AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175590 MtrunA17_Chr8g0345771 92.381 525 23 8 17 532 1 517 0.0 855
Msa1175590 MtrunA17_Chr7g0276471 89.815 108 11 0 185 292 116 223 1.88e-64 217
Msa1175590 MtrunA17_Chr5g0422501 43.697 238 84 8 94 295 127 350 1.37e-47 171
Msa1175590 MtrunA17_Chr1g0178071 69.912 113 30 2 182 292 71 181 3.13e-47 167
Msa1175590 MtrunA17_Chr7g0266821 72.381 105 26 2 191 295 65 166 2.10e-45 161
Msa1175590 MtrunA17_Chr1g0198661 63.415 123 30 2 183 292 188 308 2.94e-43 158
Msa1175590 MtrunA17_Chr1g0213701 52.427 103 43 2 172 274 150 246 9.41e-28 113
Msa1175590 MtrunA17_Chr4g0012861 35.294 119 69 4 186 302 314 426 5.74e-15 78.2
Msa1175590 MtrunA17_Chr2g0281191 37.273 110 61 4 186 293 352 455 5.18e-14 75.1
Msa1175590 MtrunA17_Chr5g0432721 39.560 91 50 3 186 274 321 408 7.54e-14 74.7
Msa1175590 MtrunA17_Chr3g0107701 39.560 91 50 3 186 274 338 425 2.84e-13 72.8
Msa1175590 MtrunA17_Chr7g0244871 39.326 89 49 3 186 272 12 97 9.60e-13 64.7
Msa1175590 MtrunA17_Chr4g0046371 40.206 97 56 2 185 279 146 242 3.54e-12 68.9
Msa1175590 MtrunA17_Chr2g0282961 35.897 117 73 2 165 279 136 252 5.00e-12 68.6
Msa1175590 MtrunA17_Chr2g0326761 37.624 101 61 2 182 280 103 203 1.63e-11 67.0
Msa1175590 MtrunA17_Chr3g0115271 30.882 136 81 3 156 290 94 217 4.24e-11 65.5
Msa1175590 MtrunA17_Chr4g0028971 39.000 100 59 2 182 279 104 203 8.79e-11 64.7
Msa1175590 MtrunA17_Chr1g0199681 35.052 97 62 1 180 275 186 282 8.91e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175590 AT2G46870.1 47.492 299 92 9 173 470 21 255 3.83e-73 235
Msa1175590 AT1G01030.1 48.136 295 91 11 182 465 51 294 1.33e-67 222
Msa1175590 AT3G61970.1 43.322 307 92 11 167 470 3 230 3.96e-65 214
Msa1175590 AT1G01030.2 84.685 111 16 1 182 291 51 161 1.30e-61 206
Msa1175590 AT4G01500.1 36.467 351 147 9 179 509 28 322 2.99e-52 181
Msa1175590 AT1G68840.2 44.700 217 94 5 94 292 85 293 1.30e-48 172
Msa1175590 AT1G68840.1 44.700 217 94 5 94 292 85 293 1.30e-48 172
Msa1175590 AT3G11580.4 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa1175590 AT3G11580.2 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa1175590 AT3G11580.5 65.289 121 29 2 182 291 24 142 5.44e-48 166
Msa1175590 AT3G11580.1 65.289 121 29 2 182 291 24 142 9.84e-48 167
Msa1175590 AT1G13260.1 42.544 228 85 7 94 292 82 292 2.52e-47 168
Msa1175590 AT5G06250.5 58.824 136 44 2 183 308 42 175 9.75e-47 164
Msa1175590 AT3G11580.3 63.710 124 32 2 179 291 21 142 1.23e-46 167
Msa1175590 AT5G06250.4 66.387 119 28 2 183 291 42 158 1.50e-46 164
Msa1175590 AT5G06250.2 66.387 119 28 2 183 291 42 158 1.52e-46 164
Msa1175590 AT5G06250.1 58.824 136 44 2 183 308 42 175 3.45e-46 163
Msa1175590 AT5G06250.3 58.824 136 44 2 183 308 42 175 3.65e-46 163
Msa1175590 AT2G36080.3 69.027 113 30 2 182 291 33 143 6.17e-45 158
Msa1175590 AT2G36080.4 67.826 115 32 2 180 291 31 143 6.27e-45 156
Msa1175590 AT2G36080.2 67.826 115 32 2 180 291 31 143 6.27e-45 156
Msa1175590 AT2G36080.1 69.027 113 30 2 182 291 33 143 7.39e-45 159
Msa1175590 AT1G25560.1 63.866 119 33 2 183 293 191 307 2.35e-44 160
Msa1175590 AT3G25730.1 42.342 222 91 7 94 292 82 289 6.90e-44 159
Msa1175590 AT1G50680.1 32.271 251 123 9 65 272 7 253 8.53e-26 108
Msa1175590 AT1G51120.1 34.634 205 102 6 97 272 70 271 1.83e-24 105
Msa1175590 AT4G32010.1 37.273 110 61 4 186 293 285 388 7.58e-15 78.2
Msa1175590 AT4G32010.2 37.273 110 61 4 186 293 281 384 8.03e-15 78.2
Msa1175590 AT2G30470.1 39.560 91 50 3 186 274 294 381 5.29e-14 75.5
Msa1175590 AT1G35240.1 40.496 121 63 5 187 305 126 239 4.20e-13 72.4
Msa1175590 AT1G35520.1 39.669 121 64 5 187 305 126 239 2.36e-12 70.1
Msa1175590 AT1G34310.1 38.843 121 65 5 187 305 126 239 4.23e-12 69.3
Msa1175590 AT2G33860.1 40.217 92 54 1 185 275 157 248 1.58e-11 67.4
Msa1175590 AT1G35540.1 38.843 121 65 5 187 305 126 239 2.07e-11 67.0
Msa1175590 AT1G34410.1 38.017 121 66 5 187 305 126 239 2.60e-11 66.6
Msa1175590 AT5G60450.2 29.801 151 97 2 132 281 106 248 6.93e-11 65.5
Msa1175590 AT5G60450.1 29.801 151 97 2 132 281 130 272 7.47e-11 65.5

Find 76 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGATTTAGATACTCTTAT+TGG 0.204888 8_1:-7027112 Msa1175590:CDS
TTATCAAGTCAAATTCTTCT+TGG 0.232204 8_1:+7027798 None:intergenic
ATGTTTCCATTTCATCAATA+TGG 0.246411 8_1:-7026738 Msa1175590:CDS
TTTAAAGCAAATAGATTTCA+TGG 0.253920 8_1:-7027405 Msa1175590:CDS
AACAACAATATTCTATTAGA+TGG 0.265622 8_1:-7026875 Msa1175590:CDS
GCAGCATCTAAAGGAGGATT+AGG 0.296328 8_1:-7027479 Msa1175590:CDS
ATAGAATATTGTTGTTGATT+AGG 0.302183 8_1:+7026882 None:intergenic
AATTCATCTGATTGTGTAAA+GGG 0.302465 8_1:+7026772 None:intergenic
CTACTAATGGTGCTGCAAAA+AGG 0.355470 8_1:-7026479 Msa1175590:CDS
GCTGCTGAATTGTGAGATTC+TGG 0.358440 8_1:+7027497 None:intergenic
GGCATAGGTTGTTTATAGAT+TGG 0.359581 8_1:-7026977 Msa1175590:CDS
TTATTCACAAGAAGAATTAG+AGG 0.367007 8_1:-7027744 Msa1175590:CDS
CCACCACCATATTGATGAAA+TGG 0.378629 8_1:+7026732 None:intergenic
GAAGATAAAGAGAAATTAGA+AGG 0.384050 8_1:+7027626 None:intergenic
TGCTGATGTTGTAACCTTTG+TGG 0.393602 8_1:+7026810 None:intergenic
TGTTCTTGTTGTTGTGGAAC+AGG 0.398968 8_1:+7027329 None:intergenic
CAACAAGAAGGAGGAGGAGG+AGG 0.405771 8_1:-7026597 Msa1175590:CDS
ATTTGACTTGATAATTATCA+TGG 0.414547 8_1:-7027789 Msa1175590:CDS
CAAAGCTATGTTATGACAAA+AGG 0.424983 8_1:-7027080 Msa1175590:CDS
GCGGCGTCGGCGAATTGTTT+AGG 0.427168 8_1:-7026998 Msa1175590:CDS
CTTTAAATTTGTGAAATTTG+AGG 0.440342 8_1:+7027421 None:intergenic
TGTTGTAACCTTTGTGGTGT+TGG 0.444187 8_1:+7026816 None:intergenic
TTCAACAAGTGATGATAACT+TGG 0.444286 8_1:-7026415 Msa1175590:CDS
GCTACTACTAGTACTACTAA+TGG 0.446131 8_1:-7026492 Msa1175590:CDS
TGTTGGGAAACTAAACCGTT+TGG 0.462142 8_1:-7027234 Msa1175590:CDS
TGATGATGATAATGAGAAAC+AGG 0.463873 8_1:+7026537 None:intergenic
TGTTGATTAGGAAGAAAGAA+AGG 0.468194 8_1:+7026894 None:intergenic
AAATTCATCTGATTGTGTAA+AGG 0.468921 8_1:+7026771 None:intergenic
TCATTTGATGTTGAATCAAG+TGG 0.470685 8_1:+7027179 None:intergenic
ACCATCACTTCAACATTTGA+AGG 0.471635 8_1:-7026373 Msa1175590:CDS
AACCTTTGTGGTGTTGGATA+AGG 0.473019 8_1:+7026822 None:intergenic
GTTGTAACACCAAGTGATGT+TGG 0.474361 8_1:-7027251 Msa1175590:CDS
ACAACAATATTCTATTAGAT+GGG 0.482618 8_1:-7026874 Msa1175590:CDS
CATTACTAGTTAAATTTCCA+TGG 0.483330 8_1:+7026514 None:intergenic
TTGCATCTTGATGTTGGTGA+TGG 0.485306 8_1:+7027447 None:intergenic
CAGCATCTAAAGGAGGATTA+GGG 0.488321 8_1:-7027478 Msa1175590:CDS
CAGCAACAAGAAGGAGGAGG+AGG 0.488402 8_1:-7026600 Msa1175590:CDS
AAGATAGAAATGGAAAATTG+TGG 0.489600 8_1:-7027133 Msa1175590:CDS
TTGTAACACCAAGTGATGTT+GGG 0.490137 8_1:-7027250 Msa1175590:CDS
TCTTGTTGTTCTTGTTGTTG+TGG 0.492978 8_1:+7027323 None:intergenic
TCGGCGAATTGTTTAGGCAT+AGG 0.495937 8_1:-7026992 Msa1175590:CDS
TTTCTCATCAACAAAATCAA+TGG 0.499739 8_1:-7027550 Msa1175590:CDS
CACAATTCAGCAGCATCTAA+AGG 0.501419 8_1:-7027488 Msa1175590:CDS
CTTCCTTGAGGCATTGATGA+TGG 0.504465 8_1:+7026636 None:intergenic
CCATTTCATCAATATGGTGG+TGG 0.507266 8_1:-7026732 Msa1175590:CDS
AACATCAACAAGATTTGAAG+AGG 0.528740 8_1:-7026319 Msa1175590:CDS
CATCAACAAAATCAATGGCT+AGG 0.531892 8_1:-7027545 Msa1175590:CDS
GATAAAGAGAAATTAGAAGG+TGG 0.541995 8_1:+7027629 None:intergenic
AAGGTTGTTTGGTGTGAACA+TGG 0.542303 8_1:-7026454 Msa1175590:CDS
GCTATGTTATGACAAAAGGT+TGG 0.544721 8_1:-7027076 Msa1175590:CDS
TTTAGTTTCCCAACATCACT+TGG 0.546847 8_1:+7027242 None:intergenic
GATTCAACATCAAATGAGAA+AGG 0.548994 8_1:-7027173 Msa1175590:CDS
TTATGATGATGAGTTGTTGA+AGG 0.549913 8_1:+7027596 None:intergenic
AGTGATGGTACTATTGAAGA+AGG 0.553751 8_1:+7026387 None:intergenic
ACCTTCAAATGTTGAAGTGA+TGG 0.554721 8_1:+7026372 None:intergenic
GAAAGTGTTTCTTCATGATG+AGG 0.555132 8_1:+7026348 None:intergenic
TTTCCATTTCATCAATATGG+TGG 0.556128 8_1:-7026735 Msa1175590:CDS
TTTGGTGTGAACATGGAGTG+TGG 0.563933 8_1:-7026447 Msa1175590:CDS
GTGAAAAGTGTTGCTGATGA+AGG 0.570944 8_1:+7026918 None:intergenic
GTTTCATTTCAACGCGGCGT+CGG 0.571504 8_1:-7027011 Msa1175590:CDS
AGGTTGTTGCATCTTGATGT+TGG 0.573287 8_1:+7027441 None:intergenic
TGAGGCATTGATGATGGTGC+TGG 0.585946 8_1:+7026642 None:intergenic
AGTACAAGACAGCAACAAGA+AGG 0.600583 8_1:-7026609 Msa1175590:CDS
CAATATTCTATTAGATGGGG+AGG 0.609587 8_1:-7026870 Msa1175590:CDS
AGACAGCAACAAGAAGGAGG+AGG 0.619946 8_1:-7026603 Msa1175590:CDS
GATTTCATGGAATTGTCACT+AGG 0.623329 8_1:-7027392 Msa1175590:CDS
TTCCTTATCCAACACCACAA+AGG 0.633231 8_1:-7026824 Msa1175590:CDS
ACAAGACAGCAACAAGAAGG+AGG 0.633565 8_1:-7026606 Msa1175590:CDS
CAACAATATTCTATTAGATG+GGG 0.645043 8_1:-7026873 Msa1175590:CDS
GCACCATCATCAATGCCTCA+AGG 0.646120 8_1:-7026639 Msa1175590:CDS
TCTCATTATCATCATCACCA+TGG 0.646213 8_1:-7026531 Msa1175590:CDS
CTTGTACTCAAGCTTCCTTG+AGG 0.650771 8_1:+7026624 None:intergenic
GGTGTGAACATGGAGTGTGG+TGG 0.666596 8_1:-7026444 Msa1175590:CDS
TCTTGTTGTTGTGGAACAGG+AGG 0.666596 8_1:+7027332 None:intergenic
AATTCAGCAGCATCTAAAGG+AGG 0.671535 8_1:-7027485 Msa1175590:CDS
GACATTGTTTCATTTCAACG+CGG 0.724243 8_1:-7027017 Msa1175590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAGAAAAAAATATATT+GGG + chr8_1:7026309-7026328 None:intergenic 10.0%
!! TTTGAAAGAAAAAAATATAT+TGG + chr8_1:7026310-7026329 None:intergenic 10.0%
!! TGGGTTATTAAAAAAAATAT+GGG + chr8_1:7026290-7026309 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG + chr8_1:7026291-7026310 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG + chr8_1:7026338-7026357 None:intergenic 15.0%
!! AAAAATATTGTATATGATGA+GGG + chr8_1:7026397-7026416 None:intergenic 15.0%
!! AAAAAATATTGTATATGATG+AGG + chr8_1:7026398-7026417 None:intergenic 15.0%
!! AAAAGAATTACCAAGAAAAA+TGG + chr8_1:7026233-7026252 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG + chr8_1:7026289-7026308 None:intergenic 20.0%
!! AAAATATTGTATATGATGAG+GGG + chr8_1:7026396-7026415 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG - chr8_1:7026490-7026509 Msa1175590:CDS 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG + chr8_1:7026861-7026880 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG - chr8_1:7026874-7026893 Msa1175590:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG + chr8_1:7027231-7027250 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG + chr8_1:7027400-7027419 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG - chr8_1:7027404-7027423 Msa1175590:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG - chr8_1:7027405-7027424 Msa1175590:CDS 20.0%
!!! ATGGTTTTGTTTTTGTCTTT+AGG - chr8_1:7026092-7026111 Msa1175590:three_prime_UTR 25.0%
!!! TGGTTTTGTTTTTGTCTTTA+GGG - chr8_1:7026093-7026112 Msa1175590:three_prime_UTR 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG + chr8_1:7026167-7026186 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG + chr8_1:7026194-7026213 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG + chr8_1:7026206-7026225 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG + chr8_1:7026207-7026226 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG + chr8_1:7026221-7026240 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG - chr8_1:7026220-7026239 Msa1175590:three_prime_UTR 25.0%
! TTATCAAGTCAAATTCTTCT+TGG + chr8_1:7026484-7026503 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG - chr8_1:7026535-7026554 Msa1175590:CDS 25.0%
! GAAGATAAAGAGAAATTAGA+AGG + chr8_1:7026656-7026675 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG - chr8_1:7026729-7026748 Msa1175590:CDS 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG - chr8_1:7027136-7027155 Msa1175590:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG - chr8_1:7027146-7027165 Msa1175590:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG - chr8_1:7027406-7027425 Msa1175590:CDS 25.0%
! AATTCATCTGATTGTGTAAA+GGG + chr8_1:7027510-7027529 None:intergenic 25.0%
! AAATTCATCTGATTGTGTAA+AGG + chr8_1:7027511-7027530 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG - chr8_1:7027541-7027560 Msa1175590:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG + chr8_1:7027610-7027629 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG + chr8_1:7027768-7027787 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG + chr8_1:7028050-7028069 None:intergenic 25.0%
CTTCTCTTAGTCAAATATGA+AGG - chr8_1:7026123-7026142 Msa1175590:three_prime_UTR 30.0%
GATAAAGAGAAATTAGAAGG+TGG + chr8_1:7026653-7026672 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG + chr8_1:7026686-7026705 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG + chr8_1:7026995-7027014 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG + chr8_1:7027063-7027082 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG + chr8_1:7027076-7027095 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG + chr8_1:7027103-7027122 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG - chr8_1:7027106-7027125 Msa1175590:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG - chr8_1:7027167-7027186 Msa1175590:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG + chr8_1:7027201-7027220 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG - chr8_1:7027199-7027218 Msa1175590:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG - chr8_1:7027238-7027257 Msa1175590:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG + chr8_1:7027388-7027407 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG - chr8_1:7027544-7027563 Msa1175590:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG + chr8_1:7027745-7027764 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG - chr8_1:7027864-7027883 Msa1175590:intron 30.0%
AACATCAACAAGATTTGAAG+AGG - chr8_1:7027960-7027979 Msa1175590:intron 30.0%
! GAAGAAGCTTCAATGATTTT+TGG - chr8_1:7027994-7028013 Msa1175590:intron 30.0%
AAAGAGGTTCATGTAAGAGT+CGG + chr8_1:7026151-7026170 None:intergenic 35.0%
ATATTGTATATGATGAGGGG+AGG + chr8_1:7026393-7026412 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG - chr8_1:7026734-7026753 Msa1175590:CDS 35.0%
GATTTCATGGAATTGTCACT+AGG - chr8_1:7026887-7026906 Msa1175590:CDS 35.0%
!! TCTTGTTGTTCTTGTTGTTG+TGG + chr8_1:7026959-7026978 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG - chr8_1:7027029-7027048 Msa1175590:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG + chr8_1:7027040-7027059 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG - chr8_1:7027203-7027222 Msa1175590:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG - chr8_1:7027262-7027281 Msa1175590:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG - chr8_1:7027302-7027321 Msa1175590:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG - chr8_1:7027409-7027428 Msa1175590:CDS 35.0%
TCTCATTATCATCATCACCA+TGG - chr8_1:7027748-7027767 Msa1175590:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG - chr8_1:7027787-7027806 Msa1175590:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG - chr8_1:7027814-7027833 Msa1175590:intron 35.0%
AGTGATGGTACTATTGAAGA+AGG + chr8_1:7027895-7027914 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG - chr8_1:7027906-7027925 Msa1175590:intron 35.0%
ACCTTCAAATGTTGAAGTGA+TGG + chr8_1:7027910-7027929 None:intergenic 35.0%
!! GAAAGTGTTTCTTCATGATG+AGG + chr8_1:7027934-7027953 None:intergenic 35.0%
GGAGAATTATGAGGCTGTAA+AGG + chr8_1:7026185-7026204 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG - chr8_1:7026791-7026810 Msa1175590:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG - chr8_1:7026794-7026813 Msa1175590:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG - chr8_1:7026801-7026820 Msa1175590:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG + chr8_1:7026835-7026854 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG + chr8_1:7026841-7026860 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG + chr8_1:7026953-7026972 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG - chr8_1:7027028-7027047 Msa1175590:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG - chr8_1:7027045-7027064 Msa1175590:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG + chr8_1:7027364-7027383 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG - chr8_1:7027455-7027474 Msa1175590:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG + chr8_1:7027460-7027479 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG + chr8_1:7027466-7027485 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG + chr8_1:7027472-7027491 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG + chr8_1:7027550-7027569 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG - chr8_1:7027547-7027566 Msa1175590:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG - chr8_1:7027670-7027689 Msa1175590:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG - chr8_1:7027800-7027819 Msa1175590:CDS 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG - chr8_1:7027806-7027825 Msa1175590:CDS 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG - chr8_1:7027825-7027844 Msa1175590:intron 40.0%
GCTGCTGAATTGTGAGATTC+TGG + chr8_1:7026785-7026804 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG - chr8_1:7026800-7026819 Msa1175590:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG + chr8_1:7026950-7026969 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG - chr8_1:7027287-7027306 Msa1175590:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG + chr8_1:7027646-7027665 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG + chr8_1:7027658-7027677 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG - chr8_1:7027673-7027692 Msa1175590:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG - chr8_1:7027832-7027851 Msa1175590:intron 45.0%
!! AAAATATATAAACAAAAAAA+AGG + chr8_1:7026368-7026387 None:intergenic 5.0%
GTTTCATTTCAACGCGGCGT+CGG - chr8_1:7027268-7027287 Msa1175590:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG + chr8_1:7027640-7027659 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG - chr8_1:7027640-7027659 Msa1175590:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG - chr8_1:7027676-7027695 Msa1175590:CDS 50.0%
CAGCAACAAGAAGGAGGAGG+AGG - chr8_1:7027679-7027698 Msa1175590:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG - chr8_1:7027682-7027701 Msa1175590:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG - chr8_1:7027835-7027854 Msa1175590:intron 55.0%
!! GCGGCGTCGGCGAATTGTTT+AGG - chr8_1:7027281-7027300 Msa1175590:CDS 60.0%
CAAGAAGGAGGAGGAGGAGG+AGG - chr8_1:7027685-7027704 Msa1175590:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 7026092 7028209 7026092 ID=Msa1175590;Name=Msa1175590
chr8_1 mRNA 7026092 7028209 7026092 ID=Msa1175590-mRNA-1;Parent=Msa1175590;Name=Msa1175590-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|0|0.5|1|0|0|2|150|532
chr8_1 exon 7026092 7027832 7026092 ID=Msa1175590-mRNA-1:exon:2536;Parent=Msa1175590-mRNA-1
chr8_1 exon 7028202 7028209 7028202 ID=Msa1175590-mRNA-1:exon:2535;Parent=Msa1175590-mRNA-1
chr8_1 CDS 7028202 7028209 7028202 ID=Msa1175590-mRNA-1:cds;Parent=Msa1175590-mRNA-1
chr8_1 CDS 7026242 7027832 7026242 ID=Msa1175590-mRNA-1:cds;Parent=Msa1175590-mRNA-1
chr8_1 three_prime_UTR 7026092 7026241 7026092 ID=Msa1175590-mRNA-1:three_prime_utr;Parent=Msa1175590-mRNA-1
Gene Sequence

>Msa1175590

ATGGTTTTATTTTGTGAGATCCAAGAAGAATTTGACTTGATAATTATCATGGAGTTGATGCAAGAAGTGAAAGATTATTCACAAGAAGAATTAGAGGAAGATGAAGAAGAAATCATGACAAAAACAACAAGAGATGAAGAAGAAGAAAGTAGTAGTAAGCAACAATTACAACACTGTACTTTTTCTTCTCCACCTTCTAATTTCTCTTTATCTTCTTCATCTCCTTCAACAACTCATCATCATAATCATAATCATGATGTTACAAATGTTTCTCATCAACAAAATCAATGGCTAGGAATGAATCATCATCATCATCATTCACCAGAATCTCACAATTCAGCAGCATCTAAAGGAGGATTAGGGTTATTACACCATCACCAACATCAAGATGCAACAACCTCAAATTTCACAAATTTAAAGCAAATAGATTTCATGGAATTGTCACTAGGTAACAACAATAACAAAAACAAAGATGTTATTAATGTTCCTCCTGTTCCACAACAACAAGAACAACAAGAACAAGAACAGCAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCATTTCAACGCGGCGTCGGCGAATTGTTTAGGCATAGGTTGTTTATAGATTGGAAGAGAAGATCTAATCATAATCATCATAATATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAGCAACAAAATCATCATGACCCTTTACACAATCAGATGAATTTTAATCATAACATGTTTCCATTTCATCAATATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTATATGAGATCATTACCAGCACCATCATCAATGCCTCAAGGAAGCTTGAGTACAAGACAGCAACAAGAAGGAGGAGGAGGAGGAGGAAGCAATGTCTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCATGGAAATTTAACTAGTAATGCTACTACTAGTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCTTCAACAAGTGATGATAACTTGGCTTCTCCTTCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACACTTTCAAGTTCAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGATACTTCTTTGCAATATCATAATTACCAACAACAATGA

Protein sequence

>Msa1175590

MVLFCEIQEEFDLIIIMELMQEVKDYSQEELEEDEEEIMTKTTRDEEEESSSKQQLQHCTFSSPPSNFSLSSSSPSTTHHHNHNHDVTNVSHQQNQWLGMNHHHHHSPESHNSAASKGGLGLLHHHQHQDATTSNFTNLKQIDFMELSLGNNNNKNKDVINVPPVPQQQEQQEQEQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWKRRSNHNHHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPLHNQMNFNHNMFPFHQYGGGNVNHQYNFHHHDPSSVFYMRSLPAPSSMPQGSLSTRQQQEGGGGGGSNVSNMIIDSVPVSHYHHHHGNLTSNATTSTTNGAAKRLRLFGVNMECGGSSSTSDDNLASPSSIVPSLQHLKVPHHEETLSSSTSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ*