AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173830 MtrunA17_Chr1g0193951 98.601 143 2 0 35 177 1 143 6.53e-104 294
Msa0173830 MtrunA17_Chr6g0476661 38.961 77 47 0 76 152 3 79 2.82e-15 67.8
Msa0173830 MtrunA17_Chr1g0188281 31.250 80 55 0 73 152 34 113 1.41e-11 58.9
Msa0173830 MtrunA17_Chr6g0476721 31.183 93 64 0 79 171 36 128 2.32e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173830 AT2G32650.2 66.434 143 43 2 35 176 1 139 3.27e-64 194
Msa0173830 AT2G32650.1 66.434 143 43 2 35 176 1 139 3.27e-64 194
Msa0173830 AT2G32180.1 66.434 143 43 2 35 176 1 139 4.34e-64 194
Msa0173830 AT2G32180.2 66.434 143 43 2 35 176 1 139 4.34e-64 194
Msa0173830 AT4G10290.1 35.065 77 47 1 79 152 16 92 2.73e-11 58.5

Find 47 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAACGATAAACCCTTTC+TGG 0.136408 1_4:+59179552 None:intergenic
GCGAATGAGGTGAGAGATTT+TGG 0.184909 1_4:+59179513 None:intergenic
CGTTTCATGCAATTTGTTGC+CGG 0.346254 1_4:-59177406 Msa0173830:CDS
GAGGCTGATCTTTGGTTCAA+TGG 0.368609 1_4:-59177355 Msa0173830:CDS
ATGTTTCAAGATGGTCAGTA+TGG 0.381328 1_4:-59177525 Msa0173830:CDS
AGTGGTTTGAGGCTGATCTT+TGG 0.382114 1_4:-59177363 Msa0173830:CDS
CGTTATAGTTTCCGAGCATA+TGG 0.389309 1_4:-59177319 Msa0173830:CDS
ATGAAACGCTTGCTCCCTTC+AGG 0.397604 1_4:+59177421 None:intergenic
CTCCTTGAACCATTGTTGAT+AGG 0.416620 1_4:+59177679 None:intergenic
CAGATTTGTAGTTGCGAATG+AGG 0.449464 1_4:+59179500 None:intergenic
CAATGTGAAGGTAGCAAGAA+AGG 0.452172 1_4:-59177575 Msa0173830:CDS
TTAAACGATAAACCCTTTCT+GGG 0.457873 1_4:+59179553 None:intergenic
CTGCCAATCCCATGGCAACC+TGG 0.474702 1_4:+59177489 None:intergenic
ACCATTGTTGATAGGAGAAT+AGG 0.477458 1_4:+59177687 None:intergenic
TTGTTGCCGGAGATTTAATC+CGG 0.479684 1_4:-59177393 Msa0173830:CDS
CCTCAAACCACTTCGGATAC+CGG 0.486692 1_4:+59177374 None:intergenic
AATCCAGGTTGCCATGGGAT+TGG 0.488234 1_4:-59177492 Msa0173830:CDS
CTCCTATCAACAATGGTTCA+AGG 0.489683 1_4:-59177681 Msa0173830:CDS
CGGATACCGGATTAAATCTC+CGG 0.495277 1_4:+59177387 None:intergenic
ACTACAAATCTGCTTTCAAA+AGG 0.496221 1_4:-59179489 Msa0173830:intron
CAGGTTGCCATGGGATTGGC+AGG 0.499106 1_4:-59177488 Msa0173830:CDS
GGATTGGCAGGTAGACCAAC+TGG 0.504664 1_4:-59177476 Msa0173830:CDS
CCGGAAAATCCAGGTTGCCA+TGG 0.518583 1_4:-59177498 Msa0173830:CDS
CACATTGTATAATTCTTCCA+AGG 0.523416 1_4:+59177591 None:intergenic
AAACTATAACGTTCTTGATA+CGG 0.530071 1_4:+59177331 None:intergenic
CGGAAAATCCAGGTTGCCAT+GGG 0.538481 1_4:-59177497 Msa0173830:CDS
TATGGAAGACCGGAAAATCC+AGG 0.546447 1_4:-59177507 Msa0173830:CDS
ATAAAGCTGAATACCCAGAA+AGG 0.549047 1_4:-59179566 Msa0173830:CDS
AATGAAGATAGAGAAATCCT+TGG 0.554986 1_4:-59177608 Msa0173830:CDS
AGATGGTCAGTATGGAAGAC+CGG 0.563715 1_4:-59177517 Msa0173830:CDS
TAAAGCTGAATACCCAGAAA+GGG 0.563739 1_4:-59179565 Msa0173830:CDS
CTCAGCTTGATGTTTCAAGA+TGG 0.565626 1_4:-59177534 Msa0173830:CDS
CCGGTATCCGAAGTGGTTTG+AGG 0.566818 1_4:-59177374 Msa0173830:CDS
AATAATCATCACCATATGCT+CGG 0.568249 1_4:+59177308 None:intergenic
TCAAGTAACTCTTCTATGCG+AGG 0.580396 1_4:-59177646 Msa0173830:CDS
ATCGTTTAACAGTAGCAGCA+AGG 0.580476 1_4:-59179539 Msa0173830:CDS
CAAGTAACTCTTCTATGCGA+GGG 0.589742 1_4:-59177645 Msa0173830:CDS
CTTCTTCTATGTACACCAGT+TGG 0.594279 1_4:+59177461 None:intergenic
ACCTATTCTCCTATCAACAA+TGG 0.597081 1_4:-59177688 Msa0173830:CDS
CAACTGGTGTACATAGAAGA+AGG 0.600561 1_4:-59177460 Msa0173830:CDS
AAGTGAGAGTTGTTCCTGAA+GGG 0.600643 1_4:-59177435 Msa0173830:CDS
GAAGTGAGAGTTGTTCCTGA+AGG 0.600726 1_4:-59177436 Msa0173830:CDS
TGGTCTACCTGCCAATCCCA+TGG 0.603266 1_4:+59177481 None:intergenic
GGAAGAATTATACAATGTGA+AGG 0.609686 1_4:-59177587 Msa0173830:CDS
ATTTAATCCGGTATCCGAAG+TGG 0.624736 1_4:-59177381 Msa0173830:CDS
AGATCAGCCTCAAACCACTT+CGG 0.631094 1_4:+59177367 None:intergenic
GTTGATAGGAGAATAGGTGA+AGG 0.653020 1_4:+59177693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAGCTTATACATAA+GGG + chr1_4:59177598-59177617 None:intergenic 15.0%
!! ATAAAAATAGCTTATACATA+AGG + chr1_4:59177599-59177618 None:intergenic 15.0%
!! TTAAAATTATGCATATAACA+GGG + chr1_4:59178036-59178055 None:intergenic 15.0%
!! TTTGTCTAATCTTTATTAAA+TGG + chr1_4:59178896-59178915 None:intergenic 15.0%
!! TAAAAATAGCTTATACATAA+GGG + chr1_4:59177598-59177617 None:intergenic 15.0%
!! ATAAAAATAGCTTATACATA+AGG + chr1_4:59177599-59177618 None:intergenic 15.0%
!! TTAAAATTATGCATATAACA+GGG + chr1_4:59178036-59178055 None:intergenic 15.0%
!! TTTGTCTAATCTTTATTAAA+TGG + chr1_4:59178896-59178915 None:intergenic 15.0%
!! CTTAAAATTATGCATATAAC+AGG + chr1_4:59178037-59178056 None:intergenic 20.0%
!!! CTGTTATATGCATAATTTTA+AGG - chr1_4:59178035-59178054 Msa0173830:intron 20.0%
!!! ATCGATATTCTTTGATTTAA+AGG + chr1_4:59178105-59178124 None:intergenic 20.0%
!!! ATGACTTTTATTGGTTTTAA+TGG + chr1_4:59178163-59178182 None:intergenic 20.0%
!! TATTCAGATAAATTAAGAGT+AGG + chr1_4:59178416-59178435 None:intergenic 20.0%
!! TTTGAGTATAAAAAGTTAAC+AGG - chr1_4:59179137-59179156 Msa0173830:intron 20.0%
!! CTTAAAATTATGCATATAAC+AGG + chr1_4:59178037-59178056 None:intergenic 20.0%
!!! CTGTTATATGCATAATTTTA+AGG - chr1_4:59178035-59178054 Msa0173830:intron 20.0%
!!! ATCGATATTCTTTGATTTAA+AGG + chr1_4:59178105-59178124 None:intergenic 20.0%
!!! ATGACTTTTATTGGTTTTAA+TGG + chr1_4:59178163-59178182 None:intergenic 20.0%
!! TATTCAGATAAATTAAGAGT+AGG + chr1_4:59178416-59178435 None:intergenic 20.0%
!! TTTGAGTATAAAAAGTTAAC+AGG - chr1_4:59179137-59179156 Msa0173830:intron 20.0%
!!! TTTTTTCTGTTCTTCGTAAT+TGG - chr1_4:59177433-59177452 Msa0173830:CDS 25.0%
!! TTTTTCTGTTCTTCGTAATT+GGG - chr1_4:59177434-59177453 Msa0173830:CDS 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG + chr1_4:59177755-59177774 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGACTATT+TGG + chr1_4:59177756-59177775 None:intergenic 25.0%
!!! ATATGCATAATTTTAAGGCT+CGG - chr1_4:59178040-59178059 Msa0173830:intron 25.0%
! TTTACTAGAGAGATATTTGA+TGG + chr1_4:59178137-59178156 None:intergenic 25.0%
! CCAATAAAAGTCATACATAT+CGG - chr1_4:59178169-59178188 Msa0173830:intron 25.0%
!!! ACATAGAACCTTTAAAATTG+TGG - chr1_4:59178222-59178241 Msa0173830:intron 25.0%
!! ATTTTCCACCACAATTTTAA+AGG + chr1_4:59178233-59178252 None:intergenic 25.0%
! AACACCTTAAGTAAGAAAAT+TGG - chr1_4:59178524-59178543 Msa0173830:intron 25.0%
! ACACCTTAAGTAAGAAAATT+GGG - chr1_4:59178525-59178544 Msa0173830:intron 25.0%
!! AAACCCAATTTTCTTACTTA+AGG + chr1_4:59178531-59178550 None:intergenic 25.0%
! TTAAGTAAGAAAATTGGGTT+TGG - chr1_4:59178530-59178549 Msa0173830:intron 25.0%
! TTTGTTGAAATCAAAATGTG+AGG - chr1_4:59178646-59178665 Msa0173830:intron 25.0%
!! TTGGTAAATTGTTTCCTTTT+TGG - chr1_4:59178734-59178753 Msa0173830:intron 25.0%
!! TGGTAAATTGTTTCCTTTTT+GGG - chr1_4:59178735-59178754 Msa0173830:intron 25.0%
! CTATAGAATCAACAAAAGAT+TGG - chr1_4:59178833-59178852 Msa0173830:intron 25.0%
!!! AAAGATTGGAAGTTGTTTTT+AGG - chr1_4:59178847-59178866 Msa0173830:intron 25.0%
!!! AAATCAGCTTTAAATCAACT+CGG + chr1_4:59178926-59178945 None:intergenic 25.0%
! AAACTATAACGTTCTTGATA+CGG + chr1_4:59179548-59179567 None:intergenic 25.0%
!!! TTTTTTCTGTTCTTCGTAAT+TGG - chr1_4:59177433-59177452 Msa0173830:CDS 25.0%
!! TTTTTCTGTTCTTCGTAATT+GGG - chr1_4:59177434-59177453 Msa0173830:CDS 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG + chr1_4:59177755-59177774 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGACTATT+TGG + chr1_4:59177756-59177775 None:intergenic 25.0%
!!! ATATGCATAATTTTAAGGCT+CGG - chr1_4:59178040-59178059 Msa0173830:intron 25.0%
! TTTACTAGAGAGATATTTGA+TGG + chr1_4:59178137-59178156 None:intergenic 25.0%
! CCAATAAAAGTCATACATAT+CGG - chr1_4:59178169-59178188 Msa0173830:intron 25.0%
!!! ACATAGAACCTTTAAAATTG+TGG - chr1_4:59178222-59178241 Msa0173830:intron 25.0%
!! ATTTTCCACCACAATTTTAA+AGG + chr1_4:59178233-59178252 None:intergenic 25.0%
! AACACCTTAAGTAAGAAAAT+TGG - chr1_4:59178524-59178543 Msa0173830:intron 25.0%
! ACACCTTAAGTAAGAAAATT+GGG - chr1_4:59178525-59178544 Msa0173830:intron 25.0%
!! AAACCCAATTTTCTTACTTA+AGG + chr1_4:59178531-59178550 None:intergenic 25.0%
! TTAAGTAAGAAAATTGGGTT+TGG - chr1_4:59178530-59178549 Msa0173830:intron 25.0%
! TTTGTTGAAATCAAAATGTG+AGG - chr1_4:59178646-59178665 Msa0173830:intron 25.0%
!! TTGGTAAATTGTTTCCTTTT+TGG - chr1_4:59178734-59178753 Msa0173830:intron 25.0%
!! TGGTAAATTGTTTCCTTTTT+GGG - chr1_4:59178735-59178754 Msa0173830:intron 25.0%
! CTATAGAATCAACAAAAGAT+TGG - chr1_4:59178833-59178852 Msa0173830:intron 25.0%
!!! AAAGATTGGAAGTTGTTTTT+AGG - chr1_4:59178847-59178866 Msa0173830:intron 25.0%
!!! AAATCAGCTTTAAATCAACT+CGG + chr1_4:59178926-59178945 None:intergenic 25.0%
! AAACTATAACGTTCTTGATA+CGG + chr1_4:59179548-59179567 None:intergenic 25.0%
TTAAACGATAAACCCTTTCT+GGG + chr1_4:59177326-59177345 None:intergenic 30.0%
ACTACAAATCTGCTTTCAAA+AGG - chr1_4:59177387-59177406 Msa0173830:CDS 30.0%
! CATTTGAGTTCTTTAAGTCT+GGG - chr1_4:59177474-59177493 Msa0173830:CDS 30.0%
!!! GCTGTTTTTTCAAGCTATTT+TGG - chr1_4:59177664-59177683 Msa0173830:CDS 30.0%
! AATTTTCTGTTCTGTGTGTA+TGG - chr1_4:59177822-59177841 Msa0173830:intron 30.0%
CAGAAACAAATTACATCTAG+CGG + chr1_4:59177909-59177928 None:intergenic 30.0%
!! GCTAGATGTAATTTGTTTCT+GGG - chr1_4:59177908-59177927 Msa0173830:intron 30.0%
TTGATACTTCGTAGATTTGA+GGG + chr1_4:59178076-59178095 None:intergenic 30.0%
TTTGATACTTCGTAGATTTG+AGG + chr1_4:59178077-59178096 None:intergenic 30.0%
! CCGATATGTATGACTTTTAT+TGG + chr1_4:59178172-59178191 None:intergenic 30.0%
!! TAGAACCTTTAAAATTGTGG+TGG - chr1_4:59178225-59178244 Msa0173830:intron 30.0%
!! ATCGCTATTTTGCAATTTTG+AGG - chr1_4:59178314-59178333 Msa0173830:intron 30.0%
TTTAGTCCTTGAAATGGTAA+GGG + chr1_4:59178354-59178373 None:intergenic 30.0%
! TTTTAGTCCTTGAAATGGTA+AGG + chr1_4:59178355-59178374 None:intergenic 30.0%
!!! AGGTATTTTAGTCCTTGAAA+TGG + chr1_4:59178360-59178379 None:intergenic 30.0%
TAGTCCTTGAAATAAAGAGT+AGG + chr1_4:59178384-59178403 None:intergenic 30.0%
CAGATAAATTAAGAGTAGGT+AGG + chr1_4:59178412-59178431 None:intergenic 30.0%
TGAAAACAAAAACACTCAGT+AGG + chr1_4:59178620-59178639 None:intergenic 30.0%
GGTGTTTGATCTTTATCTAA+TGG - chr1_4:59178667-59178686 Msa0173830:intron 30.0%
AGACTATATAGTGAGTGTAT+TGG - chr1_4:59178715-59178734 Msa0173830:intron 30.0%
TGTGTCTATTTCCATCTAAA+TGG + chr1_4:59178761-59178780 None:intergenic 30.0%
ACATGAAATTTCGCAATCAA+GGG + chr1_4:59178977-59178996 None:intergenic 30.0%
AACATGAAATTTCGCAATCA+AGG + chr1_4:59178978-59178997 None:intergenic 30.0%
TCTCAAAAGGTTATGCTTAT+GGG - chr1_4:59179024-59179043 Msa0173830:intron 30.0%
! TGGTTTTCTTATGATGTCTT+TGG - chr1_4:59179067-59179086 Msa0173830:intron 30.0%
GTATAAAAAGTTAACAGGCA+TGG - chr1_4:59179142-59179161 Msa0173830:intron 30.0%
AATGAAGATAGAGAAATCCT+TGG - chr1_4:59179268-59179287 Msa0173830:intron 30.0%
CACATTGTATAATTCTTCCA+AGG + chr1_4:59179288-59179307 None:intergenic 30.0%
GGAAGAATTATACAATGTGA+AGG - chr1_4:59179289-59179308 Msa0173830:intron 30.0%
TTAAACGATAAACCCTTTCT+GGG + chr1_4:59177326-59177345 None:intergenic 30.0%
ACTACAAATCTGCTTTCAAA+AGG - chr1_4:59177387-59177406 Msa0173830:CDS 30.0%
! CATTTGAGTTCTTTAAGTCT+GGG - chr1_4:59177474-59177493 Msa0173830:CDS 30.0%
!!! GCTGTTTTTTCAAGCTATTT+TGG - chr1_4:59177664-59177683 Msa0173830:CDS 30.0%
! AATTTTCTGTTCTGTGTGTA+TGG - chr1_4:59177822-59177841 Msa0173830:intron 30.0%
CAGAAACAAATTACATCTAG+CGG + chr1_4:59177909-59177928 None:intergenic 30.0%
!! GCTAGATGTAATTTGTTTCT+GGG - chr1_4:59177908-59177927 Msa0173830:intron 30.0%
TTGATACTTCGTAGATTTGA+GGG + chr1_4:59178076-59178095 None:intergenic 30.0%
TTTGATACTTCGTAGATTTG+AGG + chr1_4:59178077-59178096 None:intergenic 30.0%
! CCGATATGTATGACTTTTAT+TGG + chr1_4:59178172-59178191 None:intergenic 30.0%
!! TAGAACCTTTAAAATTGTGG+TGG - chr1_4:59178225-59178244 Msa0173830:intron 30.0%
!! ATCGCTATTTTGCAATTTTG+AGG - chr1_4:59178314-59178333 Msa0173830:intron 30.0%
TTTAGTCCTTGAAATGGTAA+GGG + chr1_4:59178354-59178373 None:intergenic 30.0%
! TTTTAGTCCTTGAAATGGTA+AGG + chr1_4:59178355-59178374 None:intergenic 30.0%
!!! AGGTATTTTAGTCCTTGAAA+TGG + chr1_4:59178360-59178379 None:intergenic 30.0%
TAGTCCTTGAAATAAAGAGT+AGG + chr1_4:59178384-59178403 None:intergenic 30.0%
CAGATAAATTAAGAGTAGGT+AGG + chr1_4:59178412-59178431 None:intergenic 30.0%
TGAAAACAAAAACACTCAGT+AGG + chr1_4:59178620-59178639 None:intergenic 30.0%
GGTGTTTGATCTTTATCTAA+TGG - chr1_4:59178667-59178686 Msa0173830:intron 30.0%
AGACTATATAGTGAGTGTAT+TGG - chr1_4:59178715-59178734 Msa0173830:intron 30.0%
TGTGTCTATTTCCATCTAAA+TGG + chr1_4:59178761-59178780 None:intergenic 30.0%
ACATGAAATTTCGCAATCAA+GGG + chr1_4:59178977-59178996 None:intergenic 30.0%
AACATGAAATTTCGCAATCA+AGG + chr1_4:59178978-59178997 None:intergenic 30.0%
TCTCAAAAGGTTATGCTTAT+GGG - chr1_4:59179024-59179043 Msa0173830:intron 30.0%
! TGGTTTTCTTATGATGTCTT+TGG - chr1_4:59179067-59179086 Msa0173830:intron 30.0%
GTATAAAAAGTTAACAGGCA+TGG - chr1_4:59179142-59179161 Msa0173830:intron 30.0%
AATGAAGATAGAGAAATCCT+TGG - chr1_4:59179268-59179287 Msa0173830:intron 30.0%
CACATTGTATAATTCTTCCA+AGG + chr1_4:59179288-59179307 None:intergenic 30.0%
GGAAGAATTATACAATGTGA+AGG - chr1_4:59179289-59179308 Msa0173830:intron 30.0%
ATAAAGCTGAATACCCAGAA+AGG - chr1_4:59177310-59177329 Msa0173830:CDS 35.0%
TAAAGCTGAATACCCAGAAA+GGG - chr1_4:59177311-59177330 Msa0173830:CDS 35.0%
GTTAAACGATAAACCCTTTC+TGG + chr1_4:59177327-59177346 None:intergenic 35.0%
! GCATTTGAGTTCTTTAAGTC+TGG - chr1_4:59177473-59177492 Msa0173830:CDS 35.0%
TCTCACAAAACTTATGCTAC+TGG - chr1_4:59177761-59177780 Msa0173830:intron 35.0%
! AGCGTTTAGAACAACTTGAT+TGG - chr1_4:59177798-59177817 Msa0173830:intron 35.0%
TGTTCTGTGTGTATGGATAT+GGG - chr1_4:59177829-59177848 Msa0173830:intron 35.0%
AACAAATTACATCTAGCGGA+GGG + chr1_4:59177905-59177924 None:intergenic 35.0%
AAACAAATTACATCTAGCGG+AGG + chr1_4:59177906-59177925 None:intergenic 35.0%
!! CGCTAGATGTAATTTGTTTC+TGG - chr1_4:59177907-59177926 Msa0173830:intron 35.0%
GAAGACTAAGCTCTTTCAAT+AGG - chr1_4:59178005-59178024 Msa0173830:intron 35.0%
ACTAGAGAGATATTTGATGG+AGG + chr1_4:59178134-59178153 None:intergenic 35.0%
CCTTGAAATAAAGAGTAGGT+AGG + chr1_4:59178380-59178399 None:intergenic 35.0%
! CCTACCTACTCTTTATTTCA+AGG - chr1_4:59178377-59178396 Msa0173830:intron 35.0%
AGTCAGCAAATTGAAACCAT+TGG - chr1_4:59178587-59178606 Msa0173830:intron 35.0%
GACACAACAAAACCTATATC+AGG - chr1_4:59178775-59178794 Msa0173830:intron 35.0%
CAACAAAACCTATATCAGGA+AGG - chr1_4:59178779-59178798 Msa0173830:intron 35.0%
AAAACCTATATCAGGAAGGA+AGG - chr1_4:59178783-59178802 Msa0173830:intron 35.0%
TGGTCTATACTTGCAATTGT+GGG + chr1_4:59178876-59178895 None:intergenic 35.0%
ATGGTCTATACTTGCAATTG+TGG + chr1_4:59178877-59178896 None:intergenic 35.0%
CTCTCAAAAGGTTATGCTTA+TGG - chr1_4:59179023-59179042 Msa0173830:intron 35.0%
AATTGAGGAGGAAAATGTGT+TGG - chr1_4:59179047-59179066 Msa0173830:intron 35.0%
ACCTATTCTCCTATCAACAA+TGG - chr1_4:59179188-59179207 Msa0173830:intron 35.0%
! ACCATTGTTGATAGGAGAAT+AGG + chr1_4:59179192-59179211 None:intergenic 35.0%
ATGTTTCAAGATGGTCAGTA+TGG - chr1_4:59179351-59179370 Msa0173830:intron 35.0%
ATAAAGCTGAATACCCAGAA+AGG - chr1_4:59177310-59177329 Msa0173830:CDS 35.0%
TAAAGCTGAATACCCAGAAA+GGG - chr1_4:59177311-59177330 Msa0173830:CDS 35.0%
GTTAAACGATAAACCCTTTC+TGG + chr1_4:59177327-59177346 None:intergenic 35.0%
! GCATTTGAGTTCTTTAAGTC+TGG - chr1_4:59177473-59177492 Msa0173830:CDS 35.0%
TCTCACAAAACTTATGCTAC+TGG - chr1_4:59177761-59177780 Msa0173830:intron 35.0%
! AGCGTTTAGAACAACTTGAT+TGG - chr1_4:59177798-59177817 Msa0173830:intron 35.0%
TGTTCTGTGTGTATGGATAT+GGG - chr1_4:59177829-59177848 Msa0173830:intron 35.0%
AACAAATTACATCTAGCGGA+GGG + chr1_4:59177905-59177924 None:intergenic 35.0%
AAACAAATTACATCTAGCGG+AGG + chr1_4:59177906-59177925 None:intergenic 35.0%
!! CGCTAGATGTAATTTGTTTC+TGG - chr1_4:59177907-59177926 Msa0173830:intron 35.0%
GAAGACTAAGCTCTTTCAAT+AGG - chr1_4:59178005-59178024 Msa0173830:intron 35.0%
ACTAGAGAGATATTTGATGG+AGG + chr1_4:59178134-59178153 None:intergenic 35.0%
CCTTGAAATAAAGAGTAGGT+AGG + chr1_4:59178380-59178399 None:intergenic 35.0%
! CCTACCTACTCTTTATTTCA+AGG - chr1_4:59178377-59178396 Msa0173830:intron 35.0%
AGTCAGCAAATTGAAACCAT+TGG - chr1_4:59178587-59178606 Msa0173830:intron 35.0%
GACACAACAAAACCTATATC+AGG - chr1_4:59178775-59178794 Msa0173830:intron 35.0%
CAACAAAACCTATATCAGGA+AGG - chr1_4:59178779-59178798 Msa0173830:intron 35.0%
AAAACCTATATCAGGAAGGA+AGG - chr1_4:59178783-59178802 Msa0173830:intron 35.0%
TGGTCTATACTTGCAATTGT+GGG + chr1_4:59178876-59178895 None:intergenic 35.0%
ATGGTCTATACTTGCAATTG+TGG + chr1_4:59178877-59178896 None:intergenic 35.0%
CTCTCAAAAGGTTATGCTTA+TGG - chr1_4:59179023-59179042 Msa0173830:intron 35.0%
AATTGAGGAGGAAAATGTGT+TGG - chr1_4:59179047-59179066 Msa0173830:intron 35.0%
ACCTATTCTCCTATCAACAA+TGG - chr1_4:59179188-59179207 Msa0173830:intron 35.0%
! ACCATTGTTGATAGGAGAAT+AGG + chr1_4:59179192-59179211 None:intergenic 35.0%
ATGTTTCAAGATGGTCAGTA+TGG - chr1_4:59179351-59179370 Msa0173830:intron 35.0%
ATCGTTTAACAGTAGCAGCA+AGG - chr1_4:59177337-59177356 Msa0173830:CDS 40.0%
CAGATTTGTAGTTGCGAATG+AGG + chr1_4:59177379-59177398 None:intergenic 40.0%
ACTCGTTTCGTTCGTGAATT+GGG - chr1_4:59177516-59177535 Msa0173830:CDS 40.0%
CTGTTCTGTGTGTATGGATA+TGG - chr1_4:59177828-59177847 Msa0173830:intron 40.0%
GTTCTGTGTGTATGGATATG+GGG - chr1_4:59177830-59177849 Msa0173830:intron 40.0%
!! AATTTGTTTCTGGGCACTGT+CGG - chr1_4:59177917-59177936 Msa0173830:intron 40.0%
AATCTCTGATCTCTTCCAGT+CGG - chr1_4:59177954-59177973 Msa0173830:intron 40.0%
TTCTACAATGTGACGAACCA+CGG + chr1_4:59177988-59178007 None:intergenic 40.0%
ACAGACACAGACTAACACAA+GGG + chr1_4:59178484-59178503 None:intergenic 40.0%
! TGTTAGTCTGTGTCTGTGTT+TGG - chr1_4:59178487-59178506 Msa0173830:intron 40.0%
!! TCCTTTTTGGGCCATTTAGA+TGG - chr1_4:59178747-59178766 Msa0173830:intron 40.0%
TCCATCTAAATGGCCCAAAA+AGG + chr1_4:59178751-59178770 None:intergenic 40.0%
GTTTGAATCCAGCTCTCAAA+AGG - chr1_4:59179011-59179030 Msa0173830:intron 40.0%
!! AAGCATAACCTTTTGAGAGC+TGG + chr1_4:59179022-59179041 None:intergenic 40.0%
GGTTATGCTTATGGGAATTG+AGG - chr1_4:59179032-59179051 Msa0173830:intron 40.0%
TATGCTTATGGGAATTGAGG+AGG - chr1_4:59179035-59179054 Msa0173830:intron 40.0%
! GTTGATAGGAGAATAGGTGA+AGG + chr1_4:59179186-59179205 None:intergenic 40.0%
CTCCTATCAACAATGGTTCA+AGG - chr1_4:59179195-59179214 Msa0173830:intron 40.0%
CTCCTTGAACCATTGTTGAT+AGG + chr1_4:59179200-59179219 None:intergenic 40.0%
TCAAGTAACTCTTCTATGCG+AGG - chr1_4:59179230-59179249 Msa0173830:intron 40.0%
CAAGTAACTCTTCTATGCGA+GGG - chr1_4:59179231-59179250 Msa0173830:intron 40.0%
CAATGTGAAGGTAGCAAGAA+AGG - chr1_4:59179301-59179320 Msa0173830:intron 40.0%
!!! TCAAGCTGAGCTAGTTTTTC+AGG + chr1_4:59179332-59179351 None:intergenic 40.0%
CTCAGCTTGATGTTTCAAGA+TGG - chr1_4:59179342-59179361 Msa0173830:intron 40.0%
CTTCTTCTATGTACACCAGT+TGG + chr1_4:59179418-59179437 None:intergenic 40.0%
CAACTGGTGTACATAGAAGA+AGG - chr1_4:59179416-59179435 Msa0173830:intron 40.0%
AAGTGAGAGTTGTTCCTGAA+GGG - chr1_4:59179441-59179460 Msa0173830:intron 40.0%
!! CGTTTCATGCAATTTGTTGC+CGG - chr1_4:59179470-59179489 Msa0173830:intron 40.0%
TTGTTGCCGGAGATTTAATC+CGG - chr1_4:59179483-59179502 Msa0173830:intron 40.0%
ATTTAATCCGGTATCCGAAG+TGG - chr1_4:59179495-59179514 Msa0173830:CDS 40.0%
CGTTATAGTTTCCGAGCATA+TGG - chr1_4:59179557-59179576 Msa0173830:CDS 40.0%
ATCGTTTAACAGTAGCAGCA+AGG - chr1_4:59177337-59177356 Msa0173830:CDS 40.0%
CAGATTTGTAGTTGCGAATG+AGG + chr1_4:59177379-59177398 None:intergenic 40.0%
ACTCGTTTCGTTCGTGAATT+GGG - chr1_4:59177516-59177535 Msa0173830:CDS 40.0%
CTGTTCTGTGTGTATGGATA+TGG - chr1_4:59177828-59177847 Msa0173830:intron 40.0%
GTTCTGTGTGTATGGATATG+GGG - chr1_4:59177830-59177849 Msa0173830:intron 40.0%
!! AATTTGTTTCTGGGCACTGT+CGG - chr1_4:59177917-59177936 Msa0173830:intron 40.0%
AATCTCTGATCTCTTCCAGT+CGG - chr1_4:59177954-59177973 Msa0173830:intron 40.0%
TTCTACAATGTGACGAACCA+CGG + chr1_4:59177988-59178007 None:intergenic 40.0%
ACAGACACAGACTAACACAA+GGG + chr1_4:59178484-59178503 None:intergenic 40.0%
! TGTTAGTCTGTGTCTGTGTT+TGG - chr1_4:59178487-59178506 Msa0173830:intron 40.0%
!! TCCTTTTTGGGCCATTTAGA+TGG - chr1_4:59178747-59178766 Msa0173830:intron 40.0%
TCCATCTAAATGGCCCAAAA+AGG + chr1_4:59178751-59178770 None:intergenic 40.0%
GTTTGAATCCAGCTCTCAAA+AGG - chr1_4:59179011-59179030 Msa0173830:intron 40.0%
!! AAGCATAACCTTTTGAGAGC+TGG + chr1_4:59179022-59179041 None:intergenic 40.0%
GGTTATGCTTATGGGAATTG+AGG - chr1_4:59179032-59179051 Msa0173830:intron 40.0%
TATGCTTATGGGAATTGAGG+AGG - chr1_4:59179035-59179054 Msa0173830:intron 40.0%
! GTTGATAGGAGAATAGGTGA+AGG + chr1_4:59179186-59179205 None:intergenic 40.0%
CTCCTATCAACAATGGTTCA+AGG - chr1_4:59179195-59179214 Msa0173830:intron 40.0%
CTCCTTGAACCATTGTTGAT+AGG + chr1_4:59179200-59179219 None:intergenic 40.0%
TCAAGTAACTCTTCTATGCG+AGG - chr1_4:59179230-59179249 Msa0173830:intron 40.0%
CAAGTAACTCTTCTATGCGA+GGG - chr1_4:59179231-59179250 Msa0173830:intron 40.0%
CAATGTGAAGGTAGCAAGAA+AGG - chr1_4:59179301-59179320 Msa0173830:intron 40.0%
!!! TCAAGCTGAGCTAGTTTTTC+AGG + chr1_4:59179332-59179351 None:intergenic 40.0%
CTCAGCTTGATGTTTCAAGA+TGG - chr1_4:59179342-59179361 Msa0173830:intron 40.0%
CTTCTTCTATGTACACCAGT+TGG + chr1_4:59179418-59179437 None:intergenic 40.0%
CAACTGGTGTACATAGAAGA+AGG - chr1_4:59179416-59179435 Msa0173830:intron 40.0%
AAGTGAGAGTTGTTCCTGAA+GGG - chr1_4:59179441-59179460 Msa0173830:intron 40.0%
!! CGTTTCATGCAATTTGTTGC+CGG - chr1_4:59179470-59179489 Msa0173830:intron 40.0%
TTGTTGCCGGAGATTTAATC+CGG - chr1_4:59179483-59179502 Msa0173830:intron 40.0%
ATTTAATCCGGTATCCGAAG+TGG - chr1_4:59179495-59179514 Msa0173830:CDS 40.0%
CGTTATAGTTTCCGAGCATA+TGG - chr1_4:59179557-59179576 Msa0173830:CDS 40.0%
! GCGAATGAGGTGAGAGATTT+TGG + chr1_4:59177366-59177385 None:intergenic 45.0%
CACTCGTTTCGTTCGTGAAT+TGG - chr1_4:59177515-59177534 Msa0173830:CDS 45.0%
ATCTCTGATCTCTTCCAGTC+GGG - chr1_4:59177955-59177974 Msa0173830:intron 45.0%
GATCGACCCTTACCATTTCA+AGG - chr1_4:59178345-59178364 Msa0173830:intron 45.0%
TGAGCAAGGGATCTAGGAAA+GGG + chr1_4:59178441-59178460 None:intergenic 45.0%
TAGGAATGACCTGTGAGCAA+GGG + chr1_4:59178454-59178473 None:intergenic 45.0%
ATAGGAATGACCTGTGAGCA+AGG + chr1_4:59178455-59178474 None:intergenic 45.0%
CTAACACAAGGGAAGGCAAT+AGG + chr1_4:59178473-59178492 None:intergenic 45.0%
ACACAGACTAACACAAGGGA+AGG + chr1_4:59178480-59178499 None:intergenic 45.0%
CACAGACACAGACTAACACA+AGG + chr1_4:59178485-59178504 None:intergenic 45.0%
CTCAGTAGGTGAGTATCCAA+TGG + chr1_4:59178606-59178625 None:intergenic 45.0%
GTCTCCTTCCTTCCTGATAT+AGG + chr1_4:59178790-59178809 None:intergenic 45.0%
AGATGGTCAGTATGGAAGAC+CGG - chr1_4:59179359-59179378 Msa0173830:intron 45.0%
TATGGAAGACCGGAAAATCC+AGG - chr1_4:59179369-59179388 Msa0173830:intron 45.0%
GAAGTGAGAGTTGTTCCTGA+AGG - chr1_4:59179440-59179459 Msa0173830:intron 45.0%
CGGATACCGGATTAAATCTC+CGG + chr1_4:59179492-59179511 None:intergenic 45.0%
AGATCAGCCTCAAACCACTT+CGG + chr1_4:59179512-59179531 None:intergenic 45.0%
! AGTGGTTTGAGGCTGATCTT+TGG - chr1_4:59179513-59179532 Msa0173830:CDS 45.0%
! GAGGCTGATCTTTGGTTCAA+TGG - chr1_4:59179521-59179540 Msa0173830:CDS 45.0%
! GCGAATGAGGTGAGAGATTT+TGG + chr1_4:59177366-59177385 None:intergenic 45.0%
CACTCGTTTCGTTCGTGAAT+TGG - chr1_4:59177515-59177534 Msa0173830:CDS 45.0%
ATCTCTGATCTCTTCCAGTC+GGG - chr1_4:59177955-59177974 Msa0173830:intron 45.0%
GATCGACCCTTACCATTTCA+AGG - chr1_4:59178345-59178364 Msa0173830:intron 45.0%
TGAGCAAGGGATCTAGGAAA+GGG + chr1_4:59178441-59178460 None:intergenic 45.0%
TAGGAATGACCTGTGAGCAA+GGG + chr1_4:59178454-59178473 None:intergenic 45.0%
ATAGGAATGACCTGTGAGCA+AGG + chr1_4:59178455-59178474 None:intergenic 45.0%
CTAACACAAGGGAAGGCAAT+AGG + chr1_4:59178473-59178492 None:intergenic 45.0%
ACACAGACTAACACAAGGGA+AGG + chr1_4:59178480-59178499 None:intergenic 45.0%
CACAGACACAGACTAACACA+AGG + chr1_4:59178485-59178504 None:intergenic 45.0%
CTCAGTAGGTGAGTATCCAA+TGG + chr1_4:59178606-59178625 None:intergenic 45.0%
GTCTCCTTCCTTCCTGATAT+AGG + chr1_4:59178790-59178809 None:intergenic 45.0%
AGATGGTCAGTATGGAAGAC+CGG - chr1_4:59179359-59179378 Msa0173830:intron 45.0%
TATGGAAGACCGGAAAATCC+AGG - chr1_4:59179369-59179388 Msa0173830:intron 45.0%
GAAGTGAGAGTTGTTCCTGA+AGG - chr1_4:59179440-59179459 Msa0173830:intron 45.0%
CGGATACCGGATTAAATCTC+CGG + chr1_4:59179492-59179511 None:intergenic 45.0%
AGATCAGCCTCAAACCACTT+CGG + chr1_4:59179512-59179531 None:intergenic 45.0%
! AGTGGTTTGAGGCTGATCTT+TGG - chr1_4:59179513-59179532 Msa0173830:CDS 45.0%
! GAGGCTGATCTTTGGTTCAA+TGG - chr1_4:59179521-59179540 Msa0173830:CDS 45.0%
CGTTTCGTTCGTGAATTGGG+TGG - chr1_4:59177519-59177538 Msa0173830:CDS 50.0%
! TGGGGTCAAGCAACTAGCTT+TGG - chr1_4:59177848-59177867 Msa0173830:intron 50.0%
GTGAGCAAGGGATCTAGGAA+AGG + chr1_4:59178442-59178461 None:intergenic 50.0%
TTCCTAGATCCCTTGCTCAC+AGG - chr1_4:59178442-59178461 Msa0173830:intron 50.0%
CAGGAAGGAAGGAGACTAAG+TGG - chr1_4:59178794-59178813 Msa0173830:intron 50.0%
! CCATGGCAACCTGGATTTTC+CGG + chr1_4:59179381-59179400 None:intergenic 50.0%
CGGAAAATCCAGGTTGCCAT+GGG - chr1_4:59179379-59179398 Msa0173830:intron 50.0%
AATCCAGGTTGCCATGGGAT+TGG - chr1_4:59179384-59179403 Msa0173830:intron 50.0%
ATGAAACGCTTGCTCCCTTC+AGG + chr1_4:59179458-59179477 None:intergenic 50.0%
CCTCAAACCACTTCGGATAC+CGG + chr1_4:59179505-59179524 None:intergenic 50.0%
CGTTTCGTTCGTGAATTGGG+TGG - chr1_4:59177519-59177538 Msa0173830:CDS 50.0%
! TGGGGTCAAGCAACTAGCTT+TGG - chr1_4:59177848-59177867 Msa0173830:intron 50.0%
GTGAGCAAGGGATCTAGGAA+AGG + chr1_4:59178442-59178461 None:intergenic 50.0%
TTCCTAGATCCCTTGCTCAC+AGG - chr1_4:59178442-59178461 Msa0173830:intron 50.0%
CAGGAAGGAAGGAGACTAAG+TGG - chr1_4:59178794-59178813 Msa0173830:intron 50.0%
! CCATGGCAACCTGGATTTTC+CGG + chr1_4:59179381-59179400 None:intergenic 50.0%
CGGAAAATCCAGGTTGCCAT+GGG - chr1_4:59179379-59179398 Msa0173830:intron 50.0%
AATCCAGGTTGCCATGGGAT+TGG - chr1_4:59179384-59179403 Msa0173830:intron 50.0%
ATGAAACGCTTGCTCCCTTC+AGG + chr1_4:59179458-59179477 None:intergenic 50.0%
CCTCAAACCACTTCGGATAC+CGG + chr1_4:59179505-59179524 None:intergenic 50.0%
CACTGTCGGACACTAGAGGT+CGG - chr1_4:59177931-59177950 Msa0173830:intron 55.0%
TCCAGTCGGGATTCAAACCG+TGG - chr1_4:59177968-59177987 Msa0173830:intron 55.0%
ACCACGGTTTGAATCCCGAC+TGG + chr1_4:59177972-59177991 None:intergenic 55.0%
GACCTGTGAGCAAGGGATCT+AGG + chr1_4:59178447-59178466 None:intergenic 55.0%
CCGGAAAATCCAGGTTGCCA+TGG - chr1_4:59179378-59179397 Msa0173830:intron 55.0%
TGGTCTACCTGCCAATCCCA+TGG + chr1_4:59179398-59179417 None:intergenic 55.0%
! GGATTGGCAGGTAGACCAAC+TGG - chr1_4:59179400-59179419 Msa0173830:intron 55.0%
CCGGTATCCGAAGTGGTTTG+AGG - chr1_4:59179502-59179521 Msa0173830:CDS 55.0%
CACTGTCGGACACTAGAGGT+CGG - chr1_4:59177931-59177950 Msa0173830:intron 55.0%
TCCAGTCGGGATTCAAACCG+TGG - chr1_4:59177968-59177987 Msa0173830:intron 55.0%
ACCACGGTTTGAATCCCGAC+TGG + chr1_4:59177972-59177991 None:intergenic 55.0%
GACCTGTGAGCAAGGGATCT+AGG + chr1_4:59178447-59178466 None:intergenic 55.0%
CCGGAAAATCCAGGTTGCCA+TGG - chr1_4:59179378-59179397 Msa0173830:intron 55.0%
TGGTCTACCTGCCAATCCCA+TGG + chr1_4:59179398-59179417 None:intergenic 55.0%
! GGATTGGCAGGTAGACCAAC+TGG - chr1_4:59179400-59179419 Msa0173830:intron 55.0%
CCGGTATCCGAAGTGGTTTG+AGG - chr1_4:59179502-59179521 Msa0173830:CDS 55.0%
! TGGGCACTGTCGGACACTAG+AGG - chr1_4:59177927-59177946 Msa0173830:intron 60.0%
CTGCCAATCCCATGGCAACC+TGG + chr1_4:59179390-59179409 None:intergenic 60.0%
! CAGGTTGCCATGGGATTGGC+AGG - chr1_4:59179388-59179407 Msa0173830:intron 60.0%
! TGGGCACTGTCGGACACTAG+AGG - chr1_4:59177927-59177946 Msa0173830:intron 60.0%
CTGCCAATCCCATGGCAACC+TGG + chr1_4:59179390-59179409 None:intergenic 60.0%
! CAGGTTGCCATGGGATTGGC+AGG - chr1_4:59179388-59179407 Msa0173830:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59177309 59179589 59177309 ID=Msa0173830;Name=Msa0173830
chr1_4 mRNA 59177309 59179589 59177309 ID=Msa0173830-mRNA-1;Parent=Msa0173830;Name=Msa0173830-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|0|0|2|0|177
chr1_4 exon 59179490 59179589 59179490 ID=Msa0173830-mRNA-1:exon:18542;Parent=Msa0173830-mRNA-1
chr1_4 exon 59177309 59177739 59177309 ID=Msa0173830-mRNA-1:exon:18541;Parent=Msa0173830-mRNA-1
chr1_4 CDS 59179490 59179589 59179490 ID=Msa0173830-mRNA-1:cds;Parent=Msa0173830-mRNA-1
chr1_4 CDS 59177309 59177739 59177309 ID=Msa0173830-mRNA-1:cds;Parent=Msa0173830-mRNA-1
Gene Sequence

>Msa0173830

GATAAAGCTGAATACCCAGAAAGGGTTTATCGTTTAACAGTAGCAGCAAGGAAACCAAAATCTCTCACCTCATTCGCAACTACAAATCTGCTTTCAAAAGGCATGGCAAGCTTGTTGACATCAACCTTCACCTATTCTCCTATCAACAATGGTTCAAGGAGTTTGAGAAAATCAAGTAACTCTTCTATGCGAGGGTGTTGCGTAAAAGCAATGAAGATAGAGAAATCCTTGGAAGAATTATACAATGTGAAGGTAGCAAGAAAGGTGTCACCTGAAAAACTAGCTCAGCTTGATGTTTCAAGATGGTCAGTATGGAAGACCGGAAAATCCAGGTTGCCATGGGATTGGCAGGTAGACCAACTGGTGTACATAGAAGAAGGTGAAGTGAGAGTTGTTCCTGAAGGGAGCAAGCGTTTCATGCAATTTGTTGCCGGAGATTTAATCCGGTATCCGAAGTGGTTTGAGGCTGATCTTTGGTTCAATGGTCCGTATCAAGAACGTTATAGTTTCCGAGCATATGGTGATGATTAT

Protein sequence

>Msa0173830

DKAEYPERVYRLTVAARKPKSLTSFATTNLLSKGMASLLTSTFTYSPINNGSRSLRKSSNSSMRGCCVKAMKIEKSLEELYNVKVARKVSPEKLAQLDVSRWSVWKTGKSRLPWDWQVDQLVYIEEGEVRVVPEGSKRFMQFVAGDLIRYPKWFEADLWFNGPYQERYSFRAYGDDY