AlfalfaGEDB | Msa0813720

M. sativa cultivar zhongmu-4 / Msa0813720

KEGG: K21374
GO: -
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813720	XP_004490689.1	71.744	453	79	3	1	404	1	453	0.0	645

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813720	sp\|O64733\|U87A2_ARATH	45.898	451	191	7	2	403	5	451	1.93e-135	399

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813720	A0A067XTI9	71.744	453	79	3	1	404	1	453	0.0	645

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa0813720	0.813693	2.249149e-51	-8.615850e-47
Msa0003640	Msa0813720	0.810798	9.637888e-51	-8.615850e-47
Msa0004980	Msa0813720	0.838650	2.535207e-57	-8.615850e-47
Msa0011960	Msa0813720	0.803275	3.767319e-49	-8.615850e-47
Msa0012240	Msa0813720	0.828213	1.018439e-54	-8.615850e-47
Msa0013050	Msa0813720	-0.868074	8.554959e-66	-8.615850e-47
Msa0013290	Msa0813720	0.806397	8.392253e-50	-8.615850e-47
Msa0016670	Msa0813720	0.817024	4.085974e-52	-8.615850e-47
Msa0020630	Msa0813720	0.806994	6.276279e-50	-8.615850e-47
Msa0023000	Msa0813720	0.817218	3.695021e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813720	MtrunA17_Chr5g0431431	71.031	359	86	3	1	357	1	343	1.03e-175	494
Msa0813720	MtrunA17_Chr5g0431441	51.535	456	163	6	10	409	18	471	8.50e-167	476
Msa0813720	MtrunA17_Chr3g0106231	53.097	452	169	8	2	412	9	458	1.49e-155	447
Msa0813720	MtrunA17_Chr5g0431421	48.869	442	179	8	10	405	10	450	1.03e-140	409
Msa0813720	MtrunA17_Chr5g0431361	48.416	442	180	7	10	403	12	453	1.32e-140	409
Msa0813720	MtrunA17_Chr5g0431401	48.636	440	179	7	10	403	10	448	1.28e-139	406
Msa0813720	MtrunA17_Chr5g0432731	74.219	256	62	2	153	404	42	297	2.00e-139	400
Msa0813720	MtrunA17_Chr5g0431371	47.608	439	185	6	10	403	10	448	3.74e-138	402
Msa0813720	MtrunA17_Chr3g0106251	57.915	259	106	2	155	412	44	300	2.12e-102	306
Msa0813720	MtrunA17_Chr5g0432741	69.512	164	41	1	1	155	1	164	7.96e-74	228

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0813720	AT2G30150.2	45.312	448	193	6	5	403	8	452	1.66e-137	401
Msa0813720	AT2G30140.2	46.000	450	191	7	2	403	5	450	1.35e-136	399
Msa0813720	AT2G30140.1	45.898	451	191	7	2	403	5	451	1.96e-136	399
Msa0813720	AT2G30150.1	45.558	439	187	6	14	403	1	436	4.94e-135	394
Msa0813720	AT2G31750.2	29.274	468	250	12	10	410	8	461	1.98e-54	188
Msa0813720	AT2G31750.1	29.437	462	245	12	10	404	8	455	2.81e-54	187
Msa0813720	AT1G05675.1	29.501	461	240	13	9	400	5	449	1.58e-52	182
Msa0813720	AT1G24100.1	30.444	473	235	16	2	400	3	455	3.35e-51	179
Msa0813720	AT1G05560.1	27.646	463	260	11	3	403	2	451	1.76e-50	177
Msa0813720	AT1G05560.2	27.646	463	260	11	3	403	52	501	3.27e-50	177

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Find 94 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATTTGTGGGCACAT+GGG	0.625283	5_3:+44744079	Msa0813720:CDS
AAAGATGGAAGAACCCTTTA+AGG	0.293468	5_3:+44741808	Msa0813720:CDS
AAAGGAAGGTGTTATTTCTG+GGG	0.633247	5_3:+44744189	Msa0813720:CDS
AAAGTTGGTGTGTGAATTTA+TGG	0.216402	5_3:+44744345	Msa0813720:CDS
AACAAGGATGTTATTGTTCT+TGG	0.234090	5_3:-44741666	None:intergenic
AAGATATGTGGTGATGCAAT+TGG	0.512128	5_3:+44744421	Msa0813720:CDS
AAGCTGATGTTGTCGGGTTT+TGG	0.282585	5_3:-44741734	None:intergenic
AATGATTTGAATGCCTTCAT+TGG	0.402190	5_3:+44744463	Msa0813720:CDS
AATGGTTGGTCCAAATTTAT+TGG	0.182855	5_3:-44744229	None:intergenic
AATGTGACAACACTCTCAAT+TGG	0.474430	5_3:-44744123	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGGATGTTATTGTTCT+TGG	-	chr5_3:44741669-44741688	None:intergenic	30.0%
ATAAACCTAAAATCTCAGCA+TGG	-	chr5_3:44742388-44742407	None:intergenic	30.0%
TATACTCTTAGTAGATGTCA+TGG	+	chr5_3:44742688-44742707	Msa0813720:intron	30.0%
ATACTCTTAGTAGATGTCAT+GGG	+	chr5_3:44742689-44742708	Msa0813720:intron	30.0%
TGTACTTGGAAATATCAAAG+GGG	-	chr5_3:44743014-44743033	None:intergenic	30.0%
GCAAAAGACTCCTATATTTA+GGG	+	chr5_3:44743210-44743229	Msa0813720:intron	30.0%
CCAATAGTGTAAATTGGTAA+GGG	-	chr5_3:44743836-44743855	None:intergenic	30.0%
ACCAATAGTGTAAATTGGTA+AGG	-	chr5_3:44743837-44743856	None:intergenic	30.0%
ATGTAAAGAACAGAACCAAT+GGG	-	chr5_3:44743944-44743963	None:intergenic	30.0%
TATGTAAAGAACAGAACCAA+TGG	-	chr5_3:44743945-44743964	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	44741566	44744525	44741566	ID=Msa0813720;Name=Msa0813720
chr5_3	mRNA	44741566	44744525	44741566	ID=Msa0813720-mRNA-1;Parent=Msa0813720;Name=Msa0813720-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|0\|0\|1\|1\|1\|2\|0\|413
chr5_3	exon	44741566	44742022	44741566	ID=Msa0813720-mRNA-1:exon:13780;Parent=Msa0813720-mRNA-1
chr5_3	exon	44743741	44744525	44743741	ID=Msa0813720-mRNA-1:exon:13781;Parent=Msa0813720-mRNA-1
chr5_3	CDS	44741566	44742022	44741566	ID=Msa0813720-mRNA-1:cds;Parent=Msa0813720-mRNA-1
chr5_3	CDS	44743741	44744525	44743741	ID=Msa0813720-mRNA-1:cds;Parent=Msa0813720-mRNA-1

Gene Sequence

>Msa0813720

ATGGAATCACCACCAACTTCCTTCAACCACACACTAGCCATGCCTTACCCTGCAAGAGACCACATCAACCCCATGATGAACCTATGCAAGCTCCTTGTCTCCAAGAACAATAACATCCTTGTTACATTTGTTGTCAGTGAGGAATGGTTAAGCTTCATCTCCTCCGAACCAAAACCCGACAACATCAGCTTCCGTTCGATCCCCAACGTCGTTCCTTCAGAACTCATTGCGATCGCGATGACAAAGATGGAAGAACCCTTTAAGGAGCTACTTAACCTACTTGACAATCCTCCTTCAATCATTATATATGATACTATGTTGTATTGGGCTGTTGTCGTTGGAAATCGAAGGAATATTCCGGTAGCGTCGTTTTGGACAATGTCTGCTTCGTTTTTCTCTGTTCTCTTACACCACCATCTTTTGGAACAAAATGGTCACTACCCTGTGCGAAATTCAGGATTTCAATGGATTCACAAAGCACAATATCTTCTATTCACTTCAATTTATGAGCTTGAATCTCAAGTCCTTGATACCTTAAAATCGAAACTGCCCTTACCAATTTACACTATTGGTCCTACAATACCCTACTTTATTAATCTTAAAAACAATCCTAAACCAAACACAACAAATAGCTACATTGAGTGGCTTGATTCACAACCCATTGGTTCTGTTCTTTACATAGCACAAGGTAGTTTTCTCTCAGCTTCAAATGAACAAATTAATGAGATTGCAAATGCTGTGCGTGAAAGCAATGTTAGATTTTTATGGGTAGCTCGTGGAGAAGCTACAAGGTTGAAAGAAATTTGTGGGCACATGGGATTGGTTTTAGAATGGTGTGACCAATTGAGAGTGTTGTCACATTCTTCTGTTGGTGGATTTTGGTCACATTGTGGTTGGAATTCTACAAAGGAAGGTGTTATTTCTGGGGTACCTTTTTTAACTTTTCCAATAAATTTGGACCAACCATTTAATAGTAAGATGATAGTTGAGGATTTGAAGATTGGGTTGAGAGTGAAGGAAGATGTTAAGGGAGATATTTTGGTGAAGAAATTTGAAATTGTAAAGTTGGTGTGTGAATTTATGGATTTTGATAGTGACCTTACAAGGGATATTAGGGAAAAAAGTAGAAAGTTCAAAAAGATATGTGGTGATGCAATTGGCAATGGTGGGTCTGCTGATAATGATTTGAATGCCTTCATTGGTGACATAGTAACGCATTGTTCACAGTACACACATGCTTGA

Protein sequence

>Msa0813720

MESPPTSFNHTLAMPYPARDHINPMMNLCKLLVSKNNNILVTFVVSEEWLSFISSEPKPDNISFRSIPNVVPSELIAIAMTKMEEPFKELLNLLDNPPSIIIYDTMLYWAVVVGNRRNIPVASFWTMSASFFSVLLHHHLLEQNGHYPVRNSGFQWIHKAQYLLFTSIYELESQVLDTLKSKLPLPIYTIGPTIPYFINLKNNPKPNTTNSYIEWLDSQPIGSVLYIAQGSFLSASNEQINEIANAVRESNVRFLWVARGEATRLKEICGHMGLVLEWCDQLRVLSHSSVGGFWSHCGWNSTKEGVISGVPFLTFPINLDQPFNSKMIVEDLKIGLRVKEDVKGDILVKKFEIVKLVCEFMDFDSDLTRDIREKSRKFKKICGDAIGNGGSADNDLNAFIGDIVTHCSQYTHA*