AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1069440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069440 MtrunA17_Chr7g0251451 96.970 297 7 2 1 295 1 297 0.0 590
Msa1069440 MtrunA17_Chr5g0409311 46.281 242 118 4 19 249 20 260 5.33e-71 221
Msa1069440 MtrunA17_Chr7g0270061 49.550 222 94 4 55 262 75 292 1.19e-69 218
Msa1069440 MtrunA17_Chr1g0194601 49.765 213 94 2 48 248 71 282 8.04e-69 216
Msa1069440 MtrunA17_Chr4g0038261 42.473 186 106 1 77 261 45 230 5.90e-53 173
Msa1069440 MtrunA17_Chr4g0034751 43.103 174 99 0 76 249 98 271 4.58e-46 156
Msa1069440 MtrunA17_Chr4g0056771 36.316 190 121 0 73 262 91 280 1.33e-38 137
Msa1069440 MtrunA17_Chr4g0055551 35.870 184 110 1 77 252 104 287 2.24e-28 110
Msa1069440 MtrunA17_Chr7g0272191 33.333 183 111 3 86 257 119 301 1.05e-27 109
Msa1069440 MtrunA17_Chr4g0015831 40.909 110 62 1 70 176 12 121 1.35e-26 101
Msa1069440 MtrunA17_CPg0492721 40.909 110 62 1 70 176 12 121 1.35e-26 101
Msa1069440 MtrunA17_Chr1g0207341 32.418 182 113 2 77 248 155 336 1.76e-25 104
Msa1069440 MtrunA17_Chr1g0184041 43.750 80 45 0 91 170 100 179 1.52e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069440 AT1G66670.1 67.434 304 85 4 1 293 1 301 5.56e-143 405
Msa1069440 AT5G45390.1 53.403 191 89 0 75 265 77 267 1.79e-70 220
Msa1069440 AT1G02560.1 50.000 212 93 2 49 248 75 285 5.94e-70 219
Msa1069440 AT5G23140.1 41.954 174 101 0 77 250 48 221 1.26e-52 172
Msa1069440 AT1G11750.1 42.529 174 100 0 76 249 95 268 5.36e-46 156
Msa1069440 AT1G11750.2 42.529 174 100 0 76 249 113 286 7.19e-46 156
Msa1069440 ATCG00670.1 42.775 173 98 1 76 247 21 193 3.92e-44 149
Msa1069440 AT1G12410.1 37.572 173 108 0 76 248 88 260 5.73e-40 141
Msa1069440 AT4G17040.1 36.111 180 107 1 77 248 105 284 2.31e-34 127
Msa1069440 AT1G09130.2 33.659 205 122 3 71 264 115 316 7.14e-32 121
Msa1069440 AT1G09130.1 33.659 205 122 3 71 264 115 316 7.14e-32 121
Msa1069440 AT1G09130.3 33.659 205 122 3 71 264 115 316 1.40e-31 121
Msa1069440 AT1G49970.1 34.184 196 111 3 64 249 166 353 8.62e-29 114

Find 88 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTTGATTCTTCTCTTC+TGG 0.169736 7_2:-65029532 None:intergenic
AGTATCAAGCTCTTCGAATT+TGG 0.170892 7_2:-65029773 None:intergenic
AAACTCAGTTAAAGAATATA+TGG 0.230278 7_2:+65034749 Msa1069440:CDS
GTTCTTTGTTTGGTTGAAAA+TGG 0.236978 7_2:-65029661 None:intergenic
TCACCTCCAACAAGTATTAA+AGG 0.249669 7_2:+65034893 Msa1069440:three_prime_UTR
CCATATCCAACCTGCTCTTC+AGG 0.259693 7_2:-65034518 None:intergenic
CTGGTTTAGCTTCTTTGTTT+TGG 0.261033 7_2:-65029513 None:intergenic
AATAAACAACTTGATATCTT+TGG 0.296441 7_2:-65030976 None:intergenic
ATGGGAAAATATATTCATTA+AGG 0.299187 7_2:-65035012 None:intergenic
AAGCCATGGAGAAGCGGTTT+TGG 0.315920 7_2:-65029749 None:intergenic
GTATCAAGCTCTTCGAATTT+GGG 0.334666 7_2:-65029772 None:intergenic
AAAATCCCTTTAATACTTGT+TGG 0.361759 7_2:-65034899 None:intergenic
ATCTGCCTTGCATAACTTCA+TGG 0.362484 7_2:-65031623 None:intergenic
GTTTAACAATGTCTTCTTGT+TGG 0.365237 7_2:-65029608 None:intergenic
TGTCTTCTTGTTGGAGTTGA+AGG 0.365755 7_2:-65029599 None:intergenic
GACCCACTTTATCCTCTAAC+TGG 0.374521 7_2:+65029704 Msa1069440:CDS
AACGATTGTTGTTCTTTGTT+TGG 0.379018 7_2:-65029671 None:intergenic
TATTCTTGTGCAGATTGAAT+TGG 0.379902 7_2:+65034603 Msa1069440:intron
TCAACTGCTGTATGAGTTAT+GGG 0.385958 7_2:+65034823 Msa1069440:exon
CCTTGGACTTGCAGCATCCA+TGG 0.388620 7_2:+65031660 Msa1069440:CDS
TCATACAACCTCATGACATA+TGG 0.392685 7_2:-65035031 None:intergenic
ATCAACTGCTGTATGAGTTA+TGG 0.398508 7_2:+65034822 Msa1069440:exon
TTGTTGGAGTTGAAGGTTAG+TGG 0.402106 7_2:-65029592 None:intergenic
AAGATACTATCAAGAATTAC+AGG 0.430602 7_2:+65034491 Msa1069440:CDS
CATCAACCTCTCGGGTCTGC+TGG 0.435448 7_2:+65031751 Msa1069440:CDS
CACCTCCAACAAGTATTAAA+GGG 0.438792 7_2:+65034894 Msa1069440:three_prime_UTR
TGAATCATAACTCTGGAATT+CGG 0.444419 7_2:-65031730 None:intergenic
ATGGGAAACAAGCCAGTTAG+AGG 0.447565 7_2:-65029716 None:intergenic
TTTGGTAACTACTAACCAAT+GGG 0.458350 7_2:-65029495 None:intergenic
TAATACTTGTTGGAGGTGAT+AGG 0.459060 7_2:-65034889 None:intergenic
GGTGCATTCCTCCTTGCTGC+TGG 0.463122 7_2:+65031682 Msa1069440:CDS
CCTGGTGGTTCTATTACTGC+TGG 0.464946 7_2:+65031005 Msa1069440:CDS
CCGTATTCTTTCGCTTCCCA+TGG 0.482110 7_2:-65034652 None:intergenic
CCTCCTTGCTGCTGGTACGA+AGG 0.484471 7_2:+65031690 Msa1069440:CDS
GCAGTTGATGTTTCCTCTGA+GGG 0.485396 7_2:-65034808 None:intergenic
ATCCCTTTAATACTTGTTGG+AGG 0.487836 7_2:-65034896 None:intergenic
GCAATTGGAGCAACTAGTCC+TGG 0.489167 7_2:-65034706 None:intergenic
CTTGGACTTGCAGCATCCAT+GGG 0.489173 7_2:+65031661 Msa1069440:CDS
CTCCTTGCTGCTGGTACGAA+GGG 0.490742 7_2:+65031691 Msa1069440:CDS
TACAGGAAAACCTGAAGAGC+AGG 0.500445 7_2:+65034508 Msa1069440:CDS
GGGAATTAGTTGCAGTGGTG+TGG 0.501092 7_2:-65035114 None:intergenic
GGTGGCGTTGCATCTGCAAT+TGG 0.501272 7_2:-65034721 None:intergenic
CCATGGGAAGCGAAAGAATA+CGG 0.506339 7_2:+65034652 Msa1069440:CDS
AACTCAGTTAAAGAATATAT+GGG 0.507439 7_2:+65034750 Msa1069440:CDS
CATACAACCTCATGACATAT+GGG 0.509000 7_2:-65035030 None:intergenic
GTTGATGATGTTATTGATGA+CGG 0.512156 7_2:+65034679 Msa1069440:CDS
GAAATTGAAGGAAACTCAAA+AGG 0.513901 7_2:+65034772 Msa1069440:CDS
CAACCTCTCGGGTCTGCTGG+TGG 0.514584 7_2:+65031754 Msa1069440:CDS
TGCTGCAAGTCCAAGGCAAA+CGG 0.520391 7_2:-65031653 None:intergenic
GTTATTGATGACGGAAAACC+AGG 0.520706 7_2:+65034688 Msa1069440:CDS
GGAAGCGAAAGAATACGGTT+TGG 0.522443 7_2:+65034657 Msa1069440:CDS
AAGAATATATGGGAAATTGA+AGG 0.523845 7_2:+65034760 Msa1069440:CDS
CTGCTGGTACGAAGGGGAAG+AGG 0.530379 7_2:+65031698 Msa1069440:CDS
GATGTGTCTACCGTTTGCCT+TGG 0.531095 7_2:+65031643 Msa1069440:CDS
AAGTTGTTTATTAATTCACC+TGG 0.542020 7_2:+65030987 Msa1069440:CDS
TTGAAAATGGAATTTGAGAG+TGG 0.542107 7_2:-65029648 None:intergenic
GTTATGATTCATCAACCTCT+CGG 0.542234 7_2:+65031742 Msa1069440:CDS
TTATGATTCATCAACCTCTC+GGG 0.550146 7_2:+65031743 Msa1069440:CDS
AAAAGGGTCACTGTTCCCAT+TGG 0.553113 7_2:+65029480 Msa1069440:five_prime_UTR
AAGCCAGTTAGAGGATAAAG+TGG 0.554569 7_2:-65029707 None:intergenic
CTGCCAAAACCGCTTCTCCA+TGG 0.559788 7_2:+65029746 Msa1069440:CDS
CCATGGATGCTGCAAGTCCA+AGG 0.569431 7_2:-65031660 None:intergenic
TGGAGGGGAATTAGTTGCAG+TGG 0.572013 7_2:-65035119 None:intergenic
AGGTTGATGAATCATAACTC+TGG 0.580315 7_2:-65031737 None:intergenic
TCTTCGAATTTGGGAAGCCA+TGG 0.593022 7_2:-65029763 None:intergenic
TTGTTTATTAATTCACCTGG+TGG 0.596283 7_2:+65030990 Msa1069440:CDS
TGATGCCATGAAGTTATGCA+AGG 0.601132 7_2:+65031618 Msa1069440:CDS
TAGCAACGTGTAGGTGGTGT+GGG 0.601559 7_2:-65035090 None:intergenic
TTTGGGAAGCCATGGAGAAG+CGG 0.603684 7_2:-65029755 None:intergenic
AGCAAGGAGGAATGCACCCA+TGG 0.612929 7_2:-65031677 None:intergenic
TCCCCTTCGTACCAGCAGCA+AGG 0.615990 7_2:-65031693 None:intergenic
GGTTAGTGGCAAACATGTTG+AGG 0.619604 7_2:-65029578 None:intergenic
AACAACTTGATATCTTTGGT+AGG 0.619736 7_2:-65030972 None:intergenic
AGCAGTTGATGTTTCCTCTG+AGG 0.624058 7_2:-65034809 None:intergenic
TCTTTGACGGAGAAGCATGT+TGG 0.629753 7_2:-65029797 None:intergenic
TGGTGTGGTTAGCAACGTGT+AGG 0.632776 7_2:-65035099 None:intergenic
GATATATCAATTCTCTCGCA+CGG 0.638663 7_2:-65034451 None:intergenic
TGTGGTTAGCAACGTGTAGG+TGG 0.640059 7_2:-65035096 None:intergenic
TCCTTGCTGCTGGTACGAAG+GGG 0.642401 7_2:+65031692 Msa1069440:CDS
TGTGCAGATTGAATTGGACA+CGG 0.645326 7_2:+65034609 Msa1069440:intron
TATGAGTTATGGGACAAGCA+AGG 0.647243 7_2:+65034833 Msa1069440:exon
TTAGCAACGTGTAGGTGGTG+TGG 0.650470 7_2:-65035091 None:intergenic
TAAGAAGAAACTCCCCTCAG+AGG 0.665356 7_2:+65034795 Msa1069440:CDS
CCAGCAGTAATAGAACCACC+AGG 0.675297 7_2:-65031005 None:intergenic
CAGTTGATGTTTCCTCTGAG+GGG 0.678520 7_2:-65034807 None:intergenic
AGCCAGTTAGAGGATAAAGT+GGG 0.686070 7_2:-65029706 None:intergenic
CCTTCGTACCAGCAGCAAGG+AGG 0.704457 7_2:-65031690 None:intergenic
TTTCCACCAGCAGACCCGAG+AGG 0.727221 7_2:-65031757 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAGAAAATAAAATAAAA+AGG + chr7_2:65030022-65030041 Msa1069440:intron 10.0%
!! TTGAGAAAATAAAATAAAAA+GGG + chr7_2:65030023-65030042 Msa1069440:intron 10.0%
!!! TATTCATTTTATTTTATCAT+AGG - chr7_2:65032837-65032856 None:intergenic 10.0%
!! AGAATAAAGTAAAATTAAAA+TGG - chr7_2:65034589-65034608 None:intergenic 10.0%
!!! ATAAAAGTGTGTTTTATTTA+CGG - chr7_2:65032596-65032615 None:intergenic 15.0%
!! TCTAAAAAATAATGATCAAA+TGG + chr7_2:65032743-65032762 Msa1069440:intron 15.0%
!!! GATTATTTTCCTTATTTAAA+TGG + chr7_2:65032910-65032929 Msa1069440:intron 15.0%
!! AAATAAAGCTTAATTGTTTA+AGG + chr7_2:65033756-65033775 Msa1069440:intron 15.0%
!! ATAAAGTAAAATTAAAATGG+TGG - chr7_2:65034586-65034605 None:intergenic 15.0%
!!! TCTTTTTTTGATGTTTTTGT+GGG + chr7_2:65029884-65029903 Msa1069440:intron 20.0%
!!! AAATTTACAAACTTTTCATC+TGG + chr7_2:65029907-65029926 Msa1069440:intron 20.0%
!!! AATTTACAAACTTTTCATCT+GGG + chr7_2:65029908-65029927 Msa1069440:intron 20.0%
!!! TGAGTTTTTAGAAAAAGAAT+GGG + chr7_2:65030205-65030224 Msa1069440:intron 20.0%
!!! ATATGATAATAGTGTTGAAT+TGG + chr7_2:65030346-65030365 Msa1069440:intron 20.0%
!!! TTGATTTTGGGATATTTTTA+TGG + chr7_2:65030392-65030411 Msa1069440:intron 20.0%
!!! TTTATGGTTGTTTTATAATG+TGG + chr7_2:65030408-65030427 Msa1069440:intron 20.0%
!! AAAAAAATGAAAGAACAAAG+AGG + chr7_2:65030451-65030470 Msa1069440:intron 20.0%
!! AAAAAATGAAAGAACAAAGA+GGG + chr7_2:65030452-65030471 Msa1069440:intron 20.0%
!! ATACCATTTGATTAAAACAA+CGG + chr7_2:65030681-65030700 Msa1069440:intron 20.0%
!!! AATTTCTGATAATTTGAAGT+AGG + chr7_2:65030809-65030828 Msa1069440:intron 20.0%
!! AATAAACAACTTGATATCTT+TGG - chr7_2:65030979-65030998 None:intergenic 20.0%
!!! TTTTATATTTGAAGTATGTG+CGG + chr7_2:65031902-65031921 Msa1069440:intron 20.0%
!!! ATATTTTTTCACTCATTTCA+AGG - chr7_2:65031994-65032013 None:intergenic 20.0%
!!! TTCATTTGTTGTAATTCAAA+TGG - chr7_2:65032678-65032697 None:intergenic 20.0%
!! TTTGAATTACAACAAATGAA+AGG + chr7_2:65032678-65032697 Msa1069440:intron 20.0%
!!! CCTTATTTAAATGGAAATTA+CGG + chr7_2:65032919-65032938 Msa1069440:intron 20.0%
!!! TTTTTTCGAAGAAATAAACA+AGG - chr7_2:65033219-65033238 None:intergenic 20.0%
!!! TAAGCTTTATTTAGTTACAA+TGG - chr7_2:65033748-65033767 None:intergenic 20.0%
!!! TTAACTTTAAAGAACAAGAA+AGG - chr7_2:65034138-65034157 None:intergenic 20.0%
!! TATTATGAATTCATAACAGA+TGG - chr7_2:65034282-65034301 None:intergenic 20.0%
!! TGTTATGAATTCATAATATC+TGG + chr7_2:65034284-65034303 Msa1069440:intron 20.0%
!!! ATATGTATGATGATTTCTTT+TGG + chr7_2:65034317-65034336 Msa1069440:intron 20.0%
!!! TACAATAGTTTTAATCATGA+TGG + chr7_2:65034351-65034370 Msa1069440:intron 20.0%
!!! TGATAATTTTATGAATCCAT+GGG + chr7_2:65034636-65034655 Msa1069440:CDS 20.0%
!!! ATATTCTTTAACTGAGTTTT+TGG - chr7_2:65034748-65034767 None:intergenic 20.0%
!! AAACTCAGTTAAAGAATATA+TGG + chr7_2:65034749-65034768 Msa1069440:CDS 20.0%
!! AACTCAGTTAAAGAATATAT+GGG + chr7_2:65034750-65034769 Msa1069440:CDS 20.0%
!! ATGGGAAAATATATTCATTA+AGG - chr7_2:65035015-65035034 None:intergenic 20.0%
! GAATCAAAGAAGAAGAAAAA+TGG + chr7_2:65029543-65029562 Msa1069440:exon 25.0%
! CCAAAAAAACAATTCTTTGA+CGG - chr7_2:65029813-65029832 None:intergenic 25.0%
!!! CGTCAAAGAATTGTTTTTTT+GGG + chr7_2:65029811-65029830 Msa1069440:CDS 25.0%
!!! GTCTTTTTTTGATGTTTTTG+TGG + chr7_2:65029883-65029902 Msa1069440:intron 25.0%
!!! TTTTCTAAAAACTCAGTATC+AGG - chr7_2:65030200-65030219 None:intergenic 25.0%
!!! CTGAGTTTTTAGAAAAAGAA+TGG + chr7_2:65030204-65030223 Msa1069440:intron 25.0%
!!! TTTGATGTTGTTGTTGATTT+TGG + chr7_2:65030379-65030398 Msa1069440:intron 25.0%
!!! TTGATGTTGTTGTTGATTTT+GGG + chr7_2:65030380-65030399 Msa1069440:intron 25.0%
!!! TTTTAAGTATTAGTCTACGA+TGG - chr7_2:65030567-65030586 None:intergenic 25.0%
! CTCTAGATAATAGATGTTAA+TGG + chr7_2:65030620-65030639 Msa1069440:intron 25.0%
! CTATTTCAATCGTAAAAATG+AGG - chr7_2:65030650-65030669 None:intergenic 25.0%
!!! TATCCGTTGTTTTAATCAAA+TGG - chr7_2:65030687-65030706 None:intergenic 25.0%
! AAGTTGTTTATTAATTCACC+TGG + chr7_2:65030987-65031006 Msa1069440:CDS 25.0%
! AAACTAATGCGAGTTATTAA+AGG - chr7_2:65031400-65031419 None:intergenic 25.0%
! TTTATTGAATCAGTGAGAAT+TGG + chr7_2:65031485-65031504 Msa1069440:intron 25.0%
! AGATTCATTAAACTGAGAAA+TGG - chr7_2:65031525-65031544 None:intergenic 25.0%
! TAGTTGACAATAATCAAAAC+CGG - chr7_2:65031807-65031826 None:intergenic 25.0%
! GATTATTGTCAACTAGTAAT+AGG + chr7_2:65031812-65031831 Msa1069440:intron 25.0%
!!! ATATCTTTTTTCATAAACCC+CGG + chr7_2:65032010-65032029 Msa1069440:intron 25.0%
!! TTTTTGCTAATCAAACTAGT+TGG - chr7_2:65032082-65032101 None:intergenic 25.0%
!!! TTTTTTCTTTCTCTTTCACA+AGG - chr7_2:65032142-65032161 None:intergenic 25.0%
! ATTATAGAAGTAGAACACTA+TGG + chr7_2:65032401-65032420 Msa1069440:intron 25.0%
! TGGATTCTACAAAATCATAT+AGG - chr7_2:65032658-65032677 None:intergenic 25.0%
!!! TCATTATTTTTTAGAAGTGC+TGG - chr7_2:65032738-65032757 None:intergenic 25.0%
!! AATAATCACACAACTTTTGA+TGG - chr7_2:65032897-65032916 None:intergenic 25.0%
! CCGTAATTTCCATTTAAATA+AGG - chr7_2:65032922-65032941 None:intergenic 25.0%
!! TATATGTCCTTTTAGTCAAA+TGG - chr7_2:65033503-65033522 None:intergenic 25.0%
! ATAGATTAAGCAACTAAACA+TGG - chr7_2:65034008-65034027 None:intergenic 25.0%
!! AGCTACTGCAAAATAATTTT+TGG - chr7_2:65034225-65034244 None:intergenic 25.0%
!!! ATAGATAGAAGTTTTTTACC+TGG + chr7_2:65034245-65034264 Msa1069440:intron 25.0%
! AAGATACTATCAAGAATTAC+AGG + chr7_2:65034491-65034510 Msa1069440:CDS 25.0%
!! GTGATAATTTTATGAATCCA+TGG + chr7_2:65034635-65034654 Msa1069440:CDS 25.0%
! AAGAATATATGGGAAATTGA+AGG + chr7_2:65034760-65034779 Msa1069440:CDS 25.0%
!!! ATTTTTGAGTATGAAAGCAA+CGG - chr7_2:65034866-65034885 None:intergenic 25.0%
! AAAATCCCTTTAATACTTGT+TGG - chr7_2:65034902-65034921 None:intergenic 25.0%
! TTTGGTAACTACTAACCAAT+GGG - chr7_2:65029498-65029517 None:intergenic 30.0%
!! TTTTGGTAACTACTAACCAA+TGG - chr7_2:65029499-65029518 None:intergenic 30.0%
GTTTAACAATGTCTTCTTGT+TGG - chr7_2:65029611-65029630 None:intergenic 30.0%
TTGAAAATGGAATTTGAGAG+TGG - chr7_2:65029651-65029670 None:intergenic 30.0%
! GTTCTTTGTTTGGTTGAAAA+TGG - chr7_2:65029664-65029683 None:intergenic 30.0%
! AACGATTGTTGTTCTTTGTT+TGG - chr7_2:65029674-65029693 None:intergenic 30.0%
!!! CCGTCAAAGAATTGTTTTTT+TGG + chr7_2:65029810-65029829 Msa1069440:CDS 30.0%
!!! AATTGTTTTTTTGGGTTCTC+AGG + chr7_2:65029819-65029838 Msa1069440:CDS 30.0%
ATAAAATAAAAAGGGCAACC+CGG + chr7_2:65030031-65030050 Msa1069440:intron 30.0%
TTGAATGTAATCACATGTGT+TGG + chr7_2:65030112-65030131 Msa1069440:intron 30.0%
!! ATCACATGTGTTGGTTTAAT+TGG + chr7_2:65030121-65030140 Msa1069440:intron 30.0%
!! TCACATGTGTTGGTTTAATT+GGG + chr7_2:65030122-65030141 Msa1069440:intron 30.0%
ATCATGAAGAATGGACAAAT+AGG + chr7_2:65030297-65030316 Msa1069440:intron 30.0%
TCATGAAGAATGGACAAATA+GGG + chr7_2:65030298-65030317 Msa1069440:intron 30.0%
!! AATGTGGTTTCATTTTGAAG+AGG + chr7_2:65030424-65030443 Msa1069440:intron 30.0%
! TTCTGATAATTTGAAGTAGG+CGG + chr7_2:65030812-65030831 Msa1069440:intron 30.0%
!!! GATTAGTCAGCTTTTGTTTT+TGG + chr7_2:65030938-65030957 Msa1069440:CDS 30.0%
AACAACTTGATATCTTTGGT+AGG - chr7_2:65030975-65030994 None:intergenic 30.0%
TTGTTTATTAATTCACCTGG+TGG + chr7_2:65030990-65031009 Msa1069440:CDS 30.0%
TACTCAGTATTGTTAAACAG+CGG + chr7_2:65031185-65031204 Msa1069440:intron 30.0%
! ATTGCTATTGTTCTGCAATA+TGG + chr7_2:65031233-65031252 Msa1069440:intron 30.0%
AGCAATTAGCAGAATAATGA+CGG - chr7_2:65031553-65031572 None:intergenic 30.0%
!! TGAATCATAACTCTGGAATT+CGG - chr7_2:65031733-65031752 None:intergenic 30.0%
CGCAGTTAAAGAAAATCATA+TGG - chr7_2:65031948-65031967 None:intergenic 30.0%
!!! TTTTTTCACTCATTTCAAGG+TGG - chr7_2:65031991-65032010 None:intergenic 30.0%
AAGATACAGTACAATACAAG+AGG - chr7_2:65032247-65032266 None:intergenic 30.0%
AGATTCTGACAAGGTTATAT+GGG - chr7_2:65032357-65032376 None:intergenic 30.0%
TAGGATCAGCATAAATTTAG+TGG - chr7_2:65032639-65032658 None:intergenic 30.0%
GGTGATTTGAATTTGACAAT+TGG - chr7_2:65032797-65032816 None:intergenic 30.0%
!!! TTATTTTTTCTGCACTTCTC+TGG + chr7_2:65033258-65033277 Msa1069440:intron 30.0%
AATTTACAGCAAAAACCATG+TGG + chr7_2:65033428-65033447 Msa1069440:intron 30.0%
AAAAGGACATATAATGTTGC+TGG + chr7_2:65033510-65033529 Msa1069440:intron 30.0%
!! ATCCATTGATTCAAAGTTGA+TGG + chr7_2:65033590-65033609 Msa1069440:intron 30.0%
AACCATCAACTTTGAATCAA+TGG - chr7_2:65033595-65033614 None:intergenic 30.0%
GTAGATGCATTATATTAGAG+TGG + chr7_2:65034184-65034203 Msa1069440:intron 30.0%
AAACAGTGAAGTGTAATTAC+AGG + chr7_2:65034412-65034431 Msa1069440:intron 30.0%
!!! TGGAAAGAGAAGTATCATTT+TGG - chr7_2:65034566-65034585 None:intergenic 30.0%
TATTCTTGTGCAGATTGAAT+TGG + chr7_2:65034603-65034622 Msa1069440:intron 30.0%
!! GTTGATGATGTTATTGATGA+CGG + chr7_2:65034679-65034698 Msa1069440:CDS 30.0%
!! TTCTTTAACTGAGTTTTTGG+AGG - chr7_2:65034745-65034764 None:intergenic 30.0%
GAAATTGAAGGAAACTCAAA+AGG + chr7_2:65034772-65034791 Msa1069440:CDS 30.0%
! ATATTTTCCCATATGTCATG+AGG + chr7_2:65035023-65035042 Msa1069440:three_prime_UTR 30.0%
!! CTGGTTTAGCTTCTTTGTTT+TGG - chr7_2:65029516-65029535 None:intergenic 35.0%
CTTCTTTGATTCTTCTCTTC+TGG - chr7_2:65029535-65029554 None:intergenic 35.0%
!! GGTTTTGGCAGATAAATCAT+GGG - chr7_2:65029737-65029756 None:intergenic 35.0%
GTATCAAGCTCTTCGAATTT+GGG - chr7_2:65029775-65029794 None:intergenic 35.0%
AGTATCAAGCTCTTCGAATT+TGG - chr7_2:65029776-65029795 None:intergenic 35.0%
!!! TGAGTGCTTCATAGTTTTGT+GGG - chr7_2:65029951-65029970 None:intergenic 35.0%
! ATTTTCTCTAATTCCCTTCC+CGG - chr7_2:65030085-65030104 None:intergenic 35.0%
ACGCTTTCGATTAGAATAGT+CGG + chr7_2:65030257-65030276 Msa1069440:intron 35.0%
TTGTCCATTCTTCATGATGT+TGG - chr7_2:65030295-65030314 None:intergenic 35.0%
CATGAAGAATGGACAAATAG+GGG + chr7_2:65030299-65030318 Msa1069440:intron 35.0%
ATGAAGAATGGACAAATAGG+GGG + chr7_2:65030300-65030319 Msa1069440:intron 35.0%
TAGGGGGAAAAGGTTTAAAA+AGG + chr7_2:65030316-65030335 Msa1069440:intron 35.0%
ATATAGACCACCTTCATAAG+TGG + chr7_2:65030519-65030538 Msa1069440:intron 35.0%
CTCATGACTCTTCATATTCA+TGG - chr7_2:65030753-65030772 None:intergenic 35.0%
! GTGAATTTCTTTGTTTGAGC+AGG + chr7_2:65030890-65030909 Msa1069440:intron 35.0%
! AATTTCTTTGTTTGAGCAGG+TGG + chr7_2:65030893-65030912 Msa1069440:intron 35.0%
! ACATGGATTGCAGAAATTAG+CGG - chr7_2:65031334-65031353 None:intergenic 35.0%
TGAGAATTGGAAGTGAAGTA+TGG + chr7_2:65031498-65031517 Msa1069440:intron 35.0%
!! AGGTTGATGAATCATAACTC+TGG - chr7_2:65031740-65031759 None:intergenic 35.0%
GTTATGATTCATCAACCTCT+CGG + chr7_2:65031742-65031761 Msa1069440:CDS 35.0%
TTATGATTCATCAACCTCTC+GGG + chr7_2:65031743-65031762 Msa1069440:CDS 35.0%
TTGACAATAATCAAAACCGG+AGG - chr7_2:65031804-65031823 None:intergenic 35.0%
!! AAGGTGGAACTGATTTTAAC+AGG - chr7_2:65031975-65031994 None:intergenic 35.0%
!! CTTAGAGGTGTTTGATCAAA+TGG - chr7_2:65032320-65032339 None:intergenic 35.0%
GCTACATGAATCAAACTTAG+AGG - chr7_2:65032335-65032354 None:intergenic 35.0%
CAGATTCTGACAAGGTTATA+TGG - chr7_2:65032358-65032377 None:intergenic 35.0%
AACTAGAACAGATTCTGACA+AGG - chr7_2:65032366-65032385 None:intergenic 35.0%
GCATACAATAGATTGTGACA+TGG + chr7_2:65032864-65032883 Msa1069440:intron 35.0%
! ATCACACAACTTTTGATGGA+AGG - chr7_2:65032893-65032912 None:intergenic 35.0%
AACCAGGAATATTTACTGAG+GGG - chr7_2:65032953-65032972 None:intergenic 35.0%
GAACCAGGAATATTTACTGA+GGG - chr7_2:65032954-65032973 None:intergenic 35.0%
TACAAAGACAACAAGTTTGC+CGG + chr7_2:65033060-65033079 Msa1069440:intron 35.0%
AACAAGGAAACACTGTTTCA+GGG - chr7_2:65033203-65033222 None:intergenic 35.0%
AAACAAGGAAACACTGTTTC+AGG - chr7_2:65033204-65033223 None:intergenic 35.0%
AAAATAAAGCCAGCGCAATA+GGG - chr7_2:65033320-65033339 None:intergenic 35.0%
!! ATTTTCTTGTCTGGTTTCCA+AGG + chr7_2:65033335-65033354 Msa1069440:intron 35.0%
!! TTTTCTTGTCTGGTTTCCAA+GGG + chr7_2:65033336-65033355 Msa1069440:intron 35.0%
TATCCGACCATTTGACTAAA+AGG + chr7_2:65033493-65033512 Msa1069440:intron 35.0%
! TGTCCTTTTAGTCAAATGGT+CGG - chr7_2:65033499-65033518 None:intergenic 35.0%
!! AATCAATGGATTGCCATAGA+AGG - chr7_2:65033581-65033600 None:intergenic 35.0%
TCAAACCAACAGCCATAATA+GGG - chr7_2:65033827-65033846 None:intergenic 35.0%
! ACTATCCCTTCTAAAGATTG+AGG - chr7_2:65033917-65033936 None:intergenic 35.0%
! TCAATCTTTAGAAGGGATAG+TGG + chr7_2:65033916-65033935 Msa1069440:intron 35.0%
TTTAAATCACGCTTACTGCT+GGG + chr7_2:65034085-65034104 Msa1069440:intron 35.0%
TAATGCATCTACATGAAGTG+AGG - chr7_2:65034176-65034195 None:intergenic 35.0%
!!! TTTTTTACCTGGAGTTGTGT+TGG + chr7_2:65034256-65034275 Msa1069440:intron 35.0%
GATATATCAATTCTCTCGCA+CGG - chr7_2:65034454-65034473 None:intergenic 35.0%
TGGACAACAAGCTAATTACA+CGG - chr7_2:65034546-65034565 None:intergenic 35.0%
!! TTTAACTGAGTTTTTGGAGG+TGG - chr7_2:65034742-65034761 None:intergenic 35.0%
ATCAACTGCTGTATGAGTTA+TGG + chr7_2:65034822-65034841 Msa1069440:exon 35.0%
TCAACTGCTGTATGAGTTAT+GGG + chr7_2:65034823-65034842 Msa1069440:exon 35.0%
! TAATACTTGTTGGAGGTGAT+AGG - chr7_2:65034892-65034911 None:intergenic 35.0%
TCACCTCCAACAAGTATTAA+AGG + chr7_2:65034893-65034912 Msa1069440:three_prime_UTR 35.0%
CACCTCCAACAAGTATTAAA+GGG + chr7_2:65034894-65034913 Msa1069440:three_prime_UTR 35.0%
! ATCCCTTTAATACTTGTTGG+AGG - chr7_2:65034899-65034918 None:intergenic 35.0%
CATACAACCTCATGACATAT+GGG - chr7_2:65035033-65035052 None:intergenic 35.0%
TCATACAACCTCATGACATA+TGG - chr7_2:65035034-65035053 None:intergenic 35.0%
!!! CTGTCGTTTTAAATGGAGAA+AGG - chr7_2:65035064-65035083 None:intergenic 35.0%
TTGTTGGAGTTGAAGGTTAG+TGG - chr7_2:65029595-65029614 None:intergenic 40.0%
TGTCTTCTTGTTGGAGTTGA+AGG - chr7_2:65029602-65029621 None:intergenic 40.0%
AGCCAGTTAGAGGATAAAGT+GGG - chr7_2:65029709-65029728 None:intergenic 40.0%
AAGCCAGTTAGAGGATAAAG+TGG - chr7_2:65029710-65029729 None:intergenic 40.0%
!! CGGTTTTGGCAGATAAATCA+TGG - chr7_2:65029738-65029757 None:intergenic 40.0%
!! GTGAGTGCTTCATAGTTTTG+TGG - chr7_2:65029952-65029971 None:intergenic 40.0%
CTGACACTCTGACATGTTAA+CGG + chr7_2:65029990-65030009 Msa1069440:intron 40.0%
TCAAGGACAGATTAATCTGG+GGG - chr7_2:65030176-65030195 None:intergenic 40.0%
CTCAAGGACAGATTAATCTG+GGG - chr7_2:65030177-65030196 None:intergenic 40.0%
GCTCAAGGACAGATTAATCT+GGG - chr7_2:65030178-65030197 None:intergenic 40.0%
AAAACTCAGTATCAGGCTCA+AGG - chr7_2:65030193-65030212 None:intergenic 40.0%
! TGTCTGGTACATGTCAGTTT+TGG - chr7_2:65030238-65030257 None:intergenic 40.0%
! ATTCTAATCGAAAGCGTGTC+TGG - chr7_2:65030254-65030273 None:intergenic 40.0%
AGCACCAACATCATGAAGAA+TGG + chr7_2:65030288-65030307 Msa1069440:intron 40.0%
AATGGACAAATAGGGGGAAA+AGG + chr7_2:65030306-65030325 Msa1069440:intron 40.0%
!! GTGGTTTCATTTTGAAGAGG+TGG + chr7_2:65030427-65030446 Msa1069440:intron 40.0%
!! GAGACAATGTTTGCTGTTGT+TGG - chr7_2:65030603-65030622 None:intergenic 40.0%
GACAGTGACTTGATTGATGT+CGG - chr7_2:65030726-65030745 None:intergenic 40.0%
! ACAGTATCGTCGATTGTCAT+TGG + chr7_2:65030786-65030805 Msa1069440:intron 40.0%
CAAACACACAATCAGATACC+AGG - chr7_2:65030871-65030890 None:intergenic 40.0%
!! TATTTGCACTTGACTTGTCG+TGG + chr7_2:65031077-65031096 Msa1069440:intron 40.0%
AAACGCAGTGATGTCAAACA+TGG - chr7_2:65031351-65031370 None:intergenic 40.0%
GTTTAGTGATTCTCTGCTTG+TGG + chr7_2:65031416-65031435 Msa1069440:intron 40.0%
!! TTTTGTTTACCGTTCCATGC+AGG + chr7_2:65031583-65031602 Msa1069440:intron 40.0%
TGATGCCATGAAGTTATGCA+AGG + chr7_2:65031618-65031637 Msa1069440:CDS 40.0%
ATCTGCCTTGCATAACTTCA+TGG - chr7_2:65031626-65031645 None:intergenic 40.0%
TCAAAACCGGAGGATATAAG+TGG - chr7_2:65031794-65031813 None:intergenic 40.0%
! GGTCTGAAGTTTGTTTGTCA+TGG + chr7_2:65031833-65031852 Msa1069440:intron 40.0%
! AAGTATGTGCGGAGAAGTAT+GGG + chr7_2:65031913-65031932 Msa1069440:intron 40.0%
AGATTTAACGCAATCATGCC+GGG - chr7_2:65032031-65032050 None:intergenic 40.0%
CAGATTTAACGCAATCATGC+CGG - chr7_2:65032032-65032051 None:intergenic 40.0%
AAAAGCCACTTGTGACATTG+TGG + chr7_2:65032158-65032177 Msa1069440:intron 40.0%
GGTAGGCTACATGAATCAAA+CGG - chr7_2:65032429-65032448 None:intergenic 40.0%
TAGGAGTTCTCTTAGATGAG+TGG - chr7_2:65032818-65032837 None:intergenic 40.0%
ACCAGGAATATTTACTGAGG+GGG - chr7_2:65032952-65032971 None:intergenic 40.0%
GGAACCAGGAATATTTACTG+AGG - chr7_2:65032955-65032974 None:intergenic 40.0%
ACTGACTATGAAGTCGTGAT+GGG - chr7_2:65033004-65033023 None:intergenic 40.0%
AACTGACTATGAAGTCGTGA+TGG - chr7_2:65033005-65033024 None:intergenic 40.0%
TTTGTACTAGCAAGTGACAG+CGG - chr7_2:65033046-65033065 None:intergenic 40.0%
TTTGTTCTGTTCATCTCGTC+AGG + chr7_2:65033136-65033155 Msa1069440:intron 40.0%
TTGTTCTGTTCATCTCGTCA+GGG + chr7_2:65033137-65033156 Msa1069440:intron 40.0%
ACAAGGAAACACTGTTTCAG+GGG - chr7_2:65033202-65033221 None:intergenic 40.0%
! TGGTCTTTTGCACACTACAA+TGG + chr7_2:65033278-65033297 Msa1069440:intron 40.0%
AAATAAAGCCAGCGCAATAG+GGG - chr7_2:65033319-65033338 None:intergenic 40.0%
GAAAATAAAGCCAGCGCAAT+AGG - chr7_2:65033321-65033340 None:intergenic 40.0%
!!! GCTGGCTTTATTTTCTTGTC+TGG + chr7_2:65033326-65033345 Msa1069440:intron 40.0%
TTCGCTATCCTTTGTGTTCT+CGG + chr7_2:65033381-65033400 Msa1069440:intron 40.0%
GCAGTTCATCTATCTTGTCA+GGG + chr7_2:65033404-65033423 Msa1069440:intron 40.0%
CAGTTCATCTATCTTGTCAG+GGG + chr7_2:65033405-65033424 Msa1069440:intron 40.0%
CAAAAACCACATCTCATCAG+CGG - chr7_2:65033463-65033482 None:intergenic 40.0%
! GCTGATGAGATGTGGTTTTT+GGG + chr7_2:65033462-65033481 Msa1069440:intron 40.0%
AAAGCTGATGCACAGTTAGT+TGG + chr7_2:65033555-65033574 Msa1069440:intron 40.0%
ATATCGCAGCATGTTTCGTA+CGG - chr7_2:65033627-65033646 None:intergenic 40.0%
ACGAAACATGCTGCGATATT+TGG + chr7_2:65033628-65033647 Msa1069440:intron 40.0%
CGAAACATGCTGCGATATTT+GGG + chr7_2:65033629-65033648 Msa1069440:intron 40.0%
TATTCAGCGTCTCTATGATG+TGG + chr7_2:65033680-65033699 Msa1069440:intron 40.0%
TTGAGTTCAAGTGGGAGATT+GGG - chr7_2:65033801-65033820 None:intergenic 40.0%
TGAACTCAAGTGCCCTATTA+TGG + chr7_2:65033812-65033831 Msa1069440:intron 40.0%
CTCAAACCAACAGCCATAAT+AGG - chr7_2:65033828-65033847 None:intergenic 40.0%
TCACCTCCTCAATCTTTAGA+AGG + chr7_2:65033908-65033927 Msa1069440:intron 40.0%
! CACCTCCTCAATCTTTAGAA+GGG + chr7_2:65033909-65033928 Msa1069440:intron 40.0%
! ATCCCTTCTAAAGATTGAGG+AGG - chr7_2:65033914-65033933 None:intergenic 40.0%
!! GATCTTCCCTTGCTTTTAGA+GGG - chr7_2:65033944-65033963 None:intergenic 40.0%
!! AGATCTTCCCTTGCTTTTAG+AGG - chr7_2:65033945-65033964 None:intergenic 40.0%
! CAACATCACTTGAGCTTTGT+AGG - chr7_2:65033972-65033991 None:intergenic 40.0%
CTTTAAATCACGCTTACTGC+TGG + chr7_2:65034084-65034103 Msa1069440:intron 40.0%
TTAAATCACGCTTACTGCTG+GGG + chr7_2:65034086-65034105 Msa1069440:intron 40.0%
TGTGCAGATTGAATTGGACA+CGG + chr7_2:65034609-65034628 Msa1069440:intron 40.0%
!! GTTATTGATGACGGAAAACC+AGG + chr7_2:65034688-65034707 Msa1069440:CDS 40.0%
TATGAGTTATGGGACAAGCA+AGG + chr7_2:65034833-65034852 Msa1069440:exon 40.0%
!!! GTAGCAGCTGTCGTTTTAAA+TGG - chr7_2:65035071-65035090 None:intergenic 40.0%
AAAAGGGTCACTGTTCCCAT+TGG + chr7_2:65029480-65029499 Msa1069440:five_prime_UTR 45.0%
GGTTAGTGGCAAACATGTTG+AGG - chr7_2:65029581-65029600 None:intergenic 45.0%
