Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618510 | XP_003630151.2 | 82.209 | 326 | 28 | 3 | 4 | 300 | 249 | 573 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618510 | sp|Q9FPS0|UBP27_ARATH | 34.812 | 293 | 136 | 5 | 5 | 297 | 257 | 494 | 1.22e-45 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0618510 | -0.808638 | 2.806840e-50 | -8.615850e-47 |
| Msa0073480 | Msa0618510 | 0.801291 | 9.648668e-49 | -8.615850e-47 |
| Msa0119850 | Msa0618510 | 0.802991 | 4.314537e-49 | -8.615850e-47 |
| Msa0618510 | Msa0734660 | 0.815810 | 7.637640e-52 | -8.615850e-47 |
| Msa0618510 | Msa0743260 | 0.805854 | 1.091855e-49 | -8.615850e-47 |
| Msa0618510 | Msa0776220 | 0.828202 | 1.025066e-54 | -8.615850e-47 |
| Msa0618510 | Msa0813720 | 0.821171 | 4.653634e-53 | -8.615850e-47 |
| Msa0618510 | Msa0854120 | 0.801658 | 8.114156e-49 | -8.615850e-47 |
| Msa0618510 | Msa0944190 | 0.818464 | 1.933277e-52 | -8.615850e-47 |
| Msa0618510 | Msa1171870 | 0.808630 | 2.818047e-50 | -8.615850e-47 |
| Msa0618510 | Msa1306430 | 0.804837 | 1.783409e-49 | -8.615850e-47 |
| Msa0618510 | Msa1453780 | -0.814142 | 1.791186e-51 | -8.615850e-47 |
| Msa0173820 | Msa0618510 | 0.802476 | 5.510043e-49 | -8.615850e-47 |
| Msa0173830 | Msa0618510 | 0.823073 | 1.685313e-53 | -8.615850e-47 |
| Msa0233350 | Msa0618510 | 0.806314 | 8.734947e-50 | -8.615850e-47 |
| Msa0430620 | Msa0618510 | 0.802247 | 6.141474e-49 | -8.615850e-47 |
| Msa0465790 | Msa0618510 | 0.837727 | 4.381928e-57 | -8.615850e-47 |
| Msa0244270 | Msa0618510 | 0.801977 | 6.979824e-49 | -8.615850e-47 |
| Msa0262310 | Msa0618510 | 0.800160 | 1.641667e-48 | -8.615850e-47 |
| Msa0547360 | Msa0618510 | 0.805946 | 1.043957e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618510 | MtrunA17_Chr8g0383491 | 82.209 | 326 | 28 | 3 | 4 | 300 | 222 | 546 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618510 | AT4G39370.3 | 35.254 | 295 | 143 | 5 | 5 | 297 | 257 | 505 | 1.67e-48 | 169 |
| Msa0618510 | AT4G39370.1 | 34.812 | 293 | 136 | 5 | 5 | 297 | 257 | 494 | 1.24e-46 | 164 |
| Msa0618510 | AT1G04860.1 | 30.573 | 157 | 73 | 5 | 164 | 297 | 814 | 957 | 9.63e-12 | 66.2 |
| Msa0618510 | AT2G32780.1 | 32.667 | 150 | 77 | 5 | 167 | 297 | 939 | 1083 | 6.53e-11 | 63.5 |
Find 55 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAATCTGGTGTCCTTTA+TGG | 0.111338 | 4_2:+69462098 | Msa0618510:CDS |
| CTTAATAAATTTCCTTGTTC+TGG | 0.228857 | 4_2:+69462194 | Msa0618510:CDS |
| AAAATCTACCGTGGTCAAAT+AGG | 0.299932 | 4_2:+69461297 | Msa0618510:CDS |
| AAATCAATGGAAAAGATATA+TGG | 0.354130 | 4_2:-69461956 | None:intergenic |
| AATCAAGTATCTTTCCTTGA+TGG | 0.366001 | 4_2:+69461048 | Msa0618510:CDS |
| CAGCTACAATGAACTGCTTC+AGG | 0.366039 | 4_2:-69460979 | None:intergenic |
| ATATGCATTCTGAGATAATA+AGG | 0.373359 | 4_2:+69462072 | Msa0618510:CDS |
| CAAAATTCAATGCGCTGGTT+TGG | 0.392926 | 4_2:+69463794 | Msa0618510:CDS |
| ATTTGGACCAACCGTATCAA+TGG | 0.410480 | 4_2:-69462255 | None:intergenic |
| GAATGCATATTGCCATGGTT+TGG | 0.441134 | 4_2:-69462059 | None:intergenic |
| ATAATAAGGATGATTAAATC+TGG | 0.453997 | 4_2:+69462086 | Msa0618510:CDS |
| GATCTGTAGCTCCTCCATAA+AGG | 0.458550 | 4_2:-69462112 | None:intergenic |
| ATATCAACTTGTTTCTGTTG+TGG | 0.466262 | 4_2:+69463682 | Msa0618510:CDS |
| ATCAGAGTCCTCAGATGTCT+CGG | 0.468204 | 4_2:+69463757 | Msa0618510:CDS |
| GAGGACACATCCAAAATCAA+TGG | 0.490905 | 4_2:-69461969 | None:intergenic |
| ATTGTTACTCAGGTAGAGCT+TGG | 0.495362 | 4_2:+69461215 | Msa0618510:intron |
| TCAATCAAAATTCAATGCGC+TGG | 0.497239 | 4_2:+69463789 | Msa0618510:CDS |
