AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944190 MtrunA17_Chr6g0460991 99.338 151 1 0 1 151 1 151 5.50e-110 308
Msa0944190 MtrunA17_Chr1g0195701 50.435 115 56 1 1 114 1 115 4.07e-38 128
Msa0944190 MtrunA17_Chr7g0269271 50.000 108 53 1 1 107 1 108 4.80e-33 116
Msa0944190 MtrunA17_Chr6g0465301 46.032 126 65 2 1 123 1 126 4.48e-32 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944190 AT3G03773.1 72.185 151 41 1 1 151 1 150 1.79e-75 222
Msa0944190 AT3G03773.2 71.523 151 42 1 1 151 55 204 5.12e-74 220
Msa0944190 AT3G03773.3 75.221 113 27 1 1 113 1 112 4.42e-57 174
Msa0944190 AT4G02450.2 44.737 114 61 2 1 113 1 113 1.59e-29 108
Msa0944190 AT4G02450.1 44.737 114 61 2 1 113 1 113 1.62e-29 108

Find 58 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTACCTTCTCTGCTTCT+AGG 0.161269 6_3:+20899492 Msa0944190:CDS
CGCTGTGCCCAGAGAACTTC+TGG 0.233437 6_3:-20899395 None:intergenic
ATTTATTCCAATCAACTTTC+AGG 0.279329 6_3:-20900106 None:intergenic
AGCTTTAGCTTGGAACTTTA+CGG 0.318131 6_3:+20899533 Msa0944190:CDS
TGAAAGTTGATTGGAATAAA+TGG 0.325851 6_3:+20900108 Msa0944190:CDS
TAGGGTTGTAAAACTAAAAC+TGG 0.339082 6_3:+20899996 Msa0944190:intron
CGTCCATCATCGTCAGATAT+TGG 0.361939 6_3:-20902777 None:intergenic
TTCTGTGAAGTGTGAGCCTC+AGG 0.376022 6_3:+20899466 Msa0944190:CDS
ATAAAATCTGAGTGGTGCTT+TGG 0.378229 6_3:+20903954 Msa0944190:three_prime_UTR
GTCGCCATCCAGAAGTTCTC+TGG 0.391191 6_3:+20899387 Msa0944190:intron
TCAATTGTTGTTGTTAGAGT+TGG 0.394547 6_3:+20904059 Msa0944190:three_prime_UTR
TTCAAGGAGATGGAATTATA+TGG 0.406270 6_3:+20903858 Msa0944190:three_prime_UTR
ATTATATGGAAGTGTTAGAT+AGG 0.430243 6_3:+20903872 Msa0944190:three_prime_UTR
CACCATACCTGAAAGTTGAT+TGG 0.430676 6_3:+20900099 Msa0944190:CDS
AAGTTCCAAGCTAAAGCTAT+AGG 0.431266 6_3:-20899528 None:intergenic
CAAAAGTTGATGAAGCTTCA+AGG 0.431798 6_3:+20903842 Msa0944190:three_prime_UTR
CAATTGTTGTTGTTAGAGTT+GGG 0.432885 6_3:+20904060 Msa0944190:three_prime_UTR
TAACAACAACAATTGATGTC+AGG 0.435310 6_3:-20904052 None:intergenic
CTGGGCACAGCGTTCTGGTA+AGG 0.451788 6_3:+20899406 Msa0944190:CDS
TTCCAATCAACTTTCAGGTA+TGG 0.454166 6_3:-20900101 None:intergenic
GACAAAGAGGTTGGTGGAAA+AGG 0.458246 6_3:+20900051 Msa0944190:CDS
TTGTTGTTAGAGTTGGGAAT+AGG 0.467711 6_3:+20904066 Msa0944190:three_prime_UTR
TCTTGCAGATCTCCCTGACT+TGG 0.470280 6_3:+20903784 Msa0944190:intron
TGGAAGTGTTAGATAGGTGC+AGG 0.472720 6_3:+20903878 Msa0944190:three_prime_UTR
GTTTACCTTCTCTGCTTCTA+GGG 0.475165 6_3:+20899493 Msa0944190:CDS
ACAGAAACATCCTTGGCATC+AGG 0.484531 6_3:-20899449 None:intergenic
TTGATGAAGCTTCAAGGAGA+TGG 0.499101 6_3:+20903848 Msa0944190:three_prime_UTR
TGAATCCTATAGCTTTAGCT+TGG 0.502986 6_3:+20899523 Msa0944190:CDS
TCAACTTTCAGGTATGGTGC+AGG 0.517519 6_3:-20900095 None:intergenic
AGATCTCCCTGACTTGGAAA+AGG 0.525126 6_3:+20903790 Msa0944190:intron
TTGACTCTTTGATGTGTCGT+TGG 0.526952 6_3:-20898222 None:intergenic
CCCTGACTTGGAAAAGGCTA+GGG 0.528158 6_3:+20903796 Msa0944190:CDS
TCCCTGACTTGGAAAAGGCT+AGG 0.531404 6_3:+20903795 Msa0944190:CDS
GGAATAGGTTGAGCCGAGCT+AGG 0.538504 6_3:+20904081 Msa0944190:three_prime_UTR
CATCAGGTAGAGCAATAGTC+AGG 0.541944 6_3:-20899433 None:intergenic
GATGAAAGCAGTGACGATGA+AGG 0.545274 6_3:+20902917 Msa0944190:CDS
ACACTTCACAGAAACATCCT+TGG 0.552534 6_3:-20899456 None:intergenic
GATAGTCTACAAGTCAAACT+TGG 0.553100 6_3:-20904115 None:intergenic
CAATATCTGACGATGATGGA+CGG 0.555023 6_3:+20902778 Msa0944190:CDS
TTCAGAAAGGACAAAGAGGT+TGG 0.555066 6_3:+20900042 Msa0944190:CDS
GAACCAATATCTGACGATGA+TGG 0.555270 6_3:+20902774 Msa0944190:CDS
AACAACAACAATTGATGTCA+GGG 0.560965 6_3:-20904051 None:intergenic
TCTCACTCAGCTCAAGAATG+AGG 0.568493 6_3:+20898268 Msa0944190:exon
AGAAAGGACAAAGAGGTTGG+TGG 0.573743 6_3:+20900045 Msa0944190:CDS
AATATCTGACGATGATGGAC+GGG 0.575138 6_3:+20902779 Msa0944190:CDS
TCGCCATCCAGAAGTTCTCT+GGG 0.582774 6_3:+20899388 Msa0944190:CDS
TTGAACCCTAGAAGCAGAGA+AGG 0.586114 6_3:-20899498 None:intergenic
ATACTATGCTCAATTCAGAA+AGG 0.596991 6_3:+20900029 Msa0944190:CDS
GTGCCCAGAGAACTTCTGGA+TGG 0.615220 6_3:-20899391 None:intergenic
TCTGTGAAGTGTGAGCCTCA+GGG 0.627276 6_3:+20899467 Msa0944190:CDS
GAGCCGAGCTAGGCTATGCA+AGG 0.630588 6_3:+20904091 Msa0944190:three_prime_UTR
GGACCTTGCATAGCCTAGCT+CGG 0.631296 6_3:-20904094 None:intergenic
TATTGCTCTACCTGATGCCA+AGG 0.634051 6_3:+20899439 Msa0944190:CDS
TTACGGATCGATTCAACCTG+AGG 0.640397 6_3:+20899550 Msa0944190:CDS
TCAATTCAGAAAGGACAAAG+AGG 0.648365 6_3:+20900038 Msa0944190:CDS
GGAAGTGTTAGATAGGTGCA+GGG 0.658917 6_3:+20903879 Msa0944190:three_prime_UTR
GTATATATATAAAATCTGAG+TGG 0.721475 6_3:+20903946 Msa0944190:three_prime_UTR
GAGAAGGTAAACAAACCCTG+AGG 0.771648 6_3:-20899482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTATTTTTTAAAAA+AGG + chr6_3:20903416-20903435 Msa0944190:intron 0.0%
!! AATAACAAAAAAATTGAAAT+GGG - chr6_3:20898376-20898395 None:intergenic 10.0%
!! TAATAACAAAAAAATTGAAA+TGG - chr6_3:20898377-20898396 None:intergenic 10.0%
!!! TTTATTATGTAATTGAATTT+TGG + chr6_3:20898947-20898966 Msa0944190:intron 10.0%
!!! AATTAATTTGATTTGATTTT+TGG + chr6_3:20899350-20899369 Msa0944190:intron 10.0%
!!! TTTATCTATTTAATTTAGTT+CGG - chr6_3:20901558-20901577 None:intergenic 10.0%
!!! AATATTTTCTCAAATTAAAT+AGG + chr6_3:20902592-20902611 Msa0944190:intron 10.0%
!! TATATTATGAAATAAAGTAA+GGG - chr6_3:20903355-20903374 None:intergenic 10.0%
!! ATATATTATGAAATAAAGTA+AGG - chr6_3:20903356-20903375 None:intergenic 10.0%
!!! TTACTTTATTTCATAATATA+TGG + chr6_3:20903355-20903374 Msa0944190:intron 10.0%
!!! TTTTCATCATTATTTTTACA+AGG - chr6_3:20898439-20898458 None:intergenic 15.0%
!! TTTATTAAGTAATTGAATAC+TGG + chr6_3:20898736-20898755 Msa0944190:intron 15.0%
!!! ATCATAAAGTATTTTCTAAT+TGG + chr6_3:20900169-20900188 Msa0944190:intron 15.0%
!! TTTCTAATCATAATTAAACA+GGG + chr6_3:20900302-20900321 Msa0944190:intron 15.0%
!! TAAGATACTAAGATTAAAAA+TGG + chr6_3:20900376-20900395 Msa0944190:intron 15.0%
!! CAAAAGATATTAAATAAACA+AGG - chr6_3:20900711-20900730 None:intergenic 15.0%
!!! TTATATTTGTAAGTTTCTTT+TGG + chr6_3:20900769-20900788 Msa0944190:intron 15.0%
!!! TATATTTGTAAGTTTCTTTT+GGG + chr6_3:20900770-20900789 Msa0944190:intron 15.0%
!!! TTTTACCAATGATATATAAA+TGG + chr6_3:20900852-20900871 Msa0944190:intron 15.0%
!!! ATAAAAAAATGTTTTTCATC+TGG + chr6_3:20901062-20901081 Msa0944190:intron 15.0%
!!! TAATGTGCATATTTATTTTT+TGG - chr6_3:20901126-20901145 None:intergenic 15.0%
!!! ATAAGCTATTTCTATATTAA+AGG + chr6_3:20903141-20903160 Msa0944190:intron 15.0%
!!! ATTCTATTTTTCTTTAACTA+TGG + chr6_3:20903509-20903528 Msa0944190:intron 15.0%
!! TTGAATTATTGCTTAATTTC+AGG + chr6_3:20898346-20898365 Msa0944190:intron 20.0%
!! TTTACATGTTACAAACAAAT+GGG - chr6_3:20898490-20898509 None:intergenic 20.0%
!! TTATTGAGTATATTGAATGT+TGG + chr6_3:20898535-20898554 Msa0944190:intron 20.0%
!!! TGCTGATATGATTTTAATAA+TGG + chr6_3:20898604-20898623 Msa0944190:intron 20.0%
!! CAGATTATTGAAACTTAATA+GGG - chr6_3:20898907-20898926 None:intergenic 20.0%
!! TCAGATTATTGAAACTTAAT+AGG - chr6_3:20898908-20898927 None:intergenic 20.0%
!! CAGAATATTGAAATGTTATA+GGG - chr6_3:20899108-20899127 None:intergenic 20.0%
!! TCAGAATATTGAAATGTTAT+AGG - chr6_3:20899109-20899128 None:intergenic 20.0%
!! AAAAAAAAATCTTTCGACTA+GGG - chr6_3:20899326-20899345 None:intergenic 20.0%
!! AAAAAAAAAATCTTTCGACT+AGG - chr6_3:20899327-20899346 None:intergenic 20.0%
!!! ACGTAATATAAAGGTTTTAA+AGG + chr6_3:20899667-20899686 Msa0944190:intron 20.0%
!!! AAGATTAACCCTTATTTATA+GGG + chr6_3:20900271-20900290 Msa0944190:intron 20.0%
!! GTTTCTAATCATAATTAAAC+AGG + chr6_3:20900301-20900320 Msa0944190:intron 20.0%
!!! ATATTTGTAAGTTTCTTTTG+GGG + chr6_3:20900771-20900790 Msa0944190:intron 20.0%
!! TATACTTAAGATATGTGAAA+AGG + chr6_3:20901167-20901186 Msa0944190:intron 20.0%
!!! ATGTATAGTGTTGTTTTTTA+CGG + chr6_3:20901324-20901343 Msa0944190:intron 20.0%
!!! TTTCTGTTCATTTTCTATTT+TGG + chr6_3:20902385-20902404 Msa0944190:intron 20.0%
!!! ATTACCAACAAATATCATTT+TGG - chr6_3:20903006-20903025 None:intergenic 20.0%
!! TTCTTTAACTATGGATTTAA+AGG + chr6_3:20903518-20903537 Msa0944190:intron 20.0%
!!! CTCAGATTTTATATATATAC+AGG - chr6_3:20903946-20903965 None:intergenic 20.0%
!! GTATATATATAAAATCTGAG+TGG + chr6_3:20903946-20903965 Msa0944190:three_prime_UTR 20.0%
!! TTACAAGGATGTGATTTTTA+TGG - chr6_3:20898424-20898443 None:intergenic 25.0%
! CTTTACATGTTACAAACAAA+TGG - chr6_3:20898491-20898510 None:intergenic 25.0%
!! AATTGTGGTTTTTGATATTG+TGG + chr6_3:20898563-20898582 Msa0944190:intron 25.0%
! CAGAATATTGAAACTCTATA+GGG - chr6_3:20898706-20898725 None:intergenic 25.0%
! CTATAGAGTTTCAATATTCT+GGG + chr6_3:20898705-20898724 Msa0944190:intron 25.0%
!!! TGAATACTGGTTTTAAATCA+TGG + chr6_3:20898749-20898768 Msa0944190:intron 25.0%
! AATCATGGTATTTGATATTG+CGG + chr6_3:20898764-20898783 Msa0944190:intron 25.0%
! ATATTCAAATGTTGTTGACA+CGG + chr6_3:20898793-20898812 Msa0944190:intron 25.0%
!!! TGAATTTTGGTTTTGAAATG+TGG + chr6_3:20898960-20898979 Msa0944190:intron 25.0%
!! AAATGTGGTTTTTGATATTG+TGG + chr6_3:20898975-20898994 Msa0944190:intron 25.0%
! TTGATTATGTACATACTTTG+TGG + chr6_3:20899619-20899638 Msa0944190:intron 25.0%
! TATATCCTAGTTTCAAATTG+TGG + chr6_3:20899643-20899662 Msa0944190:intron 25.0%
! AATTGTGGTACGTAATATAA+AGG + chr6_3:20899658-20899677 Msa0944190:intron 25.0%
!!! TGCATTTTTTCACATTATCA+AGG + chr6_3:20899733-20899752 Msa0944190:intron 25.0%
! AACTAAAACAATTCGTAAAG+TGG - chr6_3:20899909-20899928 None:intergenic 25.0%
!!! TTCCTTATCATGTTTTGAAA+AGG + chr6_3:20899935-20899954 Msa0944190:intron 25.0%
!! AACCTTTTCAAAACATGATA+AGG - chr6_3:20899940-20899959 None:intergenic 25.0%
!!! TTATCATGTTTTGAAAAGGT+TGG + chr6_3:20899939-20899958 Msa0944190:intron 25.0%
! ATATTGTCATTGTTGTATCT+AGG + chr6_3:20899977-20899996 Msa0944190:intron 25.0%
! TATTGTCATTGTTGTATCTA+GGG + chr6_3:20899978-20899997 Msa0944190:intron 25.0%
! ATTTATTCCAATCAACTTTC+AGG - chr6_3:20900109-20900128 None:intergenic 25.0%
!! TGAAAGTTGATTGGAATAAA+TGG + chr6_3:20900108-20900127 Msa0944190:CDS 25.0%
! CATGAACATTTATATCTGTA+TGG + chr6_3:20900218-20900237 Msa0944190:intron 25.0%
!! GAAGATTAACCCTTATTTAT+AGG + chr6_3:20900270-20900289 Msa0944190:intron 25.0%
!! TATTTGTAAGTTTCTTTTGG+GGG + chr6_3:20900772-20900791 Msa0944190:intron 25.0%
! ATTAGGATTATAACTGTGTT+AGG + chr6_3:20900819-20900838 Msa0944190:intron 25.0%
! AAAGGCCATTTATATATCAT+TGG - chr6_3:20900860-20900879 None:intergenic 25.0%
! AGAGAAATCCAATTTAATTG+CGG + chr6_3:20901010-20901029 Msa0944190:intron 25.0%
! TTATTGTACCGCAATTAAAT+TGG - chr6_3:20901021-20901040 None:intergenic 25.0%
!! AAAAAATGTTTTTCATCTGG+TGG + chr6_3:20901065-20901084 Msa0944190:intron 25.0%
! AGTATATAATATCGTGTCAT+CGG - chr6_3:20901153-20901172 None:intergenic 25.0%
!! TTTTGGATTAAGCAAGATTT+TGG + chr6_3:20901662-20901681 Msa0944190:intron 25.0%
! CAACTTGAGTTCAAATATTA+TGG + chr6_3:20901695-20901714 Msa0944190:intron 25.0%
! TCTAATATGGTAAAAACTGA+GGG - chr6_3:20901935-20901954 None:intergenic 25.0%
!! TAAGTAAATAATCAAGTTGC+AGG - chr6_3:20902067-20902086 None:intergenic 25.0%
! ATTTACTTAGATGCAAAAGA+TGG + chr6_3:20902078-20902097 Msa0944190:intron 25.0%
!! TGAACAGAAAAGATTTTACA+AGG - chr6_3:20902375-20902394 None:intergenic 25.0%
! TAATTAAAGTAGAGATGCAA+TGG - chr6_3:20902961-20902980 None:intergenic 25.0%
! CTTACCAAAATGATATTTGT+TGG + chr6_3:20902999-20903018 Msa0944190:intron 25.0%
! ATATGCTCTATGAAATATGT+AGG + chr6_3:20903045-20903064 Msa0944190:intron 25.0%
!! AAATAAAGTAAGGGTTTGTT+TGG - chr6_3:20903346-20903365 None:intergenic 25.0%
! AGACAATTATCATTTATGTC+AGG - chr6_3:20903767-20903786 None:intergenic 25.0%
!!! ATTATATGGAAGTGTTAGAT+AGG + chr6_3:20903872-20903891 Msa0944190:three_prime_UTR 25.0%
!!! CTTGTTTTTCTTTGATTACA+TGG + chr6_3:20903991-20904010 Msa0944190:three_prime_UTR 25.0%
!!! ACTATCATCGACTTATTTTT+AGG + chr6_3:20904132-20904151 Msa0944190:three_prime_UTR 25.0%
TTCAGTGAAAGTAAAACGAA+GGG - chr6_3:20898304-20898323 None:intergenic 30.0%
TTTCAGTGAAAGTAAAACGA+AGG - chr6_3:20898305-20898324 None:intergenic 30.0%
!!! TGAATGTTGGTTTTGAATTG+TGG + chr6_3:20898548-20898567 Msa0944190:intron 30.0%
CCAGAATATTGAAACTCTAT+AGG - chr6_3:20898707-20898726 None:intergenic 30.0%
CCTATAGAGTTTCAATATTC+TGG + chr6_3:20898704-20898723 Msa0944190:intron 30.0%
! GTGAGTGATCTTTTCTTAAA+TGG + chr6_3:20899572-20899591 Msa0944190:intron 30.0%
TGAAAAAATGCAGACAAATG+TGG - chr6_3:20899725-20899744 None:intergenic 30.0%
TATGAAAAACTTTCATAGCC+CGG - chr6_3:20899803-20899822 None:intergenic 30.0%
AAAACAATTCGTAAAGTGGA+CGG - chr6_3:20899905-20899924 None:intergenic 30.0%
ACAATGACAATATTTCAGAC+AGG - chr6_3:20899970-20899989 None:intergenic 30.0%
TAGGGTTGTAAAACTAAAAC+TGG + chr6_3:20899996-20900015 Msa0944190:intron 30.0%
ATACTATGCTCAATTCAGAA+AGG + chr6_3:20900029-20900048 Msa0944190:CDS 30.0%
ACTAACATGTAGAAATCACA+TGG - chr6_3:20900248-20900267 None:intergenic 30.0%
CCGTTTATCCCTATAAATAA+GGG - chr6_3:20900282-20900301 None:intergenic 30.0%
! CCCTTATTTATAGGGATAAA+CGG + chr6_3:20900279-20900298 Msa0944190:intron 30.0%
ACCGTTTATCCCTATAAATA+AGG - chr6_3:20900283-20900302 None:intergenic 30.0%
TCTAACAGTCATTATGATCT+TGG + chr6_3:20900455-20900474 Msa0944190:intron 30.0%
! ATTTGTAAGTTTCTTTTGGG+GGG + chr6_3:20900773-20900792 Msa0944190:intron 30.0%
GTTCACTACAATTAGGATAA+AGG - chr6_3:20900878-20900897 None:intergenic 30.0%
AGACTAAGTTCACTACAATT+AGG - chr6_3:20900885-20900904 None:intergenic 30.0%
ATTGAAAGCTCTCTAACAAA+AGG + chr6_3:20900984-20901003 Msa0944190:intron 30.0%
TTGAAAGCTCTCTAACAAAA+GGG + chr6_3:20900985-20901004 Msa0944190:intron 30.0%
GTTCAGAATCCATTTATCAA+TGG - chr6_3:20901352-20901371 None:intergenic 30.0%
TGAGTTCAAATATTATGGTC+TGG + chr6_3:20901700-20901719 Msa0944190:intron 30.0%
AAAAGTTGTTGGAAGTTGAA+TGG + chr6_3:20901858-20901877 Msa0944190:intron 30.0%
AAAGTTGTTGGAAGTTGAAT+GGG + chr6_3:20901859-20901878 Msa0944190:intron 30.0%
GTCTAATATGGTAAAAACTG+AGG - chr6_3:20901936-20901955 None:intergenic 30.0%
!! TTCATTTTAGTCATCTCTAG+TGG + chr6_3:20902127-20902146 Msa0944190:intron 30.0%
! ATGTTTTGTGCTTTACTTCT+TGG + chr6_3:20902268-20902287 Msa0944190:intron 30.0%
GGTAATAGTATATAGAGACA+AGG + chr6_3:20902289-20902308 Msa0944190:intron 30.0%
!!! ACCATGTTTCTAGTTTTCAA+AGG + chr6_3:20902439-20902458 Msa0944190:intron 30.0%
! ACCTTTGAAAACTAGAAACA+TGG - chr6_3:20902443-20902462 None:intergenic 30.0%
! ACCTTGCTTTCTTATTTGTA+TGG + chr6_3:20902668-20902687 Msa0944190:intron 30.0%
! CCTTGCTTTCTTATTTGTAT+GGG + chr6_3:20902669-20902688 Msa0944190:intron 30.0%
TTATTTGTATGGGTTTCTTG+AGG + chr6_3:20902679-20902698 Msa0944190:intron 30.0%
TGTCTGATTAAAGTTTCTGT+TGG + chr6_3:20902738-20902757 Msa0944190:intron 30.0%
ATTGAACAAGATTAAGTACC+TGG - chr6_3:20902863-20902882 None:intergenic 30.0%
CTTATGCATAAGCACTTATA+TGG - chr6_3:20903126-20903145 None:intergenic 30.0%
! AGTCAAATTGTTTTCATGCA+AGG + chr6_3:20903173-20903192 Msa0944190:intron 30.0%
ACTAAGCTGAAAACAGTTTA+TGG + chr6_3:20903235-20903254 Msa0944190:intron 30.0%
! GCTTATTTGAGTTTATCTAC+TGG - chr6_3:20903319-20903338 None:intergenic 30.0%
!!! GCAAAATAGTGGATTTTCAT+TGG - chr6_3:20903582-20903601 None:intergenic 30.0%
TTGAAACTGATAGTATGACA+TGG + chr6_3:20903630-20903649 Msa0944190:intron 30.0%
TATCATTTATGTCAGGTGTA+AGG - chr6_3:20903760-20903779 None:intergenic 30.0%
TTCAAGGAGATGGAATTATA+TGG + chr6_3:20903858-20903877 Msa0944190:three_prime_UTR 30.0%
AACAACAACAATTGATGTCA+GGG - chr6_3:20904054-20904073 None:intergenic 30.0%
TAACAACAACAATTGATGTC+AGG - chr6_3:20904055-20904074 None:intergenic 30.0%
! TCAATTGTTGTTGTTAGAGT+TGG + chr6_3:20904059-20904078 Msa0944190:three_prime_UTR 30.0%
! CAATTGTTGTTGTTAGAGTT+GGG + chr6_3:20904060-20904079 Msa0944190:three_prime_UTR 30.0%
!!! CTTATTTTTAGGCATGAATC+TGG + chr6_3:20904143-20904162 Msa0944190:three_prime_UTR 30.0%
TGAAAGTAAAACGAAGGGAA+AGG - chr6_3:20898299-20898318 None:intergenic 35.0%
! TTTTAATAATGGCCGTGTTG+TGG + chr6_3:20898615-20898634 Msa0944190:intron 35.0%
TTGTGGAGAATTGTGATCAA+AGG + chr6_3:20898992-20899011 Msa0944190:intron 35.0%
! AAGAATTTTGAACCGCAACA+CGG - chr6_3:20899042-20899061 None:intergenic 35.0%
TTGCCGAAAATCACATTCAA+AGG + chr6_3:20899193-20899212 Msa0944190:intron 35.0%
! CTGCCTTTGAATGTGATTTT+CGG - chr6_3:20899199-20899218 None:intergenic 35.0%
AAAATCACATTCAAAGGCAG+CGG + chr6_3:20899199-20899218 Msa0944190:intron 35.0%
!! TGAATCCTATAGCTTTAGCT+TGG + chr6_3:20899523-20899542 Msa0944190:CDS 35.0%
AAGTTCCAAGCTAAAGCTAT+AGG - chr6_3:20899531-20899550 None:intergenic 35.0%
!! AGCTTTAGCTTGGAACTTTA+CGG + chr6_3:20899533-20899552 Msa0944190:CDS 35.0%
! ACGTACCACAATTTGAAACT+AGG - chr6_3:20899651-20899670 None:intergenic 35.0%
CAATCACAATGTAGTTGAAG+AGG - chr6_3:20899693-20899712 None:intergenic 35.0%
! CCATTTTACCAATTGTTGTC+CGG + chr6_3:20899781-20899800 Msa0944190:intron 35.0%
! CATTTTACCAATTGTTGTCC+GGG + chr6_3:20899782-20899801 Msa0944190:intron 35.0%
! TGAAAAAGTGCAGACAAATG+TGG - chr6_3:20899850-20899869 None:intergenic 35.0%
AAACAATTCGTAAAGTGGAC+GGG - chr6_3:20899904-20899923 None:intergenic 35.0%
!!! CATGTTTTGAAAAGGTTGGA+TGG + chr6_3:20899943-20899962 Msa0944190:intron 35.0%
TCAATTCAGAAAGGACAAAG+AGG + chr6_3:20900038-20900057 Msa0944190:CDS 35.0%
! TTCCAATCAACTTTCAGGTA+TGG - chr6_3:20900104-20900123 None:intergenic 35.0%
AACAGTCATTATGATCTTGG+AGG + chr6_3:20900458-20900477 Msa0944190:intron 35.0%
AGAAATAAGCCAGGTTTGAT+AGG - chr6_3:20900492-20900511 None:intergenic 35.0%
CAAGCTGAAATGACGTAAAA+AGG - chr6_3:20900546-20900565 None:intergenic 35.0%
AGAATGAGTTACTGCAGAAA+GGG - chr6_3:20900613-20900632 None:intergenic 35.0%
TAGAATGAGTTACTGCAGAA+AGG - chr6_3:20900614-20900633 None:intergenic 35.0%
!! TTTGTAAGTTTCTTTTGGGG+GGG + chr6_3:20900774-20900793 Msa0944190:intron 35.0%
! ACTTAGTCTAGAATGTTAGC+AGG + chr6_3:20900896-20900915 Msa0944190:intron 35.0%
! TCTAGAATGTTAGCAGGAAT+GGG + chr6_3:20900902-20900921 Msa0944190:intron 35.0%
ATTACGCAATGAGGAAACTT+GGG - chr6_3:20900957-20900976 None:intergenic 35.0%
ATGAGTAAGATTACGCAATG+AGG - chr6_3:20900966-20900985 None:intergenic 35.0%
TAAGATATGTGAAAAGGCTG+AGG + chr6_3:20901173-20901192 Msa0944190:intron 35.0%
AAGATATGTGAAAAGGCTGA+GGG + chr6_3:20901174-20901193 Msa0944190:intron 35.0%
TCACTAGCTCATAACTAATC+AGG - chr6_3:20901267-20901286 None:intergenic 35.0%
AGTAGGATCAATGACTATAC+TGG + chr6_3:20901450-20901469 Msa0944190:intron 35.0%
TTCTTCACCAGAGATAACAA+TGG - chr6_3:20901516-20901535 None:intergenic 35.0%
ATTGTTATCTCTGGTGAAGA+AGG + chr6_3:20901515-20901534 Msa0944190:intron 35.0%
TCCTTAACACAACAAACAGA+TGG + chr6_3:20901759-20901778 Msa0944190:intron 35.0%
CCTTAACACAACAAACAGAT+GGG + chr6_3:20901760-20901779 Msa0944190:intron 35.0%
GCGATGTTAAGAAAAGTTGT+TGG + chr6_3:20901847-20901866 Msa0944190:intron 35.0%
ACCTATAGCACACAATATCA+AGG + chr6_3:20901884-20901903 Msa0944190:intron 35.0%
TATGGTAAAAACTGAGGGTA+AGG - chr6_3:20901930-20901949 None:intergenic 35.0%
CGTCAAATTAGCGTCTAATA+TGG - chr6_3:20901948-20901967 None:intergenic 35.0%
GCTAATTTGACGACTATACT+CGG + chr6_3:20901956-20901975 Msa0944190:intron 35.0%
TGACAATATCTAGTATAGCC+TGG - chr6_3:20901985-20902004 None:intergenic 35.0%
TAAATAGGACCTTAGCATCA+TGG + chr6_3:20902607-20902626 Msa0944190:intron 35.0%
CCCATACAAATAAGAAAGCA+AGG - chr6_3:20902672-20902691 None:intergenic 35.0%
! TTTCATCTTTTGCAGTTTGC+TGG + chr6_3:20902887-20902906 Msa0944190:intron 35.0%
TGAAATATGTAGGCTCAGTT+TGG + chr6_3:20903055-20903074 Msa0944190:intron 35.0%
! AAACAGTTGTTTGATTTCGC+AGG - chr6_3:20903488-20903507 None:intergenic 35.0%
!! AGTGGATTTTCATTGGATGT+CGG - chr6_3:20903575-20903594 None:intergenic 35.0%
TGAGTAATGTGGCAAAATAG+TGG - chr6_3:20903593-20903612 None:intergenic 35.0%
CTCTCAAAAGTTGAGTAATG+TGG - chr6_3:20903604-20903623 None:intergenic 35.0%
ATTTATGTCAGGTGTAAGGT+GGG - chr6_3:20903756-20903775 None:intergenic 35.0%
!! CAAAAGTTGATGAAGCTTCA+AGG + chr6_3:20903842-20903861 Msa0944190:three_prime_UTR 35.0%
ATAAAATCTGAGTGGTGCTT+TGG + chr6_3:20903954-20903973 Msa0944190:three_prime_UTR 35.0%
! TTGTTGTTAGAGTTGGGAAT+AGG + chr6_3:20904066-20904085 Msa0944190:three_prime_UTR 35.0%
GATAGTCTACAAGTCAAACT+TGG - chr6_3:20904118-20904137 None:intergenic 35.0%
!! TGCCAACTGAGCTTTTAAAA+TGG - chr6_3:20904169-20904188 None:intergenic 35.0%
TTGACTCTTTGATGTGTCGT+TGG - chr6_3:20898225-20898244 None:intergenic 40.0%
TTGTGGAGAATCACGATCAA+AGG + chr6_3:20898580-20898599 Msa0944190:intron 40.0%
TGTTGACACGGTTTCAATGA+TGG + chr6_3:20898805-20898824 Msa0944190:intron 40.0%
TTTCAATGATGGTCGTGTTG+TGG + chr6_3:20898816-20898835 Msa0944190:intron 40.0%
ATCAGAAACTGTTGATGTCG+CGG + chr6_3:20898849-20898868 Msa0944190:intron 40.0%
!!! TGCTGATATGGTTTTGACGA+TGG + chr6_3:20899016-20899035 Msa0944190:intron 40.0%
CTTCAATGAAGTCTGTGTTC+AGG + chr6_3:20899228-20899247 Msa0944190:intron 40.0%
AGTCTAAGTCGCAACATCAA+AGG - chr6_3:20899278-20899297 None:intergenic 40.0%
ACACTTCACAGAAACATCCT+TGG - chr6_3:20899459-20899478 None:intergenic 40.0%
TGTTTACCTTCTCTGCTTCT+AGG + chr6_3:20899492-20899511 Msa0944190:CDS 40.0%
GTTTACCTTCTCTGCTTCTA+GGG + chr6_3:20899493-20899512 Msa0944190:CDS 40.0%
AAGAAAAGATCACTCACCTC+AGG - chr6_3:20899569-20899588 None:intergenic 40.0%
CTACATTGTGATTGCAACTG+CGG + chr6_3:20899699-20899718 Msa0944190:intron 40.0%
CCGGACAACAATTGGTAAAA+TGG - chr6_3:20899784-20899803 None:intergenic 40.0%
CCACATTGTGATTGCAATTG+CGG + chr6_3:20899824-20899843 Msa0944190:intron 40.0%
TTCAGAAAGGACAAAGAGGT+TGG + chr6_3:20900042-20900061 Msa0944190:CDS 40.0%
! CACCATACCTGAAAGTTGAT+TGG + chr6_3:20900099-20900118 Msa0944190:CDS 40.0%
GTTCAATTGCCTATCAAACC+TGG + chr6_3:20900480-20900499 Msa0944190:intron 40.0%
ATGTGTTGGAGAAATAAGCC+AGG - chr6_3:20900501-20900520 None:intergenic 40.0%
! TGGCTTATTTCTCCAACACA+TGG + chr6_3:20900500-20900519 Msa0944190:intron 40.0%
CTGCTCAAACAAAATGAGCA+TGG - chr6_3:20900584-20900603 None:intergenic 40.0%
ATATGCAGTGACTACATTGC+AGG - chr6_3:20900675-20900694 None:intergenic 40.0%
TCATAAACTGCCACATGTGA+CGG - chr6_3:20900738-20900757 None:intergenic 40.0%
!! TTGTAAGTTTCTTTTGGGGG+GGG + chr6_3:20900775-20900794 Msa0944190:intron 40.0%
! GTCTAGAATGTTAGCAGGAA+TGG + chr6_3:20900901-20900920 Msa0944190:intron 40.0%
GATTACGCAATGAGGAAACT+TGG - chr6_3:20900958-20900977 None:intergenic 40.0%
GCAAAAATTTGCCAACTGCT+AGG - chr6_3:20901218-20901237 None:intergenic 40.0%
TTTACGGCGCCATTGATAAA+TGG + chr6_3:20901340-20901359 Msa0944190:intron 40.0%
! TTAGCTGCTTTGGCTAGTAT+AGG + chr6_3:20901380-20901399 Msa0944190:intron 40.0%
! TAGCTGCTTTGGCTAGTATA+GGG + chr6_3:20901381-20901400 Msa0944190:intron 40.0%
AGGATCAATGACTATACTGG+TGG + chr6_3:20901453-20901472 Msa0944190:intron 40.0%
TCACCAGAGATAACAATGGT+AGG - chr6_3:20901512-20901531 None:intergenic 40.0%
! AAGAGTGACTGCTGTGATTT+TGG + chr6_3:20901645-20901664 Msa0944190:intron 40.0%
TTGTTGTGTTAAGGAGAGGA+GGG - chr6_3:20901754-20901773 None:intergenic 40.0%
! TTTGTTGTGTTAAGGAGAGG+AGG - chr6_3:20901755-20901774 None:intergenic 40.0%
!! CTGTTTGTTGTGTTAAGGAG+AGG - chr6_3:20901758-20901777 None:intergenic 40.0%
!! CCCATCTGTTTGTTGTGTTA+AGG - chr6_3:20901763-20901782 None:intergenic 40.0%
GCCTTGATATTGTGTGCTAT+AGG - chr6_3:20901888-20901907 None:intergenic 40.0%
AGAAGAAATGTGACAAGCAG+TGG - chr6_3:20902044-20902063 None:intergenic 40.0%
TCATCTCTAGTGGTAGAAAG+TGG + chr6_3:20902137-20902156 Msa0944190:intron 40.0%
! GAAAAATAGGTAGTGGTCAG+TGG - chr6_3:20902165-20902184 None:intergenic 40.0%
AGAAGGGGAAAAATAGGTAG+TGG - chr6_3:20902172-20902191 None:intergenic 40.0%
AGAGACAAGGAGACTAACAA+TGG + chr6_3:20902302-20902321 Msa0944190:intron 40.0%
GAACCAATATCTGACGATGA+TGG + chr6_3:20902774-20902793 Msa0944190:CDS 40.0%
!! CAATATCTGACGATGATGGA+CGG + chr6_3:20902778-20902797 Msa0944190:CDS 40.0%
!! AATATCTGACGATGATGGAC+GGG + chr6_3:20902779-20902798 Msa0944190:CDS 40.0%
GTAGAGTTTAACAAACCTCC+AGG + chr6_3:20902842-20902861 Msa0944190:intron 40.0%
GAACAAGATTAAGTACCTGG+AGG - chr6_3:20902860-20902879 None:intergenic 40.0%
AACCACTTGTGAGGCTATTT+GGG - chr6_3:20903292-20903311 None:intergenic 40.0%
AAACCACTTGTGAGGCTATT+TGG - chr6_3:20903293-20903312 None:intergenic 40.0%
ACTGGTATAAACCACTTGTG+AGG - chr6_3:20903301-20903320 None:intergenic 40.0%
CATTTATGTCAGGTGTAAGG+TGG - chr6_3:20903757-20903776 None:intergenic 40.0%
TTGATGAAGCTTCAAGGAGA+TGG + chr6_3:20903848-20903867 Msa0944190:three_prime_UTR 40.0%
!! GGCCATTTTAAAAGCTCAGT+TGG + chr6_3:20904164-20904183 Msa0944190:three_prime_UTR 40.0%
TCTCACTCAGCTCAAGAATG+AGG + chr6_3:20898268-20898287 Msa0944190:exon 45.0%
ATGTCTCTGCAACCACAACA+CGG - chr6_3:20898630-20898649 None:intergenic 45.0%
ATCAAAACCCTCTGATGTCG+CGG + chr6_3:20898648-20898667 Msa0944190:intron 45.0%
GTGATCAAAGGCTGCTGATA+TGG + chr6_3:20899004-20899023 Msa0944190:intron 45.0%
CATCAGGTAGAGCAATAGTC+AGG - chr6_3:20899436-20899455 None:intergenic 45.0%
TATTGCTCTACCTGATGCCA+AGG + chr6_3:20899439-20899458 Msa0944190:CDS 45.0%
ACAGAAACATCCTTGGCATC+AGG - chr6_3:20899452-20899471 None:intergenic 45.0%
GAGAAGGTAAACAAACCCTG+AGG - chr6_3:20899485-20899504 None:intergenic 45.0%
TTGAACCCTAGAAGCAGAGA+AGG - chr6_3:20899501-20899520 None:intergenic 45.0%
! TTACGGATCGATTCAACCTG+AGG + chr6_3:20899550-20899569 Msa0944190:CDS 45.0%
TTCATAGCCCGGACAACAAT+TGG - chr6_3:20899792-20899811 None:intergenic 45.0%
CCGCAATTGCAATCACAATG+TGG - chr6_3:20899827-20899846 None:intergenic 45.0%
AGAAAGGACAAAGAGGTTGG+TGG + chr6_3:20900045-20900064 Msa0944190:CDS 45.0%
!! GACAAAGAGGTTGGTGGAAA+AGG + chr6_3:20900051-20900070 Msa0944190:CDS 45.0%
! TCAACTTTCAGGTATGGTGC+AGG - chr6_3:20900098-20900117 None:intergenic 45.0%
GTCAGCAAAGAACCATGTGT+TGG - chr6_3:20900515-20900534 None:intergenic 45.0%
CATAAACTGCCACATGTGAC+GGG - chr6_3:20900737-20900756 None:intergenic 45.0%
!! TGTAAGTTTCTTTTGGGGGG+GGG + chr6_3:20900776-20900795 Msa0944190:intron 45.0%
GGGGGGGGTAATAGAATATT+AGG + chr6_3:20900802-20900821 Msa0944190:intron 45.0%
GAATGTTAGCAGGAATGGGA+AGG + chr6_3:20900906-20900925 Msa0944190:intron 45.0%
GAGACGTTAATCCTAGCAGT+TGG + chr6_3:20901204-20901223 Msa0944190:intron 45.0%
! GCAGTTGGCAAATTTTTGCC+TGG + chr6_3:20901219-20901238 Msa0944190:intron 45.0%
TGGCCTACCTTGAGTTTGAT+CGG + chr6_3:20901239-20901258 Msa0944190:intron 45.0%
GTTCCGATCAAACTCAAGGT+AGG - chr6_3:20901245-20901264 None:intergenic 45.0%
TCAGGTTCCGATCAAACTCA+AGG - chr6_3:20901249-20901268 None:intergenic 45.0%
ATCTCACGAGCTCAGAATCT+AGG - chr6_3:20901306-20901325 None:intergenic 45.0%
ACCTCGTCTATTAGCTGCTT+TGG + chr6_3:20901370-20901389 Msa0944190:intron 45.0%
! AGCTGCTTTGGCTAGTATAG+GGG + chr6_3:20901382-20901401 Msa0944190:intron 45.0%
GTGCCTACCATTGTTATCTC+TGG + chr6_3:20901506-20901525 Msa0944190:intron 45.0%
ACAACAAACAGATGGGCCAA+AGG + chr6_3:20901767-20901786 Msa0944190:intron 45.0%
TCGTGAGTCATACACAACGA+AGG + chr6_3:20901825-20901844 Msa0944190:intron 45.0%
! AGGTCGTGAGAGCATAATGT+TGG - chr6_3:20901910-20901929 None:intergenic 45.0%
GATGCAAAAGATGGCATGAC+TGG + chr6_3:20902087-20902106 Msa0944190:intron 45.0%
GGGAAGAGAAGGGGAAAAAT+AGG - chr6_3:20902178-20902197 None:intergenic 45.0%
ATGACTGAAGACAGACTGCA+GGG - chr6_3:20902199-20902218 None:intergenic 45.0%
TTACAGGGACCATGATGCTA+AGG - chr6_3:20902619-20902638 None:intergenic 45.0%
! ATGGTCCCTGTAATTTGCCT+TGG + chr6_3:20902626-20902645 Msa0944190:intron 45.0%
! TGGTCCCTGTAATTTGCCTT+GGG + chr6_3:20902627-20902646 Msa0944190:intron 45.0%
GACACCCAAGGCAAATTACA+GGG - chr6_3:20902634-20902653 None:intergenic 45.0%
TGACACCCAAGGCAAATTAC+AGG - chr6_3:20902635-20902654 None:intergenic 45.0%
ATTTGCCTTGGGTGTCAGAT+TGG + chr6_3:20902638-20902657 Msa0944190:intron 45.0%
TTGAACCAATCTGACACCCA+AGG - chr6_3:20902646-20902665 None:intergenic 45.0%
CGTCCATCATCGTCAGATAT+TGG - chr6_3:20902780-20902799 None:intergenic 45.0%
GATGAAAGCAGTGACGATGA+AGG + chr6_3:20902917-20902936 Msa0944190:CDS 45.0%
ACTTGTGAGGCTATTTGGGA+GGG - chr6_3:20903288-20903307 None:intergenic 45.0%
AGATAGAGCAGATGCATGCA+TGG - chr6_3:20903391-20903410 None:intergenic 45.0%
AGGTGTAAGGTGGGAATAAG+AGG - chr6_3:20903747-20903766 None:intergenic 45.0%
!! AGATCTCCCTGACTTGGAAA+AGG + chr6_3:20903790-20903809 Msa0944190:intron 45.0%
!! TGGAAGTGTTAGATAGGTGC+AGG + chr6_3:20903878-20903897 Msa0944190:three_prime_UTR 45.0%
!! GGAAGTGTTAGATAGGTGCA+GGG + chr6_3:20903879-20903898 Msa0944190:three_prime_UTR 45.0%
!! ATAAAAATAAATTGTTTAAA+AGG - chr6_3:20898932-20898951 None:intergenic 5.0%
! TTTTGACGATGGCCGTGTTG+CGG + chr6_3:20899027-20899046 Msa0944190:intron 50.0%
ACATTCAAAGGCAGCGGACA+CGG + chr6_3:20899205-20899224 Msa0944190:intron 50.0%
TTCCAATGTCTCTGCAGTCG+CGG - chr6_3:20899254-20899273 None:intergenic 50.0%
GCGACTTAGACTACAGTTCG+CGG + chr6_3:20899286-20899305 Msa0944190:intron 50.0%
TCGCCATCCAGAAGTTCTCT+GGG + chr6_3:20899388-20899407 Msa0944190:CDS 50.0%
TTCTGTGAAGTGTGAGCCTC+AGG + chr6_3:20899466-20899485 Msa0944190:CDS 50.0%
TCTGTGAAGTGTGAGCCTCA+GGG + chr6_3:20899467-20899486 Msa0944190:CDS 50.0%
TGACTACATTGCAGGACGGT+TGG - chr6_3:20900667-20900686 None:intergenic 50.0%
GCAGTGACTACATTGCAGGA+CGG - chr6_3:20900671-20900690 None:intergenic 50.0%
!!! CTTTTGAAGCCCGTCACATG+TGG + chr6_3:20900725-20900744 Msa0944190:intron 50.0%
!! GTAAGTTTCTTTTGGGGGGG+GGG + chr6_3:20900777-20900796 Msa0944190:intron 50.0%
!! TAAGTTTCTTTTGGGGGGGG+GGG + chr6_3:20900778-20900797 Msa0944190:intron 50.0%
ATGTGAAAAGGCTGAGGGTG+TGG + chr6_3:20901179-20901198 Msa0944190:intron 50.0%
GATCAAACTCAAGGTAGGCC+AGG - chr6_3:20901240-20901259 None:intergenic 50.0%
GCCAAAGCAGCTAATAGACG+AGG - chr6_3:20901374-20901393 None:intergenic 50.0%
! GCTGCTTTGGCTAGTATAGG+GGG + chr6_3:20901383-20901402 Msa0944190:intron 50.0%
GGTAGAGCAGGTAGATGAGA+AGG + chr6_3:20901407-20901426 Msa0944190:intron 50.0%
CAGGTAGATGAGAAGGACAC+AGG + chr6_3:20901414-20901433 Msa0944190:intron 50.0%
GTAGATGAGAAGGACACAGG+AGG + chr6_3:20901417-20901436 Msa0944190:intron 50.0%
AGAAGGACACAGGAGGTGAT+GGG + chr6_3:20901424-20901443 Msa0944190:intron 50.0%
ACCACGAGCGATTGAGATTG+CGG + chr6_3:20901591-20901610 Msa0944190:intron 50.0%
GCGATTGAGATTGCGGAGTT+TGG + chr6_3:20901598-20901617 Msa0944190:intron 50.0%
CACAGCAGTCACTCTTCTGT+AGG - chr6_3:20901641-20901660 None:intergenic 50.0%
TAAGGAGAGGAGGGTGGTTT+GGG - chr6_3:20901745-20901764 None:intergenic 50.0%
TTAAGGAGAGGAGGGTGGTT+TGG - chr6_3:20901746-20901765 None:intergenic 50.0%
TTGTGTTAAGGAGAGGAGGG+TGG - chr6_3:20901751-20901770 None:intergenic 50.0%
GACGACTATACTCGGATTCC+AGG + chr6_3:20901964-20901983 Msa0944190:intron 50.0%
TGACTGAAGACAGACTGCAG+GGG - chr6_3:20902198-20902217 None:intergenic 50.0%
GATGACTGAAGACAGACTGC+AGG - chr6_3:20902200-20902219 None:intergenic 50.0%
CACTTGTGAGGCTATTTGGG+AGG - chr6_3:20903289-20903308 None:intergenic 50.0%
CTCCCAAATAGCCTCACAAG+TGG + chr6_3:20903287-20903306 Msa0944190:intron 50.0%
TCTTGCAGATCTCCCTGACT+TGG + chr6_3:20903784-20903803 Msa0944190:intron 50.0%
!! TCCCTGACTTGGAAAAGGCT+AGG + chr6_3:20903795-20903814 Msa0944190:CDS 50.0%
!! CCCTAGCCTTTTCCAAGTCA+GGG - chr6_3:20903799-20903818 None:intergenic 50.0%
!! CCCTGACTTGGAAAAGGCTA+GGG + chr6_3:20903796-20903815 Msa0944190:CDS 50.0%
ATCTGAGCCGCGACATCAGA+GGG - chr6_3:20898658-20898677 None:intergenic 55.0%
AATCTGAGCCGCGACATCAG+AGG - chr6_3:20898659-20898678 None:intergenic 55.0%
CGCGGCTCATATTGTAGTCG+AGG + chr6_3:20898867-20898886 Msa0944190:intron 55.0%
CTCGACTACAAGCTGAGCTG+TGG - chr6_3:20899070-20899089 None:intergenic 55.0%
CACAGCTCAGCTTGTAGTCG+AGG + chr6_3:20899068-20899087 Msa0944190:intron 55.0%
GTCGCCATCCAGAAGTTCTC+TGG + chr6_3:20899387-20899406 Msa0944190:intron 55.0%
GTGCCCAGAGAACTTCTGGA+TGG - chr6_3:20899394-20899413 None:intergenic 55.0%
!! AAGTTTCTTTTGGGGGGGGG+GGG + chr6_3:20900779-20900798 Msa0944190:intron 55.0%
GCTTTGGCTAGTATAGGGGG+TGG + chr6_3:20901386-20901405 Msa0944190:intron 55.0%
AGTATAGGGGGTGGTAGAGC+AGG + chr6_3:20901395-20901414 Msa0944190:intron 55.0%
GAGAAGGACACAGGAGGTGA+TGG + chr6_3:20901423-20901442 Msa0944190:intron 55.0%
!! CAGGAGGTGATGGGTGTAGT+AGG + chr6_3:20901433-20901452 Msa0944190:intron 55.0%
TCCGCAATCTCAATCGCTCG+TGG - chr6_3:20901595-20901614 None:intergenic 55.0%
AGACTGCAGGGGAAGAGAAG+GGG - chr6_3:20902187-20902206 None:intergenic 55.0%
CAGACTGCAGGGGAAGAGAA+GGG - chr6_3:20902188-20902207 None:intergenic 55.0%
ACAGACTGCAGGGGAAGAGA+AGG - chr6_3:20902189-20902208 None:intergenic 55.0%
!! GCCCTAGCCTTTTCCAAGTC+AGG - chr6_3:20903800-20903819 None:intergenic 55.0%
! GGAATAGGTTGAGCCGAGCT+AGG + chr6_3:20904081-20904100 Msa0944190:three_prime_UTR 55.0%
GGACCTTGCATAGCCTAGCT+CGG - chr6_3:20904097-20904116 None:intergenic 55.0%
CGCGGCTCAGATTGTAGTCG+AGG + chr6_3:20898666-20898685 Msa0944190:intron 60.0%
CGCTGTGCCCAGAGAACTTC+TGG - chr6_3:20899398-20899417 None:intergenic 60.0%
GTTCTCTGGGCACAGCGTTC+TGG + chr6_3:20899401-20899420 Msa0944190:CDS 60.0%
CTGGGCACAGCGTTCTGGTA+AGG + chr6_3:20899406-20899425 Msa0944190:CDS 60.0%
!! AGTTTCTTTTGGGGGGGGGG+GGG + chr6_3:20900780-20900799 Msa0944190:intron 60.0%
! GAGGAGGGTGGTTTGGGTCA+GGG - chr6_3:20901739-20901758 None:intergenic 60.0%
! AGAGGAGGGTGGTTTGGGTC+AGG - chr6_3:20901740-20901759 None:intergenic 60.0%
TCGAGCGCAATGAGCGGAGA+GGG - chr6_3:20901797-20901816 None:intergenic 60.0%
AGTCGCTCGAGCGCAATGAG+CGG - chr6_3:20901803-20901822 None:intergenic 60.0%
GAGCCGAGCTAGGCTATGCA+AGG + chr6_3:20904091-20904110 Msa0944190:three_prime_UTR 60.0%
GGCCGCGACTGCAGAGACAT+TGG + chr6_3:20899249-20899268 Msa0944190:intron 65.0%
!! GTTTCTTTTGGGGGGGGGGG+GGG + chr6_3:20900781-20900800 Msa0944190:intron 65.0%
!! TTTCTTTTGGGGGGGGGGGG+GGG + chr6_3:20900782-20900801 Msa0944190:intron 65.0%
CTCGAGCGCAATGAGCGGAG+AGG - chr6_3:20901798-20901817 None:intergenic 65.0%
!! TTCTTTTGGGGGGGGGGGGG+GGG + chr6_3:20900783-20900802 Msa0944190:intron 70.0%
!! GAGCGGAGAGGGAGCGCCTT+TGG - chr6_3:20901786-20901805 None:intergenic 70.0%
!! TCTTTTGGGGGGGGGGGGGG+GGG + chr6_3:20900784-20900803 Msa0944190:intron 75.0%
!!! CTTTTGGGGGGGGGGGGGGG+GGG + chr6_3:20900785-20900804 Msa0944190:intron 80.0%
!!! TTTTGGGGGGGGGGGGGGGG+GGG + chr6_3:20900786-20900805 Msa0944190:intron 80.0%
! TTTGGGGGGGGGGGGGGGGG+GGG + chr6_3:20900787-20900806 Msa0944190:intron 85.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 20898220 20904195 20898220 ID=Msa0944190;Name=Msa0944190
chr6_3 mRNA 20898220 20904195 20898220 ID=Msa0944190-mRNA-1;Parent=Msa0944190;Name=Msa0944190-mRNA-1;_AED=0.08;_eAED=0.08;_QI=65|1|1|1|1|1|6|369|151
chr6_3 exon 20898220 20898289 20898220 ID=Msa0944190-mRNA-1:exon:6218;Parent=Msa0944190-mRNA-1
chr6_3 exon 20899388 20899571 20899388 ID=Msa0944190-mRNA-1:exon:6219;Parent=Msa0944190-mRNA-1
chr6_3 exon 20899999 20900155 20899999 ID=Msa0944190-mRNA-1:exon:6220;Parent=Msa0944190-mRNA-1
chr6_3 exon 20902772 20902800 20902772 ID=Msa0944190-mRNA-1:exon:6221;Parent=Msa0944190-mRNA-1
chr6_3 exon 20902902 20902947 20902902 ID=Msa0944190-mRNA-1:exon:6222;Parent=Msa0944190-mRNA-1
chr6_3 exon 20903792 20904195 20903792 ID=Msa0944190-mRNA-1:exon:6223;Parent=Msa0944190-mRNA-1
chr6_3 five_prime_UTR 20898220 20898284 20898220 ID=Msa0944190-mRNA-1:five_prime_utr;Parent=Msa0944190-mRNA-1
chr6_3 CDS 20898285 20898289 20898285 ID=Msa0944190-mRNA-1:cds;Parent=Msa0944190-mRNA-1
chr6_3 CDS 20899388 20899571 20899388 ID=Msa0944190-mRNA-1:cds;Parent=Msa0944190-mRNA-1
chr6_3 CDS 20899999 20900155 20899999 ID=Msa0944190-mRNA-1:cds;Parent=Msa0944190-mRNA-1
chr6_3 CDS 20902772 20902800 20902772 ID=Msa0944190-mRNA-1:cds;Parent=Msa0944190-mRNA-1
chr6_3 CDS 20902902 20902947 20902902 ID=Msa0944190-mRNA-1:cds;Parent=Msa0944190-mRNA-1
chr6_3 CDS 20903792 20903826 20903792 ID=Msa0944190-mRNA-1:cds;Parent=Msa0944190-mRNA-1
chr6_3 three_prime_UTR 20903827 20904195 20903827 ID=Msa0944190-mRNA-1:three_prime_utr;Parent=Msa0944190-mRNA-1
Gene Sequence

>Msa0944190

ATGAGTCGCCATCCAGAAGTTCTCTGGGCACAGCGTTCTGGTAAGGTTTACCTGACTATTGCTCTACCTGATGCCAAGGATGTTTCTGTGAAGTGTGAGCCTCAGGGTTTGTTTACCTTCTCTGCTTCTAGGGTTCAACATGAATCCTATAGCTTTAGCTTGGAACTTTACGGATCGATTCAACCTGAGGGTTGTAAAACTAAAACTGGCTCAAGAAACATACTATGCTCAATTCAGAAAGGACAAAGAGGTTGGTGGAAAAGGTTACTGAAGTCTGAAGAGAAACCTGCACCATACCTGAAAGTTGATTGGAATAAATGGTGTGATGAAGATGAAGAGTCAGAATCTGAACCAATATCTGACGATGATGGACGGTTTGCTGGTGAAGATGATGAAAGCAGTGACGATGAAGGAATGTTATATCTCCCTGACTTGGAAAAGGCTAGGGCAAAGTAA

Protein sequence

>Msa0944190

MSRHPEVLWAQRSGKVYLTIALPDAKDVSVKCEPQGLFTFSASRVQHESYSFSLELYGSIQPEGCKTKTGSRNILCSIQKGQRGWWKRLLKSEEKPAPYLKVDWNKWCDEDEESESEPISDDDGRFAGEDDESSDDEGMLYLPDLEKARAK*