AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0262310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262310 MtrunA17_Chr2g0324821 98.571 140 2 0 1 140 1 140 1.31e-100 284
Msa0262310 MtrunA17_Chr2g0282661 67.361 144 39 2 2 140 12 152 1.33e-65 196
Msa0262310 MtrunA17_Chr5g0413571 66.176 136 42 2 3 138 4 135 8.29e-59 178
Msa0262310 MtrunA17_Chr8g0365411 54.545 132 23 1 8 139 9 103 4.55e-44 140
Msa0262310 MtrunA17_Chr6g0476691 68.675 83 26 0 57 139 17 99 6.11e-38 124
Msa0262310 MtrunA17_Chr5g0438061 41.085 129 63 3 10 137 103 219 3.79e-22 87.8
Msa0262310 MtrunA17_Chr5g0438041 43.609 133 58 6 10 137 5 125 1.34e-21 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262310 AT2G33845.1 72.464 138 35 1 3 140 48 182 1.18e-69 207
Msa0262310 AT4G28440.1 69.630 135 39 1 5 137 15 149 1.96e-63 191
Msa0262310 AT1G23750.1 60.870 138 50 1 2 139 4 137 6.13e-60 181
Msa0262310 AT1G03810.1 68.217 129 40 1 7 135 14 141 1.65e-59 181
Msa0262310 AT1G10590.2 65.926 135 41 3 5 137 6 137 9.03e-58 176
Msa0262310 AT1G10590.1 65.926 135 41 3 5 137 6 137 9.03e-58 176
Msa0262310 AT1G10590.3 65.926 135 41 3 5 137 20 151 1.88e-57 176
Msa0262310 AT1G23750.2 69.474 95 29 0 45 139 6 100 5.67e-47 147

Find 46 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTGTACACGCAATAAAT+TGG 0.237468 2_2:-61138000 None:intergenic
TCCCTAACTTCAAAATTTGC+AGG 0.291394 2_2:-61137706 None:intergenic
AACACGAAGCTTTGAATCTA+TGG 0.308708 2_2:+61134705 Msa0262310:exon
AAAATATTTAACAATATTTA+CGG 0.310420 2_2:-61137977 None:intergenic
AGAGTGTGTCCATTGGTTCC+AGG 0.350948 2_2:-61134781 None:intergenic
CTCATTAGTTGAATATGAAT+TGG 0.360041 2_2:+61137741 Msa0262310:CDS
CTGCTGTGCAGGTTCATATA+TGG 0.396491 2_2:+61137854 Msa0262310:three_prime_UTR
CGCAGAATTAAAGTTGCACC+AGG 0.436054 2_2:-61137607 None:intergenic
CTATGAGGTTGGCAGTTGAT+AGG 0.440060 2_2:+61137659 Msa0262310:CDS
TCCTAACCGCGGTGGTCGAT+CGG 0.440345 2_2:+61134843 Msa0262310:CDS
CACTGTCAGAGTGTGTCCAT+TGG 0.463476 2_2:-61134788 None:intergenic
CGCATTGCTGAATGTCTCAT+TGG 0.467345 2_2:+61134889 Msa0262310:CDS
TGAGGTTGGCAGTTGATAGG+TGG 0.471269 2_2:+61137662 Msa0262310:CDS
TAATTCTTCGCCGGTGAAGA+CGG 0.477098 2_2:+61134819 Msa0262310:CDS
CAATTTATTGCGTGTACAGT+TGG 0.492134 2_2:+61138001 Msa0262310:three_prime_UTR
TGAACAATTGACTGCTGTGC+AGG 0.501881 2_2:+61137843 Msa0262310:three_prime_UTR
TGCTAAGATTGACATGTTCA+AGG 0.505137 2_2:+61137633 Msa0262310:CDS
GAGGTTGGCAGTTGATAGGT+GGG 0.510112 2_2:+61137663 Msa0262310:CDS
AAGGTCGATCAGCTGAAACC+TGG 0.513519 2_2:+61134763 Msa0262310:CDS
GCCGATCGACCACCGCGGTT+AGG 0.518836 2_2:-61134844 None:intergenic
CACAGCAGTCAATTGTTCAA+TGG 0.525303 2_2:-61137839 None:intergenic
CAGCTGAAACCTGGAACCAA+TGG 0.532250 2_2:+61134772 Msa0262310:CDS
AATGAGACATTCAGCAATGC+GGG 0.536511 2_2:-61134887 None:intergenic
TGATCGACCTTCACGAACAC+TGG 0.539292 2_2:-61134751 None:intergenic
CGGTTAGGAACCGTCTTCAC+CGG 0.552526 2_2:-61134829 None:intergenic
ATTTAGTCTTCAGATTGCTG+TGG 0.553100 2_2:+61137890 Msa0262310:three_prime_UTR
GAAGGTGGTTAATTCTTCGC+CGG 0.566549 2_2:+61134810 Msa0262310:CDS
ACATGTTCAAGGGATCTATG+AGG 0.578715 2_2:+61137644 Msa0262310:CDS
GCTAAGATTGACATGTTCAA+GGG 0.579635 2_2:+61137634 Msa0262310:CDS
GTTCAAGGGATCTATGAGGT+TGG 0.593452 2_2:+61137648 Msa0262310:CDS
TTCACTGCTCGCAATGAACA+AGG 0.601184 2_2:+61134934 Msa0262310:CDS
GGTTGGCAGTTGATAGGTGG+GGG 0.611083 2_2:+61137665 Msa0262310:CDS
AAGTTGCACCAGGGTTCATG+AGG 0.612434 2_2:-61137597 None:intergenic
TAACCGCGGTGGTCGATCGG+CGG 0.613647 2_2:+61134846 Msa0262310:CDS
AGGTTGGCAGTTGATAGGTG+GGG 0.635745 2_2:+61137664 Msa0262310:CDS
GCGAAAACCAGTGTTCGTGA+AGG 0.642463 2_2:+61134744 Msa0262310:CDS
AGACATTCAGCAATGCGGGA+AGG 0.647720 2_2:-61134883 None:intergenic
ACACACTCTGACAGTGAAGG+TGG 0.655149 2_2:+61134795 Msa0262310:CDS
TGGACACACTCTGACAGTGA+AGG 0.666395 2_2:+61134792 Msa0262310:CDS
CAATGAGACATTCAGCAATG+CGG 0.676023 2_2:-61134888 None:intergenic
GATCAATTGAAAATTGAACA+AGG 0.679889 2_2:-61134672 None:intergenic
GCAGTGGACCTCATGAACCC+TGG 0.684427 2_2:+61137589 Msa0262310:intron
AAGACGGTTCCTAACCGCGG+TGG 0.697992 2_2:+61134835 Msa0262310:CDS
GTGAAGACGGTTCCTAACCG+CGG 0.698190 2_2:+61134832 Msa0262310:CDS
GCAGAATTAAAGTTGCACCA+GGG 0.713466 2_2:-61137606 None:intergenic
TCACCGCCGATCGACCACCG+CGG 0.798992 2_2:-61134849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATCGTTGATTTTATA+TGG + chr2_2:61135107-61135126 Msa0262310:intron 15.0%
!!! ATGTGGTTTTTTATTTAATA+GGG - chr2_2:61135542-61135561 None:intergenic 15.0%
!!! AATGTGGTTTTTTATTTAAT+AGG - chr2_2:61135543-61135562 None:intergenic 15.0%
!!! ATGTGGTTTTTTATTTAATA+GGG - chr2_2:61135542-61135561 None:intergenic 15.0%
!!! AATGTGGTTTTTTATTTAAT+AGG - chr2_2:61135543-61135562 None:intergenic 15.0%
!!! AATGTGGTTTTTTTTTTTTA+AGG + chr2_2:61136413-61136432 Msa0262310:intron 15.0%
!!! ATGTGGTTTTTTTTTTTTAA+GGG + chr2_2:61136414-61136433 Msa0262310:intron 15.0%
!!! GTTGATTTTATATGGTTTTA+TGG + chr2_2:61135115-61135134 Msa0262310:intron 20.0%
!!! TTTATGGATATTTTTTGTTG+TGG + chr2_2:61135131-61135150 Msa0262310:intron 20.0%
!!! TGTGGTTTTTTATTTAATAG+GGG - chr2_2:61135541-61135560 None:intergenic 20.0%
!!! GAATGTGGTTTTTTTTTTAA+GGG + chr2_2:61135788-61135807 Msa0262310:intron 20.0%
!!! CTTTTCTCATAAAATAAATG+GGG - chr2_2:61135863-61135882 None:intergenic 20.0%
!!! GCTTTTCTCATAAAATAAAT+GGG - chr2_2:61135864-61135883 None:intergenic 20.0%
!!! AGCTTTTCTCATAAAATAAA+TGG - chr2_2:61135865-61135884 None:intergenic 20.0%
!! ATTGATTATACGAAAAAAGT+TGG + chr2_2:61135886-61135905 Msa0262310:intron 20.0%
!!! TGTGGTTTTTTATTTAATAG+GGG - chr2_2:61135541-61135560 None:intergenic 20.0%
!! AGAGAATAATTGCTAAATTT+AGG - chr2_2:61136478-61136497 None:intergenic 20.0%
!!! AACATTTCCCTTTTTTTAAT+AGG + chr2_2:61136599-61136618 Msa0262310:intron 20.0%
!!! ACATTTCCCTTTTTTTAATA+GGG + chr2_2:61136600-61136619 Msa0262310:intron 20.0%
!!! AGTTTATGTCTATTGTTTTT+TGG + chr2_2:61136662-61136681 Msa0262310:intron 20.0%
!! ATTACATAAAAAGCTTATTC+GGG - chr2_2:61136728-61136747 None:intergenic 20.0%
!! CATTACATAAAAAGCTTATT+CGG - chr2_2:61136729-61136748 None:intergenic 20.0%
!!! GAATAAGCTTTTTATGTAAT+GGG + chr2_2:61136728-61136747 Msa0262310:intron 20.0%
! GATCAATTGAAAATTGAACA+AGG - chr2_2:61134675-61134694 None:intergenic 25.0%
!! TGTTTCATTTCTAAGCATTT+TGG + chr2_2:61134973-61134992 Msa0262310:intron 25.0%
!!! GAAAGAGTACTTAATTCTTA+AGG + chr2_2:61135000-61135019 Msa0262310:intron 25.0%
!!! CTCATTGATTGTGTTAATTT+TGG + chr2_2:61135066-61135085 Msa0262310:intron 25.0%
! GAACTTATGAAAATTGCTTA+TGG + chr2_2:61135174-61135193 Msa0262310:intron 25.0%
! ATTGATTATACGAAAACAGT+TGG + chr2_2:61135262-61135281 Msa0262310:intron 25.0%
! AATAAGTTGTTTATCCATAC+AGG + chr2_2:61135430-61135449 Msa0262310:intron 25.0%
! ATAAGTTGTTTATCCATACA+GGG + chr2_2:61135431-61135450 Msa0262310:intron 25.0%
!!! GTGGTTTTTTATTTAATAGG+GGG - chr2_2:61135540-61135559 None:intergenic 25.0%
! AAAATTGAAAGTTGCAAAAG+GGG - chr2_2:61135585-61135604 None:intergenic 25.0%
! CAAAATTGAAAGTTGCAAAA+GGG - chr2_2:61135586-61135605 None:intergenic 25.0%
! TCAAAATTGAAAGTTGCAAA+AGG - chr2_2:61135587-61135606 None:intergenic 25.0%
!!! GTTGTTTTTACTGTTTTGAA+TGG - chr2_2:61135624-61135643 None:intergenic 25.0%
! TTCAAAACAGTAAAAACAAC+TGG + chr2_2:61135624-61135643 Msa0262310:intron 25.0%
! TCAAAACAGTAAAAACAACT+GGG + chr2_2:61135625-61135644 Msa0262310:intron 25.0%
! GATTTATAGGGAAAAGAATA+TGG + chr2_2:61135670-61135689 Msa0262310:intron 25.0%
!!! GGAATGTGGTTTTTTTTTTA+AGG + chr2_2:61135787-61135806 Msa0262310:intron 25.0%
! AAATAAATGGGGCTAAATTT+AGG - chr2_2:61135852-61135871 None:intergenic 25.0%
! ATTATACGAAAAAAGTTGGA+GGG + chr2_2:61135890-61135909 Msa0262310:intron 25.0%
! AATAAGTTGTTTATCCATAC+AGG + chr2_2:61135430-61135449 Msa0262310:intron 25.0%
! ATAAGTTGTTTATCCATACA+GGG + chr2_2:61135431-61135450 Msa0262310:intron 25.0%
!!! GTGGTTTTTTATTTAATAGG+GGG - chr2_2:61135540-61135559 None:intergenic 25.0%
! AAAATTGAAAGTTGCAAAAG+GGG - chr2_2:61135585-61135604 None:intergenic 25.0%
! CAAAATTGAAAGTTGCAAAA+GGG - chr2_2:61135586-61135605 None:intergenic 25.0%
! TCAAAATTGAAAGTTGCAAA+AGG - chr2_2:61135587-61135606 None:intergenic 25.0%
!!! GTTGTTTTTACTGTTTTGAA+TGG - chr2_2:61135624-61135643 None:intergenic 25.0%
! TTCAAAACAGTAAAAACAAC+TGG + chr2_2:61135624-61135643 Msa0262310:intron 25.0%
! TCAAAACAGTAAAAACAACT+GGG + chr2_2:61135625-61135644 Msa0262310:intron 25.0%
! GATTTATAGGGAAAAGAATA+TGG + chr2_2:61135670-61135689 Msa0262310:intron 25.0%
!!! CATTTCCCTTTTTTTAATAG+GGG + chr2_2:61136601-61136620 Msa0262310:intron 25.0%
!!! ATTTCCCTTTTTTTAATAGG+GGG + chr2_2:61136602-61136621 Msa0262310:intron 25.0%
!! CGAATAAGCTTTTTATGTAA+TGG + chr2_2:61136727-61136746 Msa0262310:intron 25.0%
! AACAAATACTGTAACACAAT+AGG - chr2_2:61136890-61136909 None:intergenic 25.0%
! AAAAACATAACACATGAGAA+TGG - chr2_2:61137256-61137275 None:intergenic 25.0%
!! TATTTTGCCTTTTCAAACTT+TGG + chr2_2:61137321-61137340 Msa0262310:intron 25.0%
!! ATTTTGCCTTTTCAAACTTT+GGG + chr2_2:61137322-61137341 Msa0262310:intron 25.0%
!!! ATTCATTTACTTTTATGCAG+TGG + chr2_2:61137573-61137592 Msa0262310:intron 25.0%
! CTCATTAGTTGAATATGAAT+TGG + chr2_2:61137741-61137760 Msa0262310:CDS 25.0%
! TTCAATGGTCAAACTAAAAA+TGG - chr2_2:61137827-61137846 None:intergenic 25.0%
ATTATACGAAAACAGTTGGA+GGG + chr2_2:61135266-61135285 Msa0262310:intron 30.0%
TATGTATTTGTGAGACTGTT+TGG + chr2_2:61135327-61135346 Msa0262310:intron 30.0%
ATGTATTTGTGAGACTGTTT+GGG + chr2_2:61135328-61135347 Msa0262310:intron 30.0%
AAGACTCGAATGCATTAATA+TGG - chr2_2:61135457-61135476 None:intergenic 30.0%
GAATTGGGTTAAAGTGATAT+TGG + chr2_2:61135492-61135511 Msa0262310:intron 30.0%
AAATTGAAAGTTGCAAAAGG+GGG - chr2_2:61135584-61135603 None:intergenic 30.0%
CAAAACAGTAAAAACAACTG+GGG + chr2_2:61135626-61135645 Msa0262310:intron 30.0%
TGAGCAAGTTTCAGATTTAT+AGG + chr2_2:61135657-61135676 Msa0262310:intron 30.0%
GAGCAAGTTTCAGATTTATA+GGG + chr2_2:61135658-61135677 Msa0262310:intron 30.0%
TCAAAATTCAAAGTTGCGAA+AGG + chr2_2:61135746-61135765 Msa0262310:intron 30.0%
GATTATACGAAAAAAGTTGG+AGG + chr2_2:61135889-61135908 Msa0262310:intron 30.0%
TATGTATTTGTGAGACTGTT+TGG + chr2_2:61135327-61135346 Msa0262310:intron 30.0%
ATGTATTTGTGAGACTGTTT+GGG + chr2_2:61135328-61135347 Msa0262310:intron 30.0%
AAGACTCGAATGCATTAATA+TGG - chr2_2:61135457-61135476 None:intergenic 30.0%
GAATTGGGTTAAAGTGATAT+TGG + chr2_2:61135492-61135511 Msa0262310:intron 30.0%
AAATTGAAAGTTGCAAAAGG+GGG - chr2_2:61135584-61135603 None:intergenic 30.0%
CAAAACAGTAAAAACAACTG+GGG + chr2_2:61135626-61135645 Msa0262310:intron 30.0%
TGAGCAAGTTTCAGATTTAT+AGG + chr2_2:61135657-61135676 Msa0262310:intron 30.0%
GAGCAAGTTTCAGATTTATA+GGG + chr2_2:61135658-61135677 Msa0262310:intron 30.0%
TCAAAATTCAAAGTTGCGAA+AGG + chr2_2:61135746-61135765 Msa0262310:intron 30.0%
AAGTTGTGTATTGAATGCAT+TGG - chr2_2:61136524-61136543 None:intergenic 30.0%
TTTGCCCCCTATTAAAAAAA+GGG - chr2_2:61136609-61136628 None:intergenic 30.0%
! TTTTGCCCCCTATTAAAAAA+AGG - chr2_2:61136610-61136629 None:intergenic 30.0%
AATAGGTTTAACTGTTCAAC+AGG - chr2_2:61136873-61136892 None:intergenic 30.0%
TACAGTATTTGTTTGACATG+TGG + chr2_2:61136897-61136916 Msa0262310:intron 30.0%
ACAGTATTTGTTTGACATGT+GGG + chr2_2:61136898-61136917 Msa0262310:intron 30.0%
GTGATGTTACTGTGATTTAT+AGG + chr2_2:61137052-61137071 Msa0262310:intron 30.0%
TGATTTATAGGAATCAGTGT+GGG + chr2_2:61137064-61137083 Msa0262310:intron 30.0%
ATAGTGATGTTGCATAAATC+AGG + chr2_2:61137138-61137157 Msa0262310:intron 30.0%
TAGTGATGTTGCATAAATCA+GGG + chr2_2:61137139-61137158 Msa0262310:intron 30.0%
!! AAACTTTGGGTTGGATTTAT+TGG + chr2_2:61137335-61137354 Msa0262310:intron 30.0%
GGTATCAGTGAATTTCTATA+TGG + chr2_2:61137360-61137379 Msa0262310:intron 30.0%
GAATACACTTTCAATCGAAA+CGG - chr2_2:61137386-61137405 None:intergenic 30.0%
!! CTTTTGTTTCTTGCTTGTTT+TGG + chr2_2:61137506-61137525 Msa0262310:intron 30.0%
TTTGGAAGATGATATCAGTT+TGG + chr2_2:61137524-61137543 Msa0262310:intron 30.0%
!!! AACCTGCAAATTTTGAAGTT+AGG + chr2_2:61137704-61137723 Msa0262310:CDS 30.0%
!!! ACCTGCAAATTTTGAAGTTA+GGG + chr2_2:61137705-61137724 Msa0262310:CDS 30.0%
! TGAAGCGAATCTTTTGAATT+TGG + chr2_2:61137794-61137813 Msa0262310:three_prime_UTR 30.0%
!! AACACGAAGCTTTGAATCTA+TGG + chr2_2:61134705-61134724 Msa0262310:exon 35.0%
TGAGCAACAAAACGTAATCA+CGG - chr2_2:61135050-61135069 None:intergenic 35.0%
GATTATACGAAAACAGTTGG+AGG + chr2_2:61135265-61135284 Msa0262310:intron 35.0%
! TCGAGTCTTTTTACAAGATG+TGG + chr2_2:61135468-61135487 Msa0262310:intron 35.0%
! CGAGTCTTTTTACAAGATGT+GGG + chr2_2:61135469-61135488 Msa0262310:intron 35.0%
! GAGTCTTTTTACAAGATGTG+GGG + chr2_2:61135470-61135489 Msa0262310:intron 35.0%
! TTTTACAAGATGTGGGGAAT+TGG + chr2_2:61135476-61135495 Msa0262310:intron 35.0%
TTTACAAGATGTGGGGAATT+GGG + chr2_2:61135477-61135496 Msa0262310:intron 35.0%
! GGGTTAAAGTGATATTGGTT+CGG + chr2_2:61135497-61135516 Msa0262310:intron 35.0%
AATTGAAAGTTGCAAAAGGG+GGG - chr2_2:61135583-61135602 None:intergenic 35.0%
TAGGGAAAAGAATATGGCTT+AGG + chr2_2:61135676-61135695 Msa0262310:intron 35.0%
AAAAGAATATGGCTTAGGAC+TGG + chr2_2:61135681-61135700 Msa0262310:intron 35.0%
TGATCTTCTACTGTCTTGAA+TGG + chr2_2:61135709-61135728 Msa0262310:intron 35.0%
AAATTCAAAGTTGCGAAAGG+AGG + chr2_2:61135749-61135768 Msa0262310:intron 35.0%
AATTCAAAGTTGCGAAAGGA+GGG + chr2_2:61135750-61135769 Msa0262310:intron 35.0%
! AAAAAGTTGGAGGGTTTGTT+TGG + chr2_2:61135899-61135918 Msa0262310:intron 35.0%
! AAAAGTTGGAGGGTTTGTTT+GGG + chr2_2:61135900-61135919 Msa0262310:intron 35.0%
! TCGAGTCTTTTTACAAGATG+TGG + chr2_2:61135468-61135487 Msa0262310:intron 35.0%
! CGAGTCTTTTTACAAGATGT+GGG + chr2_2:61135469-61135488 Msa0262310:intron 35.0%
! GAGTCTTTTTACAAGATGTG+GGG + chr2_2:61135470-61135489 Msa0262310:intron 35.0%
! TTTTACAAGATGTGGGGAAT+TGG + chr2_2:61135476-61135495 Msa0262310:intron 35.0%
TTTACAAGATGTGGGGAATT+GGG + chr2_2:61135477-61135496 Msa0262310:intron 35.0%
! GGGTTAAAGTGATATTGGTT+CGG + chr2_2:61135497-61135516 Msa0262310:intron 35.0%
AATTGAAAGTTGCAAAAGGG+GGG - chr2_2:61135583-61135602 None:intergenic 35.0%
TAGGGAAAAGAATATGGCTT+AGG + chr2_2:61135676-61135695 Msa0262310:intron 35.0%
AAAAGAATATGGCTTAGGAC+TGG + chr2_2:61135681-61135700 Msa0262310:intron 35.0%
TGATCTTCTACTGTCTTGAA+TGG + chr2_2:61135709-61135728 Msa0262310:intron 35.0%
AAATTCAAAGTTGCGAAAGG+AGG + chr2_2:61135749-61135768 Msa0262310:intron 35.0%
AATTCAAAGTTGCGAAAGGA+GGG + chr2_2:61135750-61135769 Msa0262310:intron 35.0%
AATAGACATAAACTCACTCG+TGG - chr2_2:61136656-61136675 None:intergenic 35.0%
!!! TTTTTGGTTTCTGCCAATGT+TGG + chr2_2:61136678-61136697 Msa0262310:intron 35.0%
!!! TTTTGGTTTCTGCCAATGTT+GGG + chr2_2:61136679-61136698 Msa0262310:intron 35.0%
ATCATTACAACACTCTAGCT+CGG - chr2_2:61136805-61136824 None:intergenic 35.0%
AATGAATTTGGGCAACACTA+TGG - chr2_2:61136832-61136851 None:intergenic 35.0%
ATAGTGTTGCCCAAATTCAT+TGG + chr2_2:61136831-61136850 Msa0262310:intron 35.0%
CCATACCATCCAATGAATTT+GGG - chr2_2:61136843-61136862 None:intergenic 35.0%
TCCATACCATCCAATGAATT+TGG - chr2_2:61136844-61136863 None:intergenic 35.0%
CAGTATTTGTTTGACATGTG+GGG + chr2_2:61136899-61136918 Msa0262310:intron 35.0%
GTGTAAAAAGAAGTGGTGAA+AGG + chr2_2:61136925-61136944 Msa0262310:intron 35.0%
AAAGAAGTGGTGAAAGGTTA+TGG + chr2_2:61136931-61136950 Msa0262310:intron 35.0%
! TATGGATGATCTTTGTTGTC+TGG + chr2_2:61136949-61136968 Msa0262310:intron 35.0%
ATGTGCTTGGTTATGATTAG+AGG + chr2_2:61136982-61137001 Msa0262310:intron 35.0%
GTGATTTATAGGAATCAGTG+TGG + chr2_2:61137063-61137082 Msa0262310:intron 35.0%
GATTTATAGGAATCAGTGTG+GGG + chr2_2:61137065-61137084 Msa0262310:intron 35.0%
! GGTTGCTATTGCAAAAGAAT+GGG + chr2_2:61137086-61137105 Msa0262310:intron 35.0%
AGTGATGTTGCATAAATCAG+GGG + chr2_2:61137140-61137159 Msa0262310:intron 35.0%
!! TCTCGTGATGTGTTTTTGTT+TGG + chr2_2:61137214-61137233 Msa0262310:intron 35.0%
GAAAAGGCAAAATATACACG+CGG - chr2_2:61137315-61137334 None:intergenic 35.0%
ATCCAACCCAAAGTTTGAAA+AGG - chr2_2:61137331-61137350 None:intergenic 35.0%
!! TTTGGGTTGGATTTATTGGA+TGG + chr2_2:61137339-61137358 Msa0262310:intron 35.0%
TAATGTAGAGTAAGTTGCAC+TGG + chr2_2:61137423-61137442 Msa0262310:intron 35.0%
GCATTTAGACAAAGCACAAA+AGG - chr2_2:61137487-61137506 None:intergenic 35.0%
TGCTAAGATTGACATGTTCA+AGG + chr2_2:61137633-61137652 Msa0262310:CDS 35.0%
GCTAAGATTGACATGTTCAA+GGG + chr2_2:61137634-61137653 Msa0262310:CDS 35.0%
TCCCTAACTTCAAAATTTGC+AGG - chr2_2:61137709-61137728 None:intergenic 35.0%
! AGCGAATCTTTTGAATTTGG+AGG + chr2_2:61137797-61137816 Msa0262310:three_prime_UTR 35.0%
! GCGAATCTTTTGAATTTGGA+GGG + chr2_2:61137798-61137817 Msa0262310:three_prime_UTR 35.0%
! CGAATCTTTTGAATTTGGAG+GGG + chr2_2:61137799-61137818 Msa0262310:three_prime_UTR 35.0%
! ATTTAGTCTTCAGATTGCTG+TGG + chr2_2:61137890-61137909 Msa0262310:three_prime_UTR 35.0%
CAACTGTACACGCAATAAAT+TGG - chr2_2:61138003-61138022 None:intergenic 35.0%
CAATTTATTGCGTGTACAGT+TGG + chr2_2:61138001-61138020 Msa0262310:three_prime_UTR 35.0%
AATGAGACATTCAGCAATGC+GGG - chr2_2:61134890-61134909 None:intergenic 40.0%
CAATGAGACATTCAGCAATG+CGG - chr2_2:61134891-61134910 None:intergenic 40.0%
! TGTGGCATTGTGAGAGTTTT+TGG + chr2_2:61135149-61135168 Msa0262310:intron 40.0%
! AAACAGTTGGAGGGTTTGTT+TGG + chr2_2:61135275-61135294 Msa0262310:intron 40.0%
! AACAGTTGGAGGGTTTGTTT+GGG + chr2_2:61135276-61135295 Msa0262310:intron 40.0%
TGCATTAATATGGCCCTGTA+TGG - chr2_2:61135447-61135466 None:intergenic 40.0%
! GTTCGGCTTAAACACACTTT+TGG + chr2_2:61135514-61135533 Msa0262310:intron 40.0%
TGCATTAATATGGCCCTGTA+TGG - chr2_2:61135447-61135466 None:intergenic 40.0%
! GTTCGGCTTAAACACACTTT+TGG + chr2_2:61135514-61135533 Msa0262310:intron 40.0%
CTTCTACTGTCTTGAATGGT+CGG + chr2_2:61135713-61135732 Msa0262310:intron 40.0%
!! AAAGTGTTTAAAGAGTGCCC+CGG + chr2_2:61136565-61136584 Msa0262310:intron 40.0%
!! TATTCGGGAAAGTGTCAGTT+AGG - chr2_2:61136713-61136732 None:intergenic 40.0%
TGTTGCCCAAATTCATTGGA+TGG + chr2_2:61136835-61136854 Msa0262310:intron 40.0%
CCCAAATTCATTGGATGGTA+TGG + chr2_2:61136840-61136859 Msa0262310:intron 40.0%
! GGGGAAAGTGTAAAAAGAAG+TGG + chr2_2:61136918-61136937 Msa0262310:intron 40.0%
TGCTTGGTTATGATTAGAGG+AGG + chr2_2:61136985-61137004 Msa0262310:intron 40.0%
TCACAGTAACATCACATGCA+AGG - chr2_2:61137047-61137066 None:intergenic 40.0%
! GGGTTGCTATTGCAAAAGAA+TGG + chr2_2:61137085-61137104 Msa0262310:intron 40.0%
TGCTATTGCAAAAGAATGGG+TGG + chr2_2:61137089-61137108 Msa0262310:intron 40.0%
AAACACATCACGAGATTGAC+AGG - chr2_2:61137209-61137228 None:intergenic 40.0%
! TGCCTTTTCAAACTTTGGGT+TGG + chr2_2:61137326-61137345 Msa0262310:intron 40.0%
! ACTCTACATTAGCTTCAGAG+TGG - chr2_2:61137414-61137433 None:intergenic 40.0%
TGGCTGTTATATCATATCCG+TGG + chr2_2:61137443-61137462 Msa0262310:intron 40.0%
TGTGCTAAGGAATAGAACCA+CGG - chr2_2:61137463-61137482 None:intergenic 40.0%
AAGCACAAAAGGATGTGCTA+AGG - chr2_2:61137476-61137495 None:intergenic 40.0%
GCAGAATTAAAGTTGCACCA+GGG - chr2_2:61137609-61137628 None:intergenic 40.0%
ACATGTTCAAGGGATCTATG+AGG + chr2_2:61137644-61137663 Msa0262310:CDS 40.0%
CACAGCAGTCAATTGTTCAA+TGG - chr2_2:61137842-61137861 None:intergenic 40.0%
GAAGGTGGTTAATTCTTCGC+CGG + chr2_2:61134810-61134829 Msa0262310:CDS 45.0%
TAATTCTTCGCCGGTGAAGA+CGG + chr2_2:61134819-61134838 Msa0262310:CDS 45.0%
CGCATTGCTGAATGTCTCAT+TGG + chr2_2:61134889-61134908 Msa0262310:CDS 45.0%
TTCACTGCTCGCAATGAACA+AGG + chr2_2:61134934-61134953 Msa0262310:CDS 45.0%
TGCAAAAGGGGGGAAACTTA+GGG - chr2_2:61135573-61135592 None:intergenic 45.0%
TTGCAAAAGGGGGGAAACTT+AGG - chr2_2:61135574-61135593 None:intergenic 45.0%
CGAAAGGAGGGAAACTTAGA+GGG + chr2_2:61135762-61135781 Msa0262310:intron 45.0%
AAACTTAGAGGGCTGGAATG+TGG + chr2_2:61135773-61135792 Msa0262310:intron 45.0%
TGCAAAAGGGGGGAAACTTA+GGG - chr2_2:61135573-61135592 None:intergenic 45.0%
TTGCAAAAGGGGGGAAACTT+AGG - chr2_2:61135574-61135593 None:intergenic 45.0%
CGAAAGGAGGGAAACTTAGA+GGG + chr2_2:61135762-61135781 Msa0262310:intron 45.0%
AAACTTAGAGGGCTGGAATG+TGG + chr2_2:61135773-61135792 Msa0262310:intron 45.0%
!! AAGTGTTTAAAGAGTGCCCC+GGG + chr2_2:61136566-61136585 Msa0262310:intron 45.0%
ATCGCAACTTGTGCGAAGTT+AGG + chr2_2:61136629-61136648 Msa0262310:intron 45.0%
TCGCAACTTGTGCGAAGTTA+GGG + chr2_2:61136630-61136649 Msa0262310:intron 45.0%
TAGGACACTAGTCCCAACAT+TGG - chr2_2:61136694-61136713 None:intergenic 45.0%
! ACTCTAGCTCGGATGCATAT+GGG - chr2_2:61136794-61136813 None:intergenic 45.0%
! TGGTTTGTGCATGATGTGCT+TGG + chr2_2:61136969-61136988 Msa0262310:intron 45.0%
CATCACATGCAAGGAACTCA+AGG - chr2_2:61137038-61137057 None:intergenic 45.0%
TTGCAAAAGAATGGGTGGTG+TGG + chr2_2:61137094-61137113 Msa0262310:intron 45.0%
! TGGGTGGTGTGGCTATATTT+TGG + chr2_2:61137105-61137124 Msa0262310:intron 45.0%
CCGCAACAGGCAGAAAAAAA+CGG - chr2_2:61137181-61137200 None:intergenic 45.0%
!!! CCGTTTTTTTCTGCCTGTTG+CGG + chr2_2:61137178-61137197 Msa0262310:intron 45.0%
!!! TTTTTTTCTGCCTGTTGCGG+TGG + chr2_2:61137181-61137200 Msa0262310:intron 45.0%
CGCAGAATTAAAGTTGCACC+AGG - chr2_2:61137610-61137629 None:intergenic 45.0%
GTTCAAGGGATCTATGAGGT+TGG + chr2_2:61137648-61137667 Msa0262310:CDS 45.0%
CTATGAGGTTGGCAGTTGAT+AGG + chr2_2:61137659-61137678 Msa0262310:CDS 45.0%
TGAACAATTGACTGCTGTGC+AGG + chr2_2:61137843-61137862 Msa0262310:three_prime_UTR 45.0%
CTGCTGTGCAGGTTCATATA+TGG + chr2_2:61137854-61137873 Msa0262310:three_prime_UTR 45.0%
!! AAAATATTTAACAATATTTA+CGG - chr2_2:61137980-61137999 None:intergenic 5.0%
GCGAAAACCAGTGTTCGTGA+AGG + chr2_2:61134744-61134763 Msa0262310:CDS 50.0%
TGATCGACCTTCACGAACAC+TGG - chr2_2:61134754-61134773 None:intergenic 50.0%
AAGGTCGATCAGCTGAAACC+TGG + chr2_2:61134763-61134782 Msa0262310:CDS 50.0%
CAGCTGAAACCTGGAACCAA+TGG + chr2_2:61134772-61134791 Msa0262310:CDS 50.0%
!! AGAGTGTGTCCATTGGTTCC+AGG - chr2_2:61134784-61134803 None:intergenic 50.0%
CACTGTCAGAGTGTGTCCAT+TGG - chr2_2:61134791-61134810 None:intergenic 50.0%
TGGACACACTCTGACAGTGA+AGG + chr2_2:61134792-61134811 Msa0262310:CDS 50.0%
ACACACTCTGACAGTGAAGG+TGG + chr2_2:61134795-61134814 Msa0262310:CDS 50.0%
AGACATTCAGCAATGCGGGA+AGG - chr2_2:61134886-61134905 None:intergenic 50.0%
! GTTGGAGGGTTTGTTTGGGT+TGG + chr2_2:61135280-61135299 Msa0262310:intron 50.0%
AAAAGGGGGGAAACTTAGGG+GGG - chr2_2:61135570-61135589 None:intergenic 50.0%
CAAAAGGGGGGAAACTTAGG+GGG - chr2_2:61135571-61135590 None:intergenic 50.0%
GCAAAAGGGGGGAAACTTAG+GGG - chr2_2:61135572-61135591 None:intergenic 50.0%
GCGAAAGGAGGGAAACTTAG+AGG + chr2_2:61135761-61135780 Msa0262310:intron 50.0%
!! AGGATGCTTAAAGAGTGCCC+CGG - chr2_2:61135832-61135851 None:intergenic 50.0%
! GTTGGAGGGTTTGTTTGGGT+TGG + chr2_2:61135280-61135299 Msa0262310:intron 50.0%
AAAAGGGGGGAAACTTAGGG+GGG - chr2_2:61135570-61135589 None:intergenic 50.0%
CAAAAGGGGGGAAACTTAGG+GGG - chr2_2:61135571-61135590 None:intergenic 50.0%
GCAAAAGGGGGGAAACTTAG+GGG - chr2_2:61135572-61135591 None:intergenic 50.0%
GCGAAAGGAGGGAAACTTAG+AGG + chr2_2:61135761-61135780 Msa0262310:intron 50.0%
!! AGGATGCTTAAAGAGTGCCC+CGG - chr2_2:61135832-61135851 None:intergenic 50.0%
!! AGTGTTTAAAGAGTGCCCCG+GGG + chr2_2:61136567-61136586 Msa0262310:intron 50.0%
AAATGTTAACGAGTGCCCCC+GGG - chr2_2:61136586-61136605 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG - chr2_2:61136587-61136606 None:intergenic 50.0%
! CACTCTAGCTCGGATGCATA+TGG - chr2_2:61136795-61136814 None:intergenic 50.0%
GTTGCATAAATCAGGGGCAG+CGG + chr2_2:61137146-61137165 Msa0262310:intron 50.0%
TTGCATAAATCAGGGGCAGC+GGG + chr2_2:61137147-61137166 Msa0262310:intron 50.0%
AAGTTGCACCAGGGTTCATG+AGG - chr2_2:61137600-61137619 None:intergenic 50.0%
!! TGAGGTTGGCAGTTGATAGG+TGG + chr2_2:61137662-61137681 Msa0262310:CDS 50.0%
!! GAGGTTGGCAGTTGATAGGT+GGG + chr2_2:61137663-61137682 Msa0262310:CDS 50.0%
!! AGGTTGGCAGTTGATAGGTG+GGG + chr2_2:61137664-61137683 Msa0262310:CDS 50.0%
CGGTTAGGAACCGTCTTCAC+CGG - chr2_2:61134832-61134851 None:intergenic 55.0%
GTGAAGACGGTTCCTAACCG+CGG + chr2_2:61134832-61134851 Msa0262310:CDS 55.0%
AACTTAGGGGGGCTGGAATG+TGG - chr2_2:61135559-61135578 None:intergenic 55.0%
AGGAGGGAAACTTAGAGGGC+TGG + chr2_2:61135766-61135785 Msa0262310:intron 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG + chr2_2:61135810-61135829 Msa0262310:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG + chr2_2:61135811-61135830 Msa0262310:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG - chr2_2:61135829-61135848 None:intergenic 55.0%
!! GATGCTTAAAGAGTGCCCCG+GGG - chr2_2:61135830-61135849 None:intergenic 55.0%
!! GGATGCTTAAAGAGTGCCCC+GGG - chr2_2:61135831-61135850 None:intergenic 55.0%
AACTTAGGGGGGCTGGAATG+TGG - chr2_2:61135559-61135578 None:intergenic 55.0%
AGGAGGGAAACTTAGAGGGC+TGG + chr2_2:61135766-61135785 Msa0262310:intron 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG + chr2_2:61135810-61135829 Msa0262310:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG + chr2_2:61135811-61135830 Msa0262310:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG - chr2_2:61135829-61135848 None:intergenic 55.0%
!! GATGCTTAAAGAGTGCCCCG+GGG - chr2_2:61135830-61135849 None:intergenic 55.0%
!! GGATGCTTAAAGAGTGCCCC+GGG - chr2_2:61135831-61135850 None:intergenic 55.0%
!! GTGTTTAAAGAGTGCCCCGG+GGG + chr2_2:61136568-61136587 Msa0262310:intron 55.0%
AATGTTAACGAGTGCCCCCG+GGG - chr2_2:61136585-61136604 None:intergenic 55.0%
TTGACAGGTACCACCGCAAC+AGG - chr2_2:61137194-61137213 None:intergenic 55.0%
!! GGTTGGCAGTTGATAGGTGG+GGG + chr2_2:61137665-61137684 Msa0262310:CDS 55.0%
! TGATAGGTGGGGGCGTATAG+AGG + chr2_2:61137675-61137694 Msa0262310:CDS 55.0%
AAGACGGTTCCTAACCGCGG+TGG + chr2_2:61134835-61134854 Msa0262310:CDS 60.0%
TCCTAACCGCGGTGGTCGAT+CGG + chr2_2:61134843-61134862 Msa0262310:CDS 60.0%
CTTGTTAACGAGTGCCCCCG+GGG + chr2_2:61135812-61135831 Msa0262310:intron 60.0%
CTTGTTAACGAGTGCCCCCG+GGG + chr2_2:61135812-61135831 Msa0262310:intron 60.0%
GCAGTGGACCTCATGAACCC+TGG + chr2_2:61137589-61137608 Msa0262310:intron 60.0%
TAACCGCGGTGGTCGATCGG+CGG + chr2_2:61134846-61134865 Msa0262310:CDS 65.0%
GCCGATCGACCACCGCGGTT+AGG - chr2_2:61134847-61134866 None:intergenic 70.0%
TCACCGCCGATCGACCACCG+CGG - chr2_2:61134852-61134871 None:intergenic 70.0%
GGGGGGAAACTTAGGGGGGC+TGG - chr2_2:61135566-61135585 None:intergenic 70.0%
GGGGGGAAACTTAGGGGGGC+TGG - chr2_2:61135566-61135585 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 61134660 61138056 61134660 ID=Msa0262310;Name=Msa0262310
chr2_2 mRNA 61134660 61138056 61134660 ID=Msa0262310-mRNA-1;Parent=Msa0262310;Name=Msa0262310-mRNA-1;_AED=0.37;_eAED=0.37;_QI=64|1|1|1|1|1|2|273|140
chr2_2 exon 61134660 61134955 61134660 ID=Msa0262310-mRNA-1:exon:18841;Parent=Msa0262310-mRNA-1
chr2_2 exon 61137593 61138056 61137593 ID=Msa0262310-mRNA-1:exon:18842;Parent=Msa0262310-mRNA-1
chr2_2 five_prime_UTR 61134660 61134723 61134660 ID=Msa0262310-mRNA-1:five_prime_utr;Parent=Msa0262310-mRNA-1
chr2_2 CDS 61134724 61134955 61134724 ID=Msa0262310-mRNA-1:cds;Parent=Msa0262310-mRNA-1
chr2_2 CDS 61137593 61137783 61137593 ID=Msa0262310-mRNA-1:cds;Parent=Msa0262310-mRNA-1
chr2_2 three_prime_UTR 61137784 61138056 61137784 ID=Msa0262310-mRNA-1:three_prime_utr;Parent=Msa0262310-mRNA-1
Gene Sequence

>Msa0262310

ATGGCGACACAAACTGCAAAGCGAAAACCAGTGTTCGTGAAGGTCGATCAGCTGAAACCTGGAACCAATGGACACACTCTGACAGTGAAGGTGGTTAATTCTTCGCCGGTGAAGACGGTTCCTAACCGCGGTGGTCGATCGGCGGTGATTGCTTCTCGTCCTTCCCGCATTGCTGAATGTCTCATTGGTGATGAAACTGCTAGCATAATCTTCACTGCTCGCAATGAACAAGTGGACCTCATGAACCCTGGTGCAACTTTAATTCTGCGTAATGCTAAGATTGACATGTTCAAGGGATCTATGAGGTTGGCAGTTGATAGGTGGGGGCGTATAGAGGTCACAGAACCTGCAAATTTTGAAGTTAGGGAAGATAACAATCTCTCATTAGTTGAATATGAATTGGTCAATGTCGTTGAAGAGTAA

Protein sequence

>Msa0262310

MATQTAKRKPVFVKVDQLKPGTNGHTLTVKVVNSSPVKTVPNRGGRSAVIASRPSRIAECLIGDETASIIFTARNEQVDLMNPGATLILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVREDNNLSLVEYELVNVVEE*