AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166960 MtrunA17_Chr7g0264491 89.863 582 21 8 1 569 1 557 0.0 1009
Msa1166960 MtrunA17_Chr1g0180881 54.878 574 224 7 4 569 15 561 0.0 605
Msa1166960 MtrunA17_Chr3g0145921 35.891 404 234 5 165 564 187 569 3.43e-69 233
Msa1166960 MtrunA17_Chr3g0090001 37.402 254 143 1 312 565 165 402 6.85e-48 172
Msa1166960 MtrunA17_Chr1g0146481 28.882 322 206 3 247 567 250 549 1.46e-40 154
Msa1166960 MtrunA17_Chr4g0021031 31.847 314 198 6 252 563 200 499 9.02e-35 137
Msa1166960 MtrunA17_Chr3g0126401 29.430 316 202 4 253 565 216 513 1.15e-27 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166960 AT2G36990.1 49.821 558 233 8 19 569 30 547 6.48e-174 503
Msa1166960 AT1G08540.1 37.037 378 217 2 188 565 212 568 7.61e-76 251
Msa1166960 AT5G13730.1 33.333 312 189 2 253 564 122 414 4.21e-43 159
Msa1166960 AT3G53920.1 28.479 309 204 3 259 566 278 570 1.42e-38 149
Msa1166960 AT1G64860.1 29.560 318 208 5 250 565 196 499 1.64e-31 128
Msa1166960 AT5G24120.1 28.530 347 227 6 222 565 188 516 2.50e-30 125
Msa1166960 AT5G24120.3 28.530 347 227 6 222 565 188 516 2.50e-30 125
Msa1166960 AT5G24120.2 28.530 347 227 6 222 565 188 516 2.50e-30 125
Msa1166960 AT1G64860.2 28.369 282 187 4 241 520 187 455 9.75e-26 111
Msa1166960 AT3G53920.2 26.866 134 98 0 258 391 277 410 2.15e-17 85.1

Find 132 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAAAGTTGCTTTGTTTC+AGG 0.090588 7_4:+59120432 None:intergenic
GGGTGATTTGTCTTCTTTAC+AGG 0.153277 7_4:+59121267 None:intergenic
CTGTTCCTGCAGCTTCTTCT+TGG 0.172620 7_4:-59121372 Msa1166960:CDS
ATCAAACTTCAGTCTCATTT+TGG 0.184227 7_4:-59120258 Msa1166960:CDS
GAGAAATCTTTGTCAGAAAT+TGG 0.213726 7_4:-59117296 Msa1166960:CDS
CTGAGTACCTTCCTTTCTTT+TGG 0.217852 7_4:+59117347 None:intergenic
TCGCTTTGCTATTTCTTCTT+TGG 0.231759 7_4:+59119150 None:intergenic
AGAATTCTTCCTTCCCCTTC+AGG 0.247343 7_4:-59121570 Msa1166960:intron
ATGCTCTGCGCTTGTTCTTA+TGG 0.275437 7_4:-59120458 Msa1166960:CDS
TCAATTGATTGCTCAAATTC+AGG 0.275870 7_4:-59120394 Msa1166960:intron
GGTTCAGTACTTACGCTTAC+TGG 0.283353 7_4:-59119782 Msa1166960:CDS
TACATAGTTGTATCTAATTA+AGG 0.293695 7_4:-59121643 Msa1166960:five_prime_UTR
GGAGAATTTCTATGCCCTTT+TGG 0.304880 7_4:-59119227 Msa1166960:CDS
TTTGTACTTTCCGAAGAATA+AGG 0.337871 7_4:+59121679 None:intergenic
CTGCCTTCAGGACTTATTGC+AGG 0.346270 7_4:-59120076 Msa1166960:intron
AATATCATAGGAGGGAAGTA+TGG 0.346762 7_4:-59119850 Msa1166960:intron
GGGGCGTGGTCTCTGCCTTC+AGG 0.350007 7_4:-59120088 Msa1166960:CDS
TACCGGCAGACGAATTGTTT+TGG 0.351152 7_4:+59119719 None:intergenic
GTTAATATGCACCCTCTTGA+TGG 0.351862 7_4:-59118268 Msa1166960:intron
ACATTAAACACGAGGGTAAC+AGG 0.352590 7_4:-59121143 Msa1166960:CDS
CTGATTACCTCCTTATTCTT+CGG 0.368940 7_4:-59121689 Msa1166960:five_prime_UTR
GGGGAAGGAAGAATTCTAGA+AGG 0.369676 7_4:+59121576 None:intergenic
ACTGAACCGGCAACCAGCTT+GGG 0.373184 7_4:+59119797 None:intergenic
GGTGGATAAGGCAAACAATA+AGG 0.378088 7_4:-59119761 Msa1166960:CDS
CTTCCGCAATCTTGCCCAAA+AGG 0.380574 7_4:+59119212 None:intergenic
TCAAACCCCAAGCTGGTTGC+CGG 0.391074 7_4:-59119803 Msa1166960:CDS
GGAACCAACTTTGGCTGAAT+GGG 0.405490 7_4:-59120232 Msa1166960:CDS
TCAAGAGGGTGCATATTAAC+AGG 0.410318 7_4:+59118271 None:intergenic
CTTTGCTATTTCTTCTTTGG+TGG 0.415934 7_4:+59119153 None:intergenic
AGTGGCTGAAGAGTTGAAAT+TGG 0.417620 7_4:-59120801 Msa1166960:CDS
GCCTGCTGATGGTTTCCAAT+GGG 0.420481 7_4:-59120876 Msa1166960:CDS
AGGAATTACAGTAGATAGGT+TGG 0.431039 7_4:-59119125 Msa1166960:CDS
GGCTGAATGGGCAGATGGTG+TGG 0.432577 7_4:-59120220 Msa1166960:CDS
TACTGAACCGGCAACCAGCT+TGG 0.433442 7_4:+59119796 None:intergenic
CAAGGTGTTGGGTGTGTGTA+AGG 0.434469 7_4:-59117273 Msa1166960:CDS
GGGAACCAACTTTGGCTGAA+TGG 0.437966 7_4:-59120233 Msa1166960:CDS
GATGATGATTCACTACCTCT+TGG 0.440294 7_4:-59120758 Msa1166960:CDS
GTATGCAGCAGTTGCATCTT+CGG 0.440704 7_4:-59121061 Msa1166960:CDS
AAGAGCATCGCGATGAGTAT+AGG 0.444608 7_4:-59121303 Msa1166960:CDS
CTAAGATTTGGTATTGAAGA+TGG 0.445284 7_4:-59117323 Msa1166960:CDS
TAAGGAGAGGGTCAGACAAT+TGG 0.454557 7_4:-59117255 Msa1166960:CDS
AAGGTACTCAGGCTAAGATT+TGG 0.454745 7_4:-59117335 Msa1166960:CDS
GAAGAAACGAAATCCTCTTC+CGG 0.460270 7_4:+59120917 None:intergenic
GCTTGAGCTTGTTCAACGCT+TGG 0.460500 7_4:+59117228 None:intergenic
TTTGCTATTTCTTCTTTGGT+GGG 0.461967 7_4:+59119154 None:intergenic
TTTCGATGGAGCGAGCTGTA+TGG 0.462748 7_4:-59119072 Msa1166960:CDS
AGACTCGGACACAACTTTCC+AGG 0.467003 7_4:-59119047 Msa1166960:intron
ATTGGCTTCTTCGCCGGAAG+AGG 0.467488 7_4:-59120930 Msa1166960:CDS
TCAGAAATTGGCAAGGTGTT+GGG 0.477054 7_4:-59117284 Msa1166960:CDS
TCAACTATGCTGCCTGCTGA+TGG 0.478314 7_4:-59120887 Msa1166960:CDS
ATGATGATTCACTACCTCTT+GGG 0.478340 7_4:-59120757 Msa1166960:intron
TTTATATAATTGCTCAACCT+TGG 0.481097 7_4:+59117138 None:intergenic
TTCCAAAACAATTCGTCTGC+CGG 0.487773 7_4:-59119721 Msa1166960:intron