GACCCACTTTATCCTCTAAC+TGG + chr7_2:65029704-65029723 Msa1069440:CDS 45.0%
ATGGGAAACAAGCCAGTTAG+AGG - chr7_2:65029719-65029738 None:intergenic 45.0%
TCTTCGAATTTGGGAAGCCA+TGG - chr7_2:65029766-65029785 None:intergenic 45.0%
! TCTTTGACGGAGAAGCATGT+TGG - chr7_2:65029800-65029819 None:intergenic 45.0%
GCACTCCACTACTAAACGAT+GGG + chr7_2:65030144-65030163 Msa1069440:intron 45.0%
CCAATCCCATCGTTTAGTAG+TGG - chr7_2:65030152-65030171 None:intergenic 45.0%
CCACTACTAAACGATGGGAT+TGG + chr7_2:65030149-65030168 Msa1069440:intron 45.0%
GGCTCAAGGACAGATTAATC+TGG - chr7_2:65030179-65030198 None:intergenic 45.0%
AGACCACCTTCATAAGTGGT+CGG + chr7_2:65030523-65030542 Msa1069440:intron 45.0%
CTACGATGGACCACTTATGA+AGG - chr7_2:65030553-65030572 None:intergenic 45.0%
!! ATACCAGGTGAGTTCTAAGG+TGG - chr7_2:65030856-65030875 None:intergenic 45.0%
CAGATACCAGGTGAGTTCTA+AGG - chr7_2:65030859-65030878 None:intergenic 45.0%
! TTGCTCAATAGCAGCTCTAG+CGG + chr7_2:65031272-65031291 Msa1069440:intron 45.0%
AAAGGCTGAAAGCTTGTGCA+TGG - chr7_2:65031382-65031401 None:intergenic 45.0%
GCTTGTGGAAACTGAGTTGT+TGG + chr7_2:65031431-65031450 Msa1069440:intron 45.0%
TTTACCGTTCCATGCAGGAA+TGG + chr7_2:65031588-65031607 Msa1069440:intron 45.0%
TTACCGTTCCATGCAGGAAT+GGG + chr7_2:65031589-65031608 Msa1069440:intron 45.0%
CATAAACTCCCATTCCTGCA+TGG - chr7_2:65031600-65031619 None:intergenic 45.0%
GACTGTCCACTTATATCCTC+CGG + chr7_2:65031785-65031804 Msa1069440:intron 45.0%
GAAGTATGTGCGGAGAAGTA+TGG + chr7_2:65031912-65031931 Msa1069440:intron 45.0%
GATTTAACGCAATCATGCCG+GGG - chr7_2:65032030-65032049 None:intergenic 45.0%
CCTGTACACTTGTGACATTG+TGG - chr7_2:65032107-65032126 None:intergenic 45.0%
CCACAATGTCACAAGTGTAC+AGG + chr7_2:65032104-65032123 Msa1069440:intron 45.0%
AAAGGACTGAGTGGCTCTTT+GGG - chr7_2:65032211-65032230 None:intergenic 45.0%
TAAAGGACTGAGTGGCTCTT+TGG - chr7_2:65032212-65032231 None:intergenic 45.0%
AAAGAGCCACTCAGTCCTTT+AGG + chr7_2:65032211-65032230 Msa1069440:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7_2:65032450-65032469 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7_2:65032451-65032470 None:intergenic 45.0%
CCAGGAATATTTACTGAGGG+GGG - chr7_2:65032951-65032970 None:intergenic 45.0%
! ACTATGAAGTCGTGATGGGA+GGG - chr7_2:65033000-65033019 None:intergenic 45.0%
ACAGAAAACATAGCAGCGGA+AGG - chr7_2:65033112-65033131 None:intergenic 45.0%
CTGCACAGAAAACATAGCAG+CGG - chr7_2:65033116-65033135 None:intergenic 45.0%
CACTGTTTCAGGGGTCAAAT+CGG - chr7_2:65033193-65033212 None:intergenic 45.0%
TCGCTATCCTTTGTGTTCTC+GGG + chr7_2:65033382-65033401 Msa1069440:intron 45.0%
GGCAGTTCATCTATCTTGTC+AGG + chr7_2:65033403-65033422 Msa1069440:intron 45.0%
! CGCTGATGAGATGTGGTTTT+TGG + chr7_2:65033461-65033480 Msa1069440:intron 45.0%
!!! GAGATGTGGTTTTTGGGTCA+AGG + chr7_2:65033468-65033487 Msa1069440:intron 45.0%
!! CACAGTTAGTTGGCCTTCTA+TGG + chr7_2:65033565-65033584 Msa1069440:intron 45.0%
CTTGAGTTCAAGTGGGAGAT+TGG - chr7_2:65033802-65033821 None:intergenic 45.0%
! TAGGGCACTTGAGTTCAAGT+GGG - chr7_2:65033809-65033828 None:intergenic 45.0%
! ATAGGGCACTTGAGTTCAAG+TGG - chr7_2:65033810-65033829 None:intergenic 45.0%
AAGTGCCCTATTATGGCTGT+TGG + chr7_2:65033819-65033838 Msa1069440:intron 45.0%
!! TGGCTGTTGGTTTGAGCATT+CGG + chr7_2:65033832-65033851 Msa1069440:intron 45.0%
! AGTGGTTCCCTCTAAAAGCA+AGG + chr7_2:65033934-65033953 Msa1069440:intron 45.0%
! GTGGTTCCCTCTAAAAGCAA+GGG + chr7_2:65033935-65033954 Msa1069440:intron 45.0%
!!! GCATTTTGGTTAGCGTGTCT+GGG - chr7_2:65034042-65034061 None:intergenic 45.0%
!!! TGCATTTTGGTTAGCGTGTC+TGG - chr7_2:65034043-65034062 None:intergenic 45.0%
! GTAAGCGTGATTTAAAGCCG+TGG - chr7_2:65034081-65034100 None:intergenic 45.0%
!! CTATTTCTGCTTGGGTTGGA+AGG + chr7_2:65034109-65034128 Msa1069440:intron 45.0%
TACAGGAAAACCTGAAGAGC+AGG + chr7_2:65034508-65034527 Msa1069440:CDS 45.0%
CCATGGGAAGCGAAAGAATA+CGG + chr7_2:65034652-65034671 Msa1069440:CDS 45.0%
GGAAGCGAAAGAATACGGTT+TGG + chr7_2:65034657-65034676 Msa1069440:CDS 45.0%
TAAGAAGAAACTCCCCTCAG+AGG + chr7_2:65034795-65034814 Msa1069440:CDS 45.0%
! CAGTTGATGTTTCCTCTGAG+GGG - chr7_2:65034810-65034829 None:intergenic 45.0%
! GCAGTTGATGTTTCCTCTGA+GGG - chr7_2:65034811-65034830 None:intergenic 45.0%
! AGCAGTTGATGTTTCCTCTG+AGG - chr7_2:65034812-65034831 None:intergenic 45.0%
! AAGCCATGGAGAAGCGGTTT+TGG - chr7_2:65029752-65029771 None:intergenic 50.0%
TTTGGGAAGCCATGGAGAAG+CGG - chr7_2:65029758-65029777 None:intergenic 50.0%
! CAGAGTGTCAGTGTCGTATC+TGG - chr7_2:65029981-65030000 None:intergenic 50.0%
GGCACTCCACTACTAAACGA+TGG + chr7_2:65030143-65030162 Msa1069440:intron 50.0%
CGATGGACCACTTATGAAGG+TGG - chr7_2:65030550-65030569 None:intergenic 50.0%
AGTAGGCGGACAACCTATGA+AGG + chr7_2:65030826-65030845 Msa1069440:intron 50.0%
CTAAGGTGGACCACCTTCAT+AGG - chr7_2:65030842-65030861 None:intergenic 50.0%
CCAGCAGTAATAGAACCACC+AGG - chr7_2:65031008-65031027 None:intergenic 50.0%
! CCTGGTGGTTCTATTACTGC+TGG + chr7_2:65031005-65031024 Msa1069440:CDS 50.0%
ACTCCCATTCCTGCATGGAA+CGG - chr7_2:65031595-65031614 None:intergenic 50.0%
GATGTGTCTACCGTTTGCCT+TGG + chr7_2:65031643-65031662 Msa1069440:CDS 50.0%
TGCTGCAAGTCCAAGGCAAA+CGG - chr7_2:65031656-65031675 None:intergenic 50.0%
CTTGGACTTGCAGCATCCAT+GGG + chr7_2:65031661-65031680 Msa1069440:CDS 50.0%
GCCACTTGTGACATTGTGGT+TGG + chr7_2:65032162-65032181 Msa1069440:intron 50.0%
GCCAACCACAATGTCACAAG+TGG - chr7_2:65032166-65032185 None:intergenic 50.0%
AAGGACTGAGTGGCTCTTTG+GGG - chr7_2:65032210-65032229 None:intergenic 50.0%
TCCCAACTGCTCTCTTACTC+AGG + chr7_2:65032277-65032296 Msa1069440:intron 50.0%
GCCTGAGTAAGAGAGCAGTT+GGG - chr7_2:65032281-65032300 None:intergenic 50.0%
TGCCTGAGTAAGAGAGCAGT+TGG - chr7_2:65032282-65032301 None:intergenic 50.0%
AACTGCTCTCTTACTCAGGC+AGG + chr7_2:65032281-65032300 Msa1069440:intron 50.0%
ATGTAGCCTACCCCACTTAG+TGG + chr7_2:65032437-65032456 Msa1069440:intron 50.0%
TGTAGCCTACCCCACTTAGT+GGG + chr7_2:65032438-65032457 Msa1069440:intron 50.0%
CTTATCCCACTAAGTGGGGT+AGG - chr7_2:65032446-65032465 None:intergenic 50.0%
CTACCCCACTTAGTGGGATA+AGG + chr7_2:65032444-65032463 Msa1069440:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7_2:65032452-65032471 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7_2:65032449-65032468 Msa1069440:intron 50.0%
CCCCCCTCAGTAAATATTCC+TGG + chr7_2:65032948-65032967 Msa1069440:intron 50.0%
! CTATGAAGTCGTGATGGGAG+GGG - chr7_2:65032999-65033018 None:intergenic 50.0%
! GACTATGAAGTCGTGATGGG+AGG - chr7_2:65033001-65033020 None:intergenic 50.0%
GAAAACATAGCAGCGGAAGG+TGG - chr7_2:65033109-65033128 None:intergenic 50.0%
AGGGAATCCTCTTTCCGATG+TGG + chr7_2:65033156-65033175 Msa1069440:intron 50.0%
GGGAATCCTCTTTCCGATGT+GGG + chr7_2:65033157-65033176 Msa1069440:intron 50.0%
GGAATCCTCTTTCCGATGTG+GGG + chr7_2:65033158-65033177 Msa1069440:intron 50.0%
GAATCCTCTTTCCGATGTGG+GGG + chr7_2:65033159-65033178 Msa1069440:intron 50.0%
TTTCAGGGGTCAAATCGGAC+GGG - chr7_2:65033188-65033207 None:intergenic 50.0%
GTTTCAGGGGTCAAATCGGA+CGG - chr7_2:65033189-65033208 None:intergenic 50.0%
TGAACTGCCCGAGAACACAA+AGG - chr7_2:65033392-65033411 None:intergenic 50.0%
!! CAGCGGATTGCTAATCCACA+TGG - chr7_2:65033446-65033465 None:intergenic 50.0%
AGCAATCCGCTGATGAGATG+TGG + chr7_2:65033454-65033473 Msa1069440:intron 50.0%
CTGGAGCAGAACTTGAGCAT+TGG + chr7_2:65033529-65033548 Msa1069440:intron 50.0%
!! TTTTGGTTAGCGTGTCTGGG+AGG - chr7_2:65034039-65034058 None:intergenic 50.0%
! GGTGAAGCTGGGTTGCATTT+TGG - chr7_2:65034056-65034075 None:intergenic 50.0%
! GCGTGATTTAAAGCCGTGGA+TGG - chr7_2:65034077-65034096 None:intergenic 50.0%
!! TGCTGGGGCTATTTCTGCTT+GGG + chr7_2:65034101-65034120 Msa1069440:intron 50.0%
GGAAAACCTGAAGAGCAGGT+TGG + chr7_2:65034512-65034531 Msa1069440:intron 50.0%
CCATATCCAACCTGCTCTTC+AGG - chr7_2:65034521-65034540 None:intergenic 50.0%
! CCTGAAGAGCAGGTTGGATA+TGG + chr7_2:65034518-65034537 Msa1069440:intron 50.0%
CCGTATTCTTTCGCTTCCCA+TGG - chr7_2:65034655-65034674 None:intergenic 50.0%
GCAATTGGAGCAACTAGTCC+TGG - chr7_2:65034709-65034728 None:intergenic 50.0%
TAGCAACGTGTAGGTGGTGT+GGG - chr7_2:65035093-65035112 None:intergenic 50.0%
TTAGCAACGTGTAGGTGGTG+TGG - chr7_2:65035094-65035113 None:intergenic 50.0%
TGTGGTTAGCAACGTGTAGG+TGG - chr7_2:65035099-65035118 None:intergenic 50.0%
TGGTGTGGTTAGCAACGTGT+AGG - chr7_2:65035102-65035121 None:intergenic 50.0%
GGGAATTAGTTGCAGTGGTG+TGG - chr7_2:65035117-65035136 None:intergenic 50.0%
CTGCCAAAACCGCTTCTCCA+TGG + chr7_2:65029746-65029765 Msa1069440:CDS 55.0%
AACCCGGTGCACTAAAGCTC+CGG + chr7_2:65030047-65030066 Msa1069440:intron 55.0%
! ATGCCGGAGCTTTAGTGCAC+CGG - chr7_2:65030053-65030072 None:intergenic 55.0%
GTGCACTAAAGCTCCGGCAT+AGG + chr7_2:65030053-65030072 Msa1069440:intron 55.0%
ACTAAAGCTCCGGCATAGGC+AGG + chr7_2:65030057-65030076 Msa1069440:intron 55.0%
CTAAAGCTCCGGCATAGGCA+GGG + chr7_2:65030058-65030077 Msa1069440:intron 55.0%
GGTCCGACCACTTATGAAGG+TGG - chr7_2:65030529-65030548 None:intergenic 55.0%
GGTGGTCCGACCACTTATGA+AGG - chr7_2:65030532-65030551 None:intergenic 55.0%
GGTCGGACCACCTTCATAAG+TGG + chr7_2:65030540-65030559 Msa1069440:intron 55.0%
AGGCGGACAACCTATGAAGG+TGG + chr7_2:65030829-65030848 Msa1069440:intron 55.0%
GGTCCACCTTAGAACTCACC+TGG + chr7_2:65030850-65030869 Msa1069440:intron 55.0%
AAACAGCGGCTACAGCGTAG+TGG + chr7_2:65031199-65031218 Msa1069440:intron 55.0%
CCATGGATGCTGCAAGTCCA+AGG - chr7_2:65031663-65031682 None:intergenic 55.0%
CCTTGGACTTGCAGCATCCA+TGG + chr7_2:65031660-65031679 Msa1069440:CDS 55.0%
AGCAAGGAGGAATGCACCCA+TGG - chr7_2:65031680-65031699 None:intergenic 55.0%
CTCCTTGCTGCTGGTACGAA+GGG + chr7_2:65031691-65031710 Msa1069440:CDS 55.0%
TCCTTGCTGCTGGTACGAAG+GGG + chr7_2:65031692-65031711 Msa1069440:CDS 55.0%
! GTGCGGAGAAGTATGGGATG+TGG + chr7_2:65031919-65031938 Msa1069440:intron 55.0%
! CTCTTTGGGGGGTAGCACTT+GGG - chr7_2:65032197-65032216 None:intergenic 55.0%
AGGACTGAGTGGCTCTTTGG+GGG - chr7_2:65032209-65032228 None:intergenic 55.0%
CCACTCAGTCCTTTAGGCAG+CGG + chr7_2:65032217-65032236 Msa1069440:intron 55.0%
AGAGGCTTTCCGCTGCCTAA+AGG - chr7_2:65032229-65032248 None:intergenic 55.0%
CAAGTGACAGCGGTGCTTAG+GGG - chr7_2:65033036-65033055 None:intergenic 55.0%
GCAAGTGACAGCGGTGCTTA+GGG - chr7_2:65033037-65033056 None:intergenic 55.0%
AGCAAGTGACAGCGGTGCTT+AGG - chr7_2:65033038-65033057 None:intergenic 55.0%
GGCACATGACCTTCAAGCAC+CGG - chr7_2:65033088-65033107 None:intergenic 55.0%
TTTGTAGACGCTGCTGCCCT+TGG - chr7_2:65033355-65033374 None:intergenic 55.0%
CAACCCAGCTTCACCATCCA+CGG + chr7_2:65034061-65034080 Msa1069440:intron 55.0%
AAGCCGTGGATGGTGAAGCT+GGG - chr7_2:65034067-65034086 None:intergenic 55.0%
AAAGCCGTGGATGGTGAAGC+TGG - chr7_2:65034068-65034087 None:intergenic 55.0%
!! CTGCTGGGGCTATTTCTGCT+TGG + chr7_2:65034100-65034119 Msa1069440:intron 55.0%
!! GGGGCTATTTCTGCTTGGGT+TGG + chr7_2:65034105-65034124 Msa1069440:intron 55.0%
CAGATGGCCAACACAACTCC+AGG - chr7_2:65034266-65034285 None:intergenic 55.0%
GGTGGCGTTGCATCTGCAAT+TGG - chr7_2:65034724-65034743 None:intergenic 55.0%
! TGCCGGAGCTTTAGTGCACC+GGG - chr7_2:65030052-65030071 None:intergenic 60.0%
GGTGCATTCCTCCTTGCTGC+TGG + chr7_2:65031682-65031701 Msa1069440:CDS 60.0%
CCTTCGTACCAGCAGCAAGG+AGG - chr7_2:65031693-65031712 None:intergenic 60.0%
CCTCCTTGCTGCTGGTACGA+AGG + chr7_2:65031690-65031709 Msa1069440:CDS 60.0%
TCCCCTTCGTACCAGCAGCA+AGG - chr7_2:65031696-65031715 None:intergenic 60.0%
CTGCTGGTACGAAGGGGAAG+AGG + chr7_2:65031698-65031717 Msa1069440:CDS 60.0%
CATCAACCTCTCGGGTCTGC+TGG + chr7_2:65031751-65031770 Msa1069440:CDS 60.0%
TTTCCACCAGCAGACCCGAG+AGG - chr7_2:65031760-65031779 None:intergenic 60.0%
! GCTCTTTGGGGGGTAGCACT+TGG - chr7_2:65032198-65032217 None:intergenic 60.0%
GGACTGAGTGGCTCTTTGGG+GGG - chr7_2:65032208-65032227 None:intergenic 60.0%
CCGCTGCCTAAAGGACTGAG+TGG - chr7_2:65032220-65032239 None:intergenic 60.0%
TCCTGGTTCCATCCCTGCCT+AGG + chr7_2:65032965-65032984 Msa1069440:intron 60.0%
ACCTAGGCAGGGATGGAACC+AGG - chr7_2:65032969-65032988 None:intergenic 60.0%
CCATCCCTGCCTAGGTGTCA+CGG + chr7_2:65032973-65032992 Msa1069440:intron 60.0%
GACAGCGGTGCTTAGGGGAA+TGG - chr7_2:65033031-65033050 None:intergenic 60.0%
GACAACAAGTTTGCCGGCGC+CGG + chr7_2:65033066-65033085 Msa1069440:intron 60.0%
GCAACCCCCACATCGGAAAG+AGG - chr7_2:65033166-65033185 None:intergenic 60.0%
TGGTTAGCGTGTCTGGGAGG+AGG - chr7_2:65034036-65034055 None:intergenic 60.0%
TTCCCGGACCCTGCCTATGC+CGG - chr7_2:65030069-65030088 None:intergenic 65.0%
GCATAGGCAGGGTCCGGGAA+GGG + chr7_2:65030069-65030088 Msa1069440:intron 65.0%
CAACCTCTCGGGTCTGCTGG+TGG + chr7_2:65031754-65031773 Msa1069440:CDS 65.0%
CCGTGACACCTAGGCAGGGA+TGG - chr7_2:65032976-65032995 None:intergenic 65.0%
!! TGACCTTCAAGCACCGGCGC+CGG - chr7_2:65033082-65033101 None:intergenic 65.0%
CCAGCGCAATAGGGGCTGAC+TGG - chr7_2:65033311-65033330 None:intergenic 65.0%
CCAGTCAGCCCCTATTGCGC+TGG + chr7_2:65033308-65033327 Msa1069440:intron 65.0%
GCTCCGGCATAGGCAGGGTC+CGG + chr7_2:65030063-65030082 Msa1069440:intron 70.0%
CTCCGGCATAGGCAGGGTCC+GGG + chr7_2:65030064-65030083 Msa1069440:intron 70.0%
GGCATAGGCAGGGTCCGGGA+AGG + chr7_2:65030068-65030087 Msa1069440:intron 70.0%
GGGGCCGTGACACCTAGGCA+GGG - chr7_2:65032980-65032999 None:intergenic 70.0%
AGGGGCCGTGACACCTAGGC+AGG - chr7_2:65032981-65033000 None:intergenic 70.0%
TGGGAGGGGCCGTGACACCT+AGG - chr7_2:65032985-65033004 None:intergenic 70.0%
!! TTGCCGGCGCCGGTGCTTGA+AGG + chr7_2:65033076-65033095 Msa1069440:intron 70.0%
CGGACGGGCAACCCCCACAT+CGG - chr7_2:65033173-65033192 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 65029480 65035137 65029480 ID=Msa1069440;Name=Msa1069440
chr7_2 mRNA 65029480 65035137 65029480 ID=Msa1069440-mRNA-1;Parent=Msa1069440;Name=Msa1069440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=82|1|1|1|1|1|5|300|295
chr7_2 exon 65029480 65029840 65029480 ID=Msa1069440-mRNA-1:exon:13631;Parent=Msa1069440-mRNA-1
chr7_2 exon 65030912 65031026 65030912 ID=Msa1069440-mRNA-1:exon:13632;Parent=Msa1069440-mRNA-1
chr7_2 exon 65031605 65031780 65031605 ID=Msa1069440-mRNA-1:exon:13633;Parent=Msa1069440-mRNA-1
chr7_2 exon 65034434 65034529 65034434 ID=Msa1069440-mRNA-1:exon:13634;Parent=Msa1069440-mRNA-1
chr7_2 exon 65034616 65035137 65034616 ID=Msa1069440-mRNA-1:exon:13635;Parent=Msa1069440-mRNA-1
chr7_2 five_prime_UTR 65029480 65029561 65029480 ID=Msa1069440-mRNA-1:five_prime_utr;Parent=Msa1069440-mRNA-1
chr7_2 CDS 65029562 65029840 65029562 ID=Msa1069440-mRNA-1:cds;Parent=Msa1069440-mRNA-1
chr7_2 CDS 65030912 65031026 65030912 ID=Msa1069440-mRNA-1:cds;Parent=Msa1069440-mRNA-1
chr7_2 CDS 65031605 65031780 65031605 ID=Msa1069440-mRNA-1:cds;Parent=Msa1069440-mRNA-1
chr7_2 CDS 65034434 65034529 65034434 ID=Msa1069440-mRNA-1:cds;Parent=Msa1069440-mRNA-1
chr7_2 CDS 65034616 65034837 65034616 ID=Msa1069440-mRNA-1:cds;Parent=Msa1069440-mRNA-1
chr7_2 three_prime_UTR 65034838 65035137 65034838 ID=Msa1069440-mRNA-1:three_prime_utr;Parent=Msa1069440-mRNA-1
Gene Sequence

>Msa1069440

ATGGAAGTGAGTTTAGCCTCAACATGTTTGCCACTAACCTTCAACTCCAACAAGAAGACATTGTTAAACAATAACAATAACATTTTCCACTCTCAAATTCCATTTTCAACCAAACAAAGAACAACAATCGTTAACTCTATCAGACCCACTTTATCCTCTAACTGGCTTGTTTCCCATGATTTATCTGCCAAAACCGCTTCTCCATGGCTTCCCAAATTCGAAGAGCTTGATACTACCAACATGCTTCTCCGTCAAAGAATTGTTTTTTTGGGTTCTCAGGTGGATGATATGACTGCAGATTTTGTGATTAGTCAGCTTTTGTTTTTGGATGCTGATGATCCTACCAAAGATATCAAGTTGTTTATTAATTCACCTGGTGGTTCTATTACTGCTGGAATGGGAGTTTATGATGCCATGAAGTTATGCAAGGCAGATGTGTCTACCGTTTGCCTTGGACTTGCAGCATCCATGGGTGCATTCCTCCTTGCTGCTGGTACGAAGGGGAAGAGGTATTGTATGCCGAATTCCAGAGTTATGATTCATCAACCTCTCGGGTCTGCTGGTGGAAAAGCTACAGAGATGAGTATCCGTGCGAGAGAATTGATATATCACAAGATTAAGATAAACAAGATACTATCAAGAATTACAGGAAAACCTGAAGAGCAGATTGAATTGGACACGGATCGTGATAATTTTATGAATCCATGGGAAGCGAAAGAATACGGTTTGGTTGATGATGTTATTGATGACGGAAAACCAGGACTAGTTGCTCCAATTGCAGATGCAACGCCACCTCCAAAAACTCAGTTAAAGAATATATGGGAAATTGAAGGAAACTCAAAAGGTAAGAAGAAACTCCCCTCAGAGGAAACATCAACTGCTGTATGA

Protein sequence

>Msa1069440

MEVSLASTCLPLTFNSNKKTLLNNNNNIFHSQIPFSTKQRTTIVNSIRPTLSSNWLVSHDLSAKTASPWLPKFEELDTTNMLLRQRIVFLGSQVDDMTADFVISQLLFLDADDPTKDIKLFINSPGGSITAGMGVYDAMKLCKADVSTVCLGLAASMGAFLLAAGTKGKRYCMPNSRVMIHQPLGSAGGKATEMSIRARELIYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDDVIDDGKPGLVAPIADATPPPKTQLKNIWEIEGNSKGKKKLPSEETSTAV*