| TAAGTATTGCTCGGTGTCCA+AGG | 0.501510 | 4_2:+69461342 | Msa0618510:CDS |
| CTTTGATTAATAAATTTGAC+TGG | 0.502490 | 4_2:+69460924 | Msa0618510:CDS |
| ACTGCTTCAGGCATTCCTCC+AGG | 0.505916 | 4_2:-69460967 | None:intergenic |
| TAGACTAGAAGTGAAGATAC+AGG | 0.518203 | 4_2:+69462004 | Msa0618510:CDS |
| GTGGAACACTTTGGAAGAGC+TGG | 0.522881 | 4_2:+69463701 | Msa0618510:CDS |
| TAGCTCCTCCACAAGTAGAC+AGG | 0.523972 | 4_2:+69462166 | Msa0618510:CDS |
| AGGTAGAGCTTGGAAACCTT+AGG | 0.536819 | 4_2:+69461225 | Msa0618510:intron |
| TACCTTGTCTCCTTCCATCA+AGG | 0.539543 | 4_2:-69461062 | None:intergenic |
| AAGAATTGCCTGTCTACTTG+TGG | 0.554027 | 4_2:-69462174 | None:intergenic |
| GTTTCTGTTGTGGAACACTT+TGG | 0.554401 | 4_2:+69463692 | Msa0618510:CDS |
| CTTGATCAGAACATCTCCTA+AGG | 0.557836 | 4_2:-69461241 | None:intergenic |
| ACTACAACTGCAGCCACTGT+TGG | 0.558288 | 4_2:+69461014 | Msa0618510:CDS |
| CACTTTGGAAGAGCTGGAGG+AGG | 0.559479 | 4_2:+69463707 | Msa0618510:CDS |
| TGAAGCAGCTAAGTATTGCT+CGG | 0.562055 | 4_2:+69461333 | Msa0618510:CDS |
| TCTCAGAATGCATATTGCCA+TGG | 0.564265 | 4_2:-69462064 | None:intergenic |
| TCAGAGTCCTCAGATGTCTC+GGG | 0.564484 | 4_2:+69463758 | Msa0618510:CDS |
| AAGTATCTTTCCTTGATGGA+AGG | 0.564774 | 4_2:+69461052 | Msa0618510:CDS |
| GCAGAGAGTTGGCTGTACCC+TGG | 0.565613 | 4_2:+69460949 | Msa0618510:CDS |
| TTCCTTGATGGAAGGAGACA+AGG | 0.566561 | 4_2:+69461060 | Msa0618510:CDS |
| TTTGACTGGTTGCAGAGAGT+TGG | 0.566908 | 4_2:+69460938 | Msa0618510:CDS |
| TAGTCTAGTTGTCATGAATG+AGG | 0.567125 | 4_2:-69461988 | None:intergenic |
| TTATTAATCAAAGTTCCAGT+AGG | 0.569937 | 4_2:-69460914 | None:intergenic |
| CTGCTTCAGGCATTCCTCCA+GGG | 0.591382 | 4_2:-69460966 | None:intergenic |
| CTTTCTGAAGAACCAGAACA+AGG | 0.592291 | 4_2:-69462206 | None:intergenic |
| AAATCTGGTGTCCTTTATGG+AGG | 0.593550 | 4_2:+69462101 | Msa0618510:CDS |
| AGAGTCGCAATCCATTGATA+CGG | 0.605770 | 4_2:+69462244 | Msa0618510:CDS |
| CGAAGAAGTTCTGTCTGCTG+AGG | 0.612508 | 4_2:+69463850 | Msa0618510:CDS |
| CGTAACTCTTTGCCAAACCA+TGG | 0.615140 | 4_2:+69462047 | Msa0618510:CDS |
| TCTCTCATAGAAAAGCAAGC+TGG | 0.622383 | 4_2:-69463873 | None:intergenic |
| AATTGCCTGTCTACTTGTGG+AGG | 0.624851 | 4_2:-69462171 | None:intergenic |
| AAGTATTGCTCGGTGTCCAA+GGG | 0.628474 | 4_2:+69461343 | Msa0618510:CDS |
| GAACACTTTGGAAGAGCTGG+AGG | 0.655757 | 4_2:+69463704 | Msa0618510:CDS |
| GCAATCACCCGAGACATCTG+AGG | 0.666882 | 4_2:-69463765 | None:intergenic |
| TGGTGTTTCAGATTCTCACG+TGG | 0.684086 | 4_2:+69463814 | Msa0618510:CDS |
| GAGAGTTGGCTGTACCCTGG+AGG | 0.706339 | 4_2:+69460952 | Msa0618510:CDS |
| ATAACCTTGAAAATCTACCG+TGG | 0.721139 | 4_2:+69461288 | Msa0618510:CDS |
| TGTGAAAACCTATTTGACCA+CGG | 0.736768 | 4_2:-69461305 | None:intergenic |
| TTGCAGCATTATGCCAACAG+TGG | 0.738019 | 4_2:-69461027 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTTAATTCTTATATT+TGG | + | chr4_2:69462654-69462673 | Msa0618510:intron | 10.0% |
| !!! | TGTTTTTAATTCTTATATTT+GGG | + | chr4_2:69462655-69462674 | Msa0618510:intron | 10.0% |
| !!! | ATTTTGATATTGATAAAGAT+AGG | + | chr4_2:69461115-69461134 | Msa0618510:intron | 15.0% |
| !!! | AACTTTTTACTTTTTTTTTG+TGG | - | chr4_2:69461593-69461612 | None:intergenic | 15.0% |
| !!! | TTAAAAATAGTTACTAGTTT+TGG | + | chr4_2:69461819-69461838 | Msa0618510:intron | 15.0% |
| !!! | ATATACTGCTTTTTATTAAA+GGG | - | chr4_2:69461884-69461903 | None:intergenic | 15.0% |
| !!! | AATATACTGCTTTTTATTAA+AGG | - | chr4_2:69461885-69461904 | None:intergenic | 15.0% |
| !! | ATTAATCAATACAGAAAATT+TGG | - | chr4_2:69462275-69462294 | None:intergenic | 15.0% |
| !! | CTTTGATTAATAAATTTGAC+TGG | + | chr4_2:69460924-69460943 | Msa0618510:CDS | 20.0% |
| !! | ATAAATAACATAATCACACA+GGG | - | chr4_2:69461089-69461108 | None:intergenic | 20.0% |
| !! | AATAAATAACATAATCACAC+AGG | - | chr4_2:69461090-69461109 | None:intergenic | 20.0% |
| !!! | TTTCAAGGTTATAAGTTTTT+CGG | - | chr4_2:69461280-69461299 | None:intergenic | 20.0% |
| !! | TACTGAAATATTTAATTGCA+TGG | + | chr4_2:69461445-69461464 | Msa0618510:intron | 20.0% |
| !! | ACTGAAATATTTAATTGCAT+GGG | + | chr4_2:69461446-69461465 | Msa0618510:intron | 20.0% |
| !!! | TTAAATCCTCCATTTTTTTA+CGG | + | chr4_2:69461552-69461571 | Msa0618510:intron | 20.0% |
| !!! | TATTTGATTGCACTTTTAAA+TGG | + | chr4_2:69461635-69461654 | Msa0618510:intron | 20.0% |
| !!! | TGCCTAACTTTTTTAATAAA+GGG | + | chr4_2:69461690-69461709 | Msa0618510:intron | 20.0% |
| !! | TTCCCTTTATTAAAAAAGTT+AGG | - | chr4_2:69461695-69461714 | None:intergenic | 20.0% |
| !! | AAATCAATGGAAAAGATATA+TGG | - | chr4_2:69461959-69461978 | None:intergenic | 20.0% |
| !!! | TATATCTTTTCCATTGATTT+TGG | + | chr4_2:69461959-69461978 | Msa0618510:CDS | 20.0% |
| !! | ATAATAAGGATGATTAAATC+TGG | + | chr4_2:69462086-69462105 | Msa0618510:CDS | 20.0% |
| !!! | ATGCTTTATTTACAATGAAT+GGG | - | chr4_2:69462396-69462415 | None:intergenic | 20.0% |
| !!! | TATGCTTTATTTACAATGAA+TGG | - | chr4_2:69462397-69462416 | None:intergenic | 20.0% |
| !! | ATTGTAAATAAAGCATAAAC+TGG | + | chr4_2:69462400-69462419 | Msa0618510:intron | 20.0% |
| !! | TGTGATGAAAAATAATGTTT+AGG | - | chr4_2:69462459-69462478 | None:intergenic | 20.0% |
| !! | TAATATAATTAGGACGATAA+CGG | + | chr4_2:69462528-69462547 | Msa0618510:intron | 20.0% |
| !! | ATAAAGAATTGCATATGATA+GGG | - | chr4_2:69462697-69462716 | None:intergenic | 20.0% |
| !!! | TTTGTCTCTATTTTAAAGTT+AGG | + | chr4_2:69462721-69462740 | Msa0618510:intron | 20.0% |
| !!! | AAGTTTTATTGGAAAATAGA+AGG | - | chr4_2:69462883-69462902 | None:intergenic | 20.0% |
| !!! | TCTAACTTTAAAATAATGAG+AGG | + | chr4_2:69463415-69463434 | Msa0618510:intron | 20.0% |
| !!! | GAATGATCTTTAAAAATGTA+AGG | + | chr4_2:69463547-69463566 | Msa0618510:intron | 20.0% |
| ! | TTATTAATCAAAGTTCCAGT+AGG | - | chr4_2:69460917-69460936 | None:intergenic | 25.0% |
| ! | ATATTGATAAAGATAGGTGA+GGG | + | chr4_2:69461121-69461140 | Msa0618510:intron | 25.0% |
| ! | CTGAAATATTTAATTGCATG+GGG | + | chr4_2:69461447-69461466 | Msa0618510:intron | 25.0% |
| !!! | TTTACTTTTTTTTTGTGGTC+AGG | - | chr4_2:69461588-69461607 | None:intergenic | 25.0% |
| ! | AAAAAAGTAAAAAGTTCCCT+TGG | + | chr4_2:69461597-69461616 | Msa0618510:intron | 25.0% |
| !!! | CTGCCTAACTTTTTTAATAA+AGG | + | chr4_2:69461689-69461708 | Msa0618510:intron | 25.0% |
| ! | TCATAAATACAGACTACTTA+TGG | - | chr4_2:69461753-69461772 | None:intergenic | 25.0% |
| !! | GTGAATATATTTTGTCTTCA+TGG | + | chr4_2:69461923-69461942 | Msa0618510:intron | 25.0% |
| !!! | ATATGCATTCTGAGATAATA+AGG | + | chr4_2:69462072-69462091 | Msa0618510:CDS | 25.0% |
| ! | CTTAATAAATTTCCTTGTTC+TGG | + | chr4_2:69462194-69462213 | Msa0618510:CDS | 25.0% |
| !!! | AGCACATTTTAAAAGTAAAC+TGG | - | chr4_2:69462484-69462503 | None:intergenic | 25.0% |
| ! | AGCATTCTGCTAATATAATT+AGG | + | chr4_2:69462518-69462537 | Msa0618510:intron | 25.0% |
| ! | GCTTTCATTTAATAAATTCC+AGG | - | chr4_2:69462628-69462647 | None:intergenic | 25.0% |
| ! | CATAAAGAATTGCATATGAT+AGG | - | chr4_2:69462698-69462717 | None:intergenic | 25.0% |
| ! | CTATCATATGCAATTCTTTA+TGG | + | chr4_2:69462696-69462715 | Msa0618510:intron | 25.0% |
