AlfalfaGEDB | Msa0573330

M. sativa cultivar zhongmu-4 / Msa0573330

KEGG: K01214
GO: GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0010021 GO:0010368 GO:0015980 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0032991 GO:0043033 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1902494 GO:2000896
PFAM: PF02922.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573330	XP_003630623.2	96.447	788	25	1	3	787	1	788	0.0	1590

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573330	sp\|O04196\|ISOA1_ARATH	77.537	739	163	2	48	783	41	779	0.0	1236

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573330	G7LIX1	96.447	788	25	1	3	787	1	788	0.0	1590

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0143360	Msa0573330	0.850146	2.050169e-60	-8.615850e-47
Msa0187820	Msa0573330	0.812599	3.910463e-51	-8.615850e-47
Msa0207530	Msa0573330	0.814208	1.731804e-51	-8.615850e-47
Msa0207900	Msa0573330	0.831605	1.518393e-55	-8.615850e-47
Msa0573330	Msa0587060	0.811198	7.893044e-51	-8.615850e-47
Msa0573330	Msa0598260	0.810277	1.248840e-50	-8.615850e-47
Msa0573330	Msa0626890	0.825000	5.948389e-54	-8.615850e-47
Msa0573330	Msa0637910	0.820055	8.397283e-53	-8.615850e-47
Msa0573330	Msa0708230	0.805571	1.252005e-49	-8.615850e-47
Msa0573330	Msa0782970	0.802309	5.963930e-49	-8.615850e-47

Showing 1 to 10 of 17 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573330	MtrunA17_Chr8g0389131	96.447	788	25	1	3	787	1	788	0.0	1590
Msa0573330	MtrunA17_Chr3g0132391	44.986	738	346	18	57	779	81	773	0.0	599
Msa0573330	MtrunA17_Chr7g0259581	32.902	696	368	24	75	747	202	821	3.13e-96	318
Msa0573330	MtrunA17_Chr1g0197251	27.211	294	152	12	171	423	295	567	1.45e-16	84.7
Msa0573330	MtrunA17_Chr7g0265941	26.840	231	131	10	195	419	306	504	1.32e-11	68.6

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573330	AT2G39930.1	77.537	739	163	2	48	783	41	779	0.0	1236
Msa0573330	AT2G39930.2	78.768	617	128	2	48	661	41	657	0.0	1050
Msa0573330	AT2G39930.3	77.758	562	122	2	48	606	41	602	0.0	942
Msa0573330	AT4G09020.1	44.823	763	360	18	34	779	43	761	0.0	609
Msa0573330	AT1G03310.2	30.423	733	398	22	74	779	228	875	1.58e-95	317
Msa0573330	AT1G03310.1	30.423	733	398	22	74	779	228	875	1.58e-95	317
Msa0573330	AT5G04360.1	22.821	631	367	23	77	635	204	786	3.01e-16	84.0
Msa0573330	AT5G04360.2	22.821	631	367	23	77	635	204	786	3.01e-16	84.0
Msa0573330	AT5G03650.1	30.603	232	121	11	195	419	258	456	4.25e-14	77.0
Msa0573330	AT2G36390.1	26.407	231	132	10	195	419	293	491	1.35e-11	68.9

Showing 1 to 10 of 10 entries

Previous1Next

Find 230 sgRNAs with CRISPR-Local

Find 689 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAACTCAGATGGACC+CGG	0.654746	4_1:-76459417	Msa0573330:intron
AAAGGAAAAGGGGAAGTGAG+TGG	0.620737	4_1:-76469652	None:intergenic
AAAGGCTACCCTTCACCCTA+CGG	0.576668	4_1:-76469232	Msa0573330:CDS
AAATCTGAAGAAGTCTGACG+AGG	0.720742	4_1:+76460612	None:intergenic
AAATTGACCCCGTCTTCTTG+AGG	0.573022	4_1:+76469202	None:intergenic
AACAAGCATAACTTGCCCAA+TGG	0.607580	4_1:-76462290	Msa0573330:CDS
AACACCGACACGATTCCCAA+CGG	0.668297	4_1:+76469306	None:intergenic
AACCTTGTATGTGCTCATGA+TGG	0.532079	4_1:-76462344	Msa0573330:CDS
AACTCAGATGGACCCGGTGA+AGG	0.541438	4_1:-76459411	Msa0573330:intron
AACTCCTCTAAAAGAAATAA+TGG	0.265535	4_1:+76466668	None:intergenic

Showing 1 to 10 of 230 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAATAAAACAGGATGTGTT+TGG	-	chr4_1:76459669-76459688	Msa0573330:intron	30.0%
GTAGTACATTATAGTTGAGA+TGG	-	chr4_1:76459848-76459867	Msa0573330:intron	30.0%
ATATATGAAATGCATGTGAG+AGG	-	chr4_1:76460307-76460326	Msa0573330:intron	30.0%
TATATGAAATGCATGTGAGA+GGG	-	chr4_1:76460308-76460327	Msa0573330:intron	30.0%
AAGATAATGTGTCCTCTAAA+AGG	-	chr4_1:76460514-76460533	Msa0573330:intron	30.0%
ATTCCTACATAAAGCAGATA+TGG	-	chr4_1:76461002-76461021	Msa0573330:intron	30.0%
AATCCATATCTGCTTTATGT+AGG	+	chr4_1:76461008-76461027	None:intergenic	30.0%
TACAGTTACAATGCTATTCA+GGG	-	chr4_1:76461130-76461149	Msa0573330:intron	30.0%
TAATTCTTATCCTTGACTTC+TGG	-	chr4_1:76461193-76461212	Msa0573330:intron	30.0%
GCATCAAATCATGAACTAAT+TGG	-	chr4_1:76461295-76461314	Msa0573330:intron	30.0%

Showing 1 to 10 of 689 entries

Previous1 2 3 4 5…69Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	76458996	76469670	76458996	ID=Msa0573330;Name=Msa0573330
chr4_1	mRNA	76458996	76469670	76458996	ID=Msa0573330-mRNA-1;Parent=Msa0573330;Name=Msa0573330-mRNA-1;_AED=0.09;_eAED=0.09;_QI=194\|1\|1\|1\|1\|1\|18\|167\|787
chr4_1	exon	76458996	76459426	76458996	ID=Msa0573330-mRNA-1:exon:26766;Parent=Msa0573330-mRNA-1
chr4_1	exon	76460399	76460516	76460399	ID=Msa0573330-mRNA-1:exon:26765;Parent=Msa0573330-mRNA-1
chr4_1	exon	76460586	76460668	76460586	ID=Msa0573330-mRNA-1:exon:26764;Parent=Msa0573330-mRNA-1
chr4_1	exon	76460753	76460833	76460753	ID=Msa0573330-mRNA-1:exon:26763;Parent=Msa0573330-mRNA-1
chr4_1	exon	76461485	76461568	76461485	ID=Msa0573330-mRNA-1:exon:26762;Parent=Msa0573330-mRNA-1
chr4_1	exon	76462238	76462393	76462238	ID=Msa0573330-mRNA-1:exon:26761;Parent=Msa0573330-mRNA-1
chr4_1	exon	76462671	76462763	76462671	ID=Msa0573330-mRNA-1:exon:26760;Parent=Msa0573330-mRNA-1
chr4_1	exon	76463691	76463777	76463691	ID=Msa0573330-mRNA-1:exon:26759;Parent=Msa0573330-mRNA-1
chr4_1	exon	76464809	76464935	76464809	ID=Msa0573330-mRNA-1:exon:26758;Parent=Msa0573330-mRNA-1
chr4_1	exon	76465026	76465097	76465026	ID=Msa0573330-mRNA-1:exon:26757;Parent=Msa0573330-mRNA-1
chr4_1	exon	76465776	76465861	76465776	ID=Msa0573330-mRNA-1:exon:26756;Parent=Msa0573330-mRNA-1
chr4_1	exon	76466635	76466742	76466635	ID=Msa0573330-mRNA-1:exon:26755;Parent=Msa0573330-mRNA-1
chr4_1	exon	76466839	76466980	76466839	ID=Msa0573330-mRNA-1:exon:26754;Parent=Msa0573330-mRNA-1
chr4_1	exon	76467505	76467596	76467505	ID=Msa0573330-mRNA-1:exon:26753;Parent=Msa0573330-mRNA-1
chr4_1	exon	76468258	76468410	76468258	ID=Msa0573330-mRNA-1:exon:26752;Parent=Msa0573330-mRNA-1
chr4_1	exon	76468514	76468606	76468514	ID=Msa0573330-mRNA-1:exon:26751;Parent=Msa0573330-mRNA-1
chr4_1	exon	76468852	76469034	76468852	ID=Msa0573330-mRNA-1:exon:26750;Parent=Msa0573330-mRNA-1
chr4_1	exon	76469135	76469670	76469135	ID=Msa0573330-mRNA-1:exon:26749;Parent=Msa0573330-mRNA-1
chr4_1	five_prime_UTR	76469477	76469670	76469477	ID=Msa0573330-mRNA-1:five_prime_utr;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76469135	76469476	76469135	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76468852	76469034	76468852	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76468514	76468606	76468514	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76468258	76468410	76468258	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76467505	76467596	76467505	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76466839	76466980	76466839	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76466635	76466742	76466635	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76465776	76465861	76465776	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76465026	76465097	76465026	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76464809	76464935	76464809	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76463691	76463777	76463691	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76462671	76462763	76462671	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76462238	76462393	76462238	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76461485	76461568	76461485	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76460753	76460833	76460753	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76460586	76460668	76460586	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76460399	76460516	76460399	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	CDS	76459163	76459426	76459163	ID=Msa0573330-mRNA-1:cds;Parent=Msa0573330-mRNA-1
chr4_1	three_prime_UTR	76458996	76459162	76458996	ID=Msa0573330-mRNA-1:three_prime_utr;Parent=Msa0573330-mRNA-1

Gene Sequence

>Msa0573330

ATGGCAATGGCTTGCATTCCTCACATTCTCTCTCCTCTTTCTCACTCTACAACACTTGTTAATCTCACCAACAAAACCAATTTCGAGATTCACAACAGAACCTCCATCACCATTTCCTCAAATTCAAGGTCAAAGAAGAAAACCTTCGCCGTTGGGAATCGTGTCGGTGTTGAGACTGAAACTGCAGTTATCGAAATTGAGAAGCGCCAATTGCAAGTTTCCAAAGGCTACCCTTCACCCTACGGTGCCACTCCTCAAGAAGACGGGGTCAATTTCGCCATTTACTCACTCAATTCACTCTCAGCTACTCTCTGCTTCTTCACTCTTTCTGACTTCAAAAACAATAAAGTGACGGAGTACATTACTCTTGATCCATTGGTGAATAAAACAGGATGTGTTTGGCATGTGTTTCTAAAAGGAGATTTTAAAGATATGCTCTATGCTTATAAATTTGATGGCAAATTTTCTCCTCAACACGGTCACTACTATGATTCTTCTCGTATTTTAATCGACCCTTACGCAAAAGCAGTTATAAGCAGAGGAGAGTTTGGGGAAGTAGGACCTGATGGTAATTGCTGGCCCCAAATGGCTGGTATGGTACCTTTTGATCATGAGGAGTTTGACTGGGAAGGTGAATTGCCTTTGAAATATCCACAAAAGGATCTTATTATATATGAAATGCATGTGAGAGGGTTTACAAAGCATGAGTCGAGTAAGGCCGAGTTCCCTGGTACATATCTTGGTGTAGTGGAGAAGCTTGATCACTTAAAGGAACTTGGAGTAAATTGTATAGAATTAATGCCATGTCATGAGTTCAATGAGCTGGAATACTACAGTTACAATGCTATTCAGGGGGACTATAGGGTCAATTTTTGGGGCTATTCAACCATCAATTACTTTTCACCAATGATAAGATACTCATCAGCTGGCATACAAAACTGTGGCCATGATGGGATTAATGAAATGAAGCTCCTCATCAAAGAGGCACACAGGCGAGGAATAGAGGTTATCATGGATGTTGTTTTCAATCATACAGCTGAAGGGAATGAGAAGGGTCCCATTATTTCTTTTAGAGGAGTTGACAATAGCGTGTATTACATGGTAGCACCCAAGGGGGAATTCTACAACTATTCAGGATGTGGGAACACGTTTAATTGCAACCATCCCGTTGTAAGGAAATTTATAGTGGACTGCTTAAGATATTGGGTAACAGAAATGCACGTGGATGGTTTTCGCTTTGATCTTGCTTCTATTATGACCAGGAGTAGCAGTCTCTGGAACGGAGTTAATGTATTTGGTGCTCCAATAGAAGGTGACTTGCTGACAATTGGAACCCCTTTAAGCAGTCCGCCATTGATTGATATGATCAGTAATGATCCAATACTTCGTGGAGTGAAGCTTATAGCTGAAGCCTGGGATGCTGGAGGCCTGTACCAAGTTGGCACTTTCCCTCACTGGGGTATTTGGTCGGAATGGAATGGGAAGTACAGAGACACTGTACGCCAGTTTATCAAGGGTACAGATGGCTTTGCTGGAGCATTTGCTGAATGTATTTGTGGGAGTCCTAATTTGTATCAGGGAGGAAGAAAACCATGGAATAGTATTAACCTTGTATGTGCTCATGATGGCTTCACTCTAGCTGATTTGGTGACTTACAACAACAAGCATAACTTGCCCAATGGAGAAGACAACAATGATGGAGAAAATCACAATAGTAGCTGGAACTGTGGAGAGGAGGGGGAGTTTGTCAGTGCCTCAGTAAAGAAATTGAGGAAACGACAAATGCGTAATTTCTTTCTTTCTCTCATGGTTTCCCAGGGAGTTCCGATGATATATATGGGAGATGAATATGGACATACAAAAGGAGGAAACAACAATACCTACTGTCATGATAATTACCTTAATTATTTCCGATGGGACAAAAAGGAAGAATCCTCGTCAGACTTCTTCAGATTTTGCCGCCTTTTGACCAAGTTCCGCCAGGAATGCGAGTCGCTTGGCCTAGATGACTTCCCGACATCCGAGAGGCTTCAGTGGCATGGCCATTTTCCTGTAACACCAGACTGGTCTGAATCTAGCCGTTTTGTGGCTTTTACCCTGATGGACCCGGTGAAGGGAGAAATTTATGTTGCTTTCAATACAAGTCATTTACCTTTCACTATTACCTTGCCAGAGCGTCCTGGATACATATGGGAACCTCTCGTAGACACCAGCAAGAAAGCACCATATGATTTTCTCACACCTGATCTTCCCGGAAGAGATATTGCAATACAGCAGTATGCTCAGTTTCTTGACGCCAATATGTATCCCATGCTTAGTTACTCTTCAATCATCCTTTTGCGCACCCCCGATGTAAATGCTTAG

