AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0776220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776220 MtrunA17_Chr5g0431351 94.470 217 9 1 1 214 1 217 2.40e-145 403
Msa0776220 MtrunA17_Chr4g0071811 54.348 92 38 2 126 213 293 384 1.21e-22 94.4
Msa0776220 MtrunA17_Chr7g0226451 38.217 157 58 3 96 213 195 351 1.50e-20 88.2
Msa0776220 MtrunA17_Chr1g0209861 44.144 111 42 3 121 213 316 424 1.26e-19 86.3
Msa0776220 MtrunA17_Chr8g0390971 36.702 188 87 6 45 213 226 400 1.99e-19 85.5
Msa0776220 MtrunA17_Chr1g0150471 49.275 69 32 1 145 213 232 297 1.37e-13 68.2
Msa0776220 MtrunA17_Chr3g0136701 67.442 43 14 0 171 213 232 274 1.25e-11 62.4
Msa0776220 MtrunA17_Chr4g0072871 67.442 43 14 0 171 213 298 340 2.68e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776220 AT1G07050.1 61.538 117 34 4 103 213 82 193 1.98e-38 132
Msa0776220 AT1G07050.2 59.459 111 34 4 103 207 82 187 2.04e-33 119
Msa0776220 AT5G14370.1 53.211 109 36 3 120 213 228 336 2.84e-28 109
Msa0776220 AT4G25990.1 53.922 102 39 3 116 213 286 383 1.44e-23 97.4
Msa0776220 AT5G57180.2 53.846 91 40 2 123 213 337 425 7.98e-23 95.5
Msa0776220 AT1G73870.1 45.763 118 46 4 114 213 270 387 6.47e-21 90.1
Msa0776220 AT4G25990.2 47.009 117 39 4 116 213 286 398 7.77e-20 87.0
Msa0776220 AT1G25440.1 39.869 153 73 5 80 213 251 403 1.34e-19 86.3
Msa0776220 AT4G25990.3 52.083 96 38 3 116 207 286 377 1.97e-19 85.5
Msa0776220 AT1G49130.1 51.648 91 35 2 125 213 237 320 2.81e-19 84.7
Msa0776220 AT1G49130.2 51.648 91 35 2 125 213 230 313 2.97e-19 84.7
Msa0776220 AT5G57180.1 51.765 85 39 2 123 207 337 419 1.15e-18 84.0
Msa0776220 AT1G68520.1 41.525 118 51 3 114 213 282 399 1.17e-18 83.6
Msa0776220 AT2G24790.1 61.111 54 21 0 160 213 218 271 3.19e-13 67.4
Msa0776220 AT5G24930.1 53.226 62 29 0 152 213 276 337 4.71e-12 64.7
Msa0776220 AT5G57660.1 69.767 43 13 0 171 213 285 327 1.09e-11 63.5

Find 39 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGTGGCCTTAGATATTT+TGG 0.178831 5_2:-53802793 None:intergenic
ACTTCATGTTCTTCTTTCTT+TGG 0.183818 5_2:-53801304 None:intergenic
GGTCGGACCGTGGTTCTCTT+TGG 0.219465 5_2:+53801677 Msa0776220:CDS
GCTCTCTCTTCTTCCAATAT+TGG 0.250193 5_2:-53802479 None:intergenic
TTTGAACTATCAAGAGGTTT+TGG 0.259887 5_2:+53801648 Msa0776220:CDS
AAAAGTGTGACCTTGATTCT+TGG 0.281388 5_2:-53802605 None:intergenic
TCATTCTCTTCCAATTCTTT+AGG 0.300647 5_2:-53802885 None:intergenic
GTCGGACCGTGGTTCTCTTT+GGG 0.318029 5_2:+53801678 Msa0776220:CDS
TCCTTCTCTTCCTAAAGAAT+TGG 0.329210 5_2:+53802875 Msa0776220:three_prime_UTR
GAAGAGAAGCAAGTGTTCTT+AGG 0.336563 5_2:+53802504 Msa0776220:CDS
AATATCTTCCAAAATATCTA+AGG 0.342626 5_2:+53802785 Msa0776220:three_prime_UTR
GATGGGAGAAGTGCCAATAT+TGG 0.355037 5_2:+53802466 Msa0776220:intron
AGTGTAAGATTTGTTGAAGT+TGG 0.374346 5_2:-53801353 None:intergenic
ATAGTAGTAATGAGCTTCAT+TGG 0.401933 5_2:+53801470 Msa0776220:CDS
CTCATCTTTCCCTTCATCAA+AGG 0.415253 5_2:-53801518 None:intergenic
TCATCTTTCCCTTCATCAAA+GGG 0.428053 5_2:-53801517 None:intergenic
ACTAACATATGAGCCACTAT+TGG 0.440550 5_2:-53801731 None:intergenic
GAAGAGAAGGACAGATTGAA+TGG 0.450571 5_2:-53802863 None:intergenic
TGAGCTTCATTGGGATATCA+TGG 0.472007 5_2:+53801480 Msa0776220:CDS
GAAGGATTTCCCTTTGATGA+AGG 0.484035 5_2:+53801508 Msa0776220:CDS
TCCAATTCTTTAGGAAGAGA+AGG 0.489389 5_2:-53802876 None:intergenic
CATAAGCAAATACAATTATG+AGG 0.491361 5_2:+53801543 Msa0776220:CDS
AAAAGAGAAAATAACAATGA+TGG 0.501244 5_2:+53801580 Msa0776220:CDS
TAGTAGTAATGAGCTTCATT+GGG 0.508412 5_2:+53801471 Msa0776220:CDS
AAGGATTTCCCTTTGATGAA+GGG 0.518211 5_2:+53801509 Msa0776220:CDS
TCATTGGGATATCATGGAAT+GGG 0.521421 5_2:+53801486 Msa0776220:CDS
AACATATGAGCCACTATTGG+AGG 0.534168 5_2:-53801728 None:intergenic
TTCATTGGGATATCATGGAA+TGG 0.535775 5_2:+53801485 Msa0776220:CDS
GGTATTTGAGTGGTAGCGTC+TGG 0.540746 5_2:-53801328 None:intergenic
TTTGAATTTGAACTATCAAG+AGG 0.551159 5_2:+53801642 Msa0776220:CDS
CGCTTTGTGAAGAGACATTG+AGG 0.551371 5_2:+53802734 Msa0776220:CDS
TAAGATTTGTTGAAGTTGGA+TGG 0.551571 5_2:-53801349 None:intergenic
TGATAAAAGACCAAGAATCA+AGG 0.578251 5_2:+53802595 Msa0776220:CDS
ATATGAGCCACTATTGGAGG+AGG 0.606351 5_2:-53801725 None:intergenic
GAAGTTGGATGGTATTTGAG+TGG 0.615620 5_2:-53801338 None:intergenic
TTGGATGCATGGTCGGACCG+TGG 0.623784 5_2:+53801667 Msa0776220:CDS
TGGGATATCATGGAATGGGA+AGG 0.627947 5_2:+53801490 Msa0776220:CDS
AGTGGATGATGAAAAGAGTG+TGG 0.678709 5_2:+53801612 Msa0776220:CDS
CATTAGCCCAAAGAGAACCA+CGG 0.726854 5_2:-53801684 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATATAGTTGTTATA+TGG - chr5_2:53801885-53801904 None:intergenic 10.0%
!!! TAATTTTAAATAGTAACAAA+AGG - chr5_2:53801917-53801936 None:intergenic 10.0%
!!! TTTCTTTTTTTTTTTTCATT+GGG + chr5_2:53802650-53802669 Msa0776220:intron 10.0%
!! ATAATAATATAGTTGTTATA+TGG - chr5_2:53801885-53801904 None:intergenic 10.0%
!!! TAATTTTAAATAGTAACAAA+AGG - chr5_2:53801917-53801936 None:intergenic 10.0%
!!! TTTCTTTTTTTTTTTTCATT+GGG + chr5_2:53802650-53802669 Msa0776220:intron 10.0%
!!! TATCAATTCTTATTCTTTTT+AGG + chr5_2:53801834-53801853 Msa0776220:intron 15.0%
!! TAAACAAAAAAGAAATTACT+AGG - chr5_2:53802446-53802465 None:intergenic 15.0%
!!! TAATTTCTTTTTTGTTTAGA+TGG + chr5_2:53802448-53802467 Msa0776220:intron 15.0%
!!! AATTTCTTTTTTGTTTAGAT+GGG + chr5_2:53802449-53802468 Msa0776220:intron 15.0%
!!! GTTTCTTTTTTTTTTTTCAT+TGG + chr5_2:53802649-53802668 Msa0776220:intron 15.0%
!!! ATATTTATTTTTTTGAGAGA+AGG - chr5_2:53802938-53802957 None:intergenic 15.0%
!!! TATCAATTCTTATTCTTTTT+AGG + chr5_2:53801834-53801853 Msa0776220:intron 15.0%
!! TAAACAAAAAAGAAATTACT+AGG - chr5_2:53802446-53802465 None:intergenic 15.0%
!!! TAATTTCTTTTTTGTTTAGA+TGG + chr5_2:53802448-53802467 Msa0776220:intron 15.0%
!!! AATTTCTTTTTTGTTTAGAT+GGG + chr5_2:53802449-53802468 Msa0776220:intron 15.0%
!!! GTTTCTTTTTTTTTTTTCAT+TGG + chr5_2:53802649-53802668 Msa0776220:intron 15.0%
!!! ATATTTATTTTTTTGAGAGA+AGG - chr5_2:53802938-53802957 None:intergenic 15.0%
!! AAAAGAGAAAATAACAATGA+TGG + chr5_2:53801580-53801599 Msa0776220:CDS 20.0%
!!! AAAATAACAATGATGGTTTT+TGG + chr5_2:53801587-53801606 Msa0776220:CDS 20.0%
!!! AAATAACAATGATGGTTTTT+GGG + chr5_2:53801588-53801607 Msa0776220:CDS 20.0%
!! TTATATATGAAAGTGAAGAT+TGG - chr5_2:53801766-53801785 None:intergenic 20.0%
!!! TTTTTGGATAAGTTGTTATA+TGG - chr5_2:53801860-53801879 None:intergenic 20.0%
!! ATATAACAACTTATCCAAAA+AGG + chr5_2:53801859-53801878 Msa0776220:intron 20.0%
!!! TTTGTCGATAACTAAATTTT+TGG + chr5_2:53802190-53802209 Msa0776220:intron 20.0%
!!! ATAACTAAATTTTTGGTGAT+AGG + chr5_2:53802197-53802216 Msa0776220:intron 20.0%
!!! GTAACATATTTAGTTCATTT+TGG + chr5_2:53802293-53802312 Msa0776220:intron 20.0%
!!! TTTTGTGATATTTTTGATGT+AGG + chr5_2:53802709-53802728 Msa0776220:intron 20.0%
!!! TTTGTGATATTTTTGATGTA+GGG + chr5_2:53802710-53802729 Msa0776220:intron 20.0%
!!! GATATTTTGGAAGATATTTT+AGG - chr5_2:53802783-53802802 None:intergenic 20.0%
!! AATATCTTCCAAAATATCTA+AGG + chr5_2:53802785-53802804 Msa0776220:three_prime_UTR 20.0%
!! TGAATTAAAAATACAAGTAG+AGG - chr5_2:53802816-53802835 None:intergenic 20.0%
!! AAAAGAGAAAATAACAATGA+TGG + chr5_2:53801580-53801599 Msa0776220:CDS 20.0%
!!! AAAATAACAATGATGGTTTT+TGG + chr5_2:53801587-53801606 Msa0776220:CDS 20.0%
!!! AAATAACAATGATGGTTTTT+GGG + chr5_2:53801588-53801607 Msa0776220:CDS 20.0%
!! TTATATATGAAAGTGAAGAT+TGG - chr5_2:53801766-53801785 None:intergenic 20.0%
!!! TTTTTGGATAAGTTGTTATA+TGG - chr5_2:53801860-53801879 None:intergenic 20.0%
!! ATATAACAACTTATCCAAAA+AGG + chr5_2:53801859-53801878 Msa0776220:intron 20.0%
!!! TTTGTCGATAACTAAATTTT+TGG + chr5_2:53802190-53802209 Msa0776220:intron 20.0%
!!! ATAACTAAATTTTTGGTGAT+AGG + chr5_2:53802197-53802216 Msa0776220:intron 20.0%
!!! GTAACATATTTAGTTCATTT+TGG + chr5_2:53802293-53802312 Msa0776220:intron 20.0%
!!! TTTTGTGATATTTTTGATGT+AGG + chr5_2:53802709-53802728 Msa0776220:intron 20.0%
!!! TTTGTGATATTTTTGATGTA+GGG + chr5_2:53802710-53802729 Msa0776220:intron 20.0%
!!! GATATTTTGGAAGATATTTT+AGG - chr5_2:53802783-53802802 None:intergenic 20.0%
!! AATATCTTCCAAAATATCTA+AGG + chr5_2:53802785-53802804 Msa0776220:three_prime_UTR 20.0%
!! TGAATTAAAAATACAAGTAG+AGG - chr5_2:53802816-53802835 None:intergenic 20.0%
! CATAAGCAAATACAATTATG+AGG + chr5_2:53801543-53801562 Msa0776220:CDS 25.0%
! TTTGAATTTGAACTATCAAG+AGG + chr5_2:53801642-53801661 Msa0776220:CDS 25.0%
! TATTACTTAATTGACACCAA+CGG - chr5_2:53802060-53802079 None:intergenic 25.0%
!!! TATGTTGACTTTTGTTTAGA+TGG + chr5_2:53802078-53802097 Msa0776220:intron 25.0%
! TTATTCGATCTATTCAATTG+TGG + chr5_2:53802161-53802180 Msa0776220:intron 25.0%
! CATAAGCAAATACAATTATG+AGG + chr5_2:53801543-53801562 Msa0776220:CDS 25.0%
! TTTGAATTTGAACTATCAAG+AGG + chr5_2:53801642-53801661 Msa0776220:CDS 25.0%
! TATTACTTAATTGACACCAA+CGG - chr5_2:53802060-53802079 None:intergenic 25.0%
!!! TATGTTGACTTTTGTTTAGA+TGG + chr5_2:53802078-53802097 Msa0776220:intron 25.0%
! TTATTCGATCTATTCAATTG+TGG + chr5_2:53802161-53802180 Msa0776220:intron 25.0%
ACTTCATGTTCTTCTTTCTT+TGG - chr5_2:53801307-53801326 None:intergenic 30.0%
!! TAAGATTTGTTGAAGTTGGA+TGG - chr5_2:53801352-53801371 None:intergenic 30.0%
!! AGTGTAAGATTTGTTGAAGT+TGG - chr5_2:53801356-53801375 None:intergenic 30.0%
! CTACTATTACAAGTGTTTTG+TGG - chr5_2:53801457-53801476 None:intergenic 30.0%
ATAGTAGTAATGAGCTTCAT+TGG + chr5_2:53801470-53801489 Msa0776220:CDS 30.0%
TAGTAGTAATGAGCTTCATT+GGG + chr5_2:53801471-53801490 Msa0776220:CDS 30.0%
! TTTGAACTATCAAGAGGTTT+TGG + chr5_2:53801648-53801667 Msa0776220:CDS 30.0%
! TAGTTGTTATATGGCCTTTT+TGG - chr5_2:53801876-53801895 None:intergenic 30.0%
! GCAAGAATAGTCATCAATTT+TGG - chr5_2:53801974-53801993 None:intergenic 30.0%
ATTACTTAATTGACACCAAC+GGG - chr5_2:53802059-53802078 None:intergenic 30.0%
AAAACCTATTATCCAGAAAG+CGG - chr5_2:53802122-53802141 None:intergenic 30.0%
TGATAAAAGACCAAGAATCA+AGG + chr5_2:53802595-53802614 Msa0776220:CDS 30.0%
TAAAAATACAAGTAGAGGAG+TGG - chr5_2:53802811-53802830 None:intergenic 30.0%
TCATTCTCTTCCAATTCTTT+AGG - chr5_2:53802888-53802907 None:intergenic 30.0%
ACTTCATGTTCTTCTTTCTT+TGG - chr5_2:53801307-53801326 None:intergenic 30.0%
!! TAAGATTTGTTGAAGTTGGA+TGG - chr5_2:53801352-53801371 None:intergenic 30.0%
!! AGTGTAAGATTTGTTGAAGT+TGG - chr5_2:53801356-53801375 None:intergenic 30.0%
! CTACTATTACAAGTGTTTTG+TGG - chr5_2:53801457-53801476 None:intergenic 30.0%
ATAGTAGTAATGAGCTTCAT+TGG + chr5_2:53801470-53801489 Msa0776220:CDS 30.0%
TAGTAGTAATGAGCTTCATT+GGG + chr5_2:53801471-53801490 Msa0776220:CDS 30.0%
! TTTGAACTATCAAGAGGTTT+TGG + chr5_2:53801648-53801667 Msa0776220:CDS 30.0%
! TAGTTGTTATATGGCCTTTT+TGG - chr5_2:53801876-53801895 None:intergenic 30.0%
! GCAAGAATAGTCATCAATTT+TGG - chr5_2:53801974-53801993 None:intergenic 30.0%
ATTACTTAATTGACACCAAC+GGG - chr5_2:53802059-53802078 None:intergenic 30.0%
AAAACCTATTATCCAGAAAG+CGG - chr5_2:53802122-53802141 None:intergenic 30.0%
TGATAAAAGACCAAGAATCA+AGG + chr5_2:53802595-53802614 Msa0776220:CDS 30.0%
TAAAAATACAAGTAGAGGAG+TGG - chr5_2:53802811-53802830 None:intergenic 30.0%
TCATTCTCTTCCAATTCTTT+AGG - chr5_2:53802888-53802907 None:intergenic 30.0%
TTCATTGGGATATCATGGAA+TGG + chr5_2:53801485-53801504 Msa0776220:CDS 35.0%
TCATTGGGATATCATGGAAT+GGG + chr5_2:53801486-53801505 Msa0776220:CDS 35.0%
AAGGATTTCCCTTTGATGAA+GGG + chr5_2:53801509-53801528 Msa0776220:CDS 35.0%
TCATCTTTCCCTTCATCAAA+GGG - chr5_2:53801520-53801539 None:intergenic 35.0%
ACTAACATATGAGCCACTAT+TGG - chr5_2:53801734-53801753 None:intergenic 35.0%
! CACATAAAGATTTTACCCGT+TGG + chr5_2:53802041-53802060 Msa0776220:intron 35.0%
GATAGGTAATCTTTGATGCT+TGG + chr5_2:53802214-53802233 Msa0776220:intron 35.0%
!! CAGCGTTTAATTTTCGAACT+TGG - chr5_2:53802577-53802596 None:intergenic 35.0%
! AAAAGTGTGACCTTGATTCT+TGG - chr5_2:53802608-53802627 None:intergenic 35.0%
TCCTTCTCTTCCTAAAGAAT+TGG + chr5_2:53802875-53802894 Msa0776220:three_prime_UTR 35.0%
! TCCAATTCTTTAGGAAGAGA+AGG - chr5_2:53802879-53802898 None:intergenic 35.0%
AAGAGATGAAGTGTATCTCA+TGG - chr5_2:53801278-53801297 None:intergenic 35.0%
TTCATTGGGATATCATGGAA+TGG + chr5_2:53801485-53801504 Msa0776220:CDS 35.0%
TCATTGGGATATCATGGAAT+GGG + chr5_2:53801486-53801505 Msa0776220:CDS 35.0%
AAGGATTTCCCTTTGATGAA+GGG + chr5_2:53801509-53801528 Msa0776220:CDS 35.0%
TCATCTTTCCCTTCATCAAA+GGG - chr5_2:53801520-53801539 None:intergenic 35.0%
ACTAACATATGAGCCACTAT+TGG - chr5_2:53801734-53801753 None:intergenic 35.0%
! CACATAAAGATTTTACCCGT+TGG + chr5_2:53802041-53802060 Msa0776220:intron 35.0%
GATAGGTAATCTTTGATGCT+TGG + chr5_2:53802214-53802233 Msa0776220:intron 35.0%
!! CAGCGTTTAATTTTCGAACT+TGG - chr5_2:53802577-53802596 None:intergenic 35.0%
! AAAAGTGTGACCTTGATTCT+TGG - chr5_2:53802608-53802627 None:intergenic 35.0%
TCCTTCTCTTCCTAAAGAAT+TGG + chr5_2:53802875-53802894 Msa0776220:three_prime_UTR 35.0%
! TCCAATTCTTTAGGAAGAGA+AGG - chr5_2:53802879-53802898 None:intergenic 35.0%
GAAGTTGGATGGTATTTGAG+TGG - chr5_2:53801341-53801360 None:intergenic 40.0%
TGAGCTTCATTGGGATATCA+TGG + chr5_2:53801480-53801499 Msa0776220:CDS 40.0%
GAAGGATTTCCCTTTGATGA+AGG + chr5_2:53801508-53801527 Msa0776220:CDS 40.0%
CTCATCTTTCCCTTCATCAA+AGG - chr5_2:53801521-53801540 None:intergenic 40.0%
!! CAATGATGGTTTTTGGGAAG+TGG + chr5_2:53801594-53801613 Msa0776220:CDS 40.0%
AGTGGATGATGAAAAGAGTG+TGG + chr5_2:53801612-53801631 Msa0776220:CDS 40.0%
!!! ATCAAGAGGTTTTGGATGCA+TGG + chr5_2:53801656-53801675 Msa0776220:CDS 40.0%
! TCATTTTCCTCCTCCAATAG+TGG + chr5_2:53801718-53801737 Msa0776220:CDS 40.0%
AACATATGAGCCACTATTGG+AGG - chr5_2:53801731-53801750 None:intergenic 40.0%
TTGACCGCTTTCTGGATAAT+AGG + chr5_2:53802115-53802134 Msa0776220:intron 40.0%
GCTCTCTCTTCTTCCAATAT+TGG - chr5_2:53802482-53802501 None:intergenic 40.0%
GAAGAGAAGCAAGTGTTCTT+AGG + chr5_2:53802504-53802523 Msa0776220:CDS 40.0%
!! AGGAGTGGCCTTAGATATTT+TGG - chr5_2:53802796-53802815 None:intergenic 40.0%
GAAGAGAAGGACAGATTGAA+TGG - chr5_2:53802866-53802885 None:intergenic 40.0%
GAAGTTGGATGGTATTTGAG+TGG - chr5_2:53801341-53801360 None:intergenic 40.0%
TGAGCTTCATTGGGATATCA+TGG + chr5_2:53801480-53801499 Msa0776220:CDS 40.0%
GAAGGATTTCCCTTTGATGA+AGG + chr5_2:53801508-53801527 Msa0776220:CDS 40.0%
CTCATCTTTCCCTTCATCAA+AGG - chr5_2:53801521-53801540 None:intergenic 40.0%
!! CAATGATGGTTTTTGGGAAG+TGG + chr5_2:53801594-53801613 Msa0776220:CDS 40.0%
AGTGGATGATGAAAAGAGTG+TGG + chr5_2:53801612-53801631 Msa0776220:CDS 40.0%
!!! ATCAAGAGGTTTTGGATGCA+TGG + chr5_2:53801656-53801675 Msa0776220:CDS 40.0%
! TCATTTTCCTCCTCCAATAG+TGG + chr5_2:53801718-53801737 Msa0776220:CDS 40.0%
AACATATGAGCCACTATTGG+AGG - chr5_2:53801731-53801750 None:intergenic 40.0%
TTGACCGCTTTCTGGATAAT+AGG + chr5_2:53802115-53802134 Msa0776220:intron 40.0%
GCTCTCTCTTCTTCCAATAT+TGG - chr5_2:53802482-53802501 None:intergenic 40.0%
GAAGAGAAGCAAGTGTTCTT+AGG + chr5_2:53802504-53802523 Msa0776220:CDS 40.0%
!! AGGAGTGGCCTTAGATATTT+TGG - chr5_2:53802796-53802815 None:intergenic 40.0%
GAAGAGAAGGACAGATTGAA+TGG - chr5_2:53802866-53802885 None:intergenic 40.0%
TGGGATATCATGGAATGGGA+AGG + chr5_2:53801490-53801509 Msa0776220:CDS 45.0%
!!! AGAGGTTTTGGATGCATGGT+CGG + chr5_2:53801660-53801679 Msa0776220:CDS 45.0%
CATTAGCCCAAAGAGAACCA+CGG - chr5_2:53801687-53801706 None:intergenic 45.0%
ATATGAGCCACTATTGGAGG+AGG - chr5_2:53801728-53801747 None:intergenic 45.0%
AACTCTTGTTGACCGCTTTC+TGG + chr5_2:53802107-53802126 Msa0776220:intron 45.0%
!! GATGGGAGAAGTGCCAATAT+TGG + chr5_2:53802466-53802485 Msa0776220:intron 45.0%
CGCTTTGTGAAGAGACATTG+AGG + chr5_2:53802734-53802753 Msa0776220:CDS 45.0%
TGGGATATCATGGAATGGGA+AGG + chr5_2:53801490-53801509 Msa0776220:CDS 45.0%
!!! AGAGGTTTTGGATGCATGGT+CGG + chr5_2:53801660-53801679 Msa0776220:CDS 45.0%
CATTAGCCCAAAGAGAACCA+CGG - chr5_2:53801687-53801706 None:intergenic 45.0%
ATATGAGCCACTATTGGAGG+AGG - chr5_2:53801728-53801747 None:intergenic 45.0%
AACTCTTGTTGACCGCTTTC+TGG + chr5_2:53802107-53802126 Msa0776220:intron 45.0%
!! GATGGGAGAAGTGCCAATAT+TGG + chr5_2:53802466-53802485 Msa0776220:intron 45.0%
CGCTTTGTGAAGAGACATTG+AGG + chr5_2:53802734-53802753 Msa0776220:CDS 45.0%
! GGTATTTGAGTGGTAGCGTC+TGG - chr5_2:53801331-53801350 None:intergenic 50.0%
! GGTATTTGAGTGGTAGCGTC+TGG - chr5_2:53801331-53801350 None:intergenic 50.0%
GTCGGACCGTGGTTCTCTTT+GGG + chr5_2:53801678-53801697 Msa0776220:CDS 55.0%
GTCGGACCGTGGTTCTCTTT+GGG + chr5_2:53801678-53801697 Msa0776220:CDS 55.0%
TTGGATGCATGGTCGGACCG+TGG + chr5_2:53801667-53801686 Msa0776220:CDS 60.0%
GGTCGGACCGTGGTTCTCTT+TGG + chr5_2:53801677-53801696 Msa0776220:CDS 60.0%
TTGGATGCATGGTCGGACCG+TGG + chr5_2:53801667-53801686 Msa0776220:CDS 60.0%
GGTCGGACCGTGGTTCTCTT+TGG + chr5_2:53801677-53801696 Msa0776220:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 53801277 53802968 53801277 ID=Msa0776220;Name=Msa0776220
chr5_2 mRNA 53801277 53802968 53801277 ID=Msa0776220-mRNA-1;Parent=Msa0776220;Name=Msa0776220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|1|0.5|0.33|3|214|214
chr5_2 exon 53801277 53801747 53801277 ID=Msa0776220-mRNA-1:exon:16096;Parent=Msa0776220-mRNA-1
chr5_2 exon 53802467 53802616 53802467 ID=Msa0776220-mRNA-1:exon:16097;Parent=Msa0776220-mRNA-1
chr5_2 exon 53802731 53802968 53802731 ID=Msa0776220-mRNA-1:exon:16098;Parent=Msa0776220-mRNA-1
chr5_2 CDS 53801277 53801747 53801277 ID=Msa0776220-mRNA-1:cds;Parent=Msa0776220-mRNA-1
chr5_2 CDS 53802467 53802616 53802467 ID=Msa0776220-mRNA-1:cds;Parent=Msa0776220-mRNA-1
chr5_2 CDS 53802731 53802754 53802731 ID=Msa0776220-mRNA-1:cds;Parent=Msa0776220-mRNA-1
chr5_2 three_prime_UTR 53802755 53802968 53802755 ID=Msa0776220-mRNA-1:three_prime_utr;Parent=Msa0776220-mRNA-1
Gene Sequence

>Msa0776220

ATGAGATACACTTCATCTCTTAGAAGTCCAAAGAAAGAAGAACATGAAGTACCAGACGCTACCACTCAAATACCATCCAACTTCAACAAATCTTACACTAATGAAGATTTCTATCTTTTCGACGAACTCGAAGAGTACTTGAACATTGAAGAAGAAGAAGAACAAAAGTTATCATCACCACAAAACACTTGTAATAGTAGTAATGAGCTTCATTGGGATATCATGGAATGGGAAGGATTTCCCTTTGATGAAGGGAAAGATGAGAACATAAGCAAATACAATTATGAGGAGAAGAAAATAATAAAAAGAGAAAATAACAATGATGGTTTTTGGGAAGTGGATGATGAAAAGAGTGTGGCTTTGAATTTGAATTTGAACTATCAAGAGGTTTTGGATGCATGGTCGGACCGTGGTTCTCTTTGGGCTAATGATTGTTCTCTTTCATTTTCCTCCTCCAATAGTGGCTCATATATGGGAGAAGTGCCAATATTGGAAGAAGAGAGAGCAAGAAGAGAAGCAAGTGTTCTTAGGTACAAAGAAAAACGTCAGAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGAAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACATTGA

Protein sequence

>Msa0776220

MRYTSSLRSPKKEEHEVPDATTQIPSNFNKSYTNEDFYLFDELEEYLNIEEEEEQKLSSPQNTCNSSNELHWDIMEWEGFPFDEGKDENISKYNYEEKKIIKRENNNDGFWEVDDEKSVALNLNLNYQEVLDAWSDRGSLWANDCSLSFSSSNSGSYMGEVPILEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH*