AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380440 MtrunA17_Chr3g0145921 88.991 327 23 6 1 315 1 326 3.98e-155 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380440 AT1G08540.1 39.193 347 148 12 6 314 2 323 8.62e-42 152

Find 160 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAATTCAAACGTTTCTT+AGG 0.116698 3_1:+82103347 None:intergenic
ACGCTTCTTCTCTTCTCTTC+TGG 0.135700 3_1:+82105064 None:intergenic
TCTAGAGATCTGGGAGCTTT+TGG 0.189205 3_1:+82102123 None:intergenic
GCCAGAAGAGTCAGAGCTTC+TGG 0.195456 3_1:-82104246 Msa0380440:CDS
CGCTTCTTCTCTTCTCTTCT+GGG 0.212244 3_1:+82105065 None:intergenic
CCTAAGAAACGTTTGAATTA+TGG 0.216811 3_1:-82103347 Msa0380440:exon
TCTTCGGCTGTTTCAGCTTC+AGG 0.261013 3_1:+82101953 None:intergenic
GTGTCTTGTAATTGTTGTTT+TGG 0.271370 3_1:+82104788 None:intergenic
GAGAGAAACAGGTGATTAAA+TGG 0.275402 3_1:-82101868 Msa0380440:three_prime_UTR
CTGAAAATTTACTTCTCAAA+TGG 0.275681 3_1:-82104479 Msa0380440:CDS
ATCAGTTGCTAAGAATTATC+AGG 0.278584 3_1:-82103276 Msa0380440:three_prime_UTR
CCCAGAAGCTCTGACTCTTC+TGG 0.279014 3_1:+82104245 None:intergenic
AAACAGTTGTACAGTGAAAA+TGG 0.280971 3_1:-82102222 Msa0380440:three_prime_UTR
TAGAGATAATGATGTTTAAA+TGG 0.290921 3_1:-82101449 Msa0380440:three_prime_UTR
CGGTGGGTAGGGATTCTGTC+TGG 0.304390 3_1:+82104925 None:intergenic
AACTTTCTGTTCTAGAGATC+TGG 0.306670 3_1:+82102113 None:intergenic
TATTGAAGTTAGCTTATTAC+AGG 0.306792 3_1:-82101676 Msa0380440:three_prime_UTR
CATTAAGCAGTTCATGAAAA+AGG 0.308002 3_1:-82101924 Msa0380440:three_prime_UTR
CAGGTGATTAAATGGAGATT+TGG 0.320492 3_1:-82101860 Msa0380440:three_prime_UTR
GAAGAAGTTGCCGAAGCAAC+TGG 0.327598 3_1:-82102183 Msa0380440:three_prime_UTR
AGAGAAGTATGATGCTTCTA+AGG 0.329199 3_1:-82102850 Msa0380440:three_prime_UTR
TTCAGAGAACTTAATTTCTT+CGG 0.359443 3_1:+82104083 None:intergenic
CCAGCCCACATTTGCTCAAT+GGG 0.361480 3_1:-82103398 Msa0380440:CDS
GTGGTTGTTGATTATGTTGT+GGG 0.362716 3_1:+82104520 None:intergenic
AAATGAAGTTTGTACGGTAT+TGG 0.371842 3_1:-82105280 Msa0380440:five_prime_UTR
TTAAAGTCATCCTCTTGGTT+GGG 0.376197 3_1:+82104369 None:intergenic
GCTAAGAATTATCAGGGATC+TGG 0.378393 3_1:-82103269 Msa0380440:three_prime_UTR
AAGCTAACTTCAATATTTGA+TGG 0.382497 3_1:+82101684 None:intergenic
TGAAGACACTGCAAGAGATT+GGG 0.385412 3_1:-82101820 Msa0380440:three_prime_UTR
TCGGCAACTTCTTCATCGTC+AGG 0.396141 3_1:+82102192 None:intergenic
ATGAAGACACTGCAAGAGAT+TGG 0.396405 3_1:-82101821 Msa0380440:three_prime_UTR
GCTCAATGGGCTACAATGGC+AGG 0.402429 3_1:-82103385 Msa0380440:CDS
AGTTCTCAACCTATGCTCAT+TGG 0.407789 3_1:-82102821 Msa0380440:three_prime_UTR
TGAAGATGTTCCATTATATC+TGG 0.410021 3_1:+82104399 None:intergenic
TGAAAATTTACTTCTCAAAT+GGG 0.410175 3_1:-82104478 Msa0380440:CDS
TTAATCACCTGTTTCTCTCT+AGG 0.411679 3_1:+82101872 None:intergenic
TCTCAATCCTAGAGAGAAAC+AGG 0.412404 3_1:-82101879 Msa0380440:three_prime_UTR
GCCAGCCCACATTTGCTCAA+TGG 0.421203 3_1:-82103399 Msa0380440:CDS
CCAGAAGAGTCAGAGCTTCT+GGG 0.422406 3_1:-82104245 Msa0380440:CDS
TTAGTTAATTGTTCGGAGAA+AGG 0.423808 3_1:-82104999 Msa0380440:five_prime_UTR
GATGATGATGGCGGTGGGTA+GGG 0.432222 3_1:+82104914 None:intergenic
AAAGGACCTGGAAAAGGTAT+TGG 0.433707 3_1:-82101906 Msa0380440:three_prime_UTR
CATCGACAGCCCAGTTGCTT+CGG 0.435866 3_1:+82102173 None:intergenic
TTATTCAAGAGAAAACAAAA+AGG 0.440516 3_1:-82101602 Msa0380440:three_prime_UTR
GGCAATGGATACAGCATCTT+CGG 0.444268 3_1:+82104437 None:intergenic
CTGCTTAATGAGCTGTTCTT+CGG 0.445939 3_1:+82101937 None:intergenic
TGCTCATTGGTGGATTAAAC+AGG 0.447444 3_1:-82102808 Msa0380440:three_prime_UTR
ACCAGCAGGACCAGATATAA+TGG 0.448188 3_1:-82104409 Msa0380440:CDS
GGTGGTGGAACCAGACTTGA+AGG 0.448899 3_1:+82104200 None:intergenic
TGGGATGAGTCTGCAAGATC+TGG 0.448927 3_1:-82103249 Msa0380440:three_prime_UTR
GCTTAACAGTTCCACATGGT+GGG 0.453802 3_1:-82102273 Msa0380440:intron
CTTCCCATTCGGATAAGAAA+AGG 0.454639 3_1:+82105115 None:intergenic
GAGAACTTAATTTCTTCGGA+TGG 0.458689 3_1:+82104087 None:intergenic
GGAAATGATGGGTGTAAGTA+GGG 0.462570 3_1:-82101798 Msa0380440:three_prime_UTR
TCATTTCATTCATTCATTCA+AGG 0.463108 3_1:+82105037 None:intergenic
TAAGTTCTCTGAAGGAATAC+AGG 0.465978 3_1:-82104073 Msa0380440:intron
CATAATTCAAACGTTTCTTA+GGG 0.466919 3_1:+82103348 None:intergenic
GGGAAATGATGGGTGTAAGT+AGG 0.467729 3_1:-82101799 Msa0380440:three_prime_UTR
CTTGAAGGAGACGATGTTTG+TGG 0.468675 3_1:+82104215 None:intergenic
TCCATTATATCTGGTCCTGC+TGG 0.469713 3_1:+82104408 None:intergenic
TAGTTAGTTAGTTAATTGTT+CGG 0.470287 3_1:-82105006 Msa0380440:five_prime_UTR
GGATGCCGCGGGCTTGTAAG+AGG 0.472869 3_1:-82102876 Msa0380440:three_prime_UTR
TCCTGCTGGTCCAGTGGCAA+TGG 0.473175 3_1:+82104422 None:intergenic
AGATCTCTAGAACAGAAAGT+TGG 0.474573 3_1:-82102111 Msa0380440:three_prime_UTR
AGCTAACTTCAATATTTGAT+GGG 0.478315 3_1:+82101685 None:intergenic
AAGTAAGAGAAAGCAAATGA+AGG 0.478974 3_1:-82101416 None:intergenic
TTTCTTATCCGAATGGGAAG+GGG 0.479510 3_1:-82105112 Msa0380440:five_prime_UTR
GATAATGATGTTTAAATGGA+GGG 0.483981 3_1:-82101445 Msa0380440:three_prime_UTR
AACATCGTCTCCTTCAAGTC+TGG 0.484299 3_1:-82104210 Msa0380440:CDS
ATTAAAGTCATCCTCTTGGT+TGG 0.488896 3_1:+82104368 None:intergenic
GAGCATCAAATTTGAAATCA+AGG 0.489172 3_1:+82104736 None:intergenic
CTAAGAATTATCAGGGATCT+GGG 0.490714 3_1:-82103268 Msa0380440:three_prime_UTR
GATCTCTAGAACAGAAAGTT+GGG 0.490872 3_1:-82102110 Msa0380440:three_prime_UTR
GGCTTAACAGTTCCACATGG+TGG 0.491941 3_1:-82102274 Msa0380440:intron
ACTTTCTGTTCTAGAGATCT+GGG 0.492366 3_1:+82102114 None:intergenic
ACCTTGGCCCTATGTCGCTC+AGG 0.493051 3_1:-82104688 Msa0380440:CDS
GGAGTTTGCCTGAGCGACAT+AGG 0.494093 3_1:+82104680 None:intergenic
GCAAGAGATTGGGGAAATGA+TGG 0.494350 3_1:-82101810 Msa0380440:three_prime_UTR
GGTGGGTAGGGATTCTGTCT+GGG 0.501734 3_1:+82104926 None:intergenic
TCTCAACCTATGCTCATTGG+TGG 0.502003 3_1:-82102818 Msa0380440:three_prime_UTR
GGTAAAATTAGACAGAGGTA+AGG 0.503347 3_1:-82105215 Msa0380440:five_prime_UTR
AGTAAGAGAAAGCAAATGAA+GGG 0.503463 3_1:-82101415 None:intergenic
GGTGGATTAAACAGGCAGTT+CGG 0.505718 3_1:-82102800 Msa0380440:three_prime_UTR
TCCATTGCCACTGGACCAGC+AGG 0.505748 3_1:-82104423 Msa0380440:CDS
TGAAGCTCTTACTCTTGCTA+AGG 0.508265 3_1:-82104592 Msa0380440:CDS
TAAAGTCATCCTCTTGGTTG+GGG 0.508635 3_1:+82104370 None:intergenic
AAAATACTGCTGCAAATGCT+TGG 0.508949 3_1:+82101718 None:intergenic
TTCTACAGATGAGGAGGAGG+AGG 0.510283 3_1:+82104659 None:intergenic
TGATTCTACAGATGAGGAGG+AGG 0.513896 3_1:+82104656 None:intergenic
TGGAGATTTGGTATGGATGA+TGG 0.516643 3_1:-82101848 Msa0380440:three_prime_UTR
CATCATTAAAGTCATCCTCT+TGG 0.522501 3_1:+82104364 None:intergenic
ATCTGGTCCTGCTGGTCCAG+TGG 0.527770 3_1:+82104416 None:intergenic
CCCATTGAGCAAATGTGGGC+TGG 0.527803 3_1:+82103398 None:intergenic
GTTGTTCTTAAGTAACGCAA+TGG 0.530950 3_1:+82104135 None:intergenic
TGATGATGATGGCGGTGGGT+AGG 0.533434 3_1:+82104913 None:intergenic
TCAAGTCTGGTTCCACCACC+AGG 0.536953 3_1:-82104197 Msa0380440:CDS
TAAACAAAATGAAGTTTGTA+CGG 0.538230 3_1:-82105286 Msa0380440:five_prime_UTR
GATTAAATGGAGATTTGGTA+TGG 0.540033 3_1:-82101855 Msa0380440:three_prime_UTR
TTCTTATCCGAATGGGAAGG+GGG 0.540429 3_1:-82105111 Msa0380440:five_prime_UTR
CTTAACAGTTCCACATGGTG+GGG 0.543723 3_1:-82102272 Msa0380440:intron
GGTGGTTGTTGATTATGTTG+TGG 0.547660 3_1:+82104519 None:intergenic
AGACTGAAAGTTTAAGACTC+TGG 0.548233 3_1:+82102082 None:intergenic
CTTGAATAATGAAGAAAATG+TGG 0.549898 3_1:+82101616 None:intergenic
TTCCCATTCGGATAAGAAAA+GGG 0.550030 3_1:+82105116 None:intergenic
TGTAGCCCATTGAGCAAATG+TGG 0.553613 3_1:+82103393 None:intergenic
AGATAATGATGTTTAAATGG+AGG 0.554277 3_1:-82101446 Msa0380440:three_prime_UTR
CTCAATGGGCTACAATGGCA+GGG 0.555592 3_1:-82103384 Msa0380440:CDS
TGGTTGTTGATTATGTTGTG+GGG 0.556371 3_1:+82104521 None:intergenic
CAATTAAGAAGGGTGAAGGA+AGG 0.557782 3_1:-82105236 Msa0380440:five_prime_UTR
TCTCAAATGGGTTCAACACA+TGG 0.558500 3_1:-82104466 Msa0380440:CDS
TCAGGGGTGGAAGGAAGTTG+CGG 0.559046 3_1:+82104498 None:intergenic
ATTTGCTCAATGGGCTACAA+TGG 0.559335 3_1:-82103389 Msa0380440:CDS
GAAGAAATTAAGTTCTCTGA+AGG 0.563158 3_1:-82104081 Msa0380440:CDS
GAAGACACTGCAAGAGATTG+GGG 0.566948 3_1:-82101819 Msa0380440:three_prime_UTR
GGCTGCTGCAAAGCTTGCAA+AGG 0.568821 3_1:-82104571 Msa0380440:CDS
GAGAAGTATGATGCTTCTAA+GGG 0.570079 3_1:-82102849 Msa0380440:three_prime_UTR
GAGTTTGCCTGAGCGACATA+GGG 0.570107 3_1:+82104681 None:intergenic
CAACTGGGCTGTCGATGAAG+AGG 0.570194 3_1:-82102167 Msa0380440:three_prime_UTR
AAGTGATTCTACAGATGAGG+AGG 0.571659 3_1:+82104653 None:intergenic
GTTGTTGATTATGTTGTGGG+GGG 0.573629 3_1:+82104523 None:intergenic
AGATGAGATGAGATTAGATG+AGG 0.573865 3_1:+82105141 None:intergenic
GGTTGTTGATTATGTTGTGG+GGG 0.579454 3_1:+82104522 None:intergenic
AAGAGTCAGAGCTTCTGGGA+AGG 0.580062 3_1:-82104241 Msa0380440:CDS
GATGCTGTATCCATTGCCAC+TGG 0.580093 3_1:-82104432 Msa0380440:CDS
TGAGGAACTTGAAGATGTAG+AGG 0.581553 3_1:-82104325 Msa0380440:CDS
ACTAGTATAGATGCAAGATC+CGG 0.582105 3_1:-82104288 Msa0380440:intron
TTTAATCCACCAATGAGCAT+AGG 0.584506 3_1:+82102812 None:intergenic
GAAAGAGATGATGATGATGA+TGG 0.585942 3_1:+82104902 None:intergenic
AATCACTTTCTGTTCAGTCA+AGG 0.588234 3_1:-82102776 Msa0380440:three_prime_UTR
GAGTCTGCAAGATCTGGTCC+AGG 0.588401 3_1:-82103243 Msa0380440:intron
GGTTACAGGAAGGATGCCGC+GGG 0.590724 3_1:-82102887 Msa0380440:intron
CTTATCCGAATGGGAAGGGG+GGG 0.592421 3_1:-82105109 Msa0380440:five_prime_UTR
AAGAAGTGATTCTACAGATG+AGG 0.593743 3_1:+82104650 None:intergenic
TCTTATCCGAATGGGAAGGG+GGG 0.597773 3_1:-82105110 Msa0380440:five_prime_UTR
GCCTGAGCGACATAGGGCCA+AGG 0.599872 3_1:+82104687 None:intergenic
TTAACAGTTCCACATGGTGG+GGG 0.603234 3_1:-82102271 Msa0380440:intron
AAGAAGTTGCCGAAGCAACT+GGG 0.609388 3_1:-82102182 Msa0380440:three_prime_UTR
TCTTCAAGTTCCTCAGAGGT+AGG 0.609680 3_1:+82104333 None:intergenic
TCAGTTGCTAAGAATTATCA+GGG 0.610615 3_1:-82103275 Msa0380440:three_prime_UTR
AATCTGAAAACTCACCACCT+TGG 0.611811 3_1:-82104704 Msa0380440:CDS
GGGTTACAGGAAGGATGCCG+CGG 0.612454 3_1:-82102888 Msa0380440:intron
TCTGGGTTGCAGATGAATTG+TGG 0.622138 3_1:+82104943 None:intergenic
CAAGAGATTGGGGAAATGAT+GGG 0.622941 3_1:-82101809 Msa0380440:three_prime_UTR
GATTTGGTATGGATGATGGA+AGG 0.625281 3_1:-82101844 Msa0380440:three_prime_UTR
TCAATGGGCTACAATGGCAG+GGG 0.637790 3_1:-82103383 Msa0380440:CDS
TGTTCGGAGAAAGGATAATG+TGG 0.639946 3_1:-82104990 Msa0380440:exon
TCACATTAGCCCCAACCAAG+AGG 0.641102 3_1:-82104379 Msa0380440:CDS
GAACAACAACTAGAACTACA+AGG 0.641229 3_1:-82104119 Msa0380440:CDS
AAAGCGTGTTCGTACACAAG+AGG 0.653089 3_1:-82104172 Msa0380440:CDS
AGGAAGGTAAAATTAGACAG+AGG 0.653464 3_1:-82105220 Msa0380440:five_prime_UTR
TGAGCGACATAGGGCCAAGG+TGG 0.654691 3_1:+82104690 None:intergenic
GAATAATGAAGAAAATGTGG+AGG 0.655093 3_1:+82101619 None:intergenic
GGGGTGGAAGGAAGTTGCGG+TGG 0.664288 3_1:+82104501 None:intergenic
GGCAACTTACAAAGTGAAGG+AGG 0.666025 3_1:-82102250 Msa0380440:three_prime_UTR
CTGCACCTCTTACAAGCCCG+CGG 0.671463 3_1:+82102871 None:intergenic
TTTGGCTTAACAGTTCCACA+TGG 0.676694 3_1:-82102277 Msa0380440:intron
TACATCTTCAAGTTCCTCAG+AGG 0.677856 3_1:+82104329 None:intergenic
TGTCGACGAGCCTACCTCTG+AGG 0.690720 3_1:-82104343 Msa0380440:CDS
GTAGCCCATTGAGCAAATGT+GGG 0.718383 3_1:+82103394 None:intergenic
AGGTAAGGAATTGAGTGACG+AGG 0.724366 3_1:-82105200 Msa0380440:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGTTTTCAATTAAGA+AGG - chr3_1:82101454-82101473 Msa0380440:three_prime_UTR 15.0%
!!! AAAAAGTTTTCAATTAAGAA+GGG - chr3_1:82101455-82101474 Msa0380440:three_prime_UTR 15.0%
!! AAGATATAACGATAAATATT+GGG + chr3_1:82102897-82102916 None:intergenic 15.0%
!!! ATGACAAATTTTAAAACTAT+AGG - chr3_1:82103571-82103590 Msa0380440:intron 15.0%
!! TAGTTAGTTAGTTAATTGTT+CGG - chr3_1:82101695-82101714 Msa0380440:three_prime_UTR 20.0%
!!! ATTTGAGAAGTAAATTTTCA+GGG + chr3_1:82102223-82102242 None:intergenic 20.0%
!! TGAAAATTTACTTCTCAAAT+GGG - chr3_1:82102223-82102242 Msa0380440:three_prime_UTR 20.0%
!! GAAGATATAACGATAAATAT+TGG + chr3_1:82102898-82102917 None:intergenic 20.0%
!! GAAAGAATATTAATAGTGAA+AGG - chr3_1:82103043-82103062 Msa0380440:intron 20.0%
!!! ATATAATTTGAAATATGCAC+TGG - chr3_1:82103545-82103564 Msa0380440:intron 20.0%
!!! TATAATTTGAAATATGCACT+GGG - chr3_1:82103546-82103565 Msa0380440:intron 20.0%
!!! AGACTTTTTTGCAATATTTT+TGG - chr3_1:82104406-82104425 Msa0380440:CDS 20.0%
!!! TATTCATTTTTCTGATACAT+TGG - chr3_1:82104693-82104712 Msa0380440:CDS 20.0%
!! ATAAAAAGAACAAAGATATC+AGG + chr3_1:82105052-82105071 None:intergenic 20.0%
!! TTATTCAAGAGAAAACAAAA+AGG - chr3_1:82105099-82105118 Msa0380440:five_prime_UTR 20.0%
!! AAAAAATAATGATGAACTCT+TGG + chr3_1:82105176-82105195 None:intergenic 20.0%
!!! ATCATTATTTTTTTTGTACG+TGG - chr3_1:82105183-82105202 Msa0380440:five_prime_UTR 20.0%
!!! ATTACTTTCTCCAATTTTTA+AGG + chr3_1:82105230-82105249 None:intergenic 20.0%
!! TAGAGATAATGATGTTTAAA+TGG - chr3_1:82105252-82105271 Msa0380440:five_prime_UTR 20.0%
! TCATTTCATTCATTCATTCA+AGG + chr3_1:82101667-82101686 None:intergenic 25.0%
!!! TGTCTTGTAATTGTTGTTTT+GGG + chr3_1:82101915-82101934 None:intergenic 25.0%
!! TATTTTGTCTTCTTCATCAA+CGG - chr3_1:82101938-82101957 Msa0380440:three_prime_UTR 25.0%
!! TTTGAGAAGTAAATTTTCAG+GGG + chr3_1:82102222-82102241 None:intergenic 25.0%
!! CATTTGAGAAGTAAATTTTC+AGG + chr3_1:82102224-82102243 None:intergenic 25.0%
! CTGAAAATTTACTTCTCAAA+TGG - chr3_1:82102222-82102241 Msa0380440:three_prime_UTR 25.0%
! TTCAGAGAACTTAATTTCTT+CGG + chr3_1:82102621-82102640 None:intergenic 25.0%
!!! AGACTTTTGTTATAAAACCT+AGG + chr3_1:82102682-82102701 None:intergenic 25.0%
!! AAAGCTTGTTTAGAACAATA+TGG - chr3_1:82102816-82102835 Msa0380440:three_prime_UTR 25.0%
! ATCAACTGAATTATCAATCT+AGG - chr3_1:82103104-82103123 Msa0380440:intron 25.0%
! TTTATGAGATCCTGAAATAT+TGG + chr3_1:82103241-82103260 None:intergenic 25.0%
! CATAATTCAAACGTTTCTTA+GGG + chr3_1:82103356-82103375 None:intergenic 25.0%
!! TTTCTAGCAAAATATTGTAC+AGG + chr3_1:82103494-82103513 None:intergenic 25.0%
!! CAATATTTTGCTAGAAAGTA+CGG - chr3_1:82103497-82103516 Msa0380440:intron 25.0%
! AACACATCTTAAATCAAAAG+AGG - chr3_1:82103635-82103654 Msa0380440:intron 25.0%
! ATAGTTAAATGGTTGATTAC+TGG + chr3_1:82103785-82103804 None:intergenic 25.0%
!!! ACCATTTAACTATTTTTCGT+TGG - chr3_1:82103792-82103811 Msa0380440:intron 25.0%
!!! CCATTTAACTATTTTTCGTT+GGG - chr3_1:82103793-82103812 Msa0380440:intron 25.0%
! AAGATAAAGATAATACTCAC+TGG + chr3_1:82103963-82103982 None:intergenic 25.0%
! AATGAAAATATTTCCATGCA+TGG + chr3_1:82104003-82104022 None:intergenic 25.0%
!! TTGGCAATTTTCAAATAAAC+AGG + chr3_1:82104027-82104046 None:intergenic 25.0%
! CACAAATTTGAACAAGATTA+GGG + chr3_1:82104647-82104666 None:intergenic 25.0%
! TCAGAAAAATGAATATCACA+TGG + chr3_1:82104688-82104707 None:intergenic 25.0%
! AGCTAACTTCAATATTTGAT+GGG + chr3_1:82105019-82105038 None:intergenic 25.0%
! AAGCTAACTTCAATATTTGA+TGG + chr3_1:82105020-82105039 None:intergenic 25.0%
!! TATTGAAGTTAGCTTATTAC+AGG - chr3_1:82105025-82105044 Msa0380440:five_prime_UTR 25.0%
! CTTGAATAATGAAGAAAATG+TGG + chr3_1:82105088-82105107 None:intergenic 25.0%
!!! AAGGTTATTTTCAGTATACT+AGG - chr3_1:82105118-82105137 Msa0380440:five_prime_UTR 25.0%
!!! ATTATTTTTTTTGTACGTGG+TGG - chr3_1:82105186-82105205 Msa0380440:five_prime_UTR 25.0%
! AGATAATGATGTTTAAATGG+AGG - chr3_1:82105255-82105274 Msa0380440:five_prime_UTR 25.0%
! GATAATGATGTTTAAATGGA+GGG - chr3_1:82105256-82105275 Msa0380440:five_prime_UTR 25.0%
AAATGAAGTTTGTACGGTAT+TGG - chr3_1:82101421-82101440 Msa0380440:three_prime_UTR 30.0%
! TTTTCAATTAAGAAGGGTGA+AGG - chr3_1:82101461-82101480 Msa0380440:three_prime_UTR 30.0%
TTAGTTAATTGTTCGGAGAA+AGG - chr3_1:82101702-82101721 Msa0380440:three_prime_UTR 30.0%
!!! GTGTCTTGTAATTGTTGTTT+TGG + chr3_1:82101916-82101935 None:intergenic 30.0%
! GAGCATCAAATTTGAAATCA+AGG + chr3_1:82101968-82101987 None:intergenic 30.0%
TGAAGATGTTCCATTATATC+TGG + chr3_1:82102305-82102324 None:intergenic 30.0%
GAAGAAATTAAGTTCTCTGA+AGG - chr3_1:82102620-82102639 Msa0380440:intron 30.0%
!! TATAAAACCTAGGTTCTAAG+TGG + chr3_1:82102672-82102691 None:intergenic 30.0%
ATAACAAAAGTCTACTATCG+CGG - chr3_1:82102689-82102708 Msa0380440:intron 30.0%
CGATAAATATTGGGTGATTT+AGG + chr3_1:82102888-82102907 None:intergenic 30.0%
! TGTAACATTCTTTCCTTTTC+TGG + chr3_1:82102990-82103009 None:intergenic 30.0%
ATAACTGTTCATTTGATCAC+AGG - chr3_1:82103021-82103040 Msa0380440:intron 30.0%
CCATAATTCAAACGTTTCTT+AGG + chr3_1:82103357-82103376 None:intergenic 30.0%
CCTAAGAAACGTTTGAATTA+TGG - chr3_1:82103354-82103373 Msa0380440:CDS 30.0%
ATCAGTTGCTAAGAATTATC+AGG - chr3_1:82103425-82103444 Msa0380440:CDS 30.0%
TCAGTTGCTAAGAATTATCA+GGG - chr3_1:82103426-82103445 Msa0380440:CDS 30.0%
TTTCAAATTATATCCGTGTG+TGG + chr3_1:82103538-82103557 None:intergenic 30.0%
CATGTTGAATATCACAAGAA+TGG + chr3_1:82103725-82103744 None:intergenic 30.0%
CATTCTTGTGATATTCAACA+TGG - chr3_1:82103723-82103742 Msa0380440:intron 30.0%
CCCAACGAAAAATAGTTAAA+TGG + chr3_1:82103796-82103815 None:intergenic 30.0%
! CTCTATGAGCTTCTATTTTA+CGG + chr3_1:82104075-82104094 None:intergenic 30.0%
!! ATGTTGGTTCAACAAAAACA+AGG - chr3_1:82104139-82104158 Msa0380440:CDS 30.0%
TCGTTGAACAATCATCAATT+AGG - chr3_1:82104215-82104234 Msa0380440:CDS 30.0%
ACTATCTATAAAGTGGTACA+CGG - chr3_1:82104343-82104362 Msa0380440:CDS 30.0%
AAACAGTTGTACAGTGAAAA+TGG - chr3_1:82104479-82104498 Msa0380440:CDS 30.0%
GCACAAATTTGAACAAGATT+AGG + chr3_1:82104648-82104667 None:intergenic 30.0%
CATTAAGCAGTTCATGAAAA+AGG - chr3_1:82104777-82104796 Msa0380440:CDS 30.0%
! GATTAAATGGAGATTTGGTA+TGG - chr3_1:82104846-82104865 Msa0380440:intron 30.0%
! AAATTGAGTCATGTGCTTTT+AGG - chr3_1:82104938-82104957 Msa0380440:CDS 30.0%
GAATAATGAAGAAAATGTGG+AGG + chr3_1:82105085-82105104 None:intergenic 30.0%
!!! CAATTTTTAAGGCTCTTTTC+TGG + chr3_1:82105219-82105238 None:intergenic 30.0%
CAGAAAAGAGCCTTAAAAAT+TGG - chr3_1:82105217-82105236 Msa0380440:five_prime_UTR 30.0%
AGGAAGGTAAAATTAGACAG+AGG - chr3_1:82101481-82101500 Msa0380440:three_prime_UTR 35.0%
GGTAAAATTAGACAGAGGTA+AGG - chr3_1:82101486-82101505 Msa0380440:three_prime_UTR 35.0%
AGATGAGATGAGATTAGATG+AGG + chr3_1:82101563-82101582 None:intergenic 35.0%
TTCCCATTCGGATAAGAAAA+GGG + chr3_1:82101588-82101607 None:intergenic 35.0%
! TTTTCTTATCCGAATGGGAA+GGG - chr3_1:82101588-82101607 Msa0380440:three_prime_UTR 35.0%
! GAAAGAGATGATGATGATGA+TGG + chr3_1:82101802-82101821 None:intergenic 35.0%
AAGAAGTGATTCTACAGATG+AGG + chr3_1:82102054-82102073 None:intergenic 35.0%
! TGGTTGTTGATTATGTTGTG+GGG + chr3_1:82102183-82102202 None:intergenic 35.0%
! GTGGTTGTTGATTATGTTGT+GGG + chr3_1:82102184-82102203 None:intergenic 35.0%
TTAAAGTCATCCTCTTGGTT+GGG + chr3_1:82102335-82102354 None:intergenic 35.0%
ATTAAAGTCATCCTCTTGGT+TGG + chr3_1:82102336-82102355 None:intergenic 35.0%
CATCATTAAAGTCATCCTCT+TGG + chr3_1:82102340-82102359 None:intergenic 35.0%
ACTAGTATAGATGCAAGATC+CGG - chr3_1:82102413-82102432 Msa0380440:intron 35.0%
!!! TTCTGGCTTTTCTTTCTGTT+TGG + chr3_1:82102442-82102461 None:intergenic 35.0%
GTTGTTCTTAAGTAACGCAA+TGG + chr3_1:82102569-82102588 None:intergenic 35.0%
GAACAACAACTAGAACTACA+AGG - chr3_1:82102582-82102601 Msa0380440:intron 35.0%
GAGAACTTAATTTCTTCGGA+TGG + chr3_1:82102617-82102636 None:intergenic 35.0%
! TAAGTTCTCTGAAGGAATAC+AGG - chr3_1:82102628-82102647 Msa0380440:intron 35.0%
! ATCAAGAGCATATGAGAGAA+TGG + chr3_1:82102853-82102872 None:intergenic 35.0%
ATATATCTCAGTGCCAGAAA+AGG - chr3_1:82102974-82102993 Msa0380440:intron 35.0%
AAAGCTCGAAAAACTTCAAG+AGG - chr3_1:82103258-82103277 Msa0380440:three_prime_UTR 35.0%
CTAAGAATTATCAGGGATCT+GGG - chr3_1:82103433-82103452 Msa0380440:CDS 35.0%
TGTACAGGTGAAAATATACC+TGG + chr3_1:82103479-82103498 None:intergenic 35.0%
! TAGAAAGTACGGACACTAAA+GGG - chr3_1:82103508-82103527 Msa0380440:intron 35.0%
TTAGTATGAGTCATTGCACT+TGG - chr3_1:82103674-82103693 Msa0380440:intron 35.0%
!! ACTATTTTTCGTTGGGTTAC+AGG - chr3_1:82103800-82103819 Msa0380440:intron 35.0%
! AGAGAAGTATGATGCTTCTA+AGG - chr3_1:82103851-82103870 Msa0380440:intron 35.0%
! GAGAAGTATGATGCTTCTAA+GGG - chr3_1:82103852-82103871 Msa0380440:intron 35.0%
TTTAATCCACCAATGAGCAT+AGG + chr3_1:82103892-82103911 None:intergenic 35.0%
AATCACTTTCTGTTCAGTCA+AGG - chr3_1:82103925-82103944 Msa0380440:intron 35.0%
TATTTCTTTCTGACCATGCA+TGG - chr3_1:82103987-82104006 Msa0380440:intron 35.0%
! AGAAGTCATTGTTGGAGTTT+TGG + chr3_1:82104046-82104065 None:intergenic 35.0%
! TGAGCTTCTATTTTACGGAA+TGG + chr3_1:82104070-82104089 None:intergenic 35.0%
TTGTTGAACCAACATCAATC+AGG + chr3_1:82104134-82104153 None:intergenic 35.0%
ATGATTGTTCAACGAGAACA+GGG + chr3_1:82104210-82104229 None:intergenic 35.0%
ACCACTTTATAGATAGTCCA+CGG + chr3_1:82104340-82104359 None:intergenic 35.0%
!! ACTTTCTGTTCTAGAGATCT+GGG + chr3_1:82104590-82104609 None:intergenic 35.0%
!! AACTTTCTGTTCTAGAGATC+TGG + chr3_1:82104591-82104610 None:intergenic 35.0%
!! AGATCTCTAGAACAGAAAGT+TGG - chr3_1:82104590-82104609 Msa0380440:CDS 35.0%
!! GATCTCTAGAACAGAAAGTT+GGG - chr3_1:82104591-82104610 Msa0380440:CDS 35.0%
! AGACTGAAAGTTTAAGACTC+TGG + chr3_1:82104622-82104641 None:intergenic 35.0%
CTTGTTCAAATTTGTGCTTC+AGG - chr3_1:82104651-82104670 Msa0380440:CDS 35.0%
! TTAATCACCTGTTTCTCTCT+AGG + chr3_1:82104832-82104851 None:intergenic 35.0%
GAGAGAAACAGGTGATTAAA+TGG - chr3_1:82104833-82104852 Msa0380440:intron 35.0%
CAGGTGATTAAATGGAGATT+TGG - chr3_1:82104841-82104860 Msa0380440:intron 35.0%
AAAATACTGCTGCAAATGCT+TGG + chr3_1:82104986-82105005 None:intergenic 35.0%
CAATTAAGAAGGGTGAAGGA+AGG - chr3_1:82101465-82101484 Msa0380440:three_prime_UTR 40.0%
! TCACCCTTTTCTTATCCGAA+TGG - chr3_1:82101582-82101601 Msa0380440:three_prime_UTR 40.0%
! CACCCTTTTCTTATCCGAAT+GGG - chr3_1:82101583-82101602 Msa0380440:three_prime_UTR 40.0%
CTTCCCATTCGGATAAGAAA+AGG + chr3_1:82101589-82101608 None:intergenic 40.0%
! CTTTTCTTATCCGAATGGGA+AGG - chr3_1:82101587-82101606 Msa0380440:three_prime_UTR 40.0%
TTTCTTATCCGAATGGGAAG+GGG - chr3_1:82101589-82101608 Msa0380440:three_prime_UTR 40.0%
TGTTCGGAGAAAGGATAATG+TGG - chr3_1:82101711-82101730 Msa0380440:three_prime_UTR 40.0%
!! AGAGATGATGATGATGATGG+CGG + chr3_1:82101799-82101818 None:intergenic 40.0%
AATCTGAAAACTCACCACCT+TGG - chr3_1:82101997-82102016 Msa0380440:intron 40.0%
AAGTGATTCTACAGATGAGG+AGG + chr3_1:82102051-82102070 None:intergenic 40.0%
TGAAGCTCTTACTCTTGCTA+AGG - chr3_1:82102109-82102128 Msa0380440:three_prime_UTR 40.0%
! GTTGTTGATTATGTTGTGGG+GGG + chr3_1:82102181-82102200 None:intergenic 40.0%
! GGTTGTTGATTATGTTGTGG+GGG + chr3_1:82102182-82102201 None:intergenic 40.0%
! GGTGGTTGTTGATTATGTTG+TGG + chr3_1:82102185-82102204 None:intergenic 40.0%
!! AGTAAATTTTCAGGGGTGGA+AGG + chr3_1:82102215-82102234 None:intergenic 40.0%
!! GAGAAGTAAATTTTCAGGGG+TGG + chr3_1:82102219-82102238 None:intergenic 40.0%
! TCTCAAATGGGTTCAACACA+TGG - chr3_1:82102235-82102254 Msa0380440:three_prime_UTR 40.0%
TAAAGTCATCCTCTTGGTTG+GGG + chr3_1:82102334-82102353 None:intergenic 40.0%
! TACATCTTCAAGTTCCTCAG+AGG + chr3_1:82102375-82102394 None:intergenic 40.0%
TGAGGAACTTGAAGATGTAG+AGG - chr3_1:82102376-82102395 Msa0380440:intron 40.0%
! TGGCTTTTCTTTCTGTTTGG+CGG + chr3_1:82102439-82102458 None:intergenic 40.0%
TGCATTACCACTTAGAACCT+AGG - chr3_1:82102662-82102681 Msa0380440:intron 40.0%
AAGAACTGCAGTCTCAATGT+TGG + chr3_1:82102741-82102760 None:intergenic 40.0%
TACCACAATCGTTAGTGTGA+CGG - chr3_1:82102786-82102805 Msa0380440:three_prime_UTR 40.0%
GGAGAAGAGGCAAATGAATT+AGG + chr3_1:82103216-82103235 None:intergenic 40.0%
TGAAATATTGGCAGGAGAAG+AGG + chr3_1:82103229-82103248 None:intergenic 40.0%
TCTTCTCCTGCCAATATTTC+AGG - chr3_1:82103228-82103247 Msa0380440:intron 40.0%
TGAGATCCTGAAATATTGGC+AGG + chr3_1:82103237-82103256 None:intergenic 40.0%
!! ATTTGCTCAATGGGCTACAA+TGG - chr3_1:82103312-82103331 Msa0380440:three_prime_UTR 40.0%
GCTAAGAATTATCAGGGATC+TGG - chr3_1:82103432-82103451 Msa0380440:CDS 40.0%
! CTAGAAAGTACGGACACTAA+AGG - chr3_1:82103507-82103526 Msa0380440:intron 40.0%
! AGAAAGTACGGACACTAAAG+GGG - chr3_1:82103509-82103528 Msa0380440:intron 40.0%
AAGAGTCCACACTTCTTCAA+TGG - chr3_1:82103757-82103776 Msa0380440:intron 40.0%
! TTTTTCGTTGGGTTACAGGA+AGG - chr3_1:82103804-82103823 Msa0380440:intron 40.0%
AGTTCTCAACCTATGCTCAT+TGG - chr3_1:82103880-82103899 Msa0380440:intron 40.0%
!! TGCTCATTGGTGGATTAAAC+AGG - chr3_1:82103893-82103912 Msa0380440:intron 40.0%
GACATTGACCTGATTGATGT+TGG - chr3_1:82104123-82104142 Msa0380440:CDS 40.0%
TGATTGTTCAACGAGAACAG+GGG + chr3_1:82104209-82104228 None:intergenic 40.0%
GATGATTGTTCAACGAGAAC+AGG + chr3_1:82104211-82104230 None:intergenic 40.0%
ACAATCAACGAATGTTGACG+CGG + chr3_1:82104290-82104309 None:intergenic 40.0%
ATAAGTACACCAATTCACCG+TGG - chr3_1:82104320-82104339 Msa0380440:CDS 40.0%
ATAGATAGTCCACGGTGAAT+TGG + chr3_1:82104332-82104351 None:intergenic 40.0%
! ACCGTGGACTATCTATAAAG+TGG - chr3_1:82104336-82104355 Msa0380440:CDS 40.0%
! TTTGGCTTAACAGTTCCACA+TGG - chr3_1:82104424-82104443 Msa0380440:CDS 40.0%
CTGCTTAATGAGCTGTTCTT+CGG + chr3_1:82104767-82104786 None:intergenic 40.0%
CATGAAAAAGGACCTGGAAA+AGG - chr3_1:82104789-82104808 Msa0380440:CDS 40.0%
! AAAGGACCTGGAAAAGGTAT+TGG - chr3_1:82104795-82104814 Msa0380440:intron 40.0%
TCTCAATCCTAGAGAGAAAC+AGG - chr3_1:82104822-82104841 Msa0380440:intron 40.0%
! TGGAGATTTGGTATGGATGA+TGG - chr3_1:82104853-82104872 Msa0380440:intron 40.0%
!! GATTTGGTATGGATGATGGA+AGG - chr3_1:82104857-82104876 Msa0380440:intron 40.0%
ATGAAGACACTGCAAGAGAT+TGG - chr3_1:82104880-82104899 Msa0380440:intron 40.0%
TGAAGACACTGCAAGAGATT+GGG - chr3_1:82104881-82104900 Msa0380440:intron 40.0%
CAAGAGATTGGGGAAATGAT+GGG - chr3_1:82104892-82104911 Msa0380440:intron 40.0%
!! GGAAATGATGGGTGTAAGTA+GGG - chr3_1:82104903-82104922 Msa0380440:CDS 40.0%
AGGTAAGGAATTGAGTGACG+AGG - chr3_1:82101501-82101520 Msa0380440:three_prime_UTR 45.0%
TTCTTATCCGAATGGGAAGG+GGG - chr3_1:82101590-82101609 Msa0380440:three_prime_UTR 45.0%
CGCTTCTTCTCTTCTCTTCT+GGG + chr3_1:82101639-82101658 None:intergenic 45.0%
ACGCTTCTTCTCTTCTCTTC+TGG + chr3_1:82101640-82101659 None:intergenic 45.0%
TCTGGGTTGCAGATGAATTG+TGG + chr3_1:82101761-82101780 None:intergenic 45.0%
!! ATGATGATGATGATGGCGGT+GGG + chr3_1:82101795-82101814 None:intergenic 45.0%
! GAGTTTTCAGATTCAGCAGG+AGG + chr3_1:82101990-82102009 None:intergenic 45.0%
! GGTGAGTTTTCAGATTCAGC+AGG + chr3_1:82101993-82102012 None:intergenic 45.0%
TGATTCTACAGATGAGGAGG+AGG + chr3_1:82102048-82102067 None:intergenic 45.0%
GGCAATGGATACAGCATCTT+CGG + chr3_1:82102267-82102286 None:intergenic 45.0%
ACCAGCAGGACCAGATATAA+TGG - chr3_1:82102292-82102311 Msa0380440:intron 45.0%
TCCATTATATCTGGTCCTGC+TGG + chr3_1:82102296-82102315 None:intergenic 45.0%
! TCTTCAAGTTCCTCAGAGGT+AGG + chr3_1:82102371-82102390 None:intergenic 45.0%
! TTTTCTTTCTGTTTGGCGGC+CGG + chr3_1:82102435-82102454 None:intergenic 45.0%
CTTGAAGGAGACGATGTTTG+TGG + chr3_1:82102489-82102508 None:intergenic 45.0%
AACATCGTCTCCTTCAAGTC+TGG - chr3_1:82102491-82102510 Msa0380440:intron 45.0%
!!! TGTACGAACACGCTTTTTCC+TGG + chr3_1:82102525-82102544 None:intergenic 45.0%
AAAGCGTGTTCGTACACAAG+AGG - chr3_1:82102529-82102548 Msa0380440:intron 45.0%
GAGGACCTTGCAGAAAAATG+TGG - chr3_1:82103277-82103296 Msa0380440:three_prime_UTR 45.0%
GACCTTGCAGAAAAATGTGG+CGG - chr3_1:82103280-82103299 Msa0380440:three_prime_UTR 45.0%
GTAGCCCATTGAGCAAATGT+GGG + chr3_1:82103310-82103329 None:intergenic 45.0%
TGTAGCCCATTGAGCAAATG+TGG + chr3_1:82103311-82103330 None:intergenic 45.0%
! GAAAGTACGGACACTAAAGG+GGG - chr3_1:82103510-82103529 Msa0380440:intron 45.0%
CTGGAACCATTGAAGAAGTG+TGG + chr3_1:82103766-82103785 None:intergenic 45.0%
TCTCAACCTATGCTCATTGG+TGG - chr3_1:82103883-82103902 Msa0380440:intron 45.0%
!! GGTGGATTAAACAGGCAGTT+CGG - chr3_1:82103901-82103920 Msa0380440:intron 45.0%
GGAATGGCAGAAGTCATTGT+TGG + chr3_1:82104054-82104073 None:intergenic 45.0%
GATTGTTCAACGAGAACAGG+GGG + chr3_1:82104208-82104227 None:intergenic 45.0%
! AGGAGACCATGAGCTTCTTT+TGG - chr3_1:82104261-82104280 Msa0380440:CDS 45.0%
! GGAGACCATGAGCTTCTTTT+GGG - chr3_1:82104262-82104281 Msa0380440:CDS 45.0%
! GAGACCATGAGCTTCTTTTG+GGG - chr3_1:82104263-82104282 Msa0380440:CDS 45.0%
! AGACCATGAGCTTCTTTTGG+GGG - chr3_1:82104264-82104283 Msa0380440:CDS 45.0%
GCTTAACAGTTCCACATGGT+GGG - chr3_1:82104428-82104447 Msa0380440:CDS 45.0%
CTTAACAGTTCCACATGGTG+GGG - chr3_1:82104429-82104448 Msa0380440:CDS 45.0%
TTAACAGTTCCACATGGTGG+GGG - chr3_1:82104430-82104449 Msa0380440:CDS 45.0%
GGCAACTTACAAAGTGAAGG+AGG - chr3_1:82104451-82104470 Msa0380440:CDS 45.0%
AAGAAGTTGCCGAAGCAACT+GGG - chr3_1:82104519-82104538 Msa0380440:CDS 45.0%
! TAGAGATCTGGGAGCTTTTG+GGG + chr3_1:82104579-82104598 None:intergenic 45.0%
! CTAGAGATCTGGGAGCTTTT+GGG + chr3_1:82104580-82104599 None:intergenic 45.0%
! TCTAGAGATCTGGGAGCTTT+TGG + chr3_1:82104581-82104600 None:intergenic 45.0%
GCAGTTCATGAAAAAGGACC+TGG - chr3_1:82104783-82104802 Msa0380440:CDS 45.0%
! GACTGTCCAATACCTTTTCC+AGG + chr3_1:82104804-82104823 None:intergenic 45.0%
GAAGACACTGCAAGAGATTG+GGG - chr3_1:82104882-82104901 Msa0380440:intron 45.0%
GCAAGAGATTGGGGAAATGA+TGG - chr3_1:82104891-82104910 Msa0380440:intron 45.0%
!! GGGAAATGATGGGTGTAAGT+AGG - chr3_1:82104902-82104921 Msa0380440:CDS 45.0%
TCTTATCCGAATGGGAAGGG+GGG - chr3_1:82101591-82101610 Msa0380440:three_prime_UTR 50.0%
!! GATGATGATGATGATGGCGG+TGG + chr3_1:82101796-82101815 None:intergenic 50.0%
GAGTTTGCCTGAGCGACATA+GGG + chr3_1:82102023-82102042 None:intergenic 50.0%
TTCTACAGATGAGGAGGAGG+AGG + chr3_1:82102045-82102064 None:intergenic 50.0%
GATGCTGTATCCATTGCCAC+TGG - chr3_1:82102269-82102288 Msa0380440:intron 50.0%
TCACATTAGCCCCAACCAAG+AGG - chr3_1:82102322-82102341 Msa0380440:intron 50.0%
CCAGAAGAGTCAGAGCTTCT+GGG - chr3_1:82102456-82102475 Msa0380440:intron 50.0%
! AAGAGTCAGAGCTTCTGGGA+AGG - chr3_1:82102460-82102479 Msa0380440:intron 50.0%
!!! AACACGCTTTTTCCTGGTGG+TGG + chr3_1:82102519-82102538 None:intergenic 50.0%
!!! ACGAACACGCTTTTTCCTGG+TGG + chr3_1:82102522-82102541 None:intergenic 50.0%
AGTCTACTATCGCGGCATCA+TGG - chr3_1:82102697-82102716 Msa0380440:intron 50.0%
TGCCGTCACACTAACGATTG+TGG + chr3_1:82102791-82102810 None:intergenic 50.0%
CCAGCCCACATTTGCTCAAT+GGG - chr3_1:82103303-82103322 Msa0380440:three_prime_UTR 50.0%
!! CTCAATGGGCTACAATGGCA+GGG - chr3_1:82103317-82103336 Msa0380440:three_prime_UTR 50.0%
!! TCAATGGGCTACAATGGCAG+GGG - chr3_1:82103318-82103337 Msa0380440:three_prime_UTR 50.0%
TGGGATGAGTCTGCAAGATC+TGG - chr3_1:82103452-82103471 Msa0380440:CDS 50.0%
AATGAGGATGAGGAGGACTG+CGG + chr3_1:82104098-82104117 None:intergenic 50.0%
TCCTCCTCATCCTCATTGGT+GGG - chr3_1:82104101-82104120 Msa0380440:CDS 50.0%
ATGTCCCACCAATGAGGATG+AGG + chr3_1:82104108-82104127 None:intergenic 50.0%
AGGTCAATGTCCCACCAATG+AGG + chr3_1:82104114-82104133 None:intergenic 50.0%
GGCTTAACAGTTCCACATGG+TGG - chr3_1:82104427-82104446 Msa0380440:CDS 50.0%
GGGGGCAACTTACAAAGTGA+AGG - chr3_1:82104448-82104467 Msa0380440:CDS 50.0%
TCGGCAACTTCTTCATCGTC+AGG + chr3_1:82104512-82104531 None:intergenic 50.0%
GAAGAAGTTGCCGAAGCAAC+TGG - chr3_1:82104518-82104537 Msa0380440:CDS 50.0%
!!! TGGGAGCTTTTGGGGTCAAA+AGG + chr3_1:82104571-82104590 None:intergenic 50.0%
ATTGGTGTGCGTTTCTGACC+AGG - chr3_1:82104711-82104730 Msa0380440:CDS 50.0%
CAGGATCAGCAAGTACTTCC+TGG + chr3_1:82104732-82104751 None:intergenic 50.0%
! TCTTCGGCTGTTTCAGCTTC+AGG + chr3_1:82104751-82104770 None:intergenic 50.0%
CTTATCCGAATGGGAAGGGG+GGG - chr3_1:82101592-82101611 Msa0380440:three_prime_UTR 55.0%
AACATCCCCCCCTTCCCATT+CGG + chr3_1:82101600-82101619 None:intergenic 55.0%
GGTGGGTAGGGATTCTGTCT+GGG + chr3_1:82101778-82101797 None:intergenic 55.0%
!! GATGATGATGGCGGTGGGTA+GGG + chr3_1:82101790-82101809 None:intergenic 55.0%
!! TGATGATGATGGCGGTGGGT+AGG + chr3_1:82101791-82101810 None:intergenic 55.0%
GGAGTTTGCCTGAGCGACAT+AGG + chr3_1:82102024-82102043 None:intergenic 55.0%
GGCTGCTGCAAAGCTTGCAA+AGG - chr3_1:82102130-82102149 Msa0380440:three_prime_UTR 55.0%
TCAGGGGTGGAAGGAAGTTG+CGG + chr3_1:82102206-82102225 None:intergenic 55.0%
GCCAGAAGAGTCAGAGCTTC+TGG - chr3_1:82102455-82102474 Msa0380440:intron 55.0%
! CCCAGAAGCTCTGACTCTTC+TGG + chr3_1:82102459-82102478 None:intergenic 55.0%
!! GGTGGTGGAACCAGACTTGA+AGG + chr3_1:82102504-82102523 None:intergenic 55.0%
! TCAAGTCTGGTTCCACCACC+AGG - chr3_1:82102504-82102523 Msa0380440:intron 55.0%
! GGCCGCCACATTTTTCTGCA+AGG + chr3_1:82103285-82103304 None:intergenic 55.0%
GCCAGCCCACATTTGCTCAA+TGG - chr3_1:82103302-82103321 Msa0380440:three_prime_UTR 55.0%
CCCATTGAGCAAATGTGGGC+TGG + chr3_1:82103306-82103325 None:intergenic 55.0%
!! GCTCAATGGGCTACAATGGC+AGG - chr3_1:82103316-82103335 Msa0380440:three_prime_UTR 55.0%
GAGTCTGCAAGATCTGGTCC+AGG - chr3_1:82103458-82103477 Msa0380440:intron 55.0%
!! ACTAAAGGGGGCACCACACA+CGG - chr3_1:82103522-82103541 Msa0380440:intron 55.0%
GCAGTCCTCCTCATCCTCAT+TGG - chr3_1:82104097-82104116 Msa0380440:CDS 55.0%
GTCCTCCTCATCCTCATTGG+TGG - chr3_1:82104100-82104119 Msa0380440:CDS 55.0%
TCCCACCAATGAGGATGAGG+AGG + chr3_1:82104105-82104124 None:intergenic 55.0%
AGGTCACCATCTCAGTCGTG+CGG - chr3_1:82104235-82104254 Msa0380440:CDS 55.0%
TGTAAGTTGCCCCCACCATG+TGG + chr3_1:82104442-82104461 None:intergenic 55.0%
CATCGACAGCCCAGTTGCTT+CGG + chr3_1:82104531-82104550 None:intergenic 55.0%
CAACTGGGCTGTCGATGAAG+AGG - chr3_1:82104534-82104553 Msa0380440:CDS 55.0%
CGGTGGGTAGGGATTCTGTC+TGG + chr3_1:82101779-82101798 None:intergenic 60.0%
TGAGCGACATAGGGCCAAGG+TGG + chr3_1:82102014-82102033 None:intergenic 60.0%
ACCTTGGCCCTATGTCGCTC+AGG - chr3_1:82102013-82102032 Msa0380440:intron 60.0%
TCCATTGCCACTGGACCAGC+AGG - chr3_1:82102278-82102297 Msa0380440:intron 60.0%
TCCTGCTGGTCCAGTGGCAA+TGG + chr3_1:82102282-82102301 None:intergenic 60.0%
ATCTGGTCCTGCTGGTCCAG+TGG + chr3_1:82102288-82102307 None:intergenic 60.0%
TGTCGACGAGCCTACCTCTG+AGG - chr3_1:82102358-82102377 Msa0380440:intron 60.0%
GGGTTACAGGAAGGATGCCG+CGG - chr3_1:82103813-82103832 Msa0380440:intron 60.0%
GGTTACAGGAAGGATGCCGC+GGG - chr3_1:82103814-82103833 Msa0380440:intron 60.0%
CTGCACCTCTTACAAGCCCG+CGG + chr3_1:82103833-82103852 None:intergenic 60.0%
CCTCATCCGCACGACTGAGA+TGG + chr3_1:82104244-82104263 None:intergenic 60.0%
CCATCTCAGTCGTGCGGATG+AGG - chr3_1:82104241-82104260 Msa0380440:CDS 60.0%
CGGCCCCCAAAAGAAGCTCA+TGG + chr3_1:82104270-82104289 None:intergenic 60.0%
GCCTGAGCGACATAGGGCCA+AGG + chr3_1:82102017-82102036 None:intergenic 65.0%
GGGGTGGAAGGAAGTTGCGG+TGG + chr3_1:82102203-82102222 None:intergenic 65.0%
GGATGCCGCGGGCTTGTAAG+AGG - chr3_1:82103825-82103844 Msa0380440:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82101418 82105305 82101418 ID=Msa0380440;Name=Msa0380440
chr3_1 mRNA 82101418 82105305 82101418 ID=Msa0380440-mRNA-1;Parent=Msa0380440;Name=Msa0380440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=310|0.71|0.62|1|0.71|0.5|8|1025|316
chr3_1 exon 82101418 82101990 82101418 ID=Msa0380440-mRNA-1:exon:20957;Parent=Msa0380440-mRNA-1
chr3_1 exon 82102086 82102286 82102086 ID=Msa0380440-mRNA-1:exon:20956;Parent=Msa0380440-mRNA-1
chr3_1 exon 82102761 82102901 82102761 ID=Msa0380440-mRNA-1:exon:20955;Parent=Msa0380440-mRNA-1
chr3_1 exon 82103244 82103473 82103244 ID=Msa0380440-mRNA-1:exon:20954;Parent=Msa0380440-mRNA-1
chr3_1 exon 82104074 82104300 82104074 ID=Msa0380440-mRNA-1:exon:20953;Parent=Msa0380440-mRNA-1
chr3_1 exon 82104307 82104639 82104307 ID=Msa0380440-mRNA-1:exon:20952;Parent=Msa0380440-mRNA-1
chr3_1 exon 82104646 82104813 82104646 ID=Msa0380440-mRNA-1:exon:20951;Parent=Msa0380440-mRNA-1
chr3_1 exon 82104893 82105305 82104893 ID=Msa0380440-mRNA-1:exon:20950;Parent=Msa0380440-mRNA-1
chr3_1 five_prime_UTR 82104996 82105305 82104996 ID=Msa0380440-mRNA-1:five_prime_utr;Parent=Msa0380440-mRNA-1
chr3_1 CDS 82104893 82104995 82104893 ID=Msa0380440-mRNA-1:cds;Parent=Msa0380440-mRNA-1
chr3_1 CDS 82104646 82104813 82104646 ID=Msa0380440-mRNA-1:cds;Parent=Msa0380440-mRNA-1
chr3_1 CDS 82104307 82104639 82104307 ID=Msa0380440-mRNA-1:cds;Parent=Msa0380440-mRNA-1
chr3_1 CDS 82104074 82104300 82104074 ID=Msa0380440-mRNA-1:cds;Parent=Msa0380440-mRNA-1
chr3_1 CDS 82103354 82103473 82103354 ID=Msa0380440-mRNA-1:cds;Parent=Msa0380440-mRNA-1
chr3_1 three_prime_UTR 82103244 82103353 82103244 ID=Msa0380440-mRNA-1:three_prime_utr;Parent=Msa0380440-mRNA-1
chr3_1 three_prime_UTR 82102761 82102901 82102761 ID=Msa0380440-mRNA-1:three_prime_utr;Parent=Msa0380440-mRNA-1
chr3_1 three_prime_UTR 82102086 82102286 82102086 ID=Msa0380440-mRNA-1:three_prime_utr;Parent=Msa0380440-mRNA-1
chr3_1 three_prime_UTR 82101418 82101990 82101418 ID=Msa0380440-mRNA-1:three_prime_utr;Parent=Msa0380440-mRNA-1
Gene Sequence

>Msa0380440

ATGTGGTCATCGTCGTCGTCGTGTTTATTGCCACAATTCATCTGCAACCCAGACAGAATCCCTACCCACCGCCATCATCATCATCATCTCTTTCTTCTTCAATCACCCAAAACAACAATTACAAGACACTGTATTTTGTCTTCTTCATCAACGGCACTCCTTGATTTCAAATTTGATGCTCCTCCTGCTGAATCTGAAAACTCACCACCTTGGCCCTATGTCGCTCAGGCAAACTCCTCCTCCTCCTCATCTGTAGAATCACTTCTTACTAACGCTGTTATAGCTGCTGCTGCTTCTGAAGCTCTTACTCTTGCTAAGGCTGCTGCAAAGCTTGCAAAGGATGCTACTCTCTTATTCAATAACAACCCCCCACAACATAATCAACAACCACCGCAACTTCCTTCCACCCCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGCAGCCGAAGATGCTGTATCCATTGCCACTGGACCAGCAGGACCAGATATAATGGAACATCTTCACATTAGCCCCAACCAAGAGGATGACTTTAATGATGTCGACGAGCCTACCTCTGAGGAACTTGAAGATGTAGAGGAACAACTTTTCGATACTAATGCAAGATCCGGCCGCCAAACAGAAAGAAAAGCCAGAAGAGTCAGAGCTTCTGGGAAGGCTGCCACAAACATCGTCTCCTTCAAGTCTGGTTCCACCACCAGGAAAAAGCGTGTTCGTACACAAGAGGTTGACTATTCTGATCCATTGCGTTACTTAAGAACAACAACTAGAACTACAAGGCTTCTCACTCCATCCGAAGAAATTAAGTTCTCTGAAGGAATACAGGATCTCATAAAGCTCGAAAAACTTCAAGAGGACCTTGCAGAAAAATGTGGCGGCCAGCCCACATTTGCTCAATGGGCTACAATGGCAGGGGTAGATCAAAAGACCCTAAGAAACGTTTGA

Protein sequence

>Msa0380440

MWSSSSSCLLPQFICNPDRIPTHRHHHHHLFLLQSPKTTITRHCILSSSSTALLDFKFDAPPAESENSPPWPYVAQANSSSSSSVESLLTNAVIAAAASEALTLAKAAAKLAKDATLLFNNNPPQHNQQPPQLPSTPENLLLKWVQHMEAAEDAVSIATGPAGPDIMEHLHISPNQEDDFNDVDEPTSEELEDVEEQLFDTNARSGRQTERKARRVRASGKAATNIVSFKSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTPSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRNV*