG 0.377057 1_4:-63245288 None:intergenic
GAAAGAGATGTTGAATTTGG+AGG 0.384878 1_4:-63245214 None:intergenic
CCTGCAATTCGAAGAAGAAA+TGG 0.389883 1_4:+63245086 Msa0176710:exon
GATGTTGAATTTGGAGGAGG+AGG 0.399583 1_4:-63245208 None:intergenic
GCGGAAGGTAGAAGTAAGTT+TGG 0.404517 1_4:-63245163 None:intergenic
TACCCGGAGAATAGTATGTA+TGG 0.426015 1_4:-63244996 None:intergenic
ATCCGTTGGCTTTGCATACC+CGG 0.429354 1_4:-63245012 None:intergenic
CTAACATCATTAGGTTATAC+AGG 0.431655 1_4:-63249911 None:intergenic
CATATGCTCATCTGGGGAAA+AGG 0.438768 1_4:+63246820 Msa0176710:CDS
ACCTTCGTCATCGTCGTTGT+CGG 0.439627 1_4:-63245289 None:intergenic
GACATAGATATTATCCTTTG+AGG 0.442041 1_4:-63246633 None:intergenic
CGAAATATCACCTCCGGATG+CGG 0.442888 1_4:-63245583 None:intergenic
AGAGATGTTGAATTTGGAGG+AGG 0.451931 1_4:-63245211 None:intergenic
TCCGACAAATCTAAAAGCAT+TGG 0.454203 1_4:+63249506 Msa0176710:CDS
GCCTTGATGTTGCAACTACT+GGG 0.458959 1_4:+63247121 Msa0176710:CDS
TTCTGCTTTCAGTTGCATCT+AGG 0.459577 1_4:+63246097 Msa0176710:intron
AGTAAGGTTCTCGCCGCATC+CGG 0.460530 1_4:+63245570 Msa0176710:CDS
CACAAAATTTACCCAAGGTC+TGG 0.462522 1_4:-63249313 None:intergenic
CGTGAACTTGTTAAAAGTGC+TGG 0.462857 1_4:+63248493 Msa0176710:CDS
AGTAAGTTTGGTTGATTTGG+TGG 0.464128 1_4:-63245151 None:intergenic
TTAGACTTCCACCAGACCTT+GGG 0.465011 1_4:+63249302 Msa0176710:CDS
AAGGATAATATCTATGTCAA+TGG 0.465940 1_4:+63246638 Msa0176710:CDS
ATATGATCATGCATGAGGTT+GGG 0.468450 1_4:+63249830 Msa0176710:three_prime_UTR
CATATGATCATGCATGAGGT+TGG 0.469802 1_4:+63249829 Msa0176710:three_prime_UTR
CTTGCCTTGAACAAACCAAA+AGG 0.469860 1_4:+63246698 Msa0176710:CDS
TTCGTTTCTATCTTATCCGT+TGG 0.470518 1_4:-63245026 None:intergenic
AGTCGAGATCTTTGTGTATC+CGG 0.473722 1_4:-63247728 None:intergenic
AACCTTACTGAGACGAGTAC+CGG 0.477937 1_4:-63245556 None:intergenic
ACATAGATATTATCCTTTGA+GGG 0.479306 1_4:-63246632 None:intergenic
CTGCAATTCGAAGAAGAAAT+GGG 0.483274 1_4:+63245087 Msa0176710:exon
TTCTGTCTGTAATACACCTC+AGG 0.490860 1_4:+63246167 Msa0176710:CDS
CATTTCTTCTTCGAATTGCA+GGG 0.491259 1_4:-63245085 None:intergenic
GGCTTGGGTTTGGGGTTAGA+GGG 0.491345 1_4:-63245240 None:intergenic
CCGACAAATCTAAAAGCATT+GGG 0.498398 1_4:+63249507 Msa0176710:CDS
AACCCATACATACTATTCTC+CGG 0.501645 1_4:+63244993 Msa0176710:five_prime_UTR
GCTATTGGATTCTGATGCAC+GGG 0.505540 1_4:+63249650 Msa0176710:three_prime_UTR
TTAATGGTCTAGTTCATAAG+AGG 0.509198 1_4:+63247624 Msa0176710:CDS
CGCCCTACAGTAAATAGTCT+TGG 0.512262 1_4:-63247099 None:intergenic
AGCTATTGGATTCTGATGCA+CGG 0.513897 1_4:+63249649 Msa0176710:three_prime_UTR
CTCCGGTACTCGTCTCAGTA+AGG 0.519428 1_4:+63245554 Msa0176710:CDS
TTTAGACTTCCACCAGACCT+TGG 0.520181 1_4:+63249301 Msa0176710:CDS
AGGAGGAACAAGTGAAGCGA+GGG 0.521264 1_4:-63245191 None:intergenic
GCCATTTCTTTGAGAAAACT+GGG 0.522161 1_4:-63245378 None:intergenic
TGGATTGTTCGCGGCGAAGA+TGG 0.524610 1_4:+63245327 Msa0176710:CDS
TTACTTATTGTGACTAATGA+TGG 0.528738 1_4:+63247144 Msa0176710:CDS
TGTGAGGCTGCCTCTTAGGA+AGG 0.533107 1_4:-63246667 None:intergenic
TAAAGCTATCATCAATGAGT+TGG 0.533292 1_4:+63249607 Msa0176710:three_prime_UTR
TGTTAAAAGTGCTGGACTTG+AGG 0.534563 1_4:+63248501 Msa0176710:CDS
AGTGAGGGAACAACAATTGA+GGG 0.534706 1_4:+63247662 Msa0176710:CDS
TGATGCACGGGGCATTACTT+GGG 0.534845 1_4:+63249662 Msa0176710:three_prime_UTR
CCTACAGTAAATAGTCTTGG+TGG 0.537220 1_4:-63247096 None:intergenic
CTTCGTCATCGTCGTTGTCG+GGG 0.537366 1_4:-63245287 None:intergenic
TTGCCTTGAACAAACCAAAA+GGG 0.538722 1_4:+63246699 Msa0176710:CDS
TCTTTGAGAAAACTGGGAGG+AGG 0.540003 1_4:-63245372 None:intergenic
ACCCAGTAGTTGCAACATCA+AGG 0.544365 1_4:-63247122 None:intergenic
ACCCATACATACTATTCTCC+GGG 0.545153 1_4:+63244994 Msa0176710:five_prime_UTR
CTTTGTGTATCCGGCATACG+TGG 0.548725 1_4:-63247719 None:intergenic
ACAGGTACATATGCTCATCT+GGG 0.550256 1_4:+63246813 Msa0176710:intron
CTACAGTAAATAGTCTTGGT+GGG 0.551312 1_4:-63247095 None:intergenic
TCATTAAAGCGAGTTCGCAT+CGG 0.551959 1_4:+63249274 Msa0176710:CDS
ATGATTCCGTGGATTGTTCG+CGG 0.552805 1_4:+63245318 Msa0176710:CDS
TACAGTAAATAGTCTTGGTG+GGG 0.557053 1_4:-63247094 None:intergenic
GGATTCTCATAGGTTCATGA+TGG 0.557261 1_4:+63248454 Msa0176710:intron
TTAAAGCGAGTTCGCATCGG+TGG 0.557346 1_4:+63249277 Msa0176710:CDS
AATGGGTTCAGCGGCAACAA+TGG 0.557684 1_4:+63245104 Msa0176710:exon
AAAATTTACCCAAGGTCTGG+TGG 0.562045 1_4:-63249310 None:intergenic
CCACCAAGACTATTTACTGT+AGG 0.562464 1_4:+63247096 Msa0176710:CDS
CACCAAGACTATTTACTGTA+GGG 0.562854 1_4:+63247097 Msa0176710:CDS
GAAATGGCTAGTGCTCAAAC+CGG 0.566064 1_4:+63245393 Msa0176710:CDS
ATGGAAGCCGCCTTCCTAAG+AGG 0.566262 1_4:+63246657 Msa0176710:CDS
TTGTGGTGTGTAGACTAAAG+TGG 0.567098 1_4:+63246607 Msa0176710:intron
GGAGTTACTTCCACGTATGC+CGG 0.567121 1_4:+63247709 Msa0176710:CDS
AAGTGAGGGAACAACAATTG+AGG 0.568613 1_4:+63247661 Msa0176710:CDS