| !! | TATTTTACATGAACCATACA+TGG | - | chr4_2:69463024-69463043 | None:intergenic | 25.0% |
| ! | ACAATCAATGTTCATATACA+TGG | - | chr4_2:69463072-69463091 | None:intergenic | 25.0% |
| ! | ACGTATGTAACAATGTAAAA+CGG | + | chr4_2:69463184-69463203 | Msa0618510:intron | 25.0% |
| ! | GGATTATTACCAATTGTTAA+GGG | + | chr4_2:69463209-69463228 | Msa0618510:intron | 25.0% |
| !! | TGATCTTTAAAAATGTAAGG+AGG | + | chr4_2:69463550-69463569 | Msa0618510:intron | 25.0% |
| AATCAAGTATCTTTCCTTGA+TGG | + | chr4_2:69461048-69461067 | Msa0618510:CDS | 30.0% | |
| GATATTGATAAAGATAGGTG+AGG | + | chr4_2:69461120-69461139 | Msa0618510:intron | 30.0% | |
| ! | TATGCCTAATTTGTGTTATC+TGG | + | chr4_2:69461366-69461385 | Msa0618510:intron | 30.0% |
| ! | AGAGTTCACATGAATGATTT+TGG | + | chr4_2:69461495-69461514 | Msa0618510:intron | 30.0% |
| ! | GATTGCACTTTTAAATGGAT+TGG | + | chr4_2:69461640-69461659 | Msa0618510:intron | 30.0% |
| ! | TTTTGTCTTCATGGTGTTTT+AGG | + | chr4_2:69461932-69461951 | Msa0618510:intron | 30.0% |
| ! | TTTGTCTTCATGGTGTTTTA+GGG | + | chr4_2:69461933-69461952 | Msa0618510:intron | 30.0% |
| ATTAAATCTGGTGTCCTTTA+TGG | + | chr4_2:69462098-69462117 | Msa0618510:CDS | 30.0% | |
| TACACAGACATAAAATGCAT+GGG | - | chr4_2:69462330-69462349 | None:intergenic | 30.0% | |
| ATACACAGACATAAAATGCA+TGG | - | chr4_2:69462331-69462350 | None:intergenic | 30.0% | |
| AGACTGAGAAAGTTAACTAA+AGG | - | chr4_2:69462431-69462450 | None:intergenic | 30.0% | |
| TCAAGCATCACAACAATTAA+TGG | - | chr4_2:69462601-69462620 | None:intergenic | 30.0% | |
| !! | ATTTGGGCATGCTTTTATTT+TGG | + | chr4_2:69462671-69462690 | Msa0618510:intron | 30.0% |
| CACTAAATGGATCTCTATAA+GGG | - | chr4_2:69462762-69462781 | None:intergenic | 30.0% | |
| TCACTAAATGGATCTCTATA+AGG | - | chr4_2:69462763-69462782 | None:intergenic | 30.0% | |
| TTATAGAGATCCATTTAGTG+AGG | + | chr4_2:69462762-69462781 | Msa0618510:intron | 30.0% | |
| ATGGGATAATTAGTGATACA+TGG | - | chr4_2:69462815-69462834 | None:intergenic | 30.0% | |
| TTTCCAATAAAACTTCTAGC+TGG | + | chr4_2:69462888-69462907 | Msa0618510:intron | 30.0% | |
| ! | TTCCAATAAAACTTCTAGCT+GGG | + | chr4_2:69462889-69462908 | Msa0618510:intron | 30.0% |
| ! | ATGTATTGTGGATTAAGCAT+GGG | - | chr4_2:69462923-69462942 | None:intergenic | 30.0% |
| !! | TCATATACATGGTTCTGATT+TGG | - | chr4_2:69463061-69463080 | None:intergenic | 30.0% |
| !! | TGCTTTCTAGTTTGTCATTT+GGG | - | chr4_2:69463155-69463174 | None:intergenic | 30.0% |
| !! | TTGCTTTCTAGTTTGTCATT+TGG | - | chr4_2:69463156-69463175 | None:intergenic | 30.0% |
| TATGTAACAATGTAAAACGG+AGG | + | chr4_2:69463187-69463206 | Msa0618510:intron | 30.0% | |
| ATGTAACAATGTAAAACGGA+GGG | + | chr4_2:69463188-69463207 | Msa0618510:intron | 30.0% | |
| GGGATTATTACCAATTGTTA+AGG | + | chr4_2:69463208-69463227 | Msa0618510:intron | 30.0% | |
| GTTAGATCTAAGTGATGAAA+TGG | - | chr4_2:69463401-69463420 | None:intergenic | 30.0% | |
| AAAACCATGAAAAAGGTCAT+AGG | + | chr4_2:69463440-69463459 | Msa0618510:intron | 30.0% | |
| AAACCATGAAAAAGGTCATA+GGG | + | chr4_2:69463441-69463460 | Msa0618510:intron | 30.0% | |
| CAAACTCTTGATCAAATCTT+AGG | + | chr4_2:69463479-69463498 | Msa0618510:intron | 30.0% | |
| !! | ATATGACATTAACTTGCTTG+TGG | + | chr4_2:69463577-69463596 | Msa0618510:intron | 30.0% |
| !! | ATATCAACTTGTTTCTGTTG+TGG | + | chr4_2:69463682-69463701 | Msa0618510:CDS | 30.0% |
| AAGTATCTTTCCTTGATGGA+AGG | + | chr4_2:69461052-69461071 | Msa0618510:CDS | 35.0% | |
| !! | TGTTTTTGCCATTGTTACTC+AGG | + | chr4_2:69461205-69461224 | Msa0618510:intron | 35.0% |
| ATAACCTTGAAAATCTACCG+TGG | + | chr4_2:69461288-69461307 | Msa0618510:CDS | 35.0% | |
| AAAATCTACCGTGGTCAAAT+AGG | + | chr4_2:69461297-69461316 | Msa0618510:CDS | 35.0% | |
| TGTGAAAACCTATTTGACCA+CGG | - | chr4_2:69461308-69461327 | None:intergenic | 35.0% | |
| GATGCCAGATAACACAAATT+AGG | - | chr4_2:69461373-69461392 | None:intergenic | 35.0% | |
| TGGAGAGTCATTCAAATTAC+AGG | + | chr4_2:69461515-69461534 | Msa0618510:intron | 35.0% | |
| !!! | ACTTTTTTTTTGTGGTCAGG+AGG | - | chr4_2:69461585-69461604 | None:intergenic | 35.0% |
| TAAAAAGTTCCCTTGGCATA+AGG | + | chr4_2:69461604-69461623 | Msa0618510:intron | 35.0% | |
| TAGTCTAGTTGTCATGAATG+AGG | - | chr4_2:69461991-69462010 | None:intergenic | 35.0% | |
| TAGACTAGAAGTGAAGATAC+AGG | + | chr4_2:69462004-69462023 | Msa0618510:CDS | 35.0% | |
| CATAAAATGCATGGGTAAAC+AGG | - | chr4_2:69462322-69462341 | None:intergenic | 35.0% | |
| ! | TAACGGTACTATCTGAAATG+TGG | + | chr4_2:69462545-69462564 | Msa0618510:intron | 35.0% |
| TAAATGGATCTCTATAAGGG+TGG | - | chr4_2:69462759-69462778 | None:intergenic | 35.0% | |
| GATACATGGCAATAATAACG+CGG | - | chr4_2:69462801-69462820 | None:intergenic | 35.0% | |
| ATTCAAGATGCTAGAGGAAA+GGG | - | chr4_2:69462855-69462874 | None:intergenic | 35.0% | |
| ! | CATGTATTGTGGATTAAGCA+TGG | - | chr4_2:69462924-69462943 | None:intergenic | 35.0% |
| AAGTAGTGTGTCATGTATTG+TGG | - | chr4_2:69462935-69462954 | None:intergenic | 35.0% | |
| !! | TCTGATTTGGCAAATCGTAA+TGG | - | chr4_2:69463000-69463019 | None:intergenic | 35.0% |
| !! | AACCATACATGGTTCTGATT+TGG | - | chr4_2:69463013-69463032 | None:intergenic | 35.0% |
| ! | ATTGTTGCAGTATTTTCAGC+AGG | + | chr4_2:69463087-69463106 | Msa0618510:intron | 35.0% |
| ! | TCTAGTTTGTCATTTGGGTT+TGG | - | chr4_2:69463150-69463169 | None:intergenic | 35.0% |
| TTACAAGGACCCTTAACAAT+TGG | - | chr4_2:69463221-69463240 | None:intergenic | 35.0% | |
| ATTGTTAAGGGTCCTTGTAA+TGG | + | chr4_2:69463221-69463240 | Msa0618510:intron | 35.0% | |
| TTGTTAAGGGTCCTTGTAAT+GGG | + | chr4_2:69463222-69463241 | Msa0618510:intron | 35.0% | |
| ! | AAAGACATACTCTGGGAAAA+AGG | - | chr4_2:69463269-69463288 | None:intergenic | 35.0% |
| AGAGGCAAAAACCATGAAAA+AGG | + | chr4_2:69463433-69463452 | Msa0618510:intron | 35.0% | |
| !! | AATCCCTATGACCTTTTTCA+TGG | - | chr4_2:69463447-69463466 | None:intergenic | 35.0% |
| GAAAAAGGTCATAGGGATTA+TGG | + | chr4_2:69463448-69463467 | Msa0618510:intron | 35.0% | |
| ACATATTGTGTGCTTTATGC+AGG | + | chr4_2:69463619-69463638 | Msa0618510:intron | 35.0% | |
| TCAATCAAAATTCAATGCGC+TGG | + | chr4_2:69463789-69463808 | Msa0618510:CDS | 35.0% | |
| CAACGTAAAGAACAGTCAGT+TGG | - | chr4_2:69461174-69461193 | None:intergenic | 40.0% | |
| AAGCTCTACCTGAGTAACAA+TGG | - | chr4_2:69461216-69461235 | None:intergenic | 40.0% | |
| ATTGTTACTCAGGTAGAGCT+TGG | + | chr4_2:69461215-69461234 | Msa0618510:intron | 40.0% | |
| CTTGATCAGAACATCTCCTA+AGG | - | chr4_2:69461244-69461263 | None:intergenic | 40.0% | |
| ! | TTGACCACGGTAGATTTTCA+AGG | - | chr4_2:69461295-69461314 | None:intergenic | 40.0% |
| ! | TGAAGCAGCTAAGTATTGCT+CGG | + | chr4_2:69461333-69461352 | Msa0618510:CDS | 40.0% |
| ACACAAATTAGGCATACCCT+TGG | - | chr4_2:69461362-69461381 | None:intergenic | 40.0% | |
| ! | TCATGTGAACTCTTTTCAGC+TGG | - | chr4_2:69461488-69461507 | None:intergenic | 40.0% |
| ACGAAGCCGTAAAAAAATGG+AGG | - | chr4_2:69461561-69461580 | None:intergenic | 40.0% | |
| GGAACGAAGCCGTAAAAAAA+TGG | - | chr4_2:69461564-69461583 | None:intergenic | 40.0% | |
