AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833630 MtrunA17_Chr5g0398861 97.222 252 6 1 1 252 1 251 1.62e-179 493
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833630 AT1G62780.1 62.302 252 80 3 1 252 1 237 6.72e-106 306

Find 72 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTTGATGTCAAGATTT+TGG 0.138015 5_4:-6746950 None:intergenic
TTTCCTTCAACTTAAATAAA+TGG 0.193641 5_4:+6745201 Msa0833630:exon
ATGAGGTCTTGTGGAGTATC+AGG 0.256254 5_4:-6746114 None:intergenic
GTCCTATTGGTCCTGTTGAT+TGG 0.268287 5_4:+6745338 Msa0833630:CDS
TTTGCCTCTGCTCCATGATT+TGG 0.296156 5_4:-6745290 None:intergenic
GGCCGGCCTAGTACACCTTC+TGG 0.301594 5_4:-6745455 None:intergenic
CAAACCTGTTCCTTCTTGTA+TGG 0.344252 5_4:-6746496 None:intergenic
TACTTTATTATCACCATCTC+TGG 0.344989 5_4:+6747535 Msa0833630:three_prime_UTR
TCCTATTGGTCCTGTTGATT+GGG 0.352061 5_4:+6745339 Msa0833630:CDS
AGAAGTTTGAATGCTACTTC+TGG 0.364092 5_4:+6745253 Msa0833630:CDS
TTGGCATTAAAATCCGAGTT+AGG 0.370670 5_4:+6746317 Msa0833630:CDS
TGTATTGGTCCAGGTCCTAT+TGG 0.371658 5_4:+6745325 Msa0833630:CDS
CCTAGCAAGGTGGCCAGTAT+TGG 0.381900 5_4:-6745477 None:intergenic
CTAGCAAGGTGGCCAGTATT+GGG 0.384134 5_4:-6745476 None:intergenic
TAGCCATTTATTTAAGTTGA+AGG 0.385215 5_4:-6745204 None:intergenic
CCAATACTGGCCACCTTGCT+AGG 0.385665 5_4:+6745477 Msa0833630:CDS
GAACCAAATTCTCAATTAAC+AGG 0.392105 5_4:-6747718 None:intergenic
TACGACTATGTATCTTTAGT+TGG 0.395397 5_4:+6747655 Msa0833630:three_prime_UTR
GACGACGTTCTTTCTCTTCA+CGG 0.402885 5_4:-6745562 None:intergenic
GTACTAGGCCGGCCCAATAC+TGG 0.406350 5_4:+6745464 Msa0833630:CDS
GCCGGCCTAGTACACCTTCT+GGG 0.410951 5_4:-6745454 None:intergenic
CTGAGCTTGCATCTTATCAT+AGG 0.423174 5_4:-6746902 None:intergenic
AGTTAAGTTACCCAATCAAC+AGG 0.425418 5_4:-6745349 None:intergenic
TAAATGGCTACGCTTAACTT+TGG 0.446560 5_4:+6745217 Msa0833630:exon
AAATCCACTATTGTGTGTAT+TGG 0.451283 5_4:+6745310 Msa0833630:CDS
TTCAATACAGTTGCTGGAGT+TGG 0.464415 5_4:+6747070 Msa0833630:intron
ACCCAATCAACAGGACCAAT+AGG 0.472506 5_4:-6745340 None:intergenic
GGAGGATAGATTGACGGAGC+TGG 0.478456 5_4:+6746458 Msa0833630:CDS
TTCAATTGATATTACCTGGT+TGG 0.486634 5_4:-6747162 None:intergenic
TCTAACCACCTTGCTTGCTA+TGG 0.486696 5_4:-6745156 None:intergenic
TGGACCAATACACACAATAG+TGG 0.498779 5_4:-6745314 None:intergenic
AATCCGAGTTAGGACAGCTT+CGG 0.500307 5_4:+6746327 Msa0833630:CDS
TTCGAACTAGAACCAAATCA+TGG 0.502050 5_4:+6745278 Msa0833630:CDS
TGTATCTTTAGTTGGAAAGC+TGG 0.504899 5_4:+6747663 Msa0833630:three_prime_UTR
GAAGCAAGCTGCAGAATACA+TGG 0.509642 5_4:+6747449 Msa0833630:intron
CTTACTTGACACTGAAGCTC+AGG 0.510721 5_4:+6746143 Msa0833630:CDS
TAGGACCCAGAAGGTGTACT+AGG 0.511032 5_4:+6745449 Msa0833630:intron
AAGGCCATACAAGAAGGAAC+AGG 0.513579 5_4:+6746492 Msa0833630:CDS
TTCACGGACTTGACGCTCAA+AGG 0.514787 5_4:-6745546 None:intergenic
ACTATTGTGTGTATTGGTCC+AGG 0.514965 5_4:+6745316 Msa0833630:CDS
AAGTGCACATGGTGCCAACC+AGG 0.543322 5_4:+6747148 Msa0833630:CDS
CAAGGTGGCCAGTATTGGGC+CGG 0.546539 5_4:-6745472 None:intergenic
AGCATTCAAACTTCTTGTTG+TGG 0.561221 5_4:-6745245 None:intergenic
ACCCAGAAGGTGTACTAGGC+CGG 0.561282 5_4:+6745453 Msa0833630:CDS
AACCAAAATCTTGACATCAA+AGG 0.566416 5_4:+6746948 Msa0833630:CDS
AAGTATTCAATGAGGTCTTG+TGG 0.566777 5_4:-6746123 None:intergenic
GATAGTAACCATAGCAAGCA+AGG 0.570122 5_4:+6745148 Msa0833630:five_prime_UTR
AAACCGAAGCTGTCCTAACT+CGG 0.570557 5_4:-6746330 None:intergenic
AATACATGGAGAAGCTCCGT+GGG 0.575310 5_4:+6747463 Msa0833630:CDS
AGCTCAGCTCATAAAAGCCA+AGG 0.578424 5_4:+6746918 Msa0833630:CDS
TGAGGTCTTGTGGAGTATCA+GGG 0.585430 5_4:-6746113 None:intergenic
TCTTAAACTCAAGCCTAGCA+AGG 0.605985 5_4:-6745490 None:intergenic
GCTTACGGAGGATAGATTGA+CGG 0.606564 5_4:+6746452 Msa0833630:intron
GTTTGCTGTTAACAAAACAC+AGG 0.607415 5_4:+6746349 Msa0833630:CDS
GGATAGATTGACGGAGCTGG+AGG 0.622249 5_4:+6746461 Msa0833630:CDS
TTAGAGAAGGCCATACAAGA+AGG 0.624872 5_4:+6746486 Msa0833630:CDS
AAGTAAACTTACATCACGAA+GGG 0.626470 5_4:-6745588 None:intergenic
TCAACAGGACCAATAGGACC+TGG 0.627773 5_4:-6745334 None:intergenic
AAAGTAAACTTACATCACGA+AGG 0.630395 5_4:-6745589 None:intergenic
ATGATTTCTGCAGCTTACGG+AGG 0.630425 5_4:+6746440 Msa0833630:intron
ATATTTGATACAATTATCGA+CGG 0.631236 5_4:-6747567 None:intergenic
GGAGCTGGAGGCTTTAGAGA+AGG 0.639468 5_4:+6746473 Msa0833630:CDS
AGAACCAAATCATGGAGCAG+AGG 0.649829 5_4:+6745286 Msa0833630:CDS
GAATACATGGAGAAGCTCCG+TGG 0.672335 5_4:+6747462 Msa0833630:CDS
AGATTGCAAGAATGAGACCA+CGG 0.675769 5_4:+6746178 Msa0833630:CDS
TGTCAAGTAAGTATTCAATG+AGG 0.689411 5_4:-6746131 None:intergenic
TGTATTTGAGAACAGCCCCA+CGG 0.699113 5_4:-6747479 None:intergenic
GAAAACATATCAAGTGCACA+TGG 0.703604 5_4:+6747137 Msa0833630:CDS
TAAACTCAAGCCTAGCAAGG+TGG 0.709876 5_4:-6745487 None:intergenic
TGATTGATGTAGGACCCAGA+AGG 0.731704 5_4:+6745440 Msa0833630:intron
AGTAACCATAGCAAGCAAGG+TGG 0.761290 5_4:+6745151 Msa0833630:five_prime_UTR
ATACATGGAGAAGCTCCGTG+GGG 0.765327 5_4:+6747464 Msa0833630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTTAGAGATTAAAT+TGG + chr5_4:6745955-6745974 Msa0833630:intron 10.0%
!!! TTGATATTTTAATAATTTGA+AGG + chr5_4:6746730-6746749 Msa0833630:intron 10.0%
!!! TTTTTTATAGTTGATATTAT+TGG + chr5_4:6747007-6747026 Msa0833630:intron 10.0%
!! ATCTTAAATTTAATAGCATA+TGG - chr5_4:6745900-6745919 None:intergenic 15.0%
!! TTTCCTTCAACTTAAATAAA+TGG + chr5_4:6745201-6745220 Msa0833630:exon 20.0%
!!! GATTAGAGTAATAATCATTT+TGG - chr5_4:6745838-6745857 None:intergenic 20.0%
!! TTAAATTTAATAGCATATGG+TGG - chr5_4:6745897-6745916 None:intergenic 20.0%
!!! TAGCCTTTATTATTTTATGA+CGG + chr5_4:6746043-6746062 Msa0833630:intron 20.0%
!! ACTAAGCAAATGAAAAATAA+CGG - chr5_4:6746083-6746102 None:intergenic 20.0%
!! CACTAGAATAATTTATTCAA+TGG - chr5_4:6746401-6746420 None:intergenic 20.0%
!! TACAATTTCATGAACTAAAT+TGG - chr5_4:6746551-6746570 None:intergenic 20.0%
!!! AATTTAGTTCATGAAATTGT+AGG + chr5_4:6746550-6746569 Msa0833630:intron 20.0%
!!! ATTTAGTTCATGAAATTGTA+GGG + chr5_4:6746551-6746570 Msa0833630:intron 20.0%
!!! GTGAAATTTTGTTAATTTCA+AGG - chr5_4:6746592-6746611 None:intergenic 20.0%
!!! AACTTTTATGTTTCTAGTTT+CGG - chr5_4:6747316-6747335 None:intergenic 20.0%
!! ATATTTGATACAATTATCGA+CGG - chr5_4:6747570-6747589 None:intergenic 20.0%
!!! TAGCCATTTATTTAAGTTGA+AGG - chr5_4:6745207-6745226 None:intergenic 25.0%
! TCAATCAATAAAGAGTTAGT+TGG - chr5_4:6745406-6745425 None:intergenic 25.0%
! TTTGATTGATTGATTGATGT+AGG + chr5_4:6745430-6745449 Msa0833630:intron 25.0%
!!! GTGTGTTTTGTTAGTAATTT+TGG + chr5_4:6745691-6745710 Msa0833630:intron 25.0%
! TTTGATACTTTCAAAGACTA+TGG + chr5_4:6745787-6745806 Msa0833630:intron 25.0%
!! TTTAAGATTGTAGTTCTGTT+AGG + chr5_4:6745912-6745931 Msa0833630:intron 25.0%
! ATTTAGAGATTAAATTGGAG+AGG + chr5_4:6745960-6745979 Msa0833630:intron 25.0%
! TTTAGAGATTAAATTGGAGA+GGG + chr5_4:6745961-6745980 Msa0833630:intron 25.0%
! GAACCGTCATAAAATAATAA+AGG - chr5_4:6746049-6746068 None:intergenic 25.0%
!! ATTAAACGACGAATTCTTTT+TGG + chr5_4:6746298-6746317 Msa0833630:CDS 25.0%
! GAATAAATTATTCTAGTGTC+TGG + chr5_4:6746403-6746422 Msa0833630:intron 25.0%
! CAGAAATCATCATTGTAAAA+AGG - chr5_4:6746430-6746449 None:intergenic 25.0%
!!! GTTATTTTCAGACTATTTCA+CGG + chr5_4:6746648-6746667 Msa0833630:intron 25.0%
! TTAAAATATCAAAACAGTCC+TGG - chr5_4:6746722-6746741 None:intergenic 25.0%
!!! TTTATTTTCAATACAGTTGC+TGG + chr5_4:6747064-6747083 Msa0833630:intron 25.0%
! ATCATTCAATTGATATTACC+TGG - chr5_4:6747169-6747188 None:intergenic 25.0%
! AATGAGTTAAAGATTATAGC+TGG - chr5_4:6747260-6747279 None:intergenic 25.0%
! CATGTTCAGTAAATTAAATC+TGG - chr5_4:6747347-6747366 None:intergenic 25.0%
!! CAGATTTAATTTACTGAACA+TGG + chr5_4:6747345-6747364 Msa0833630:intron 25.0%
AAATCCACTATTGTGTGTAT+TGG + chr5_4:6745310-6745329 Msa0833630:CDS 30.0%
AAGTAAACTTACATCACGAA+GGG - chr5_4:6745591-6745610 None:intergenic 30.0%
AAAGTAAACTTACATCACGA+AGG - chr5_4:6745592-6745611 None:intergenic 30.0%
! TTTTGGTCTCTAAATATTCG+AGG - chr5_4:6745821-6745840 None:intergenic 30.0%
TGTCAAGTAAGTATTCAATG+AGG - chr5_4:6746134-6746153 None:intergenic 30.0%
CAAAATTTCACAATGATCTC+CGG + chr5_4:6746601-6746620 Msa0833630:intron 30.0%
! TGATTGAGAATTTTCGAATC+CGG - chr5_4:6746623-6746642 None:intergenic 30.0%
! ATCAGTGATTTTCAATATCC+AGG + chr5_4:6746701-6746720 Msa0833630:intron 30.0%
AATTGATCAAATCGCCAATT+TGG - chr5_4:6746788-6746807 None:intergenic 30.0%
AAATTGGCGATTTGATCAAT+TGG + chr5_4:6746787-6746806 Msa0833630:intron 30.0%
!!! TTGATGTCAAGATTTTGGTT+AGG - chr5_4:6746948-6746967 None:intergenic 30.0%
AACCAAAATCTTGACATCAA+AGG + chr5_4:6746948-6746967 Msa0833630:CDS 30.0%
! ATCCTTTGATGTCAAGATTT+TGG - chr5_4:6746953-6746972 None:intergenic 30.0%
! ACTTCTGTTCTAGTTAAACT+AGG + chr5_4:6747036-6747055 Msa0833630:intron 30.0%
! TGATATGTTTTCATCGAGAA+GGG - chr5_4:6747129-6747148 None:intergenic 30.0%
! TTGATATGTTTTCATCGAGA+AGG - chr5_4:6747130-6747149 None:intergenic 30.0%
TTCAATTGATATTACCTGGT+TGG - chr5_4:6747165-6747184 None:intergenic 30.0%
!!! GGAATTGTCAATTTTGAAAC+AGG + chr5_4:6747218-6747237 Msa0833630:intron 30.0%
TTTGAACATAACAGAACTTG+TGG + chr5_4:6747374-6747393 Msa0833630:intron 30.0%
TACTTTATTATCACCATCTC+TGG + chr5_4:6747535-6747554 Msa0833630:three_prime_UTR 30.0%
TACGACTATGTATCTTTAGT+TGG + chr5_4:6747655-6747674 Msa0833630:three_prime_UTR 30.0%
TAAATGGCTACGCTTAACTT+TGG + chr5_4:6745217-6745236 Msa0833630:exon 35.0%
AGCATTCAAACTTCTTGTTG+TGG - chr5_4:6745248-6745267 None:intergenic 35.0%
! AGAAGTTTGAATGCTACTTC+TGG + chr5_4:6745253-6745272 Msa0833630:CDS 35.0%
TTCGAACTAGAACCAAATCA+TGG + chr5_4:6745278-6745297 Msa0833630:CDS 35.0%
AGTTAAGTTACCCAATCAAC+AGG - chr5_4:6745352-6745371 None:intergenic 35.0%
AAGTATTCAATGAGGTCTTG+TGG - chr5_4:6746126-6746145 None:intergenic 35.0%
TTGGCATTAAAATCCGAGTT+AGG + chr5_4:6746317-6746336 Msa0833630:CDS 35.0%
!! GTTTGCTGTTAACAAAACAC+AGG + chr5_4:6746349-6746368 Msa0833630:CDS 35.0%
! AGGTATCTGACTCTTTTTGT+TGG + chr5_4:6746369-6746388 Msa0833630:intron 35.0%
ATGATGATTTCTGCAGCTTA+CGG + chr5_4:6746437-6746456 Msa0833630:intron 35.0%
AAGGAACAGGTTTGTGAAAA+TGG + chr5_4:6746505-6746524 Msa0833630:intron 35.0%
AATTGGCGATTCACTCTATT+CGG - chr5_4:6746534-6746553 None:intergenic 35.0%
ATTTGGTCCTTGAAATGGTA+TGG - chr5_4:6746771-6746790 None:intergenic 35.0%
TACCATTTCAAGGACCAAAT+TGG + chr5_4:6746771-6746790 Msa0833630:intron 35.0%
!!! GATTTTGGTTAGGTTTTCCT+TGG - chr5_4:6746938-6746957 None:intergenic 35.0%
GAAAACATATCAAGTGCACA+TGG + chr5_4:6747137-6747156 Msa0833630:CDS 35.0%
AGATTATAGCTGGATGATAC+TGG - chr5_4:6747250-6747269 None:intergenic 35.0%
TGTATCTTTAGTTGGAAAGC+TGG + chr5_4:6747663-6747682 Msa0833630:three_prime_UTR 35.0%
GATAGTAACCATAGCAAGCA+AGG + chr5_4:6745148-6745167 Msa0833630:five_prime_UTR 40.0%
TGGACCAATACACACAATAG+TGG - chr5_4:6745317-6745336 None:intergenic 40.0%
! ACTATTGTGTGTATTGGTCC+AGG + chr5_4:6745316-6745335 Msa0833630:CDS 40.0%
! TCCTATTGGTCCTGTTGATT+GGG + chr5_4:6745339-6745358 Msa0833630:CDS 40.0%
TCTTAAACTCAAGCCTAGCA+AGG - chr5_4:6745493-6745512 None:intergenic 40.0%
AGATTGCAAGAATGAGACCA+CGG + chr5_4:6746178-6746197 Msa0833630:CDS 40.0%
!! TTGAAAAGTACTACGAACCG+TGG - chr5_4:6746198-6746217 None:intergenic 40.0%
TTAGAGAAGGCCATACAAGA+AGG + chr5_4:6746486-6746505 Msa0833630:CDS 40.0%
CAAACCTGTTCCTTCTTGTA+TGG - chr5_4:6746499-6746518 None:intergenic 40.0%
TTCATGAAATTGTAGGGTGC+TGG + chr5_4:6746557-6746576 Msa0833630:intron 40.0%
ATGCAAACTTACTCCTTGCT+CGG + chr5_4:6746854-6746873 Msa0833630:intron 40.0%
AGGCATCTGCATAAGCAAAT+GGG - chr5_4:6746885-6746904 None:intergenic 40.0%
TAGGCATCTGCATAAGCAAA+TGG - chr5_4:6746886-6746905 None:intergenic 40.0%
CTGAGCTTGCATCTTATCAT+AGG - chr5_4:6746905-6746924 None:intergenic 40.0%
TTCAATACAGTTGCTGGAGT+TGG + chr5_4:6747070-6747089 Msa0833630:intron 40.0%
TGATTACCAGAATCTGTGTG+TGG + chr5_4:6747197-6747216 Msa0833630:intron 40.0%
ACAATTCCACACACAGATTC+TGG - chr5_4:6747206-6747225 None:intergenic 40.0%
!! AACATGCTGTGCTCTAAGAA+GGG - chr5_4:6747284-6747303 None:intergenic 40.0%
!! AAACATGCTGTGCTCTAAGA+AGG - chr5_4:6747285-6747304 None:intergenic 40.0%
AGTAACCATAGCAAGCAAGG+TGG + chr5_4:6745151-6745170 Msa0833630:five_prime_UTR 45.0%
! TCTAACCACCTTGCTTGCTA+TGG - chr5_4:6745159-6745178 None:intergenic 45.0%
AGAACCAAATCATGGAGCAG+AGG + chr5_4:6745286-6745305 Msa0833630:CDS 45.0%
TTTGCCTCTGCTCCATGATT+TGG - chr5_4:6745293-6745312 None:intergenic 45.0%
! TGTATTGGTCCAGGTCCTAT+TGG + chr5_4:6745325-6745344 Msa0833630:CDS 45.0%
GTCCTATTGGTCCTGTTGAT+TGG + chr5_4:6745338-6745357 Msa0833630:CDS 45.0%
ACCCAATCAACAGGACCAAT+AGG - chr5_4:6745343-6745362 None:intergenic 45.0%
TGATTGATGTAGGACCCAGA+AGG + chr5_4:6745440-6745459 Msa0833630:intron 45.0%
TAAACTCAAGCCTAGCAAGG+TGG - chr5_4:6745490-6745509 None:intergenic 45.0%
GACGACGTTCTTTCTCTTCA+CGG - chr5_4:6745565-6745584 None:intergenic 45.0%
! TGAGGTCTTGTGGAGTATCA+GGG - chr5_4:6746116-6746135 None:intergenic 45.0%
! ATGAGGTCTTGTGGAGTATC+AGG - chr5_4:6746117-6746136 None:intergenic 45.0%
CTTACTTGACACTGAAGCTC+AGG + chr5_4:6746143-6746162 Msa0833630:CDS 45.0%
AATCCGAGTTAGGACAGCTT+CGG + chr5_4:6746327-6746346 Msa0833630:CDS 45.0%
AAACCGAAGCTGTCCTAACT+CGG - chr5_4:6746333-6746352 None:intergenic 45.0%
ATGATTTCTGCAGCTTACGG+AGG + chr5_4:6746440-6746459 Msa0833630:intron 45.0%
GCTTACGGAGGATAGATTGA+CGG + chr5_4:6746452-6746471 Msa0833630:intron 45.0%
AAGGCCATACAAGAAGGAAC+AGG + chr5_4:6746492-6746511 Msa0833630:CDS 45.0%
GTCGACACCATACCATTTCA+AGG + chr5_4:6746761-6746780 Msa0833630:intron 45.0%
CGCCAATTTGGTCCTTGAAA+TGG - chr5_4:6746776-6746795 None:intergenic 45.0%
AGCTCAGCTCATAAAAGCCA+AGG + chr5_4:6746918-6746937 Msa0833630:CDS 45.0%
GAAGCAAGCTGCAGAATACA+TGG + chr5_4:6747449-6747468 Msa0833630:intron 45.0%
AATACATGGAGAAGCTCCGT+GGG + chr5_4:6747463-6747482 Msa0833630:CDS 45.0%
TGTATTTGAGAACAGCCCCA+CGG - chr5_4:6747482-6747501 None:intergenic 45.0%
! ACGGCACAATTTTCCAGAGA+TGG - chr5_4:6747551-6747570 None:intergenic 45.0%
TCAACAGGACCAATAGGACC+TGG - chr5_4:6745337-6745356 None:intergenic 50.0%
! TAGGACCCAGAAGGTGTACT+AGG + chr5_4:6745449-6745468 Msa0833630:intron 50.0%
CTAGCAAGGTGGCCAGTATT+GGG - chr5_4:6745479-6745498 None:intergenic 50.0%
TTCACGGACTTGACGCTCAA+AGG - chr5_4:6745549-6745568 None:intergenic 50.0%
! TTGGAGAGGGCGTGAAACTT+TGG + chr5_4:6745974-6745993 Msa0833630:intron 50.0%
! TGCAGCTTGCTTCTGCAACA+AGG - chr5_4:6747442-6747461 None:intergenic 50.0%
GAATACATGGAGAAGCTCCG+TGG + chr5_4:6747462-6747481 Msa0833630:CDS 50.0%
ATACATGGAGAAGCTCCGTG+GGG + chr5_4:6747464-6747483 Msa0833630:CDS 50.0%
! ACCCAGAAGGTGTACTAGGC+CGG + chr5_4:6745453-6745472 Msa0833630:CDS 55.0%
CCTAGCAAGGTGGCCAGTAT+TGG - chr5_4:6745480-6745499 None:intergenic 55.0%
CCAATACTGGCCACCTTGCT+AGG + chr5_4:6745477-6745496 Msa0833630:CDS 55.0%
GGAGGATAGATTGACGGAGC+TGG + chr5_4:6746458-6746477 Msa0833630:CDS 55.0%
GGATAGATTGACGGAGCTGG+AGG + chr5_4:6746461-6746480 Msa0833630:CDS 55.0%
!! GGAGCTGGAGGCTTTAGAGA+AGG + chr5_4:6746473-6746492 Msa0833630:CDS 55.0%
CAAATGGGAGCAACCGAGCA+AGG - chr5_4:6746870-6746889 None:intergenic 55.0%
! AAGTGCACATGGTGCCAACC+AGG + chr5_4:6747148-6747167 Msa0833630:CDS 55.0%
GCCGGCCTAGTACACCTTCT+GGG - chr5_4:6745457-6745476 None:intergenic 60.0%
GTACTAGGCCGGCCCAATAC+TGG + chr5_4:6745464-6745483 Msa0833630:CDS 60.0%
! CAAGGTGGCCAGTATTGGGC+CGG - chr5_4:6745475-6745494 None:intergenic 60.0%
GGCCGGCCTAGTACACCTTC+TGG - chr5_4:6745458-6745477 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6745140 6747732 6745140 ID=Msa0833630;Name=Msa0833630
chr5_4 mRNA 6745140 6747732 6745140 ID=Msa0833630-mRNA-1;Parent=Msa0833630;Name=Msa0833630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80|1|1|1|1|1|8|220|252
chr5_4 exon 6745140 6745360 6745140 ID=Msa0833630-mRNA-1:exon:2941;Parent=Msa0833630-mRNA-1
chr5_4 exon 6745452 6745598 6745452 ID=Msa0833630-mRNA-1:exon:2942;Parent=Msa0833630-mRNA-1
chr5_4 exon 6746102 6746199 6746102 ID=Msa0833630-mRNA-1:exon:2943;Parent=Msa0833630-mRNA-1
chr5_4 exon 6746298 6746370 6746298 ID=Msa0833630-mRNA-1:exon:2944;Parent=Msa0833630-mRNA-1
chr5_4 exon 6746453 6746513 6746453 ID=Msa0833630-mRNA-1:exon:2945;Parent=Msa0833630-mRNA-1
chr5_4 exon 6746899 6746984 6746899 ID=Msa0833630-mRNA-1:exon:2946;Parent=Msa0833630-mRNA-1
chr5_4 exon 6747080 6747169 6747080 ID=Msa0833630-mRNA-1:exon:2947;Parent=Msa0833630-mRNA-1
chr5_4 exon 6747450 6747732 6747450 ID=Msa0833630-mRNA-1:exon:2948;Parent=Msa0833630-mRNA-1
chr5_4 five_prime_UTR 6745140 6745219 6745140 ID=Msa0833630-mRNA-1:five_prime_utr;Parent=Msa0833630-mRNA-1
chr5_4 CDS 6745220 6745360 6745220 ID=Msa0833630-mRNA-1:cds;Parent=Msa0833630-mRNA-1
chr5_4 CDS 6745452 6745598 6745452 ID=Msa0833630-mRNA-1:cds;Parent=Msa0833630-mRNA-1
chr5_4 CDS 6746102 6746199 6746102 ID=Msa0833630-mRNA-1:cds;Parent=Msa0833630-mRNA-1
chr5_4 CDS 6746298 6746370 6746298 ID=Msa0833630-mRNA-1:cds;Parent=Msa0833630-mRNA-1
chr5_4 CDS 6746453 6746513 6746453 ID=Msa0833630-mRNA-1:cds;Parent=Msa0833630-mRNA-1
chr5_4 CDS 6746899 6746984 6746899 ID=Msa0833630-mRNA-1:cds;Parent=Msa0833630-mRNA-1
chr5_4 CDS 6747080 6747169 6747080 ID=Msa0833630-mRNA-1:cds;Parent=Msa0833630-mRNA-1
chr5_4 CDS 6747450 6747512 6747450 ID=Msa0833630-mRNA-1:cds;Parent=Msa0833630-mRNA-1
chr5_4 three_prime_UTR 6747513 6747732 6747513 ID=Msa0833630-mRNA-1:three_prime_utr;Parent=Msa0833630-mRNA-1
Gene Sequence

>Msa0833630

ATGGCTACGCTTAACTTTGGCATAGCCACAACAAGAAGTTTGAATGCTACTTCTGGTTTTCGAACTAGAACCAAATCATGGAGCAGAGGCAAATCCACTATTGTGTGTATTGGTCCAGGTCCTATTGGTCCTGTTGATTGGGACCCAGAAGGTGTACTAGGCCGGCCCAATACTGGCCACCTTGCTAGGCTTGAGTTTAAGAGACGTCTTGAGAAAGATTCTGAAGCTCGAGAAGCCTTTGAGCGTCAAGTCCGTGAAGAGAAAGAACGTCGTCGAGCCCTTCGTGATTCTCGTGATGTCCCTGATACTCCACAAGACCTCATTGAATACTTACTTGACACTGAAGCTCAGGAGATTGAATTTGAGATTGCAAGAATGAGACCACGATTAAACGACGAATTCTTTTTGGCATTAAAATCCGAGTTAGGACAGCTTCGGTTTGCTGTTAACAAAACACAGCTTACGGAGGATAGATTGACGGAGCTGGAGGCTTTAGAGAAGGCCATACAAGAAGGAACAGATGCCTATGATAAGATGCAAGCTCAGCTCATAAAAGCCAAGGAAAACCTAACCAAAATCTTGACATCAAAGGATGTCAAAGCAACTTTGCTGGAGTTGGTTGAGCGCAACGAGATTAATCGATCATTGTTGACCCTTCTCGATGAAAACATATCAAGTGCACATGGTGCCAACCAGAAGCAAGCTGCAGAATACATGGAGAAGCTCCGTGGGGCTGTTCTCAAATACATTACAGTTTAG

Protein sequence

>Msa0833630

MATLNFGIATTRSLNATSGFRTRTKSWSRGKSTIVCIGPGPIGPVDWDPEGVLGRPNTGHLARLEFKRRLEKDSEAREAFERQVREEKERRRALRDSRDVPDTPQDLIEYLLDTEAQEIEFEIARMRPRLNDEFFLALKSELGQLRFAVNKTQLTEDRLTELEALEKAIQEGTDAYDKMQAQLIKAKENLTKILTSKDVKATLLELVERNEINRSLLTLLDENISSAHGANQKQAAEYMEKLRGAVLKYITV*