AAGTTTGGTTGATTTGGTGG+TGG 0.574133 1_4:-63245148 None:intergenic
AAGTGAAGCGAGGGAGAGTG+CGG 0.574272 1_4:-63245182 None:intergenic
AAATTAAACTAGATTGGAAG+CGG 0.579236 1_4:+63249796 Msa0176710:three_prime_UTR
GAAGCGAGGGAGAGTGCGGA+AGG 0.583385 1_4:-63245178 None:intergenic
TCTCATAGGTTCATGATGGA+AGG 0.583436 1_4:+63248458 Msa0176710:intron
TCTTCGCCGCGAACAATCCA+CGG 0.589732 1_4:-63245324 None:intergenic
GACTAAAGTGGATCCCTCAA+AGG 0.589788 1_4:+63246619 Msa0176710:intron
GAAAATATTAAGGAGGACTC+CGG 0.592371 1_4:+63245537 Msa0176710:CDS
TTCGTCATCGTCGTTGTCGG+GGG 0.596006 1_4:-63245286 None:intergenic
ACCCGGAGAATAGTATGTAT+GGG 0.599191 1_4:-63244995 None:intergenic
AAGATCTCGACTTCGTATTG+TGG 0.600050 1_4:+63247739 Msa0176710:CDS
GAGGAGGAACAAGTGAAGCG+AGG 0.603213 1_4:-63245192 None:intergenic
CCACTGTGTACCTGATAGTG+TGG 0.605712 1_4:+63247688 Msa0176710:CDS
AATTGCAGGGAATTAAAACT+GGG 0.610948 1_4:-63245072 None:intergenic
AAGGTTCTCGCCGCATCCGG+AGG 0.618082 1_4:+63245573 Msa0176710:CDS
CGAAGAAGAAATGGGTTCAG+CGG 0.621259 1_4:+63245095 Msa0176710:exon
AAGGCAAGATAAACTTTGTG+AGG 0.621759 1_4:-63246683 None:intergenic
CACTTAACAGCCATAAGTGA+GGG 0.624150 1_4:+63247647 Msa0176710:CDS
GCCGCCGCAGTATTCTAAAG+CGG 0.627655 1_4:+63245497 Msa0176710:CDS
CGCAGTATTCTAAAGCGGCT+AGG 0.629068 1_4:+63245502 Msa0176710:CDS
GCACTTAACAGCCATAAGTG+AGG 0.640429 1_4:+63247646 Msa0176710:CDS
AAGGTCCTCTCATGATTCCG+TGG 0.641693 1_4:+63245307 Msa0176710:CDS
CTCCGGGTATGCAAAGCCAA+CGG 0.645072 1_4:+63245010 Msa0176710:five_prime_UTR
GCATGAGGTTGGGATATTGG+TGG 0.654965 1_4:+63249840 Msa0176710:three_prime_UTR
ACAATCCACGGAATCATGAG+AGG 0.656084 1_4:-63245312 None:intergenic
ACAGTAAATAGTCTTGGTGG+GGG 0.658076 1_4:-63247093 None:intergenic
CAAACGCTCTAGAAAGTCTG+TGG 0.664179 1_4:-63249700 None:intergenic
GCCGCTTTAGAATACTGCGG+CGG 0.665649 1_4:-63245498 None:intergenic
CTATAATGAAAATATTAAGG+AGG 0.665956 1_4:+63245530 Msa0176710:CDS
GAGGCTGCCTCTTAGGAAGG+CGG 0.682208 1_4:-63246664 None:intergenic
CAGGTACATATGCTCATCTG+GGG 0.682298 1_4:+63246814 Msa0176710:intron
TCCAAATATGAATAAGCACG+AGG 0.683150 1_4:-63249579 None:intergenic
CCCGACAACGACGATGACGA+AGG 0.693659 1_4:+63245288 Msa0176710:CDS
ACAAATCTAAAAGCATTGGG+AGG 0.700121 1_4:+63249510 Msa0176710:CDS
AAAGGAAACCAAGATTCGTG+CGG 0.715044 1_4:+63245467 Msa0176710:CDS
CTATTGGATTCTGATGCACG+GGG 0.718864 1_4:+63249651 Msa0176710:three_prime_UTR
ATTTCTTTGAGAAAACTGGG+AGG 0.747999 1_4:-63245375 None:intergenic
CCACACTATCAGGTACACAG+TGG 0.767108 1_4:-63247688 None:intergenic
TTTGACATCATGCCACACAG+AGG 0.768017 1_4:+63249719 Msa0176710:three_prime_UTR
TGATTGCGAGAGCCTCTGTG+TGG 0.771204 1_4:-63249731 None:intergenic
CTAGCCGCTTTAGAATACTG+CGG 0.799546 1_4:-63245501 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTATAATGAAAATATTA+AGG + chr1_4:63245527-63245546 Msa0176710:CDS 10.0%
!! CAAAATTGTTTAATAATATT+AGG + chr1_4:63245791-63245810 Msa0176710:intron 10.0%
!!! TTTCTGTTTTTTTTTTTTTT+TGG - chr1_4:63245953-63245972 None:intergenic 10.0%
!!! TTTTTATTTTTTCTTTTACT+TGG + chr1_4:63246938-63246957 Msa0176710:intron 10.0%
!!! CTTATATTATTTTTCATTTT+TGG + chr1_4:63247502-63247521 Msa0176710:intron 10.0%
!! AAAAATTGAAATATTATTGT+TGG - chr1_4:63249411-63249430 None:intergenic 10.0%
!!! ATTTTATTCATAAATATGTA+AGG - chr1_4:63249968-63249987 None:intergenic 10.0%
!! AATTCTAATTAATATCTAAC+GGG - chr1_4:63246305-63246324 None:intergenic 15.0%
!! CAATTCTAATTAATATCTAA+CGG - chr1_4:63246306-63246325 None:intergenic 15.0%
!! TTATCTTAGAAATAATAACA+CGG - chr1_4:63247529-63247548 None:intergenic 15.0%
!! ATTTAAGCAATAAATAATAC+AGG + chr1_4:63248295-63248314 Msa0176710:intron 15.0%
!! GTAAAAAAATTAAACTAGAT+TGG + chr1_4:63249790-63249809 Msa0176710:three_prime_UTR 15.0%
!!! TATGTATTGTAATTTGTAAA+TGG + chr1_4:63249878-63249897 Msa0176710:three_prime_UTR 15.0%
!!! TTTTCTTGTTTTTGGTAATT+TGG - chr1_4:63245440-63245459 None:intergenic 20.0%
!! CTATAATGAAAATATTAAGG+AGG + chr1_4:63245530-63245549 Msa0176710:CDS 20.0%
!!! TTTCTATCCAGTTTTATTAA+AGG + chr1_4:63245623-63245642 Msa0176710:intron 20.0%
!!! CCTTGCATATATTTTTTTTT+TGG - chr1_4:63245921-63245940 None:intergenic 20.0%
!! CCAAAAAAAAAATATATGCA+AGG + chr1_4:63245918-63245937 Msa0176710:intron 20.0%
!! CGTTAGATATTAATTAGAAT+TGG + chr1_4:63246304-63246323 Msa0176710:intron 20.0%
!! TTAGTAGTCAATATTGTTTA+AGG - chr1_4:63246473-63246492 None:intergenic 20.0%
!!! ATACAATTTTCTGTCTTTTT+AGG + chr1_4:63246981-63247000 Msa0176710:intron 20.0%
!! TTATCTAATACTTTATCCAA+TGG + chr1_4:63247240-63247259 Msa0176710:intron 20.0%
!!! TCTTTTGAAAAATTAGATGA+CGG - chr1_4:63247305-63247324 None:intergenic 20.0%
!! TTATTTAAACTTCAAAGCAA+AGG + chr1_4:63248115-63248134 Msa0176710:intron 20.0%
!! TAACGAAGTATATGTATTAA+AGG - chr1_4:63248530-63248549 None:intergenic 20.0%
!!! AAATCAAGCTTAAAGATTTT+TGG + chr1_4:63248835-63248854 Msa0176710:intron 20.0%
!!! AAATCAAGCTTAAAGATTTT+TGG + chr1_4:63248835-63248854 Msa0176710:intron 20.0%
!! AAGAAAAATAAGAGAATTTG+TGG - chr1_4:63249101-63249120 None:intergenic 20.0%
!!! CAATTTTTTTTTGGTACAAA+TGG + chr1_4:63249423-63249442 Msa0176710:intron 20.0%
!!! AAAGCTAATTCTTAATTTGT+TGG + chr1_4:63249543-63249562 Msa0176710:exon 20.0%
!!! CTACATATTTTAGAAGAATT+GGG + chr1_4:63249768-63249787 Msa0176710:three_prime_UTR 20.0%
! AAAGAAAAAAAGATACTGAG+AGG + chr1_4:63244969-63244988 Msa0176710:five_prime_UTR 25.0%
! AAGAAAAAAAGATACTGAGA+GGG + chr1_4:63244970-63244989 Msa0176710:five_prime_UTR 25.0%
!!! TTCACTCTTTTTCTTGTTTT+TGG - chr1_4:63245448-63245467 None:intergenic 25.0%
! AAACAAGAAAAAGAGTGAAA+AGG + chr1_4:63245449-63245468 Msa0176710:CDS 25.0%
! GGATAGAAATTGAAAGTAAA+TGG - chr1_4:63245612-63245631 None:intergenic 25.0%
! AAAAAAATATATGCAAGGTC+TGG + chr1_4:63245923-63245942 Msa0176710:intron 25.0%
! AAAAAATATATGCAAGGTCT+GGG + chr1_4:63245924-63245943 Msa0176710:intron 25.0%
! AATTTGGAGAAATTTCACAA+TGG - chr1_4:63246204-63246223 None:intergenic 25.0%
! TTGTGAAATTTCTCCAAATT+AGG + chr1_4:63246204-63246223 Msa0176710:intron 25.0%
! GAATTGGTTAAGATTGTTTA+AGG + chr1_4:63246320-63246339 Msa0176710:intron 25.0%
! TAGTTATGATAGTTAGAAGT+TGG + chr1_4:63246355-63246374 Msa0176710:intron 25.0%
! GGTTATATTAGTTATACGTT+AGG + chr1_4:63246376-63246395 Msa0176710:intron 25.0%
!! CTTCTAGAAATTAATGTTTC+TGG + chr1_4:63246566-63246585 Msa0176710:intron 25.0%
!! TTATGAGAAAAACACTTTTG+TGG + chr1_4:63246590-63246609 Msa0176710:intron 25.0%
! ACATAGATATTATCCTTTGA+GGG - chr1_4:63246635-63246654 None:intergenic 25.0%
! AAGGATAATATCTATGTCAA+TGG + chr1_4:63246638-63246657 Msa0176710:CDS 25.0%
!! TATCATTTTACATACCCTTT+TGG - chr1_4:63246716-63246735 None:intergenic 25.0%
! CTATGCAAATGAATTCAAAA+GGG + chr1_4:63246743-63246762 Msa0176710:intron 25.0%
! GGAGAGAACATTATTATAAA+TGG - chr1_4:63247025-63247044 None:intergenic 25.0%
!!! ATAAAATTGTTTTCAGGTGA+TGG - chr1_4:63247046-63247065 None:intergenic 25.0%
!! CTGGAAATAAAATTGTTTTC+AGG - chr1_4:63247052-63247071 None:intergenic 25.0%
!!! CTGAAAACAATTTTATTTCC+AGG + chr1_4:63247050-63247069 Msa0176710:intron 25.0%
! TTACTTATTGTGACTAATGA+TGG + chr1_4:63247144-63247163 Msa0176710:CDS 25.0%
!! TTTTTGCTAGGACTTTATAA+AGG + chr1_4:63247426-63247445 Msa0176710:intron 25.0%
!! ACATTATTACGTTTTATGCA+TGG + chr1_4:63247479-63247498 Msa0176710:intron 25.0%
!! TAATCCATACTTAGTGTTTT+AGG + chr1_4:63247903-63247922 Msa0176710:intron 25.0%
! TATTCCTAAAACACTAAGTA+TGG - chr1_4:63247910-63247929 None:intergenic 25.0%
!!! TACTTAGTGTTTTAGGAATA+TGG + chr1_4:63247910-63247929 Msa0176710:intron 25.0%
!! TTTGAAGTTTAAATAAGAGG+TGG - chr1_4:63248111-63248130 None:intergenic 25.0%
!!! TGCTTTGAAGTTTAAATAAG+AGG - chr1_4:63248114-63248133 None:intergenic 25.0%
! AAAAAATTGAACATTCACGT+GGG - chr1_4:63248145-63248164 None:intergenic 25.0%
! AAAAAAATTGAACATTCACG+TGG - chr1_4:63248146-63248165 None:intergenic 25.0%
!!! GGTCAGAGTTTTTTTTAAAA+AGG - chr1_4:63248232-63248251 None:intergenic 25.0%
! AATGCTTGCTTGATTTAATT+TGG + chr1_4:63248433-63248452 Msa0176710:intron 25.0%
!!! GATTTAATTTGGATTCTCAT+AGG + chr1_4:63248444-63248463 Msa0176710:intron 25.0%
!!! ACATGGAGAGTATTATATTA+TGG - chr1_4:63248738-63248757 None:intergenic 25.0%
!! GATGTATTTTACATAAAGCA+AGG - chr1_4:63248811-63248830 None:intergenic 25.0%
!! GATGTATTTTACATAAAGCA+AGG - chr1_4:63248811-63248830 None:intergenic 25.0%
! TGATGGCAACATATAATAAA+GGG + chr1_4:63248989-63249008 Msa0176710:intron 25.0%
! TATAGTCACTCATTTATCTT+GGG - chr1_4:63249210-63249229 None:intergenic 25.0%
!!! GCTACATATTTTAGAAGAAT+TGG + chr1_4:63249767-63249786 Msa0176710:three_prime_UTR 25.0%
! AAATTAAACTAGATTGGAAG+CGG + chr1_4:63249796-63249815 Msa0176710:three_prime_UTR 25.0%
!! TAACCTAATGATGTTAGTTT+AGG + chr1_4:63249917-63249936 Msa0176710:three_prime_UTR 25.0%
AATTGCAGGGAATTAAAACT+GGG - chr1_4:63245075-63245094 None:intergenic 30.0%
AGAAGTAAGTTTGGTTGATT+TGG - chr1_4:63245157-63245176 None:intergenic 30.0%
AGAGAAAGAGATGTTGAATT+TGG - chr1_4:63245220-63245239 None:intergenic 30.0%
!!! AGTTTTATTAAAGGCGTGTT+CGG + chr1_4:63245632-63245651 Msa0176710:intron 30.0%
GACAATGCATAATATATGCA+AGG + chr1_4:63245886-63245905 Msa0176710:intron 30.0%
AAAAATATATGCAAGGTCTG+GGG + chr1_4:63245925-63245944 Msa0176710:intron 30.0%
! TGCGAAGAGCTAATTTTTAA+AGG + chr1_4:63246126-63246145 Msa0176710:CDS 30.0%
!! AGAGCTAATTTTTAAAGGCA+AGG + chr1_4:63246131-63246150 Msa0176710:CDS 30.0%
TGCTGCTAAAAAACCTAATT+TGG - chr1_4:63246220-63246239 None:intergenic 30.0%
GTTAATATACCATGACTTCA+TGG + chr1_4:63246250-63246269 Msa0176710:intron 30.0%
!! ATCTAACGGGTTAGATAAAA+TGG - chr1_4:63246292-63246311 None:intergenic 30.0%
TACGTTAGGATCACTATATA+AGG + chr1_4:63246390-63246409 Msa0176710:intron 30.0%
!! GAATGAACAAGTTGATATGA+TGG - chr1_4:63246427-63246446 None:intergenic 30.0%
GACATAGATATTATCCTTTG+AGG - chr1_4:63246636-63246655 None:intergenic 30.0%
! CCTTTTGAATTCATTTGCAT+AGG - chr1_4:63246745-63246764 None:intergenic 30.0%
CCTATGCAAATGAATTCAAA+AGG + chr1_4:63246742-63246761 Msa0176710:intron 30.0%
ATGTAATTGCATCACTTATC+AGG - chr1_4:63246789-63246808 None:intergenic 30.0%
! TGATGCAATTACATTTTCAC+AGG + chr1_4:63246795-63246814 Msa0176710:intron 30.0%
!!! TTGATGATTTTTTGAGCAGT+TGG + chr1_4:63246867-63246886 Msa0176710:CDS 30.0%
!!! TGATGATTTTTTGAGCAGTT+GGG + chr1_4:63246868-63246887 Msa0176710:CDS 30.0%
CCAAACTAATGAAAAAGTTC+AGG - chr1_4:63247361-63247380 None:intergenic 30.0%
!!! CCTGAACTTTTTCATTAGTT+TGG + chr1_4:63247358-63247377 Msa0176710:intron 30.0%
TAGAAAATGAGAGAAATCAC+AGG - chr1_4:63247567-63247586 None:intergenic 30.0%
AGATACATTGCAACAGTTAA+TGG + chr1_4:63247608-63247627 Msa0176710:intron 30.0%
! TTAATGGTCTAGTTCATAAG+AGG + chr1_4:63247624-63247643 Msa0176710:CDS 30.0%
AAAAATTCACAACCAGTGTT+GGG - chr1_4:63247805-63247824 None:intergenic 30.0%
TAAAAATTCACAACCAGTGT+TGG - chr1_4:63247806-63247825 None:intergenic 30.0%
AGTCAATAACTTCATGCTTA+CGG - chr1_4:63247940-63247959 None:intergenic 30.0%
!! AAGAGTTCTAGAACAAAATG+GGG - chr1_4:63248186-63248205 None:intergenic 30.0%
!! CAAGAGTTCTAGAACAAAAT+GGG - chr1_4:63248187-63248206 None:intergenic 30.0%
!! TCAAGAGTTCTAGAACAAAA+TGG - chr1_4:63248188-63248207 None:intergenic 30.0%
! ATCTTGATAATTCAGATACG+AGG - chr1_4:63248331-63248350 None:intergenic 30.0%
TCGTATCTGAATTATCAAGA+TGG + chr1_4:63248330-63248349 Msa0176710:intron 30.0%
TTGTCTAGTATGAGAACTTT+GGG - chr1_4:63248627-63248646 None:intergenic 30.0%
ATTGTCTAGTATGAGAACTT+TGG - chr1_4:63248628-63248647 None:intergenic 30.0%
ATAGACAATGTCAAACAACA+TGG - chr1_4:63248755-63248774 None:intergenic 30.0%
!!! AAGCTTAAAGATTTTTGGTG+TGG + chr1_4:63248840-63248859 Msa0176710:intron 30.0%
!!! AAGCTTAAAGATTTTTGGTG+TGG + chr1_4:63248840-63248859 Msa0176710:intron 30.0%
GTGATGGCAACATATAATAA+AGG + chr1_4:63248988-63249007 Msa0176710:intron 30.0%
GATGGCAACATATAATAAAG+GGG + chr1_4:63248990-63249009 Msa0176710:intron 30.0%
AGGTATCTTATCATTGGATT+CGG + chr1_4:63249030-63249049 Msa0176710:intron 30.0%
AGATCTATAGACATCATACA+AGG - chr1_4:63249143-63249162 None:intergenic 30.0%
ATAGTCACTCATTTATCTTG+GGG - chr1_4:63249209-63249228 None:intergenic 30.0%
GTATAGTCACTCATTTATCT+TGG - chr1_4:63249211-63249230 None:intergenic 30.0%
! AAAAGCACAAAATTTACCCA+AGG - chr1_4:63249321-63249340 None:intergenic 30.0%
!! TTGTACTTTTATTTCAGGCT+AGG + chr1_4:63249465-63249484 Msa0176710:intron 30.0%
!! TGTACTTTTATTTCAGGCTA+GGG + chr1_4:63249466-63249485 Msa0176710:intron 30.0%
TAAAGCTATCATCAATGAGT+TGG + chr1_4:63249607-63249626 Msa0176710:three_prime_UTR 30.0%
TCCAATAGCTCAAATCAAAA+AGG - chr1_4:63249639-63249658 None:intergenic 30.0%
! TTTTCATATGATCATGCATG+AGG + chr1_4:63249825-63249844 Msa0176710:three_prime_UTR 30.0%
CTAACATCATTAGGTTATAC+AGG - chr1_4:63249914-63249933 None:intergenic 30.0%
TTGCCTAAACTAACATCATT+AGG - chr1_4:63249923-63249942 None:intergenic 30.0%
AACCCATACATACTATTCTC+CGG + chr1_4:63244993-63245012 Msa0176710:five_prime_UTR 35.0%
TTCGTTTCTATCTTATCCGT+TGG - chr1_4:63245029-63245048 None:intergenic 35.0%
GAATTGCAGGGAATTAAAAC+TGG - chr1_4:63245076-63245095 None:intergenic 35.0%
CATTTCTTCTTCGAATTGCA+GGG - chr1_4:63245088-63245107 None:intergenic 35.0%
CTGCAATTCGAAGAAGAAAT+GGG + chr1_4:63245087-63245106 Msa0176710:exon 35.0%
!! AGTAAGTTTGGTTGATTTGG+TGG - chr1_4:63245154-63245173 None:intergenic 35.0%
GAAAGAGATGTTGAATTTGG+AGG - chr1_4:63245217-63245236 None:intergenic 35.0%
! ATTTCTTTGAGAAAACTGGG+AGG - chr1_4:63245378-63245397 None:intergenic 35.0%
! TCCCAGTTTTCTCAAAGAAA+TGG + chr1_4:63245377-63245396 Msa0176710:CDS 35.0%
! GCCATTTCTTTGAGAAAACT+GGG - chr1_4:63245381-63245400 None:intergenic 35.0%
! AGCCATTTCTTTGAGAAAAC+TGG - chr1_4:63245382-63245401 None:intergenic 35.0%
!!! CTTCTCTGATTTTTTGGTAC+CGG - chr1_4:63245415-63245434 None:intergenic 35.0%
!!! TTGGTCCTTCTCTGATTTTT+TGG - chr1_4:63245421-63245440 None:intergenic 35.0%
GAAAATATTAAGGAGGACTC+CGG + chr1_4:63245537-63245556 Msa0176710:CDS 35.0%
GAACACGCCTTTAATAAAAC+TGG - chr1_4:63245633-63245652 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG + chr1_4:63245891-63245910 Msa0176710:intron 35.0%
GCATAATATATGCAAGGTCT+GGG + chr1_4:63245892-63245911 Msa0176710:intron 35.0%
CATAATATATGCAAGGTCTG+GGG + chr1_4:63245893-63245912 Msa0176710:intron 35.0%
!! GTTTAGCTTGAAAAGTAGAG+AGG + chr1_4:63245992-63246011 Msa0176710:intron 35.0%
ACACATTTAGTCCAGTACTT+TGG - chr1_4:63246053-63246072 None:intergenic 35.0%
AAAGGCAAGGTTACTGTTAA+CGG + chr1_4:63246144-63246163 Msa0176710:CDS 35.0%
AAGGCAAGATAAACTTTGTG+AGG - chr1_4:63246686-63246705 None:intergenic 35.0%
TTGCCTTGAACAAACCAAAA+GGG + chr1_4:63246699-63246718 Msa0176710:CDS 35.0%
!!! ATACCCTTTTGGTTTGTTCA+AGG - chr1_4:63246705-63246724 None:intergenic 35.0%
ATTGCATCACTTATCAGGAT+AGG - chr1_4:63246784-63246803 None:intergenic 35.0%
! TACAGTAAATAGTCTTGGTG+GGG - chr1_4:63247097-63247116 None:intergenic 35.0%
! CTACAGTAAATAGTCTTGGT+GGG - chr1_4:63247098-63247117 None:intergenic 35.0%
CACCAAGACTATTTACTGTA+GGG + chr1_4:63247097-63247116 Msa0176710:CDS 35.0%
TTGTGACTAATGATGGTATG+TGG + chr1_4:63247151-63247170 Msa0176710:intron 35.0%
TATCTCTGTTGAGTGAATAG+TGG + chr1_4:63247193-63247212 Msa0176710:intron 35.0%
TGGATTTGTATCGCATGTAT+AGG + chr1_4:63247378-63247397 Msa0176710:intron 35.0%
! AATTGTTGTTCCCTCACTTA+TGG - chr1_4:63247660-63247679 None:intergenic 35.0%
TGTTTCATGTGACACTACTT+TGG + chr1_4:63247961-63247980 Msa0176710:intron 35.0%
CAGAGATATCTACATACATG+TGG - chr1_4:63248007-63248026 None:intergenic 35.0%
! TTTTCTTTGACTGCAGTCAT+AGG + chr1_4:63248041-63248060 Msa0176710:intron 35.0%
!! CAAGATGGCTTCTTTTTAGT+CGG + chr1_4:63248345-63248364 Msa0176710:intron 35.0%
! TAGAACTTTGGGCATTTTGA+GGG - chr1_4:63248558-63248577 None:intergenic 35.0%
! TTAGAACTTTGGGCATTTTG+AGG - chr1_4:63248559-63248578 None:intergenic 35.0%
TGCTCAAGCATTAGAACTTT+GGG - chr1_4:63248569-63248588 None:intergenic 35.0%
ATGCTCAAGCATTAGAACTT+TGG - chr1_4:63248570-63248589 None:intergenic 35.0%
TGTCTAGTATGAGAACTTTG+GGG - chr1_4:63248626-63248645 None:intergenic 35.0%
TTCCGTGTTTCACATTTCTT+AGG + chr1_4:63248650-63248669 Msa0176710:intron 35.0%
CTCCTAAGAAATGTGAAACA+CGG - chr1_4:63248655-63248674 None:intergenic 35.0%
!!! AGATTTTTGGTGTGGCATAT+AGG + chr1_4:63248848-63248867 Msa0176710:intron 35.0%
!!! AGATTTTTGGTGTGGCATAT+AGG + chr1_4:63248848-63248867 Msa0176710:intron 35.0%
GGAAATTTGACATGATGTGA+TGG + chr1_4:63248972-63248991 Msa0176710:intron 35.0%
GGGATTAAGATTTAAGAGTG+AGG + chr1_4:63249010-63249029 Msa0176710:intron 35.0%
! AGAGTGAGGTATCTTATCAT+TGG + chr1_4:63249024-63249043 Msa0176710:intron 35.0%
GGTATCTTATCATTGGATTC+GGG + chr1_4:63249031-63249050 Msa0176710:intron 35.0%
GTATCTTATCATTGGATTCG+GGG + chr1_4:63249032-63249051 Msa0176710:intron 35.0%
TATCTTATCATTGGATTCGG+GGG + chr1_4:63249033-63249052 Msa0176710:intron 35.0%
! TCCGACAAATCTAAAAGCAT+TGG + chr1_4:63249506-63249525 Msa0176710:CDS 35.0%
! CCCAATGCTTTTAGATTTGT+CGG - chr1_4:63249510-63249529 None:intergenic 35.0%
!! CCGACAAATCTAAAAGCATT+GGG + chr1_4:63249507-63249526 Msa0176710:CDS 35.0%
!! ACAAATCTAAAAGCATTGGG+AGG + chr1_4:63249510-63249529 Msa0176710:CDS 35.0%
TCCTCGTGCTTATTCATATT+TGG + chr1_4:63249578-63249597 Msa0176710:three_prime_UTR 35.0%
TCCAAATATGAATAAGCACG+AGG - chr1_4:63249582-63249601 None:intergenic 35.0%
! AGCTCAAATCAAAAAGGCAT+TGG - chr1_4:63249633-63249652 None:intergenic 35.0%
!!! GCCTTTTTGATTTGAGCTAT+TGG + chr1_4:63249635-63249654 Msa0176710:three_prime_UTR 35.0%
ATATGATCATGCATGAGGTT+GGG + chr1_4:63249830-63249849 Msa0176710:three_prime_UTR 35.0%
ACCCATACATACTATTCTCC+GGG + chr1_4:63244994-63245013 Msa0176710:five_prime_UTR 40.0%
ACCCGGAGAATAGTATGTAT+GGG - chr1_4:63244998-63245017 None:intergenic 40.0%
TACCCGGAGAATAGTATGTA+TGG - chr1_4:63244999-63245018 None:intergenic 40.0%
CCATTTCTTCTTCGAATTGC+AGG - chr1_4:63245089-63245108 None:intergenic 40.0%
CCTGCAATTCGAAGAAGAAA+TGG + chr1_4:63245086-63245105 Msa0176710:exon 40.0%
!! AAGTTTGGTTGATTTGGTGG+TGG - chr1_4:63245151-63245170 None:intergenic 40.0%
AGAGATGTTGAATTTGGAGG+AGG - chr1_4:63245214-63245233 None:intergenic 40.0%
CGGTACCAAAAAATCAGAGA+AGG + chr1_4:63245413-63245432 Msa0176710:CDS 40.0%
AAAGGAAACCAAGATTCGTG+CGG + chr1_4:63245467-63245486 Msa0176710:CDS 40.0%
! TGGTAACGAAATATCACCTC+CGG - chr1_4:63245592-63245611 None:intergenic 40.0%
TGTAATCAGAATAGCCAGTG+TGG - chr1_4:63245673-63245692 None:intergenic 40.0%
TGAGCTTAGCTCAATTGGTA+AGG + chr1_4:63245864-63245883 Msa0176710:intron 40.0%
TTCTGCTTTCAGTTGCATCT+AGG + chr1_4:63246097-63246116 Msa0176710:intron 40.0%
TTCTGTCTGTAATACACCTC+AGG + chr1_4:63246167-63246186 Msa0176710:CDS 40.0%
GGAGAAATTTCACAATGGCA+GGG - chr1_4:63246199-63246218 None:intergenic 40.0%
TGGAGAAATTTCACAATGGC+AGG - chr1_4:63246200-63246219 None:intergenic 40.0%
! AGCTCTAATCCATGAAGTCA+TGG - chr1_4:63246262-63246281 None:intergenic 40.0%
!! ACAAGTTGATATGATGGCGT+AGG - chr1_4:63246421-63246440 None:intergenic 40.0%
TTGTGGTGTGTAGACTAAAG+TGG + chr1_4:63246607-63246626 Msa0176710:intron 40.0%
CTTGCCTTGAACAAACCAAA+AGG + chr1_4:63246698-63246717 Msa0176710:CDS 40.0%
ACAGGTACATATGCTCATCT+GGG + chr1_4:63246813-63246832 Msa0176710:intron 40.0%
!! TTCCAGGATAAAAAGCATCC+AGG + chr1_4:63247066-63247085 Msa0176710:intron 40.0%
! ACAGTAAATAGTCTTGGTGG+GGG - chr1_4:63247096-63247115 None:intergenic 40.0%
! CCTACAGTAAATAGTCTTGG+TGG - chr1_4:63247099-63247118 None:intergenic 40.0%
CCACCAAGACTATTTACTGT+AGG + chr1_4:63247096-63247115 Msa0176710:CDS 40.0%
CCTAGCAAAAATCTTGTGAG+AGG - chr1_4:63247417-63247436 None:intergenic 40.0%
! CCTCTCACAAGATTTTTGCT+AGG + chr1_4:63247414-63247433 Msa0176710:intron 40.0%
AATGAGAGAAATCACAGGAG+TGG - chr1_4:63247562-63247581 None:intergenic 40.0%
CACTTAACAGCCATAAGTGA+GGG + chr1_4:63247647-63247666 Msa0176710:CDS 40.0%
AAGTGAGGGAACAACAATTG+AGG + chr1_4:63247661-63247680 Msa0176710:CDS 40.0%
AGTGAGGGAACAACAATTGA+GGG + chr1_4:63247662-63247681 Msa0176710:CDS 40.0%
AGTCGAGATCTTTGTGTATC+CGG - chr1_4:63247731-63247750 None:intergenic 40.0%
AAGATCTCGACTTCGTATTG+TGG + chr1_4:63247739-63247758 Msa0176710:CDS 40.0%
TCTGACCGTTAACGTGAAAA+TGG + chr1_4:63248245-63248264 Msa0176710:intron 40.0%
CTGACCGTTAACGTGAAAAT+GGG + chr1_4:63248246-63248265 Msa0176710:intron 40.0%
! CATGCCCATTTTCACGTTAA+CGG - chr1_4:63248253-63248272 None:intergenic 40.0%
GGCATGTCGTATGGTAAAAT+TGG + chr1_4:63248267-63248286 Msa0176710:intron 40.0%
GGATTCTCATAGGTTCATGA+TGG + chr1_4:63248454-63248473 Msa0176710:intron 40.0%
! TCTCATAGGTTCATGATGGA+AGG + chr1_4:63248458-63248477 Msa0176710:intron 40.0%
!! CGTGAACTTGTTAAAAGTGC+TGG + chr1_4:63248493-63248512 Msa0176710:CDS 40.0%
!! TGTTAAAAGTGCTGGACTTG+AGG + chr1_4:63248501-63248520 Msa0176710:CDS 40.0%
GCGCATTAGAGAGTTAGAAA+GGG + chr1_4:63248950-63248969 Msa0176710:intron 40.0%
CGCATTAGAGAGTTAGAAAG+GGG + chr1_4:63248951-63248970 Msa0176710:intron 40.0%
! GTGGATTACAGTATCACAGA+GGG - chr1_4:63249082-63249101 None:intergenic 40.0%
! TGTGGATTACAGTATCACAG+AGG - chr1_4:63249083-63249102 None:intergenic 40.0%
TCATTAAAGCGAGTTCGCAT+CGG + chr1_4:63249274-63249293 Msa0176710:CDS 40.0%
AAAATTTACCCAAGGTCTGG+TGG - chr1_4:63249313-63249332 None:intergenic 40.0%
CACAAAATTTACCCAAGGTC+TGG - chr1_4:63249316-63249335 None:intergenic 40.0%
! TCCTTACTCCTTAGTTCTCA+AGG + chr1_4:63249346-63249365 Msa0176710:intron 40.0%
! CCTTACTCCTTAGTTCTCAA+GGG + chr1_4:63249347-63249366 Msa0176710:intron 40.0%
AAAGACTCCCTTGAGAACTA+AGG - chr1_4:63249357-63249376 None:intergenic 40.0%
AGCTATTGGATTCTGATGCA+CGG + chr1_4:63249649-63249668 Msa0176710:three_prime_UTR 40.0%
CATATGATCATGCATGAGGT+TGG + chr1_4:63249829-63249848 Msa0176710:three_prime_UTR 40.0%
! CGAAGAAGAAATGGGTTCAG+CGG + chr1_4:63245095-63245114 Msa0176710:exon 45.0%
GCGGAAGGTAGAAGTAAGTT+TGG - chr1_4:63245166-63245185 None:intergenic 45.0%
GATGTTGAATTTGGAGGAGG+AGG - chr1_4:63245211-63245230 None:intergenic 45.0%
ACAATCCACGGAATCATGAG+AGG - chr1_4:63245315-63245334 None:intergenic 45.0%
! ATGATTCCGTGGATTGTTCG+CGG + chr1_4:63245318-63245337 Msa0176710:CDS 45.0%
! TCTTTGAGAAAACTGGGAGG+AGG - chr1_4:63245375-63245394 None:intergenic 45.0%
GAAATGGCTAGTGCTCAAAC+CGG + chr1_4:63245393-63245412 Msa0176710:CDS 45.0%
!! CTAGCCGCTTTAGAATACTG+CGG - chr1_4:63245504-63245523 None:intergenic 45.0%
AACCTTACTGAGACGAGTAC+CGG - chr1_4:63245559-63245578 None:intergenic 45.0%
AATCAGAATAGCCAGTGTGG+TGG - chr1_4:63245670-63245689 None:intergenic 45.0%
CCAATTGAGCTAAGCTCACT+GGG - chr1_4:63245862-63245881 None:intergenic 45.0%
ACCAATTGAGCTAAGCTCAC+TGG - chr1_4:63245863-63245882 None:intergenic 45.0%
CACCTGATGATCCAAAGTAC+TGG + chr1_4:63246039-63246058 Msa0176710:intron 45.0%
GTCCAGTACTTTGGATCATC+AGG - chr1_4:63246044-63246063 None:intergenic 45.0%
GACTAAAGTGGATCCCTCAA+AGG + chr1_4:63246619-63246638 Msa0176710:intron 45.0%
CACAGGTACATATGCTCATC+TGG + chr1_4:63246812-63246831 Msa0176710:intron 45.0%
CAGGTACATATGCTCATCTG+GGG + chr1_4:63246814-63246833 Msa0176710:intron 45.0%
CATATGCTCATCTGGGGAAA+AGG + chr1_4:63246820-63246839 Msa0176710:CDS 45.0%
!! CTCCTGGATGCTTTTTATCC+TGG - chr1_4:63247071-63247090 None:intergenic 45.0%
CGCCCTACAGTAAATAGTCT+TGG - chr1_4:63247102-63247121 None:intergenic 45.0%
GCCTTGATGTTGCAACTACT+GGG + chr1_4:63247121-63247140 Msa0176710:CDS 45.0%
ACCCAGTAGTTGCAACATCA+AGG - chr1_4:63247125-63247144 None:intergenic 45.0%
ATCCAATGGTTCTTGTTCGC+AGG + chr1_4:63247254-63247273 Msa0176710:intron 45.0%
GCACTTAACAGCCATAAGTG+AGG + chr1_4:63247646-63247665 Msa0176710:CDS 45.0%
GGAAGTAACTCCACACTATC+AGG - chr1_4:63247701-63247720 None:intergenic 45.0%
TCAACTATGCTACCCAACAC+TGG + chr1_4:63247790-63247809 Msa0176710:intron 45.0%
GTGAAAATGGGCATGTCGTA+TGG + chr1_4:63248258-63248277 Msa0176710:intron 45.0%
TTCAGATACGAGGCTGTCAA+TGG - chr1_4:63248321-63248340 None:intergenic 45.0%
GCATATAGGAAGCCCTAAGT+GGG + chr1_4:63248928-63248947 Msa0176710:intron 45.0%
GGCGCATTAGAGAGTTAGAA+AGG + chr1_4:63248949-63248968 Msa0176710:intron 45.0%
GTCACTCATTTATCTTGGGG+AGG - chr1_4:63249206-63249225 None:intergenic 45.0%
TTTAGACTTCCACCAGACCT+TGG + chr1_4:63249301-63249320 Msa0176710:CDS 45.0%
TTAGACTTCCACCAGACCTT+GGG + chr1_4:63249302-63249321 Msa0176710:CDS 45.0%
CCCTTGAGAACTAAGGAGTA+AGG - chr1_4:63249350-63249369 None:intergenic 45.0%
GCTATTGGATTCTGATGCAC+GGG + chr1_4:63249650-63249669 Msa0176710:three_prime_UTR 45.0%
CTATTGGATTCTGATGCACG+GGG + chr1_4:63249651-63249670 Msa0176710:three_prime_UTR 45.0%
!! CAAACGCTCTAGAAAGTCTG+TGG - chr1_4:63249703-63249722 None:intergenic 45.0%
TTTGACATCATGCCACACAG+AGG + chr1_4:63249719-63249738 Msa0176710:three_prime_UTR 45.0%
CATGCATGAGGTTGGGATAT+TGG + chr1_4:63249837-63249856 Msa0176710:three_prime_UTR 45.0%
!!! ATAATATTTCAATTTTTTTT+TGG + chr1_4:63249414-63249433 Msa0176710:intron 5.0%
!! ATCCGTTGGCTTTGCATACC+CGG - chr1_4:63245015-63245034 None:intergenic 50.0%
! AATGGGTTCAGCGGCAACAA+TGG + chr1_4:63245104-63245123 Msa0176710:exon 50.0%
AGGAGGAACAAGTGAAGCGA+GGG - chr1_4:63245194-63245213 None:intergenic 50.0%
!! TTGTCGGGGGTTTGGGTTTT+GGG - chr1_4:63245276-63245295 None:intergenic 50.0%
ACCTTCGTCATCGTCGTTGT+CGG - chr1_4:63245292-63245311 None:intergenic 50.0%
AAGGTCCTCTCATGATTCCG+TGG + chr1_4:63245307-63245326 Msa0176710:CDS 50.0%
!! CGCAGTATTCTAAAGCGGCT+AGG + chr1_4:63245502-63245521 Msa0176710:CDS 50.0%
CGAAATATCACCTCCGGATG+CGG - chr1_4:63245586-63245605 None:intergenic 50.0%
CCCAGTGAGCTTAGCTCAAT+TGG + chr1_4:63245859-63245878 Msa0176710:intron 50.0%
AATGGCAGGGAACAAACCTG+AGG - chr1_4:63246186-63246205 None:intergenic 50.0%
ACTTTGTGAGGCTGCCTCTT+AGG - chr1_4:63246674-63246693 None:intergenic 50.0%
CGCCTTGATGTTGCAACTAC+TGG + chr1_4:63247120-63247139 Msa0176710:CDS 50.0%
CTCCTGCGAACAAGAACCAT+TGG - chr1_4:63247259-63247278 None:intergenic 50.0%
CCACACTATCAGGTACACAG+TGG - chr1_4:63247691-63247710 None:intergenic 50.0%
! CCACTGTGTACCTGATAGTG+TGG + chr1_4:63247688-63247707 Msa0176710:CDS 50.0%
GGAGTTACTTCCACGTATGC+CGG + chr1_4:63247709-63247728 Msa0176710:CDS 50.0%
CTTTGTGTATCCGGCATACG+TGG - chr1_4:63247722-63247741 None:intergenic 50.0%
GGCATATAGGAAGCCCTAAG+TGG + chr1_4:63248927-63248946 Msa0176710:intron 50.0%
CTCTCTAATGCGCCCACTTA+GGG - chr1_4:63248943-63248962 None:intergenic 50.0%
ACTCTCTAATGCGCCCACTT+AGG - chr1_4:63248944-63248963 None:intergenic 50.0%
! TCATTGGATTCGGGGGCTTT+TGG + chr1_4:63249040-63249059 Msa0176710:intron 50.0%
! ATTCGGGGGCTTTTGGCATT+AGG + chr1_4:63249047-63249066 Msa0176710:intron 50.0%
TTAAAGCGAGTTCGCATCGG+TGG + chr1_4:63249277-63249296 Msa0176710:CDS 50.0%
! TGATGCACGGGGCATTACTT+GGG + chr1_4:63249662-63249681 Msa0176710:three_prime_UTR 50.0%
GCATGAGGTTGGGATATTGG+TGG + chr1_4:63249840-63249859 Msa0176710:three_prime_UTR 50.0%
CTCCGGGTATGCAAAGCCAA+CGG + chr1_4:63245010-63245029 Msa0176710:five_prime_UTR 55.0%
AAGTGAAGCGAGGGAGAGTG+CGG - chr1_4:63245185-63245204 None:intergenic 55.0%
GAGGAGGAACAAGTGAAGCG+AGG - chr1_4:63245195-63245214 None:intergenic 55.0%
! GGCTTGGGTTTGGGGTTAGA+GGG - chr1_4:63245243-63245262 None:intergenic 55.0%
!!! TTGGGTTTTGGGCTGAGGAG+CGG - chr1_4:63245265-63245284 None:intergenic 55.0%
!! GTTGTCGGGGGTTTGGGTTT+TGG - chr1_4:63245277-63245296 None:intergenic 55.0%
ATCGTCGTTGTCGGGGGTTT+GGG - chr1_4:63245283-63245302 None:intergenic 55.0%
TTCGTCATCGTCGTTGTCGG+GGG - chr1_4:63245289-63245308 None:intergenic 55.0%
CTTCGTCATCGTCGTTGTCG+GGG - chr1_4:63245290-63245309 None:intergenic 55.0%
CCTTCGTCATCGTCGTTGTC+GGG - chr1_4:63245291-63245310 None:intergenic 55.0%
TCTTCGCCGCGAACAATCCA+CGG - chr1_4:63245327-63245346 None:intergenic 55.0%
TGGATTGTTCGCGGCGAAGA+TGG + chr1_4:63245327-63245346 Msa0176710:CDS 55.0%
! GCCGCCGCAGTATTCTAAAG+CGG + chr1_4:63245497-63245516 Msa0176710:CDS 55.0%
!! GCCGCTTTAGAATACTGCGG+CGG - chr1_4:63245501-63245520 None:intergenic 55.0%
CTCCGGTACTCGTCTCAGTA+AGG + chr1_4:63245554-63245573 Msa0176710:CDS 55.0%
AGTAAGGTTCTCGCCGCATC+CGG + chr1_4:63245570-63245589 Msa0176710:CDS 55.0%
CAGAATAGCCAGTGTGGTGG+CGG - chr1_4:63245667-63245686 None:intergenic 55.0%
ATGGAAGCCGCCTTCCTAAG+AGG + chr1_4:63246657-63246676 Msa0176710:CDS 55.0%
TGTGAGGCTGCCTCTTAGGA+AGG - chr1_4:63246670-63246689 None:intergenic 55.0%
! CTGATGCACGGGGCATTACT+TGG + chr1_4:63249661-63249680 Msa0176710:three_prime_UTR 55.0%
TGATTGCGAGAGCCTCTGTG+TGG - chr1_4:63249734-63249753 None:intergenic 55.0%
! GGGCTTGGGTTTGGGGTTAG+AGG - chr1_4:63245244-63245263 None:intergenic 60.0%
! TGAGGAGCGGGCTTGGGTTT+GGG - chr1_4:63245252-63245271 None:intergenic 60.0%
!!! TGGGTTTTGGGCTGAGGAGC+GGG - chr1_4:63245264-63245283 None:intergenic 60.0%
!!! GGGGTTTGGGTTTTGGGCTG+AGG - chr1_4:63245270-63245289 None:intergenic 60.0%
CATCGTCGTTGTCGGGGGTT+TGG - chr1_4:63245284-63245303 None:intergenic 60.0%
CCCGACAACGACGATGACGA+AGG + chr1_4:63245288-63245307 Msa0176710:CDS 60.0%
CGCTGTCACCGCACGAATCT+TGG - chr1_4:63245478-63245497 None:intergenic 60.0%
GTTTGACTCCGCCACCACAC+TGG + chr1_4:63245656-63245675 Msa0176710:intron 60.0%
GAGGCTGCCTCTTAGGAAGG+CGG - chr1_4:63246667-63246686 None:intergenic 60.0%
!! AGTCTTGGTGGGGGTACTCC+TGG - chr1_4:63247087-63247106 None:intergenic 60.0%
! CGGGGGCTTTTGGCATTAGG+AGG + chr1_4:63249050-63249069 Msa0176710:intron 60.0%
! GAAGCGAGGGAGAGTGCGGA+AGG - chr1_4:63245181-63245200 None:intergenic 65.0%
! GAGGAGCGGGCTTGGGTTTG+GGG - chr1_4:63245251-63245270 None:intergenic 65.0%
! CTGAGGAGCGGGCTTGGGTT+TGG - chr1_4:63245253-63245272 None:intergenic 65.0%
! TTGGGCTGAGGAGCGGGCTT+GGG - chr1_4:63245258-63245277 None:intergenic 65.0%
! TTTGGGCTGAGGAGCGGGCT+TGG - chr1_4:63245259-63245278 None:intergenic 65.0%
AAGGTTCTCGCCGCATCCGG+AGG + chr1_4:63245573-63245592 Msa0176710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 63244965 63250006 63244965 ID=Msa0176710;Name=Msa0176710
chr1_4 mRNA 63244965 63250006 63244965 ID=Msa0176710-mRNA-1;Parent=Msa0176710;Name=Msa0176710-mRNA-1;_AED=0.12;_eAED=0.12;_QI=140|1|1|1|1|1|10|449|408
chr1_4 exon 63244965 63245594 63244965 ID=Msa0176710-mRNA-1:exon:20378;Parent=Msa0176710-mRNA-1
chr1_4 exon 63246109 63246188 63246109 ID=Msa0176710-mRNA-1:exon:20379;Parent=Msa0176710-mRNA-1
chr1_4 exon 63246620 63246720 63246620 ID=Msa0176710-mRNA-1:exon:20380;Parent=Msa0176710-mRNA-1
chr1_4 exon 63246817 63246889 63246817 ID=Msa0176710-mRNA-1:exon:20381;Parent=Msa0176710-mRNA-1
chr1_4 exon 63247072 63247165 63247072 ID=Msa0176710-mRNA-1:exon:20382;Parent=Msa0176710-mRNA-1
chr1_4 exon 63247276 63247324 63247276 ID=Msa0176710-mRNA-1:exon:20383;Parent=Msa0176710-mRNA-1
chr1_4 exon 63247610 63247760 63247610 ID=Msa0176710-mRNA-1:exon:20384;Parent=Msa0176710-mRNA-1
chr1_4 exon 63248466 63248522 63248466 ID=Msa0176710-mRNA-1:exon:20385;Parent=Msa0176710-mRNA-1
chr1_4 exon 63249268 63249323 63249268 ID=Msa0176710-mRNA-1:exon:20386;Parent=Msa0176710-mRNA-1
chr1_4 exon 63249482 63250006 63249482 ID=Msa0176710-mRNA-1:exon:20387;Parent=Msa0176710-mRNA-1
chr1_4 five_prime_UTR 63244965 63245104 63244965 ID=Msa0176710-mRNA-1:five_prime_utr;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63245105 63245594 63245105 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63246109 63246188 63246109 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63246620 63246720 63246620 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63246817 63246889 63246817 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63247072 63247165 63247072 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63247276 63247324 63247276 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63247610 63247760 63247610 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63248466 63248522 63248466 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63249268 63249323 63249268 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 CDS 63249482 63249557 63249482 ID=Msa0176710-mRNA-1:cds;Parent=Msa0176710-mRNA-1
chr1_4 three_prime_UTR 63249558 63250006 63249558 ID=Msa0176710-mRNA-1:three_prime_utr;Parent=Msa0176710-mRNA-1
Gene Sequence

>Msa0176710

ATGGGTTCAGCGGCAACAATGGCAATGACAGCACTCTATTTCACCACCACCAAATCAACCAAACTTACTTCTACCTTCCGCACTCTCCCTCGCTTCACTTGTTCCTCCTCCTCCAAATTCAACATCTCTTTCTCTCCCTCTAACCCCAAACCCAAGCCCGCTCCTCAGCCCAAAACCCAAACCCCCGACAACGACGATGACGAAGGTCCTCTCATGATTCCGTGGATTGTTCGCGGCGAAGATGGCAACTTCAAGCTTCTATCAGAGCCTCCTCCCAGTTTTCTCAAAGAAATGGCTAGTGCTCAAACCGGTACCAAAAAATCAGAGAAGGACCAAATTACCAAAAACAAGAAAAAGAGTGAAAAGGAAACCAAGATTCGTGCGGTGACAGCGCCGCCGCAGTATTCTAAAGCGGCTAGGAGATTCTATAATGAAAATATTAAGGAGGACTCCGGTACTCGTCTCAGTAAGGTTCTCGCCGCATCCGGAGTTGCATCTAGGAGAAGCTGCGAAGAGCTAATTTTTAAAGGCAAGGTTACTGTTAACGGTTCTGTCTGTAATACACCTCAGACTAAAGTGGATCCCTCAAAGGATAATATCTATGTCAATGGAAGCCGCCTTCCTAAGAGGCAGCCTCACAAAGTTTATCTTGCCTTGAACAAACCAAAAGGGTACATATGCTCATCTGGGGAAAAGGAGTCTAAATCTGTTATAAGTCTATTTGATGATTTTTTGAGCAGTTGGGATAAAAAGCATCCAGGAGTACCCCCACCAAGACTATTTACTGTAGGGCGCCTTGATGTTGCAACTACTGGGTTACTTATTGTGACTAATGATGGAGATTTTGCTCAAAAACTTTCACATCCGTCATCTAATTTTTCAAAAGAATACATTGCAACAGTTAATGGTCTAGTTCATAAGAGGCACTTAACAGCCATAAGTGAGGGAACAACAATTGAGGGTGTCCACTGTGTACCTGATAGTGTGGAGTTACTTCCACGTATGCCGGATACACAAAGATCTCGACTTCGTATTGTGGTTCATGATGGAAGGAAGCATGAAGTTCGTGAACTTGTTAAAAGTGCTGGACTTGAGATTCATTCATTAAAGCGAGTTCGCATCGGTGGTTTTAGACTTCCACCAGACCTTGGGCTAGGGAAGTACATTGAGCTAAATCCGACAAATCTAAAAGCATTGGGAGGAAGAGTTAACAAAGCTAATTCTTAA

Protein sequence

>Msa0176710

MGSAATMAMTALYFTTTKSTKLTSTFRTLPRFTCSSSSKFNISFSPSNPKPKPAPQPKTQTPDNDDDEGPLMIPWIVRGEDGNFKLLSEPPPSFLKEMASAQTGTKKSEKDQITKNKKKSEKETKIRAVTAPPQYSKAARRFYNENIKEDSGTRLSKVLAASGVASRRSCEELIFKGKVTVNGSVCNTPQTKVDPSKDNIYVNGSRLPKRQPHKVYLALNKPKGYICSSGEKESKSVISLFDDFLSSWDKKHPGVPPPRLFTVGRLDVATTGLLIVTNDGDFAQKLSHPSSNFSKEYIATVNGLVHKRHLTAISEGTTIEGVHCVPDSVELLPRMPDTQRSRLRIVVHDGRKHEVRELVKSAGLEIHSLKRVRIGGFRLPPDLGLGKYIELNPTNLKALGGRVNKANS*