Protein sequence

>Msa0573330

MAMACIPHILSPLSHSTTLVNLTNKTNFEIHNRTSITISSNSRSKKKTFAVGNRVGVETETAVIEIEKRQLQVSKGYPSPYGATPQEDGVNFAIYSLNSLSATLCFFTLSDFKNNKVTEYITLDPLVNKTGCVWHVFLKGDFKDMLYAYKFDGKFSPQHGHYYDSSRILIDPYAKAVISRGEFGEVGPDGNCWPQMAGMVPFDHEEFDWEGELPLKYPQKDLIIYEMHVRGFTKHESSKAEFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYNAIQGDYRVNFWGYSTINYFSPMIRYSSAGIQNCGHDGINEMKLLIKEAHRRGIEVIMDVVFNHTAEGNEKGPIISFRGVDNSVYYMVAPKGEFYNYSGCGNTFNCNHPVVRKFIVDCLRYWVTEMHVDGFRFDLASIMTRSSSLWNGVNVFGAPIEGDLLTIGTPLSSPPLIDMISNDPILRGVKLIAEAWDAGGLYQVGTFPHWGIWSEWNGKYRDTVRQFIKGTDGFAGAFAECICGSPNLYQGGRKPWNSINLVCAHDGFTLADLVTYNNKHNLPNGEDNNDGENHNSSWNCGEEGEFVSASVKKLRKRQMRNFFLSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNYLNYFRWDKKEESSSDFFRFCRLLTKFRQECESLGLDDFPTSERLQWHGHFPVTPDWSESSRFVAFTLMDPVKGEIYVAFNTSHLPFTITLPERPGYIWEPLVDTSKKAPYDFLTPDLPGRDIAIQQYAQFLDANMYPMLSYSSIILLRTPDVNA*