GTCAGAAATTGGCAAGGTGT+TGG 0.493182 7_4:-59117285 Msa1166960:CDS
TTCGATGGAGCGAGCTGTAT+GGG 0.496745 7_4:-59119071 Msa1166960:CDS
CTTCAGATTGGCTTCTTCGC+CGG 0.497531 7_4:-59120936 Msa1166960:intron
AGACTGGCCGACTCTTCACT+TGG 0.501392 7_4:-59120648 Msa1166960:CDS
GCTGAATGGGCAGATGGTGT+GGG 0.502616 7_4:-59120219 Msa1166960:CDS
AGTAAGCGTAAGTACTGAAC+CGG 0.503207 7_4:+59119784 None:intergenic
TTCCGCAATCTTGCCCAAAA+GGG 0.503563 7_4:+59119213 None:intergenic
GAGTAGGAATTACAGTAGAT+AGG 0.505400 7_4:-59119129 Msa1166960:CDS
CTTACGCTTACTGGTGGATA+AGG 0.505548 7_4:-59119773 Msa1166960:CDS
TACAAGAACTCCGCTTTCGA+TGG 0.512841 7_4:-59119086 Msa1166960:CDS
CTCAAAACAAGCTGCTGCAG+TGG 0.518614 7_4:-59120819 Msa1166960:CDS
TGCCTGCTGATGGTTTCCAA+TGG 0.519704 7_4:-59120877 Msa1166960:CDS
ACAAAATCGTGAGGTCAATA+CGG 0.521532 7_4:-59120620 Msa1166960:CDS
TCTGCCCATTCAGCCAAAGT+TGG 0.529812 7_4:+59120228 None:intergenic
AGGGAAGTATGGGCCTTATG+AGG 0.530509 7_4:-59119839 Msa1166960:CDS
GCGAGCTGTATGGGCAGACT+CGG 0.531907 7_4:-59119062 Msa1166960:CDS
AAGTTGAAAGAAGGACTTGA+CGG 0.532097 7_4:-59120486 Msa1166960:CDS
TCACATTGCTAAATATTACC+AGG 0.536733 7_4:-59120109 Msa1166960:CDS
TCCCATTGGAAACCATCAGC+AGG 0.540739 7_4:+59120875 None:intergenic
GAAGGCAGAGACCACGCCCC+TGG 0.545314 7_4:+59120091 None:intergenic
ATTTGTGAGAAAATCAATAC+CGG 0.546496 7_4:-59121110 Msa1166960:CDS
CAAGAGTAAGTGCATCCCAT+TGG 0.548221 7_4:+59120861 None:intergenic
GGTCAATACGGCTTAAAGAA+AGG 0.550085 7_4:-59120608 Msa1166960:CDS
GGGAAGGAAGAATTCTAGAA+GGG 0.551200 7_4:+59121577 None:intergenic
CAAAAGAAAGGAAGGTACTC+AGG 0.556105 7_4:-59117346 Msa1166960:CDS
GTAGGCCAAGAAGAAGCTGC+AGG 0.556382 7_4:+59121367 None:intergenic
GTTCTTTCCAAGTGAAGAGT+CGG 0.560295 7_4:+59120641 None:intergenic
TGAGGTTGAGCGTTGAAGTG+TGG 0.561105 7_4:-59121764 Msa1166960:five_prime_UTR
ATATCATAGGAGGGAAGTAT+GGG 0.564621 7_4:-59119849 Msa1166960:intron
TTTGCCTCCAAAAGAAAGGA+AGG 0.566764 7_4:-59117354 Msa1166960:CDS
GATTCATGCCAACTTACGCC+TGG 0.569755 7_4:-59120136 Msa1166960:CDS
CACAATGAAGTCGTTTCTGA+AGG 0.570570 7_4:+59120181 None:intergenic
GAAAAGTTCAAACCCCAAGC+TGG 0.571259 7_4:-59119810 Msa1166960:CDS
GCAGGAACAGCTTGGTCATG+AGG 0.572256 7_4:+59121385 None:intergenic
GCTAAATATTACCAGGGGCG+TGG 0.578026 7_4:-59120102 Msa1166960:CDS
GAAGAAATAGCAAAGCGAGT+AGG 0.578606 7_4:-59119145 Msa1166960:CDS
AAGAAGCTGCAGGAACAGCT+TGG 0.580401 7_4:+59121377 None:intergenic
AGCCATGTACGCAACCTCCT+AGG 0.580915 7_4:-59117380 Msa1166960:CDS
AAAAGTCCGATGTACAAAGA+AGG 0.581605 7_4:-59120524 Msa1166960:CDS
TTGCTATTTCTTCTTTGGTG+GGG 0.584906 7_4:+59119155 None:intergenic
GTTGGGTGTGTGTAAGGAGA+GGG 0.590883 7_4:-59117267 Msa1166960:CDS
CACATTGCTAAATATTACCA+GGG 0.594851 7_4:-59120108 Msa1166960:CDS
TAGGAATACGGGTACCTGAA+GGG 0.595294 7_4:+59121556 None:intergenic
CATCAAGTTGTTGACTAACA+AGG 0.596849 7_4:+59117201 None:intergenic
AGGAATACGGGTACCTGAAG+GGG 0.597970 7_4:+59121557 None:intergenic
TCTTGTAAAAGAACAGAGGT+AGG 0.599319 7_4:+59121322 None:intergenic
TCTTTACAGGTATGAAGTAG+CGG 0.600256 7_4:+59121280 None:intergenic
ATCTTTGTCAGAAATTGGCA+AGG 0.600345 7_4:-59117291 Msa1166960:CDS
GGAAGAATTCTAGAAGGGAA+TGG 0.601143 7_4:+59121582 None:intergenic
ACGTAACCTTCTTTGTACAT+CGG 0.606013 7_4:+59120518 None:intergenic
TCTGAAGGTCACGACAGCTA+AGG 0.610151 7_4:+59120196 None:intergenic
AGAATAAGGAGGTAATCAGA+TGG 0.610837 7_4:+59121693 None:intergenic
GTACTTTCCGAAGAATAAGG+AGG 0.613495 7_4:+59121682 None:intergenic
GTGTTGCAAAACAACTAATG+AGG 0.615119 7_4:-59117403 Msa1166960:CDS
CTAGAAGGGAATGGTGTAGA+CGG 0.615333 7_4:+59121591 None:intergenic
CGTCAACTCATCAACATCGC+CGG 0.618555 7_4:+59121091 None:intergenic
CTGAACCGGCAACCAGCTTG+GGG 0.623406 7_4:+59119798 None:intergenic
ATACCTGCAATAAGTCCTGA+AGG 0.625468 7_4:+59120073 None:intergenic
ATACGGGTACCTGAAGGGGA+AGG 0.626180 7_4:+59121561 None:intergenic
ACAGCTCGCTCCATCGAAAG+CGG 0.630654 7_4:+59119076 None:intergenic
ATTTAGCAATGTGAACTACC+AGG 0.636377 7_4:+59120118 None:intergenic
CTTCAGAAACGACTTCATTG+TGG 0.636469 7_4:-59120180 Msa1166960:CDS
TAAAGAAGACAAATCACCCC+AGG 0.636708 7_4:-59121263 Msa1166960:intron
TCAGTACTTACGCTTACTGG+TGG 0.637515 7_4:-59119779 Msa1166960:CDS
TGTTGGGTGTGTGTAAGGAG+AGG 0.638170 7_4:-59117268 Msa1166960:CDS
TTGGAGGCAAAATACCTAGG+AGG 0.638755 7_4:+59117366 None:intergenic
GGATAAGGCAAACAATAAGG+AGG 0.639166 7_4:-59119758 Msa1166960:CDS
AAAACAGGCATACCATCAAG+AGG 0.639471 7_4:+59118256 None:intergenic
ACTTTGGCTGAATGGGCAGA+TGG 0.654006 7_4:-59120225 Msa1166960:CDS
GATAAGGCAAACAATAAGGA+GGG 0.667443 7_4:-59119757 Msa1166960:CDS
TAAGCTAGAACTAACCCAAG+AGG 0.669306 7_4:+59120743 None:intergenic
AAACAGGCATACCATCAAGA+GGG 0.683053 7_4:+59118257 None:intergenic
TGAAGGCAACATTAAACACG+AGG 0.685715 7_4:-59121151 Msa1166960:intron
GAAGGGAATGGTGTAGACGG+AGG 0.686200 7_4:+59121594 None:intergenic
TTGGAAAGAACAAAATCGTG+AGG 0.689756 7_4:-59120629 Msa1166960:CDS
ACATTGCTAAATATTACCAG+GGG 0.701498 7_4:-59120107 Msa1166960:CDS
ATGCTCTTGTAAAAGAACAG+AGG 0.718644 7_4:+59121318 None:intergenic
TTGATCAATAGCATACACCA+AGG 0.737692 7_4:-59117155 Msa1166960:three_prime_UTR
GAAGGCAACATTAAACACGA+GGG 0.746893 7_4:-59121150 Msa1166960:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTAAAAAA+AGG + chr7_4:59117034-59117053 None:intergenic 0.0%
!! ATACAATGTATATATATATA+TGG + chr7_4:59120302-59120321 None:intergenic 10.0%
!! TATATATATATACATTGTAT+AGG - chr7_4:59120302-59120321 Msa1166960:intron 10.0%
!! TACATGTATTAAATAAAATA+AGG + chr7_4:59121078-59121097 None:intergenic 10.0%
!!! TAGATTTTTTTTTTTTTTTG+AGG - chr7_4:59121674-59121693 Msa1166960:five_prime_UTR 10.0%
!!! AGATTTTTTTTTTTTTTTGA+GGG - chr7_4:59121675-59121694 Msa1166960:five_prime_UTR 10.0%
!!! TTATTGATAACAAAAGAAAT+AGG + chr7_4:59117229-59117248 None:intergenic 15.0%
!!! TCTATATTTTATTTTACTGA+AGG - chr7_4:59117595-59117614 Msa1166960:intron 15.0%
!! ATCTATTAAAGAAACAAATT+TGG + chr7_4:59117792-59117811 None:intergenic 15.0%
!! ACATACTTAAATATATGATT+TGG + chr7_4:59120268-59120287 None:intergenic 15.0%
!! AATATGAATAGATAGAATAA+TGG - chr7_4:59120857-59120876 Msa1166960:CDS 15.0%
!! TACATAGTTGTATCTAATTA+AGG - chr7_4:59117120-59117139 Msa1166960:three_prime_UTR 20.0%
!! TAACAAAAGAAATAGGAATA+CGG + chr7_4:59117222-59117241 None:intergenic 20.0%
!! CAAAACATTTCAATGAAATA+TGG + chr7_4:59118409-59118428 None:intergenic 20.0%
!!! ATTTCATTGAAATGTTTTGT+AGG - chr7_4:59118410-59118429 Msa1166960:intron 20.0%
!!! TGTAATGGTAGTTATTTTAT+TGG + chr7_4:59119435-59119454 None:intergenic 20.0%
!! AAAAAATCGTACATTAAAGA+AGG - chr7_4:59119576-59119595 Msa1166960:intron 20.0%
!! AAAATTGATATTTACGTTGA+AGG + chr7_4:59119747-59119766 None:intergenic 20.0%
!! TGATAACTGTTTAAACATAT+TGG - chr7_4:59119923-59119942 Msa1166960:intron 20.0%
!!! ACCATTAAAAAAGAAACTTT+TGG + chr7_4:59120060-59120079 None:intergenic 20.0%
!!! ATTCTTTTGGTTTAGTATTT+TGG - chr7_4:59120231-59120250 Msa1166960:CDS 20.0%
!!! TTCTTTTGGTTTAGTATTTT+GGG - chr7_4:59120232-59120251 Msa1166960:CDS 20.0%
!! ACATGTAAGTAAACTATATT+AGG - chr7_4:59121091-59121110 Msa1166960:CDS 20.0%
!!! TAATAAGATTTTGGTCAATT+TGG + chr7_4:59121291-59121310 None:intergenic 20.0%
!!! CTGCAATTATAATAAGATTT+TGG + chr7_4:59121300-59121319 None:intergenic 20.0%
!! CAAAATCTTATTATAATTGC+AGG - chr7_4:59121298-59121317 Msa1166960:CDS 20.0%
!! GATACATTACTTGAAAAATA+AGG - chr7_4:59121769-59121788 Msa1166960:five_prime_UTR 20.0%
! AACAAAAGAAATAGGAATAC+GGG + chr7_4:59117221-59117240 None:intergenic 25.0%
!!! ATTGATTTTCTCACAAATTG+AGG + chr7_4:59117651-59117670 None:intergenic 25.0%
! ATTTGTGAGAAAATCAATAC+CGG - chr7_4:59117653-59117672 Msa1166960:intron 25.0%
! AGTAATAAAAAGCCAAATCA+AGG + chr7_4:59118063-59118082 None:intergenic 25.0%
! TTAGAGAAAAAGTTGAAAGA+AGG - chr7_4:59118268-59118287 Msa1166960:intron 25.0%
!! ATGTTTTGTAGGTTCAATTA+AGG - chr7_4:59118421-59118440 Msa1166960:intron 25.0%
! GAAATAATTTAAACAGCCAT+TGG + chr7_4:59118724-59118743 None:intergenic 25.0%
! AAAACCTCAAGATAAATGTT+TGG - chr7_4:59118754-59118773 Msa1166960:intron 25.0%
! TGTTGCAGTAATTATCTTAA+TGG - chr7_4:59118848-59118867 Msa1166960:intron 25.0%
!! CTTTAACATTCATTTTCTGA+TGG - chr7_4:59118889-59118908 Msa1166960:intron 25.0%
!! TTTTCTGATGGTAATATCAT+AGG - chr7_4:59118901-59118920 Msa1166960:intron 25.0%
!!! AGGTTTTATCAAACTAGTTA+AGG + chr7_4:59119088-59119107 None:intergenic 25.0%
!! ACTAGTTTGATAAAACCTTA+AGG - chr7_4:59119090-59119109 Msa1166960:CDS 25.0%
! CTAGTTTGATAAAACCTTAA+GGG - chr7_4:59119091-59119110 Msa1166960:CDS 25.0%
!! TATATGTTTGTTAGTTGAAG+CGG - chr7_4:59119311-59119330 Msa1166960:intron 25.0%
!! TCTTGTAGTCAATTACATTT+TGG + chr7_4:59119971-59119990 None:intergenic 25.0%
!!! GCCAAAAGTTTCTTTTTTAA+TGG - chr7_4:59120056-59120075 Msa1166960:intron 25.0%
!!! TTTCTTTTTTAATGGTGTGA+GGG - chr7_4:59120064-59120083 Msa1166960:intron 25.0%
! GCTTATCTAATATAAACTGT+TGG + chr7_4:59120107-59120126 None:intergenic 25.0%
! AGTTTATATTAGATAAGCCT+GGG - chr7_4:59120109-59120128 Msa1166960:CDS 25.0%
! AACATACTACCATAAACATA+AGG - chr7_4:59120138-59120157 Msa1166960:CDS 25.0%
! ACATACTACCATAAACATAA+GGG - chr7_4:59120139-59120158 Msa1166960:CDS 25.0%
! TAAACTAGTTAAACAAAACC+AGG - chr7_4:59120178-59120197 Msa1166960:CDS 25.0%
! AAACCTATTAAATATGCATG+TGG - chr7_4:59120401-59120420 Msa1166960:CDS 25.0%
! TTGAAATACTGAAAAGAGAT+AGG - chr7_4:59120613-59120632 Msa1166960:CDS 25.0%
!! AATAGATAGAATAATGGAGA+TGG - chr7_4:59120863-59120882 Msa1166960:CDS 25.0%
! ATTATTATTGAACTTCTCTG+TGG - chr7_4:59120893-59120912 Msa1166960:CDS 25.0%
!! TACAATTTTACAATTCCTCT+AGG - chr7_4:59120986-59121005 Msa1166960:intron 25.0%
!!! TATATTAGGCCTTGTTTATT+GGG - chr7_4:59121105-59121124 Msa1166960:CDS 25.0%
! TTTATATAATTGCTCAACCT+TGG + chr7_4:59121628-59121647 None:intergenic 25.0%
TTTGTACTTTCCGAAGAATA+AGG + chr7_4:59117087-59117106 None:intergenic 30.0%
! TGTCTTAATTGTTGTTGAGA+AGG - chr7_4:59117330-59117349 Msa1166960:CDS 30.0%
GTATATTGTCTACTTCAGAT+TGG - chr7_4:59117815-59117834 Msa1166960:intron 30.0%
! TCTAGCTTAATGGTTAACTT+TGG - chr7_4:59118034-59118053 Msa1166960:intron 30.0%
! CAGTCTGAATCGTAAATTTT+AGG + chr7_4:59118101-59118120 None:intergenic 30.0%
CTAAAATTTACGATTCAGAC+TGG - chr7_4:59118099-59118118 Msa1166960:intron 30.0%
TCAATTGATTGCTCAAATTC+AGG - chr7_4:59118369-59118388 Msa1166960:intron 30.0%
CTGTTGCATATAACACATTA+TGG + chr7_4:59118458-59118477 None:intergenic 30.0%
CATAATGTGTTATATGCAAC+AGG - chr7_4:59118456-59118475 Msa1166960:intron 30.0%
! ATCAAACTTCAGTCTCATTT+TGG - chr7_4:59118505-59118524 Msa1166960:intron 30.0%
TCACATTGCTAAATATTACC+AGG - chr7_4:59118654-59118673 Msa1166960:intron 30.0%
CACATTGCTAAATATTACCA+GGG - chr7_4:59118655-59118674 Msa1166960:intron 30.0%
ACATTGCTAAATATTACCAG+GGG - chr7_4:59118656-59118675 Msa1166960:intron 30.0%
TTAGCCAAACATTTATCTTG+AGG + chr7_4:59118761-59118780 None:intergenic 30.0%
GATAAATGTTTGGCTAAAGT+TGG - chr7_4:59118764-59118783 Msa1166960:intron 30.0%
!!! TGTTTTGGAATGCAGAAATA+AGG + chr7_4:59119032-59119051 None:intergenic 30.0%
!!! AATGAACAGATTGGTTTTAC+CGG + chr7_4:59119064-59119083 None:intergenic 30.0%
AGTTAAGGAAATGAACAGAT+TGG + chr7_4:59119073-59119092 None:intergenic 30.0%
AGAAAGTAAACAAACCCTTA+AGG + chr7_4:59119108-59119127 None:intergenic 30.0%
!! TGTGTTCGTTTTAAATTGCT+AGG - chr7_4:59119161-59119180 Msa1166960:CDS 30.0%
!! TCGTTTTAAATTGCTAGGAA+AGG - chr7_4:59119166-59119185 Msa1166960:CDS 30.0%
!! CGTTTTAAATTGCTAGGAAA+GGG - chr7_4:59119167-59119186 Msa1166960:CDS 30.0%
CAATTGTGATAGAGAAAAGA+TGG - chr7_4:59119212-59119231 Msa1166960:CDS 30.0%
AAGAAACGTGAGAAGTAAAT+GGG - chr7_4:59119344-59119363 Msa1166960:intron 30.0%
CTTCAAAATGAGAAAAGCTT+AGG + chr7_4:59119371-59119390 None:intergenic 30.0%
!! TCGATTCTATTTCTGTAACA+TGG - chr7_4:59119494-59119513 Msa1166960:intron 30.0%
TTCTCCTGAAAATAATATGC+TGG + chr7_4:59119522-59119541 None:intergenic 30.0%
!! TTTGCTATTTCTTCTTTGGT+GGG + chr7_4:59119612-59119631 None:intergenic 30.0%
ATACTTGTGCAAATTTGAGA+TGG + chr7_4:59119995-59120014 None:intergenic 30.0%
ACAAGTATTAAGTTCTGTTG+TGG - chr7_4:59120007-59120026 Msa1166960:intron 30.0%
!!! GTTTCTTTTTTAATGGTGTG+AGG - chr7_4:59120063-59120082 Msa1166960:intron 30.0%
CAGTTTATATTAGATAAGCC+TGG - chr7_4:59120108-59120127 Msa1166960:CDS 30.0%
! GGTTTCATTCATCATTCTTT+TGG - chr7_4:59120218-59120237 Msa1166960:CDS 30.0%
AAGCTTGTGAAATATGATGT+TGG - chr7_4:59120330-59120349 Msa1166960:intron 30.0%
!! TATGATGTTGGTCTTGTTTA+AGG - chr7_4:59120342-59120361 Msa1166960:intron 30.0%
! ATTTAGTCTAGTTTAACCTG+AGG + chr7_4:59120373-59120392 None:intergenic 30.0%
! ATTTTGTTCCTTACAGAAGT+TGG - chr7_4:59120453-59120472 Msa1166960:CDS 30.0%
TCAATTCTGTAATAAGAGAG+TGG - chr7_4:59120736-59120755 Msa1166960:intron 30.0%
TAAGAGAGTGGATCAAATAT+AGG - chr7_4:59120748-59120767 Msa1166960:intron 30.0%
AAGAGAGTGGATCAAATATA+GGG - chr7_4:59120749-59120768 Msa1166960:intron 30.0%
TGTTTATGTTGGATTACCTT+GGG + chr7_4:59121032-59121051 None:intergenic 30.0%
TTGTTTATGTTGGATTACCT+TGG + chr7_4:59121033-59121052 None:intergenic 30.0%
!! CTATATTAGGCCTTGTTTAT+TGG - chr7_4:59121104-59121123 Msa1166960:CDS 30.0%
TTAATTTATGCCTGTATGTG+AGG + chr7_4:59121203-59121222 None:intergenic 30.0%
! CTAAGATTTGGTATTGAAGA+TGG - chr7_4:59121440-59121459 Msa1166960:intron 30.0%
GAGAAATCTTTGTCAGAAAT+TGG - chr7_4:59121467-59121486 Msa1166960:intron 30.0%
AGAATAAGGAGGTAATCAGA+TGG + chr7_4:59117073-59117092 None:intergenic 35.0%
CTGATTACCTCCTTATTCTT+CGG - chr7_4:59117074-59117093 Msa1166960:three_prime_UTR 35.0%
TACTGTGCAGAAAAACTAGT+AGG + chr7_4:59117417-59117436 None:intergenic 35.0%
TCTTGTAAAAGAACAGAGGT+AGG + chr7_4:59117444-59117463 None:intergenic 35.0%
ATGCTCTTGTAAAAGAACAG+AGG + chr7_4:59117448-59117467 None:intergenic 35.0%
TCTTTACAGGTATGAAGTAG+CGG + chr7_4:59117486-59117505 None:intergenic 35.0%
ACACGTAAAAATGTGAACCT+GGG + chr7_4:59117520-59117539 None:intergenic 35.0%
TACACGTAAAAATGTGAACC+TGG + chr7_4:59117521-59117540 None:intergenic 35.0%
ATGATGATTCACTACCTCTT+GGG - chr7_4:59118006-59118025 Msa1166960:intron 35.0%
!! TTGGGTTAGTTCTAGCTTAA+TGG - chr7_4:59118024-59118043 Msa1166960:intron 35.0%
TAACTTTGGCATCCTTGATT+TGG - chr7_4:59118048-59118067 Msa1166960:intron 35.0%
TTGGAAAGAACAAAATCGTG+AGG - chr7_4:59118134-59118153 Msa1166960:intron 35.0%
ACAAAATCGTGAGGTCAATA+CGG - chr7_4:59118143-59118162 Msa1166960:intron 35.0%
!! GTACATCGGACTTTTTAGTA+AGG + chr7_4:59118234-59118253 None:intergenic 35.0%
AAAAGTCCGATGTACAAAGA+AGG - chr7_4:59118239-59118258 Msa1166960:intron 35.0%
ACGTAACCTTCTTTGTACAT+CGG + chr7_4:59118248-59118267 None:intergenic 35.0%
AAGTTGAAAGAAGGACTTGA+CGG - chr7_4:59118277-59118296 Msa1166960:CDS 35.0%
!! CTCAAAAGTTGCTTTGTTTC+AGG + chr7_4:59118334-59118353 None:intergenic 35.0%
! AACTTCAGTCTCATTTTGGA+AGG - chr7_4:59118509-59118528 Msa1166960:intron 35.0%
!! ACTTCAGTCTCATTTTGGAA+GGG - chr7_4:59118510-59118529 Msa1166960:intron 35.0%
ATTTAGCAATGTGAACTACC+AGG + chr7_4:59118648-59118667 None:intergenic 35.0%
TCTGATGGTAATATCATAGG+AGG - chr7_4:59118904-59118923 Msa1166960:intron 35.0%
CTGATGGTAATATCATAGGA+GGG - chr7_4:59118905-59118924 Msa1166960:intron 35.0%
AATATCATAGGAGGGAAGTA+TGG - chr7_4:59118913-59118932 Msa1166960:intron 35.0%
! ATATCATAGGAGGGAAGTAT+GGG - chr7_4:59118914-59118933 Msa1166960:intron 35.0%
GATAAGGCAAACAATAAGGA+GGG - chr7_4:59119006-59119025 Msa1166960:intron 35.0%
TGTGATAGAGAAAAGATGGA+AGG - chr7_4:59119216-59119235 Msa1166960:CDS 35.0%
CAAGAAACGTGAGAAGTAAA+TGG - chr7_4:59119343-59119362 Msa1166960:intron 35.0%
!!! GCTTTTCTCATTTTGAAGTG+TGG - chr7_4:59119373-59119392 Msa1166960:intron 35.0%
!!! CATTTTGAAGTGTGGATTGT+CGG - chr7_4:59119381-59119400 Msa1166960:intron 35.0%
AGGCATGGAATTGTTGTATA+TGG - chr7_4:59119405-59119424 Msa1166960:intron 35.0%
! GGTACCAGCATATTATTTTC+AGG - chr7_4:59119515-59119534 Msa1166960:intron 35.0%
! GAGAATTTCTATGCCCTTTT+GGG - chr7_4:59119537-59119556 Msa1166960:intron 35.0%
!! TTGCTATTTCTTCTTTGGTG+GGG + chr7_4:59119611-59119630 None:intergenic 35.0%
!! CTTTGCTATTTCTTCTTTGG+TGG + chr7_4:59119613-59119632 None:intergenic 35.0%
!! TCGCTTTGCTATTTCTTCTT+TGG + chr7_4:59119616-59119635 None:intergenic 35.0%
GAGTAGGAATTACAGTAGAT+AGG - chr7_4:59119634-59119653 Msa1166960:intron 35.0%
AGGAATTACAGTAGATAGGT+TGG - chr7_4:59119638-59119657 Msa1166960:intron 35.0%
TAGTAAGTGATATCGTTGCA+GGG + chr7_4:59119771-59119790 None:intergenic 35.0%
ATCAGTGCAAGCAAAAAACT+CGG + chr7_4:59119907-59119926 None:intergenic 35.0%
TTAAGTTCTGTTGTGGATGA+TGG - chr7_4:59120014-59120033 Msa1166960:intron 35.0%
GCTTGATACCCTTATGTTTA+TGG + chr7_4:59120150-59120169 None:intergenic 35.0%
ACTAGTTAAACAAAACCAGG+TGG - chr7_4:59120181-59120200 Msa1166960:CDS 35.0%
TTAAACAAAACCAGGTGGTT+TGG - chr7_4:59120186-59120205 Msa1166960:CDS 35.0%
CTGCCACATGCATATTTAAT+AGG + chr7_4:59120407-59120426 None:intergenic 35.0%
CAAATGATCCAACTTCTGTA+AGG + chr7_4:59120464-59120483 None:intergenic 35.0%
!! CATTGAGTTTACTTTTGTGC+TGG + chr7_4:59120564-59120583 None:intergenic 35.0%
ATTGCAACATTAGAGAGAGT+CGG - chr7_4:59120643-59120662 Msa1166960:CDS 35.0%
! TCTTGCTATGTCTAACGATT+GGG + chr7_4:59120778-59120797 None:intergenic 35.0%
GACCAAGAAAAGCTAACTAT+TGG - chr7_4:59120796-59120815 Msa1166960:CDS 35.0%
!!! CTCCAATAGTTAGCTTTTCT+TGG + chr7_4:59120801-59120820 None:intergenic 35.0%
!! TACGATTCGGTTGTTTATGT+TGG + chr7_4:59121043-59121062 None:intergenic 35.0%
GACGAACATTTACTACGATT+CGG + chr7_4:59121056-59121075 None:intergenic 35.0%
AGCATGAATATATCTCTAGC+AGG + chr7_4:59121131-59121150 None:intergenic 35.0%
GAGATATATTCATGCTAGAG+CGG - chr7_4:59121135-59121154 Msa1166960:CDS 35.0%
AGATATATTCATGCTAGAGC+GGG - chr7_4:59121136-59121155 Msa1166960:CDS 35.0%
! GTTTTGCAACACATACAGTT+GGG + chr7_4:59121352-59121371 None:intergenic 35.0%
! TGTTTTGCAACACATACAGT+TGG + chr7_4:59121353-59121372 None:intergenic 35.0%
GTGTTGCAAAACAACTAATG+AGG - chr7_4:59121360-59121379 Msa1166960:CDS 35.0%
! GTATTTTGCCTCCAAAAGAA+AGG - chr7_4:59121405-59121424 Msa1166960:intron 35.0%
ATCTTTGTCAGAAATTGGCA+AGG - chr7_4:59121472-59121491 Msa1166960:intron 35.0%
! CATCAAGTTGTTGACTAACA+AGG + chr7_4:59121565-59121584 None:intergenic 35.0%
TTGATCAATAGCATACACCA+AGG - chr7_4:59121608-59121627 Msa1166960:exon 35.0%
GTACTTTCCGAAGAATAAGG+AGG + chr7_4:59117084-59117103 None:intergenic 40.0%
! GGAAGAATTCTAGAAGGGAA+TGG + chr7_4:59117184-59117203 None:intergenic 40.0%
! GGGAAGGAAGAATTCTAGAA+GGG + chr7_4:59117189-59117208 None:intergenic 40.0%
! GGGTGATTTGTCTTCTTTAC+AGG + chr7_4:59117499-59117518 None:intergenic 40.0%
TAAAGAAGACAAATCACCCC+AGG - chr7_4:59117500-59117519 Msa1166960:intron 40.0%
CACGTAAAAATGTGAACCTG+GGG + chr7_4:59117519-59117538 None:intergenic 40.0%
TGAAGGCAACATTAAACACG+AGG - chr7_4:59117612-59117631 Msa1166960:intron 40.0%
GAAGGCAACATTAAACACGA+GGG - chr7_4:59117613-59117632 Msa1166960:intron 40.0%
ACATTAAACACGAGGGTAAC+AGG - chr7_4:59117620-59117639 Msa1166960:intron 40.0%
GAAGAAACGAAATCCTCTTC+CGG + chr7_4:59117849-59117868 None:intergenic 40.0%
AGTGGCTGAAGAGTTGAAAT+TGG - chr7_4:59117962-59117981 Msa1166960:intron 40.0%
GATGATGATTCACTACCTCT+TGG - chr7_4:59118005-59118024 Msa1166960:intron 40.0%
TAAGCTAGAACTAACCCAAG+AGG + chr7_4:59118023-59118042 None:intergenic 40.0%
GTTCTTTCCAAGTGAAGAGT+CGG + chr7_4:59118125-59118144 None:intergenic 40.0%
GGTCAATACGGCTTAAAGAA+AGG - chr7_4:59118155-59118174 Msa1166960:intron 40.0%
!! TTTTGGAAGGGAACCAACTT+TGG - chr7_4:59118522-59118541 Msa1166960:intron 40.0%
CACAATGAAGTCGTTTCTGA+AGG + chr7_4:59118585-59118604 None:intergenic 40.0%
CTTCAGAAACGACTTCATTG+TGG - chr7_4:59118583-59118602 Msa1166960:intron 40.0%
ATACCTGCAATAAGTCCTGA+AGG + chr7_4:59118693-59118712 None:intergenic 40.0%
AAAGTTGGAACTGCAGTTGT+AGG - chr7_4:59118779-59118798 Msa1166960:intron 40.0%
! ACTTTTCGACACTCCTCATA+AGG + chr7_4:59118940-59118959 None:intergenic 40.0%
!! AGTAAGCGTAAGTACTGAAC+CGG + chr7_4:59118982-59119001 None:intergenic 40.0%
GGTGGATAAGGCAAACAATA+AGG - chr7_4:59119002-59119021 Msa1166960:intron 40.0%
GGATAAGGCAAACAATAAGG+AGG - chr7_4:59119005-59119024 Msa1166960:intron 40.0%
TTCCAAAACAATTCGTCTGC+CGG - chr7_4:59119042-59119061 Msa1166960:intron 40.0%
! GGAGAATTTCTATGCCCTTT+TGG - chr7_4:59119536-59119555 Msa1166960:intron 40.0%
GAAGAAATAGCAAAGCGAGT+AGG - chr7_4:59119618-59119637 Msa1166960:intron 40.0%
CTAGTAAGTGATATCGTTGC+AGG + chr7_4:59119772-59119791 None:intergenic 40.0%
! TTCAACTCCCCATTTTGTAC+TGG - chr7_4:59119862-59119881 Msa1166960:intron 40.0%
CAAATCAAAACCAAACCACC+TGG + chr7_4:59120199-59120218 None:intergenic 40.0%
!!! CAGGTGGTTTGGTTTTGATT+TGG - chr7_4:59120197-59120216 Msa1166960:CDS 40.0%
! CTTGTTTAAGGTTGATCCTC+AGG - chr7_4:59120354-59120373 Msa1166960:intron 40.0%
AATATGCATGTGGCAGTGAT+TGG - chr7_4:59120411-59120430 Msa1166960:CDS 40.0%
! TCAAGAGGGTGCATATTAAC+AGG + chr7_4:59120495-59120514 None:intergenic 40.0%
GTTAATATGCACCCTCTTGA+TGG - chr7_4:59120495-59120514 Msa1166960:CDS 40.0%
AAACAGGCATACCATCAAGA+GGG + chr7_4:59120509-59120528 None:intergenic 40.0%
AAAACAGGCATACCATCAAG+AGG + chr7_4:59120510-59120529 None:intergenic 40.0%
!!! ATGCCTGTTTTTGCAAGTGA+CGG - chr7_4:59120519-59120538 Msa1166960:CDS 40.0%
TTGCAACATTAGAGAGAGTC+GGG - chr7_4:59120644-59120663 Msa1166960:CDS 40.0%
AGATGCTTGAATCTCGACTT+AGG - chr7_4:59120686-59120705 Msa1166960:intron 40.0%
AATCTCGACTTAGGTGGTTT+GGG - chr7_4:59120695-59120714 Msa1166960:intron 40.0%
! GTCTTGCTATGTCTAACGAT+TGG + chr7_4:59120779-59120798 None:intergenic 40.0%
AACAGAGTGGTTACACAACA+GGG - chr7_4:59120926-59120945 Msa1166960:CDS 40.0%
!! TGTATGATGGGTGTATGACA+CGG - chr7_4:59121159-59121178 Msa1166960:intron 40.0%
TTTATGCCTGTATGTGAGGT+CGG + chr7_4:59121199-59121218 None:intergenic 40.0%
!! CTTTTGGAGGCAAAATACCT+AGG + chr7_4:59121403-59121422 None:intergenic 40.0%
TTTGCCTCCAAAAGAAAGGA+AGG - chr7_4:59121409-59121428 Msa1166960:intron 40.0%
! AGTACCTTCCTTTCTTTTGG+AGG + chr7_4:59121416-59121435 None:intergenic 40.0%
! CTGAGTACCTTCCTTTCTTT+TGG + chr7_4:59121419-59121438 None:intergenic 40.0%
!! CAAAAGAAAGGAAGGTACTC+AGG - chr7_4:59121417-59121436 Msa1166960:intron 40.0%
! AAGGTACTCAGGCTAAGATT+TGG - chr7_4:59121428-59121447 Msa1166960:intron 40.0%
! TCAGAAATTGGCAAGGTGTT+GGG - chr7_4:59121479-59121498 Msa1166960:intron 40.0%
CTAGAAGGGAATGGTGTAGA+CGG + chr7_4:59117175-59117194 None:intergenic 45.0%
GGGGAAGGAAGAATTCTAGA+AGG + chr7_4:59117190-59117209 None:intergenic 45.0%
AGAATTCTTCCTTCCCCTTC+AGG - chr7_4:59117193-59117212 Msa1166960:CDS 45.0%
TAGGAATACGGGTACCTGAA+GGG + chr7_4:59117210-59117229 None:intergenic 45.0%
ATAGGAATACGGGTACCTGA+AGG + chr7_4:59117211-59117230 None:intergenic 45.0%
!! AAGAGCATCGCGATGAGTAT+AGG - chr7_4:59117460-59117479 Msa1166960:intron 45.0%
GTATGCAGCAGTTGCATCTT+CGG - chr7_4:59117702-59117721 Msa1166960:intron 45.0%
CAAGAGTAAGTGCATCCCAT+TGG + chr7_4:59117905-59117924 None:intergenic 45.0%
ATGCTCTGCGCTTGTTCTTA+TGG - chr7_4:59118305-59118324 Msa1166960:intron 45.0%
GGAACCAACTTTGGCTGAAT+GGG - chr7_4:59118531-59118550 Msa1166960:intron 45.0%
GAAAAGTTCAAACCCCAAGC+TGG - chr7_4:59118953-59118972 Msa1166960:intron 45.0%
GGTTCAGTACTTACGCTTAC+TGG - chr7_4:59118981-59119000 Msa1166960:intron 45.0%
TCAGTACTTACGCTTACTGG+TGG - chr7_4:59118984-59119003 Msa1166960:intron 45.0%
! CTTACGCTTACTGGTGGATA+AGG - chr7_4:59118990-59119009 Msa1166960:intron 45.0%
! TACCGGCAGACGAATTGTTT+TGG + chr7_4:59119047-59119066 None:intergenic 45.0%
! TTGAAGTGTGGATTGTCGGT+AGG - chr7_4:59119385-59119404 Msa1166960:intron 45.0%
TTCCGCAATCTTGCCCAAAA+GGG + chr7_4:59119553-59119572 None:intergenic 45.0%
TACAAGAACTCCGCTTTCGA+TGG - chr7_4:59119677-59119696 Msa1166960:intron 45.0%
CCACTCACCAGTACAAAATG+GGG + chr7_4:59119872-59119891 None:intergenic 45.0%
GCCACTCACCAGTACAAAAT+GGG + chr7_4:59119873-59119892 None:intergenic 45.0%
GGTAGTATGTTATGCTTCCC+AGG + chr7_4:59120129-59120148 None:intergenic 45.0%
ACTCCGTCACTTGCAAAAAC+AGG + chr7_4:59120525-59120544 None:intergenic 45.0%
!! TTTTGCAAGTGACGGAGTGT+TGG - chr7_4:59120527-59120546 Msa1166960:CDS 45.0%
! TTTGCAAGTGACGGAGTGTT+GGG - chr7_4:59120528-59120547 Msa1166960:CDS 45.0%
TGCAACATTAGAGAGAGTCG+GGG - chr7_4:59120645-59120664 Msa1166960:CDS 45.0%
TGCTTGAATCTCGACTTAGG+TGG - chr7_4:59120689-59120708 Msa1166960:intron 45.0%
GAATCTCGACTTAGGTGGTT+TGG - chr7_4:59120694-59120713 Msa1166960:intron 45.0%
TGGATAACTGTCCAACAGAG+TGG - chr7_4:59120913-59120932 Msa1166960:CDS 45.0%
CTGTTGTGTAACCACTCTGT+TGG + chr7_4:59120927-59120946 None:intergenic 45.0%
CAACAGAGTGGTTACACAAC+AGG - chr7_4:59120925-59120944 Msa1166960:CDS 45.0%
ACAGAGTGGTTACACAACAG+GGG - chr7_4:59120927-59120946 Msa1166960:CDS 45.0%
CTAGGCTCTCTAATTCCTAG+AGG + chr7_4:59121004-59121023 None:intergenic 45.0%
TCTAGCAGGCCCAATAAACA+AGG + chr7_4:59121117-59121136 None:intergenic 45.0%
TTGGAGGCAAAATACCTAGG+AGG + chr7_4:59121400-59121419 None:intergenic 45.0%
GTCAGAAATTGGCAAGGTGT+TGG - chr7_4:59121478-59121497 Msa1166960:intron 45.0%
TAAGGAGAGGGTCAGACAAT+TGG - chr7_4:59121508-59121527 Msa1166960:intron 45.0%
!! ATTAAAAAAAATTAATGTAA+TGG + chr7_4:59119450-59119469 None:intergenic 5.0%
!! TGAGGTTGAGCGTTGAAGTG+TGG - chr7_4:59116999-59117018 Msa1166960:three_prime_UTR 50.0%
AGGAATACGGGTACCTGAAG+GGG + chr7_4:59117209-59117228 None:intergenic 50.0%
AAGAAGCTGCAGGAACAGCT+TGG + chr7_4:59117389-59117408 None:intergenic 50.0%
CTGTTCCTGCAGCTTCTTCT+TGG - chr7_4:59117391-59117410 Msa1166960:CDS 50.0%
CGTCAACTCATCAACATCGC+CGG + chr7_4:59117675-59117694 None:intergenic 50.0%
!! CTTCAGATTGGCTTCTTCGC+CGG - chr7_4:59117827-59117846 Msa1166960:intron 50.0%
TCAACTATGCTGCCTGCTGA+TGG - chr7_4:59117876-59117895 Msa1166960:intron 50.0%
TGCCTGCTGATGGTTTCCAA+TGG - chr7_4:59117886-59117905 Msa1166960:intron 50.0%
GCCTGCTGATGGTTTCCAAT+GGG - chr7_4:59117887-59117906 Msa1166960:intron 50.0%
TCCCATTGGAAACCATCAGC+AGG + chr7_4:59117891-59117910 None:intergenic 50.0%
!!! CACTGCAGCAGCTTGTTTTG+AGG + chr7_4:59117946-59117965 None:intergenic 50.0%
CTCAAAACAAGCTGCTGCAG+TGG - chr7_4:59117944-59117963 Msa1166960:intron 50.0%
GGGAACCAACTTTGGCTGAA+TGG - chr7_4:59118530-59118549 Msa1166960:intron 50.0%
TCTGCCCATTCAGCCAAAGT+TGG + chr7_4:59118538-59118557 None:intergenic 50.0%
ACTTTGGCTGAATGGGCAGA+TGG - chr7_4:59118538-59118557 Msa1166960:intron 50.0%
TCTGAAGGTCACGACAGCTA+AGG + chr7_4:59118570-59118589 None:intergenic 50.0%
GATTCATGCCAACTTACGCC+TGG - chr7_4:59118627-59118646 Msa1166960:intron 50.0%
GTGAACTACCAGGCGTAAGT+TGG + chr7_4:59118638-59118657 None:intergenic 50.0%
GCTAAATATTACCAGGGGCG+TGG - chr7_4:59118661-59118680 Msa1166960:intron 50.0%
CTGCCTTCAGGACTTATTGC+AGG - chr7_4:59118687-59118706 Msa1166960:intron 50.0%
! GCAGGTATCGTCACTACCAA+TGG - chr7_4:59118705-59118724 Msa1166960:intron 50.0%
! AGGGAAGTATGGGCCTTATG+AGG - chr7_4:59118924-59118943 Msa1166960:intron 50.0%
! TGCCCTTTTGGGCAAGATTG+CGG - chr7_4:59119548-59119567 Msa1166960:intron 50.0%
CTTCCGCAATCTTGCCCAAA+AGG + chr7_4:59119554-59119573 None:intergenic 50.0%
TTTCGATGGAGCGAGCTGTA+TGG - chr7_4:59119691-59119710 Msa1166960:intron 50.0%
TTCGATGGAGCGAGCTGTAT+GGG - chr7_4:59119692-59119711 Msa1166960:intron 50.0%
AGACTCGGACACAACTTTCC+AGG - chr7_4:59119716-59119735 Msa1166960:intron 50.0%
TCGGACACAACTTTCCAGGT+AGG - chr7_4:59119720-59119739 Msa1166960:intron 50.0%
CGGACACAACTTTCCAGGTA+GGG - chr7_4:59119721-59119740 Msa1166960:intron 50.0%
TTTACGTTGAAGGCCCTACC+TGG + chr7_4:59119737-59119756 None:intergenic 50.0%
!! CCCCATTTTGTACTGGTGAG+TGG - chr7_4:59119869-59119888 Msa1166960:intron 50.0%
CGCCACTCACCAGTACAAAA+TGG + chr7_4:59119874-59119893 None:intergenic 50.0%
GGATTACCTTGGGAGAGACT+AGG + chr7_4:59121022-59121041 None:intergenic 50.0%
ATGCTAGAGCGGGTGTATGA+TGG - chr7_4:59121146-59121165 Msa1166960:CDS 50.0%
TGCTAGAGCGGGTGTATGAT+GGG - chr7_4:59121147-59121166 Msa1166960:CDS 50.0%
CTGTAACCGACCTCACATAC+AGG - chr7_4:59121190-59121209 Msa1166960:intron 50.0%
TACCTAGGAGGTTGCGTACA+TGG + chr7_4:59121388-59121407 None:intergenic 50.0%
!! CAAGGTGTTGGGTGTGTGTA+AGG - chr7_4:59121490-59121509 Msa1166960:intron 50.0%
TGTTGGGTGTGTGTAAGGAG+AGG - chr7_4:59121495-59121514 Msa1166960:intron 50.0%
GTTGGGTGTGTGTAAGGAGA+GGG - chr7_4:59121496-59121515 Msa1166960:intron 50.0%
! GCTTGAGCTTGTTCAACGCT+TGG + chr7_4:59121538-59121557 None:intergenic 50.0%
GAAGGGAATGGTGTAGACGG+AGG + chr7_4:59117172-59117191 None:intergenic 55.0%
ATACGGGTACCTGAAGGGGA+AGG + chr7_4:59117205-59117224 None:intergenic 55.0%
GCAGGAACAGCTTGGTCATG+AGG + chr7_4:59117381-59117400 None:intergenic 55.0%
GTAGGCCAAGAAGAAGCTGC+AGG + chr7_4:59117399-59117418 None:intergenic 55.0%
! ATTGGCTTCTTCGCCGGAAG+AGG - chr7_4:59117833-59117852 Msa1166960:intron 55.0%
! AGACTGGCCGACTCTTCACT+TGG - chr7_4:59118115-59118134 Msa1166960:intron 55.0%
GCTGAATGGGCAGATGGTGT+GGG - chr7_4:59118544-59118563 Msa1166960:intron 55.0%
TCAAACCCCAAGCTGGTTGC+CGG - chr7_4:59118960-59118979 Msa1166960:intron 55.0%
ACTGAACCGGCAACCAGCTT+GGG + chr7_4:59118969-59118988 None:intergenic 55.0%
TACTGAACCGGCAACCAGCT+TGG + chr7_4:59118970-59118989 None:intergenic 55.0%
! GTGTGGATTGTCGGTAGGCA+TGG - chr7_4:59119390-59119409 Msa1166960:intron 55.0%
ACAGCTCGCTCCATCGAAAG+CGG + chr7_4:59119690-59119709 None:intergenic 55.0%
AGAGAGCCTAGTCTCTCCCA+AGG - chr7_4:59121013-59121032 Msa1166960:intron 55.0%
AGCCATGTACGCAACCTCCT+AGG - chr7_4:59121383-59121402 Msa1166960:CDS 55.0%
GGCTGAATGGGCAGATGGTG+TGG - chr7_4:59118543-59118562 Msa1166960:intron 60.0%
CTGAACCGGCAACCAGCTTG+GGG + chr7_4:59118968-59118987 None:intergenic 60.0%
GCGAGCTGTATGGGCAGACT+CGG - chr7_4:59119701-59119720 Msa1166960:intron 60.0%
GAAGGCAGAGACCACGCCCC+TGG + chr7_4:59118675-59118694 None:intergenic 70.0%
GGGGCGTGGTCTCTGCCTTC+AGG - chr7_4:59118675-59118694 Msa1166960:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 59116992 59121793 59116992 ID=Msa1166960;Name=Msa1166960
chr7_4 mRNA 59116992 59121793 59116992 ID=Msa1166960-mRNA-1;Parent=Msa1166960;Name=Msa1166960-mRNA-1;_AED=0.14;_eAED=0.14;_QI=168|0.77|0.9|0.9|1|1|10|186|569
chr7_4 exon 59116992 59117465 59116992 ID=Msa1166960-mRNA-1:exon:18343;Parent=Msa1166960-mRNA-1
chr7_4 exon 59118269 59118316 59118269 ID=Msa1166960-mRNA-1:exon:18342;Parent=Msa1166960-mRNA-1
chr7_4 exon 59119048 59119248 59119048 ID=Msa1166960-mRNA-1:exon:18341;Parent=Msa1166960-mRNA-1
chr7_4 exon 59119722 59119862 59119722 ID=Msa1166960-mRNA-1:exon:18340;Parent=Msa1166960-mRNA-1
chr7_4 exon 59120077 59120307 59120077 ID=Msa1166960-mRNA-1:exon:18339;Parent=Msa1166960-mRNA-1
chr7_4 exon 59120395 59120668 59120395 ID=Msa1166960-mRNA-1:exon:18338;Parent=Msa1166960-mRNA-1
chr7_4 exon 59120758 59120952 59120758 ID=Msa1166960-mRNA-1:exon:18337;Parent=Msa1166960-mRNA-1
chr7_4 exon 59121044 59121168 59121044 ID=Msa1166960-mRNA-1:exon:18336;Parent=Msa1166960-mRNA-1
chr7_4 exon 59121264 59121415 59121264 ID=Msa1166960-mRNA-1:exon:18335;Parent=Msa1166960-mRNA-1
chr7_4 exon 59121571 59121793 59121571 ID=Msa1166960-mRNA-1:exon:18334;Parent=Msa1166960-mRNA-1
chr7_4 five_prime_UTR 59121626 59121793 59121626 ID=Msa1166960-mRNA-1:five_prime_utr;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59121571 59121625 59121571 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59121264 59121415 59121264 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59121044 59121168 59121044 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59120758 59120952 59120758 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59120395 59120668 59120395 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59120077 59120307 59120077 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59119722 59119862 59119722 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59119048 59119248 59119048 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59118269 59118316 59118269 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 CDS 59117178 59117465 59117178 ID=Msa1166960-mRNA-1:cds;Parent=Msa1166960-mRNA-1
chr7_4 three_prime_UTR 59116992 59117177 59116992 ID=Msa1166960-mRNA-1:three_prime_utr;Parent=Msa1166960-mRNA-1
Gene Sequence

>Msa1166960

ATGTTTTCTCCTCCGTCTACACCATTCCCTTCTAGAATTCTTCCTTCCCCTTCAGTTATGATGCCTCATGACCAAGCTGTTCCTGCAGCTTCTTCTTGGCCTACTAGTTTTTCTGCACAGTATTTTCCTACCTCTGTTCTTTTACAAGAGCATCGCGATGAGTATAGGCCGCTACTTCATACCTGTAAAGAAGACAAATCACCCCAGGCAACATTAAACACGAGGGTAACAGGTGTGACCTCAATTTGTGAGAAAATCAATACCGGCGATGTTGATGAGTTGACGCATAACTGTATGCAGCAGTTGCATCTTCGGTGTCATTTACAAAACTTATTGGCTTCTTCGCCGGAAGAGGATTTCGTTTCTTCTTCTTCTTCAACTATGCTGCCTGCTGATGGTTTCCAATGGGATGCACTTACTCTTGCTAAGCAAGCTCTATCAGCCTCAAAACAAGCTGCTGCAGTGGCTGAAGAGTTGAAATTGGTTAAAATTGACGATGATAATGATGATGATTCACTACCTCTTGGACTGGCCGACTCTTCACTTGGAAAGAACAAAATCGTGAGGTCAATACGGCTTAAAGAAAGGCGATCTAAACAGAGAAAAGTGTCTAACTCAAAAGTTCTTGATGACGAAATGTACCTTACTAAAAAGTCCGATGTACAAAGAAGGTTACGTTTAGAGAAAAAGTTGAAAGAAGGACTTGACGGAAATGATGCTCTGCGCTTGTTCTTATGGAGTCCTGAAACAAAGCAACTTTTGAGCATTGAAGAAGAATCTCAATTGATTGCTCAAATTCAGGATTTATTTAAATTAAAAGAAACAAAGATCAAACTTCAGTCTCATTTTGGAAGGGAACCAACTTTGGCTGAATGGGCAGATGGTGTGGGCCTTAGCTGTCGTGACCTTCAGAAACGACTTCATTGTGGTAACAGAAGCAAAGATAAACTGATTCATGCCAACTTACGCCTGGTAGTTCACATTGCTAAATATTACCAGGGGCGTGGTCTCTGCCTTCAGGACTTATTGCAGGAGGGAAGTATGGGCCTTATGAGGAGTGTCGAAAAGTTCAAACCCCAAGCTGGTTGCCGGTTCAGTACTTACGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTGCATTCCAAAACAATTCGTCTGCCGGAGAATTTCTATGCCCTTTTGGGCAAGATTGCGGAAGCAAAAAAATCGTACATTAAAGAAGGAAATCTTCACCCCACCAAAGAAGAAATAGCAAAGCGAGTAGGAATTACAGTAGATAGGTTGGAAATGTTGCTATTTTCTACAAGAACTCCGCTTTCGATGGAGCGAGCTGTATGGGCAGACTCGGACACAACTTTCCAGAAGTTGGATCATTTGAGCATTGACCTGTTAATATGCACCCTCTTGATGGAGATTACTGCAGACTCTGCAATTGAGATCCCAACTGTATGTGTTGCAAAACAACTAATGAGGAGCCATGTACGCAACCTCCTAGGTATTTTGCCTCCAAAAGAAAGGAAGGTACTCAGGCTAAGATTTGGTATTGAAGATGGCTATGAGAAATCTTTGTCAGAAATTGGCAAGGTGTTGGGTGTGTGTAAGGAGAGGGTCAGACAATTGGAGAGCCAAGCGTTGAACAAGCTCAAGCAGTGCCTTGTTAGTCAACAACTTGATGCATATGTAGACTTGATTGTATAG

Protein sequence

>Msa1166960

MFSPPSTPFPSRILPSPSVMMPHDQAVPAASSWPTSFSAQYFPTSVLLQEHRDEYRPLLHTCKEDKSPQATLNTRVTGVTSICEKINTGDVDELTHNCMQQLHLRCHLQNLLASSPEEDFVSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAEELKLVKIDDDNDDDSLPLGLADSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSDVQRRLRLEKKLKEGLDGNDALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLCLQDLLQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQKLDHLSIDLLICTLLMEITADSAIEIPTVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLSEIGKVLGVCKERVRQLESQALNKLKQCLVSQQLDAYVDLIV*