| GAGGACACATCCAAAATCAA+TGG | - | chr4_2:69461972-69461991 | None:intergenic | 40.0% | |
| GAATGCATATTGCCATGGTT+TGG | - | chr4_2:69462062-69462081 | None:intergenic | 40.0% | |
| TCTCAGAATGCATATTGCCA+TGG | - | chr4_2:69462067-69462086 | None:intergenic | 40.0% | |
| AAATCTGGTGTCCTTTATGG+AGG | + | chr4_2:69462101-69462120 | Msa0618510:CDS | 40.0% | |
| AAGAATTGCCTGTCTACTTG+TGG | - | chr4_2:69462177-69462196 | None:intergenic | 40.0% | |
| ! | CTTTCTGAAGAACCAGAACA+AGG | - | chr4_2:69462209-69462228 | None:intergenic | 40.0% |
| AGAGTCGCAATCCATTGATA+CGG | + | chr4_2:69462244-69462263 | Msa0618510:CDS | 40.0% | |
| ATTTGGACCAACCGTATCAA+TGG | - | chr4_2:69462258-69462277 | None:intergenic | 40.0% | |
| TCCATTTAGTGAGGATGTGA+TGG | + | chr4_2:69462771-69462790 | Msa0618510:intron | 40.0% | |
| TCCATCACATCCTCACTAAA+TGG | - | chr4_2:69462775-69462794 | None:intergenic | 40.0% | |
| TTCAAGATGCTAGAGGAAAG+GGG | - | chr4_2:69462854-69462873 | None:intergenic | 40.0% | |
| CATTCAAGATGCTAGAGGAA+AGG | - | chr4_2:69462856-69462875 | None:intergenic | 40.0% | |
| TCCTCTAGCATCTTGAATGT+AGG | + | chr4_2:69462857-69462876 | Msa0618510:intron | 40.0% | |
| !! | TGCCCAGCTAGAAGTTTTAT+TGG | - | chr4_2:69462894-69462913 | None:intergenic | 40.0% |
| TGCCAAATCAGAACCATGTA+TGG | + | chr4_2:69463008-69463027 | Msa0618510:intron | 40.0% | |
| AAAAAGCAGTGCCCATTACA+AGG | - | chr4_2:69463236-69463255 | None:intergenic | 40.0% | |
| CATTGGCAAAGACATACTCT+GGG | - | chr4_2:69463276-69463295 | None:intergenic | 40.0% | |
| ATGTCTTTGCCAATGGAGAT+AGG | + | chr4_2:69463281-69463300 | Msa0618510:intron | 40.0% | |
| TGTCTTTGCCAATGGAGATA+GGG | + | chr4_2:69463282-69463301 | Msa0618510:intron | 40.0% | |
| GACAACAGAATAGGTAATGC+AGG | + | chr4_2:69463335-69463354 | Msa0618510:intron | 40.0% | |
| ATGCAGGATAGTTAGTGACA+TGG | + | chr4_2:69463351-69463370 | Msa0618510:intron | 40.0% | |
| TATTGTGTGCTTTATGCAGG+TGG | + | chr4_2:69463622-69463641 | Msa0618510:intron | 40.0% | |
| GTTTCTGTTGTGGAACACTT+TGG | + | chr4_2:69463692-69463711 | Msa0618510:CDS | 40.0% | |
| !! | CAAAATTCAATGCGCTGGTT+TGG | + | chr4_2:69463794-69463813 | Msa0618510:CDS | 40.0% |
| TCTCTCATAGAAAAGCAAGC+TGG | - | chr4_2:69463876-69463895 | None:intergenic | 40.0% | |
| ! | TTTGACTGGTTGCAGAGAGT+TGG | + | chr4_2:69460938-69460957 | Msa0618510:CDS | 45.0% |
| CAGCTACAATGAACTGCTTC+AGG | - | chr4_2:69460982-69461001 | None:intergenic | 45.0% | |
| TTGCAGCATTATGCCAACAG+TGG | - | chr4_2:69461030-69461049 | None:intergenic | 45.0% | |
| TTCCTTGATGGAAGGAGACA+AGG | + | chr4_2:69461060-69461079 | Msa0618510:CDS | 45.0% | |
| TACCTTGTCTCCTTCCATCA+AGG | - | chr4_2:69461065-69461084 | None:intergenic | 45.0% | |
| GGTGAGGGATACATAGATGT+TGG | + | chr4_2:69461136-69461155 | Msa0618510:intron | 45.0% | |
| !! | GAACAGTCAGTTGGTAGAGT+CGG | - | chr4_2:69461165-69461184 | None:intergenic | 45.0% |
| AGGTAGAGCTTGGAAACCTT+AGG | + | chr4_2:69461225-69461244 | Msa0618510:intron | 45.0% | |
| !! | TAAGTATTGCTCGGTGTCCA+AGG | + | chr4_2:69461342-69461361 | Msa0618510:CDS | 45.0% |
| !! | AAGTATTGCTCGGTGTCCAA+GGG | + | chr4_2:69461343-69461362 | Msa0618510:CDS | 45.0% |
| ! | AAGCCTAAGCCTTATGCCAA+GGG | - | chr4_2:69461616-69461635 | None:intergenic | 45.0% |
| ! | TAAGCCTAAGCCTTATGCCA+AGG | - | chr4_2:69461617-69461636 | None:intergenic | 45.0% |
| !! | AATGCTTAAAGAGTGCCCCA+GGG | + | chr4_2:69461842-69461861 | Msa0618510:intron | 45.0% |
| CGTAACTCTTTGCCAAACCA+TGG | + | chr4_2:69462047-69462066 | Msa0618510:CDS | 45.0% | |
| GATCTGTAGCTCCTCCATAA+AGG | - | chr4_2:69462115-69462134 | None:intergenic | 45.0% | |
| AATTGCCTGTCTACTTGTGG+AGG | - | chr4_2:69462174-69462193 | None:intergenic | 45.0% | |
| TCGCAATCCATTGATACGGT+TGG | + | chr4_2:69462248-69462267 | Msa0618510:intron | 45.0% | |
| CATGGGTAAACAGGATTTCG+TGG | - | chr4_2:69462313-69462332 | None:intergenic | 45.0% | |
| TGATGTGTCCTTCTCCAATG+TGG | + | chr4_2:69462569-69462588 | Msa0618510:intron | 45.0% | |
| ATTAATGGCCACAGCCACAT+TGG | - | chr4_2:69462586-69462605 | None:intergenic | 45.0% | |
| GTTGTGATGCTTGAAGAACC+TGG | + | chr4_2:69462607-69462626 | Msa0618510:intron | 45.0% | |
| ATGGATCTCTATAAGGGTGG+AGG | - | chr4_2:69462756-69462775 | None:intergenic | 45.0% | |
| ACATGGCAATAATAACGCGG+TGG | - | chr4_2:69462798-69462817 | None:intergenic | 45.0% | |
| GCCTACATTCAAGATGCTAG+AGG | - | chr4_2:69462861-69462880 | None:intergenic | 45.0% | |
| ! | GGTTTGGTTGAATCTGCTCA+AGG | - | chr4_2:69463134-69463153 | None:intergenic | 45.0% |
| !!! | GTAATGGGCACTGCTTTTTC+TGG | + | chr4_2:69463237-69463256 | Msa0618510:intron | 45.0% |
| CCATTGGCAAAGACATACTC+TGG | - | chr4_2:69463277-69463296 | None:intergenic | 45.0% | |
| CCAGAGTATGTCTTTGCCAA+TGG | + | chr4_2:69463274-69463293 | Msa0618510:intron | 45.0% | |
| TTTGCCAATGGAGATAGGGA+TGG | + | chr4_2:69463286-69463305 | Msa0618510:intron | 45.0% | |
| GGATAGTTAGTGACATGGCA+AGG | + | chr4_2:69463356-69463375 | Msa0618510:intron | 45.0% | |
| AGTTAGTGACATGGCAAGGA+TGG | + | chr4_2:69463360-69463379 | Msa0618510:intron | 45.0% | |
| GTGATGAAATGGCAAACCGA+CGG | - | chr4_2:69463390-69463409 | None:intergenic | 45.0% | |
| ATCAGAGTCCTCAGATGTCT+CGG | + | chr4_2:69463757-69463776 | Msa0618510:CDS | 45.0% | |
| TGGTGTTTCAGATTCTCACG+TGG | + | chr4_2:69463814-69463833 | Msa0618510:CDS | 45.0% | |
| TTGAACTGCTGCATGCCTAC+TGG | + | chr4_2:69460899-69460918 | Msa0618510:CDS | 50.0% | |
| ACTACAACTGCAGCCACTGT+TGG | + | chr4_2:69461014-69461033 | Msa0618510:CDS | 50.0% | |
| GTTCCCTTGGCATAAGGCTT+AGG | + | chr4_2:69461610-69461629 | Msa0618510:intron | 50.0% | |
| !! | GTCCTTAAAGAGTGCCTCAG+GGG | - | chr4_2:69461731-69461750 | None:intergenic | 50.0% |
| !! | GGTCCTTAAAGAGTGCCTCA+GGG | - | chr4_2:69461732-69461751 | None:intergenic | 50.0% |
| !! | TGGTCCTTAAAGAGTGCCTC+AGG | - | chr4_2:69461733-69461752 | None:intergenic | 50.0% |
| !! | GAATGCTTAAAGAGTGCCCC+AGG | + | chr4_2:69461841-69461860 | Msa0618510:intron | 50.0% |
| !! | ATGCTTAAAGAGTGCCCCAG+GGG | + | chr4_2:69461843-69461862 | Msa0618510:intron | 50.0% |
| TCTTGTTAACGAGTGCCCCT+GGG | - | chr4_2:69461861-69461880 | None:intergenic | 50.0% | |
| TAGCTCCTCCACAAGTAGAC+AGG | + | chr4_2:69462166-69462185 | Msa0618510:CDS | 50.0% | |
| ATGCTAGAGGAAAGGGGAAG+GGG | - | chr4_2:69462848-69462867 | None:intergenic | 50.0% | |
| GATGCTAGAGGAAAGGGGAA+GGG | - | chr4_2:69462849-69462868 | None:intergenic | 50.0% | |
| AGATGCTAGAGGAAAGGGGA+AGG | - | chr4_2:69462850-69462869 | None:intergenic | 50.0% | |
| AATGGAGATAGGGATGGACG+CGG | + | chr4_2:69463292-69463311 | Msa0618510:intron | 50.0% | |
| GGATGGGGTGACAACAGAAT+AGG | + | chr4_2:69463326-69463345 | Msa0618510:intron | 50.0% | |
| ! | GTGGAACACTTTGGAAGAGC+TGG | + | chr4_2:69463701-69463720 | Msa0618510:CDS | 50.0% |
| ! | GAACACTTTGGAAGAGCTGG+AGG | + | chr4_2:69463704-69463723 | Msa0618510:CDS | 50.0% |
| TCAGAGTCCTCAGATGTCTC+GGG | + | chr4_2:69463758-69463777 | Msa0618510:CDS | 50.0% | |
| CGAAGAAGTTCTGTCTGCTG+AGG | + | chr4_2:69463850-69463869 | Msa0618510:CDS | 50.0% | |
| CTGCTTCAGGCATTCCTCCA+GGG | - | chr4_2:69460969-69460988 | None:intergenic | 55.0% | |
| ACTGCTTCAGGCATTCCTCC+AGG | - | chr4_2:69460970-69460989 | None:intergenic | 55.0% | |
| AATGTTAGCGAGTGCCCCTG+AGG | + | chr4_2:69461714-69461733 | Msa0618510:intron | 55.0% | |
| ! | TGCCCCTGAGGCACTCTTTA+AGG | + | chr4_2:69461726-69461745 | Msa0618510:intron | 55.0% |
| CTTGTTAACGAGTGCCCCTG+GGG | - | chr4_2:69461860-69461879 | None:intergenic | 55.0% | |
| ! | GTCTTGTTAACGAGTGCCCC+TGG | - | chr4_2:69461862-69461881 | None:intergenic | 55.0% |
| GTCCTTCTCCAATGTGGCTG+TGG | + | chr4_2:69462575-69462594 | Msa0618510:intron | 55.0% | |
| AGAGGAAAGGGGAAGGGGAA+GGG | - | chr4_2:69462843-69462862 | None:intergenic | 55.0% | |
| TAGAGGAAAGGGGAAGGGGA+AGG | - | chr4_2:69462844-69462863 | None:intergenic | 55.0% | |
| GCGTCCATCCCTATCTCCAT+TGG | - | chr4_2:69463293-69463312 | None:intergenic | 55.0% | |
| ATGGAGATAGGGATGGACGC+GGG | + | chr4_2:69463293-69463312 | Msa0618510:intron | 55.0% | |
| ! | CACTTTGGAAGAGCTGGAGG+AGG | + | chr4_2:69463707-69463726 | Msa0618510:CDS | 55.0% |
| GCAATCACCCGAGACATCTG+AGG | - | chr4_2:69463768-69463787 | None:intergenic | 55.0% | |
| GCAGAGAGTTGGCTGTACCC+TGG | + | chr4_2:69460949-69460968 | Msa0618510:CDS | 60.0% | |
| GAGAGTTGGCTGTACCCTGG+AGG | + | chr4_2:69460952-69460971 | Msa0618510:CDS | 60.0% | |
| GGCCACAGCCACATTGGAGA+AGG | - | chr4_2:69462580-69462599 | None:intergenic | 60.0% | |
| GAGGAAAGGGGAAGGGGAAG+GGG | - | chr4_2:69462842-69462861 | None:intergenic | 60.0% | |
| TGGAGATAGGGATGGACGCG+GGG | + | chr4_2:69463294-69463313 | Msa0618510:intron | 60.0% | |
| ATAGGGATGGACGCGGGGAA+CGG | + | chr4_2:69463299-69463318 | Msa0618510:intron | 60.0% | |
| TGGCAAGGATGGTGTGCCGT+CGG | + | chr4_2:69463371-69463390 | Msa0618510:intron | 60.0% | |
| GGAAGGGGAAGGGGCTGCAT+GGG | - | chr4_2:69462833-69462852 | None:intergenic | 65.0% | |
| GATGGACGCGGGGAACGGAA+GGG | + | chr4_2:69463304-69463323 | Msa0618510:intron | 65.0% | |
| ATGGACGCGGGGAACGGAAG+GGG | + | chr4_2:69463305-69463324 | Msa0618510:intron | 65.0% | |
| GGGAAGGGGAAGGGGCTGCA+TGG | - | chr4_2:69462834-69462853 | None:intergenic | 70.0% | |
| GGATGGACGCGGGGAACGGA+AGG | + | chr4_2:69463303-69463322 | Msa0618510:intron | 70.0% | |
| ACGCGGGGAACGGAAGGGGA+TGG | + | chr4_2:69463309-69463328 | Msa0618510:intron | 70.0% | |
| CGCGGGGAACGGAAGGGGAT+GGG | + | chr4_2:69463310-69463329 | Msa0618510:intron | 70.0% | |
| GCGGGGAACGGAAGGGGATG+GGG | + | chr4_2:69463311-69463330 | Msa0618510:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 69460899 | 69463910 | 69460899 | ID=Msa0618510;Name=Msa0618510 |
| chr4_2 | mRNA | 69460899 | 69463910 | 69460899 | ID=Msa0618510-mRNA-1;Parent=Msa0618510;Name=Msa0618510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.5|1|1|1|4|0|300 |
| chr4_2 | exon | 69460899 | 69461081 | 69460899 | ID=Msa0618510-mRNA-1:exon:20053;Parent=Msa0618510-mRNA-1 |
| chr4_2 | exon | 69461227 | 69461364 | 69461227 | ID=Msa0618510-mRNA-1:exon:20054;Parent=Msa0618510-mRNA-1 |
| chr4_2 | exon | 69461954 | 69462265 | 69461954 | ID=Msa0618510-mRNA-1:exon:20055;Parent=Msa0618510-mRNA-1 |
| chr4_2 | exon | 69463641 | 69463910 | 69463641 | ID=Msa0618510-mRNA-1:exon:20056;Parent=Msa0618510-mRNA-1 |
| chr4_2 | CDS | 69460899 | 69461081 | 69460899 | ID=Msa0618510-mRNA-1:cds;Parent=Msa0618510-mRNA-1 |
| chr4_2 | CDS | 69461227 | 69461364 | 69461227 | ID=Msa0618510-mRNA-1:cds;Parent=Msa0618510-mRNA-1 |
| chr4_2 | CDS | 69461954 | 69462265 | 69461954 | ID=Msa0618510-mRNA-1:cds;Parent=Msa0618510-mRNA-1 |
| chr4_2 | CDS | 69463641 | 69463910 | 69463641 | ID=Msa0618510-mRNA-1:cds;Parent=Msa0618510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
