AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0734660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734660 MtrunA17_Chr5g0431351 95.392 217 8 1 1 215 1 217 4.92e-147 407
Msa0734660 MtrunA17_Chr4g0071811 54.348 92 38 2 127 214 293 384 1.22e-22 94.4
Msa0734660 MtrunA17_Chr7g0226451 39.850 133 41 3 121 214 219 351 2.01e-20 87.8
Msa0734660 MtrunA17_Chr1g0209861 44.144 111 42 3 122 214 316 424 1.89e-19 85.9
Msa0734660 MtrunA17_Chr8g0390971 41.727 139 53 4 92 214 274 400 4.74e-18 81.6
Msa0734660 MtrunA17_Chr1g0150471 49.275 69 32 1 146 214 232 297 2.46e-13 67.8
Msa0734660 MtrunA17_Chr3g0136701 67.442 43 14 0 172 214 232 274 2.02e-11 62.0
Msa0734660 MtrunA17_Chr4g0072871 67.442 43 14 0 172 214 298 340 4.26e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734660 AT1G07050.1 63.964 111 29 4 110 214 88 193 3.29e-38 131
Msa0734660 AT1G07050.2 62.857 105 28 5 110 208 88 187 3.02e-33 119
Msa0734660 AT5G14370.1 53.211 109 36 3 121 214 228 336 3.31e-28 108
Msa0734660 AT4G25990.1 53.922 102 39 3 117 214 286 383 2.04e-23 97.1
Msa0734660 AT5G57180.2 53.846 91 40 2 124 214 337 425 9.51e-23 95.5
Msa0734660 AT1G73870.1 42.553 141 57 5 92 214 253 387 8.26e-21 89.7
Msa0734660 AT4G25990.2 47.009 117 39 4 117 214 286 398 1.01e-19 86.7
Msa0734660 AT4G25990.3 52.083 96 38 3 117 208 286 377 2.53e-19 85.5
Msa0734660 AT1G49130.1 52.747 91 34 3 126 214 237 320 3.31e-19 84.7
Msa0734660 AT1G49130.2 51.648 91 35 2 126 214 230 313 3.95e-19 84.3
Msa0734660 AT1G25440.1 39.869 153 73 5 81 214 251 403 6.64e-19 84.3
Msa0734660 AT5G57180.1 51.765 85 39 2 124 208 337 419 1.44e-18 83.6
Msa0734660 AT1G68520.1 41.525 118 51 3 115 214 282 399 1.73e-18 83.2
Msa0734660 AT2G24790.1 61.111 54 21 0 161 214 218 271 5.31e-13 67.0
Msa0734660 AT5G24930.1 53.226 62 29 0 153 214 276 337 7.10e-12 63.9
Msa0734660 AT5G57660.1 69.767 43 13 0 172 214 285 327 1.84e-11 62.8

Find 41 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGGCCTTAGATATTT+TGG 0.178831 5_1:-48986915 None:intergenic
ACTTCATGTTCTTCTTTCTT+TGG 0.183818 5_1:-48985421 None:intergenic
GGTCTGACCGTGGCTCTCTT+TGG 0.244079 5_1:+48985797 Msa0734660:CDS
GCTCTCTCTTCTTCCAATAT+TGG 0.250193 5_1:-48986600 None:intergenic
TTTGAATTATCAAGAGGTTT+TGG 0.259887 5_1:+48985768 Msa0734660:CDS
AAAAGTGTGACCTTGATTCT+TGG 0.281388 5_1:-48986726 None:intergenic
ATATTCTCTTCCAATTCTTT+AGG 0.300647 5_1:-48987009 None:intergenic
CCCTTCTCTTCCTAAAGAAT+TGG 0.313359 5_1:+48986999 Msa0734660:three_prime_UTR
GAAGAGAAGCAAGTGTTCTT+AGG 0.336563 5_1:+48986625 Msa0734660:CDS
GTCTGACCGTGGCTCTCTTT+GGG 0.337400 5_1:+48985798 Msa0734660:CDS
AATATCTTCCAAAATATCTA+AGG 0.342626 5_1:+48986907 Msa0734660:three_prime_UTR
GATGGGAGAAGTGCCAATAT+TGG 0.355037 5_1:+48986587 Msa0734660:intron
ATAGTAGTAATGAGCTTCAT+TGG 0.401933 5_1:+48985590 Msa0734660:CDS
GTGTAAGATTTGTTGAAGTT+TGG 0.413457 5_1:-48985469 None:intergenic
CTCATCTTTCCCTTCATCAA+AGG 0.416152 5_1:-48985638 None:intergenic
AAGAGAGAAAATTACAATGA+TGG 0.429279 5_1:+48985700 Msa0734660:CDS
GGTCTTTGAGTGGTAGCTTC+TGG 0.429886 5_1:-48985445 None:intergenic
TCATCTTTCCCTTCATCAAA+GGG 0.442462 5_1:-48985637 None:intergenic
GAAGAGAAGGGCAAATTGAA+TGG 0.465972 5_1:-48986987 None:intergenic
TGAGCTTCATTGGGATATCA+TGG 0.472007 5_1:+48985600 Msa0734660:CDS
TCCAATTCTTTAGGAAGAGA+AGG 0.484138 5_1:-48987000 None:intergenic
GAGGGATTCCCCTTTGATGA+AGG 0.486476 5_1:+48985628 Msa0734660:CDS
ACTAACATAGGAGCCACTAT+TGG 0.497136 5_1:-48985851 None:intergenic
TAAGATTTGTTGAAGTTTGG+TGG 0.507600 5_1:-48985466 None:intergenic
TAGTAGTAATGAGCTTCATT+GGG 0.508412 5_1:+48985591 Msa0734660:CDS
CCAATTCTTTAGGAAGAGAA+GGG 0.518415 5_1:-48986999 None:intergenic
TCATTGGGATATCATGGAAT+GGG 0.534580 5_1:+48985606 Msa0734660:CDS
TTCATTGGGATATCATGGAA+TGG 0.539426 5_1:+48985605 Msa0734660:CDS
TTTGAATTTGAATTATCAAG+AGG 0.541289 5_1:+48985762 Msa0734660:CDS
AACATAGGAGCCACTATTGG+AGG 0.541652 5_1:-48985848 None:intergenic
AGGGATTCCCCTTTGATGAA+GGG 0.549524 5_1:+48985629 Msa0734660:CDS
CGCTTTGTGAAGAGACATTG+AGG 0.551371 5_1:+48986856 Msa0734660:CDS
TGATAAAAGACCAAGAATCA+AGG 0.578251 5_1:+48986716 Msa0734660:CDS
CATCTTTCCCTTCATCAAAG+GGG 0.598262 5_1:-48985636 None:intergenic
ATAGGAGCCACTATTGGAGG+AGG 0.606351 5_1:-48985845 None:intergenic
TTGGGATATCATGGAATGGG+AGG 0.609318 5_1:+48985609 Msa0734660:CDS
GAAGTTTGGTGGTCTTTGAG+TGG 0.614300 5_1:-48985455 None:intergenic
TGGGATATCATGGAATGGGA+GGG 0.659236 5_1:+48985610 Msa0734660:CDS
CATTAGCCCAAAGAGAGCCA+CGG 0.677020 5_1:-48985804 None:intergenic
AGTGGATGATGAAAAGAGTG+TGG 0.678709 5_1:+48985732 Msa0734660:CDS
TTGGATGCATGGTCTGACCG+TGG 0.694015 5_1:+48985787 Msa0734660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAATATTGTTGTTATA+TGG - chr5_1:48986005-48986024 None:intergenic 10.0%
!!! TAATTTTAAATAGTAACAAA+AGG - chr5_1:48986037-48986056 None:intergenic 10.0%
!!! TAATTTATTTTTTGTTTAGA+TGG + chr5_1:48986569-48986588 Msa0734660:intron 10.0%
!!! AATTTATTTTTTGTTTAGAT+GGG + chr5_1:48986570-48986589 Msa0734660:intron 10.0%
!!! ATAATAATATTGTTGTTATA+TGG - chr5_1:48986005-48986024 None:intergenic 10.0%
!!! TAATTTTAAATAGTAACAAA+AGG - chr5_1:48986037-48986056 None:intergenic 10.0%
!!! TAATTTATTTTTTGTTTAGA+TGG + chr5_1:48986569-48986588 Msa0734660:intron 10.0%
!!! AATTTATTTTTTGTTTAGAT+GGG + chr5_1:48986570-48986589 Msa0734660:intron 10.0%
!!! TTTCTTTTTTTCTTTTTCAT+TGG + chr5_1:48986771-48986790 Msa0734660:intron 15.0%
!!! TTCTTTTTTTCTTTTTCATT+GGG + chr5_1:48986772-48986791 Msa0734660:intron 15.0%
!!! TTTCTTTTTTTCTTTTTCAT+TGG + chr5_1:48986771-48986790 Msa0734660:intron 15.0%
!!! TTCTTTTTTTCTTTTTCATT+GGG + chr5_1:48986772-48986791 Msa0734660:intron 15.0%
!!! AAAATTACAATGATGGTTTT+TGG + chr5_1:48985707-48985726 Msa0734660:CDS 20.0%
!!! AAATTACAATGATGGTTTTT+GGG + chr5_1:48985708-48985727 Msa0734660:CDS 20.0%
!! TTTGAATTTGAATTATCAAG+AGG + chr5_1:48985762-48985781 Msa0734660:CDS 20.0%
!! TTATATATGAAAGTGAAGAT+TGG - chr5_1:48985886-48985905 None:intergenic 20.0%
!! CTTAAAAGAATAAGAATTGA+TGG - chr5_1:48985956-48985975 None:intergenic 20.0%
!!! CATCAATTCTTATTCTTTTA+AGG + chr5_1:48985954-48985973 Msa0734660:intron 20.0%
!!! TTTGTCGATAACTAAATTTT+TGG + chr5_1:48986311-48986330 Msa0734660:intron 20.0%
!!! ATAACTAAATTTTTGGTGAT+AGG + chr5_1:48986318-48986337 Msa0734660:intron 20.0%
!!! GTAACATATTTAGTTCATTT+TGG + chr5_1:48986414-48986433 Msa0734660:intron 20.0%
!!! TTGTAATGAAAACATCTTTT+TGG + chr5_1:48986813-48986832 Msa0734660:intron 20.0%
!!! GATATTTTGGAAGATATTTT+AGG - chr5_1:48986905-48986924 None:intergenic 20.0%
!! AATATCTTCCAAAATATCTA+AGG + chr5_1:48986907-48986926 Msa0734660:three_prime_UTR 20.0%
!! AAGAAAAAAAATACAAGTAG+AGG - chr5_1:48986938-48986957 None:intergenic 20.0%
!!! AAAATTACAATGATGGTTTT+TGG + chr5_1:48985707-48985726 Msa0734660:CDS 20.0%
!!! AAATTACAATGATGGTTTTT+GGG + chr5_1:48985708-48985727 Msa0734660:CDS 20.0%
!! TTTGAATTTGAATTATCAAG+AGG + chr5_1:48985762-48985781 Msa0734660:CDS 20.0%
!! TTATATATGAAAGTGAAGAT+TGG - chr5_1:48985886-48985905 None:intergenic 20.0%
!! CTTAAAAGAATAAGAATTGA+TGG - chr5_1:48985956-48985975 None:intergenic 20.0%
!!! CATCAATTCTTATTCTTTTA+AGG + chr5_1:48985954-48985973 Msa0734660:intron 20.0%
!!! TTTGTCGATAACTAAATTTT+TGG + chr5_1:48986311-48986330 Msa0734660:intron 20.0%
!!! ATAACTAAATTTTTGGTGAT+AGG + chr5_1:48986318-48986337 Msa0734660:intron 20.0%
!!! GTAACATATTTAGTTCATTT+TGG + chr5_1:48986414-48986433 Msa0734660:intron 20.0%
!!! TTGTAATGAAAACATCTTTT+TGG + chr5_1:48986813-48986832 Msa0734660:intron 20.0%
!!! GATATTTTGGAAGATATTTT+AGG - chr5_1:48986905-48986924 None:intergenic 20.0%
!! AATATCTTCCAAAATATCTA+AGG + chr5_1:48986907-48986926 Msa0734660:three_prime_UTR 20.0%
!! AAGAAAAAAAATACAAGTAG+AGG - chr5_1:48986938-48986957 None:intergenic 20.0%
! AAGAGAGAAAATTACAATGA+TGG + chr5_1:48985700-48985719 Msa0734660:CDS 25.0%
!! TTTGAATTATCAAGAGGTTT+TGG + chr5_1:48985768-48985787 Msa0734660:CDS 25.0%
! TGGATAATGAATACTAACAT+AGG - chr5_1:48985866-48985885 None:intergenic 25.0%
!! TTTTTGGATGAGTTGTTATA+TGG - chr5_1:48985980-48985999 None:intergenic 25.0%
! ATATAACAACTCATCCAAAA+AGG + chr5_1:48985979-48985998 Msa0734660:intron 25.0%
!!! TATGTTGACTTTTGTTTAGA+TGG + chr5_1:48986199-48986218 Msa0734660:intron 25.0%
! TTATTCGATCTATTCAATTG+TGG + chr5_1:48986282-48986301 Msa0734660:intron 25.0%
!!! TTTGGTGATATTTTTGATGT+AGG + chr5_1:48986831-48986850 Msa0734660:intron 25.0%
!!! TTGGTGATATTTTTGATGTA+GGG + chr5_1:48986832-48986851 Msa0734660:intron 25.0%
! AAAAAATACAAGTAGAGGAT+TGG - chr5_1:48986933-48986952 None:intergenic 25.0%
! ATATTCTCTTCCAATTCTTT+AGG - chr5_1:48987012-48987031 None:intergenic 25.0%
! AAGAGAGAAAATTACAATGA+TGG + chr5_1:48985700-48985719 Msa0734660:CDS 25.0%
!! TTTGAATTATCAAGAGGTTT+TGG + chr5_1:48985768-48985787 Msa0734660:CDS 25.0%
! TGGATAATGAATACTAACAT+AGG - chr5_1:48985866-48985885 None:intergenic 25.0%
!! TTTTTGGATGAGTTGTTATA+TGG - chr5_1:48985980-48985999 None:intergenic 25.0%
! ATATAACAACTCATCCAAAA+AGG + chr5_1:48985979-48985998 Msa0734660:intron 25.0%
!!! TATGTTGACTTTTGTTTAGA+TGG + chr5_1:48986199-48986218 Msa0734660:intron 25.0%
! TTATTCGATCTATTCAATTG+TGG + chr5_1:48986282-48986301 Msa0734660:intron 25.0%
!!! TTTGGTGATATTTTTGATGT+AGG + chr5_1:48986831-48986850 Msa0734660:intron 25.0%
!!! TTGGTGATATTTTTGATGTA+GGG + chr5_1:48986832-48986851 Msa0734660:intron 25.0%
! AAAAAATACAAGTAGAGGAT+TGG - chr5_1:48986933-48986952 None:intergenic 25.0%
! ATATTCTCTTCCAATTCTTT+AGG - chr5_1:48987012-48987031 None:intergenic 25.0%
ACTTCATGTTCTTCTTTCTT+TGG - chr5_1:48985424-48985443 None:intergenic 30.0%
!! TAAGATTTGTTGAAGTTTGG+TGG - chr5_1:48985469-48985488 None:intergenic 30.0%
!! GTGTAAGATTTGTTGAAGTT+TGG - chr5_1:48985472-48985491 None:intergenic 30.0%
! CTACTATTACAAGTGTTTTG+TGG - chr5_1:48985577-48985596 None:intergenic 30.0%
ATAGTAGTAATGAGCTTCAT+TGG + chr5_1:48985590-48985609 Msa0734660:CDS 30.0%
TAGTAGTAATGAGCTTCATT+GGG + chr5_1:48985591-48985610 Msa0734660:CDS 30.0%
!! TTGTTGTTATATGGCCTTTT+TGG - chr5_1:48985996-48986015 None:intergenic 30.0%
! GCAAGAATAGTCATCAATTT+TGG - chr5_1:48986094-48986113 None:intergenic 30.0%
ATTACTTAATTGACACCAAC+AGG - chr5_1:48986180-48986199 None:intergenic 30.0%
TGATAAAAGACCAAGAATCA+AGG + chr5_1:48986716-48986735 Msa0734660:CDS 30.0%
ACTTCATGTTCTTCTTTCTT+TGG - chr5_1:48985424-48985443 None:intergenic 30.0%
!! TAAGATTTGTTGAAGTTTGG+TGG - chr5_1:48985469-48985488 None:intergenic 30.0%
!! GTGTAAGATTTGTTGAAGTT+TGG - chr5_1:48985472-48985491 None:intergenic 30.0%
! CTACTATTACAAGTGTTTTG+TGG - chr5_1:48985577-48985596 None:intergenic 30.0%
ATAGTAGTAATGAGCTTCAT+TGG + chr5_1:48985590-48985609 Msa0734660:CDS 30.0%
TAGTAGTAATGAGCTTCATT+GGG + chr5_1:48985591-48985610 Msa0734660:CDS 30.0%
!! TTGTTGTTATATGGCCTTTT+TGG - chr5_1:48985996-48986015 None:intergenic 30.0%
! GCAAGAATAGTCATCAATTT+TGG - chr5_1:48986094-48986113 None:intergenic 30.0%
ATTACTTAATTGACACCAAC+AGG - chr5_1:48986180-48986199 None:intergenic 30.0%
TGATAAAAGACCAAGAATCA+AGG + chr5_1:48986716-48986735 Msa0734660:CDS 30.0%
TTCATTGGGATATCATGGAA+TGG + chr5_1:48985605-48985624 Msa0734660:CDS 35.0%
TCATTGGGATATCATGGAAT+GGG + chr5_1:48985606-48985625 Msa0734660:CDS 35.0%
TCATCTTTCCCTTCATCAAA+GGG - chr5_1:48985640-48985659 None:intergenic 35.0%
! CGCATAAAGATTTTACCTGT+TGG + chr5_1:48986162-48986181 Msa0734660:intron 35.0%
GATAGGTAATCTTTGATGCT+TGG + chr5_1:48986335-48986354 Msa0734660:intron 35.0%
!! CAGCGTTTAATTTTCGAACT+TGG - chr5_1:48986698-48986717 None:intergenic 35.0%
! AAAAGTGTGACCTTGATTCT+TGG - chr5_1:48986729-48986748 None:intergenic 35.0%
!!! AGGATTGGCCTTAGATATTT+TGG - chr5_1:48986918-48986937 None:intergenic 35.0%
! CCAATTCTTTAGGAAGAGAA+GGG - chr5_1:48987002-48987021 None:intergenic 35.0%
! TCCAATTCTTTAGGAAGAGA+AGG - chr5_1:48987003-48987022 None:intergenic 35.0%
AAGAGATGAAGTGTATCTCA+TGG - chr5_1:48985395-48985414 None:intergenic 35.0%
TTCATTGGGATATCATGGAA+TGG + chr5_1:48985605-48985624 Msa0734660:CDS 35.0%
TCATTGGGATATCATGGAAT+GGG + chr5_1:48985606-48985625 Msa0734660:CDS 35.0%
TCATCTTTCCCTTCATCAAA+GGG - chr5_1:48985640-48985659 None:intergenic 35.0%
! CGCATAAAGATTTTACCTGT+TGG + chr5_1:48986162-48986181 Msa0734660:intron 35.0%
GATAGGTAATCTTTGATGCT+TGG + chr5_1:48986335-48986354 Msa0734660:intron 35.0%
!! CAGCGTTTAATTTTCGAACT+TGG - chr5_1:48986698-48986717 None:intergenic 35.0%
! AAAAGTGTGACCTTGATTCT+TGG - chr5_1:48986729-48986748 None:intergenic 35.0%
!!! AGGATTGGCCTTAGATATTT+TGG - chr5_1:48986918-48986937 None:intergenic 35.0%
! CCAATTCTTTAGGAAGAGAA+GGG - chr5_1:48987002-48987021 None:intergenic 35.0%
! TCCAATTCTTTAGGAAGAGA+AGG - chr5_1:48987003-48987022 None:intergenic 35.0%
TGAGCTTCATTGGGATATCA+TGG + chr5_1:48985600-48985619 Msa0734660:CDS 40.0%
CATCTTTCCCTTCATCAAAG+GGG - chr5_1:48985639-48985658 None:intergenic 40.0%
CTCATCTTTCCCTTCATCAA+AGG - chr5_1:48985641-48985660 None:intergenic 40.0%
!! CAATGATGGTTTTTGGGAAG+TGG + chr5_1:48985714-48985733 Msa0734660:CDS 40.0%
AGTGGATGATGAAAAGAGTG+TGG + chr5_1:48985732-48985751 Msa0734660:CDS 40.0%
!!! ATCAAGAGGTTTTGGATGCA+TGG + chr5_1:48985776-48985795 Msa0734660:CDS 40.0%
! TCATTTTCCTCCTCCAATAG+TGG + chr5_1:48985838-48985857 Msa0734660:CDS 40.0%
ACTAACATAGGAGCCACTAT+TGG - chr5_1:48985854-48985873 None:intergenic 40.0%
AACTCTTGTTGATCGCTTTC+TGG + chr5_1:48986228-48986247 Msa0734660:intron 40.0%
GCTCTCTCTTCTTCCAATAT+TGG - chr5_1:48986603-48986622 None:intergenic 40.0%
GAAGAGAAGCAAGTGTTCTT+AGG + chr5_1:48986625-48986644 Msa0734660:CDS 40.0%
GAAGAGAAGGGCAAATTGAA+TGG - chr5_1:48986990-48987009 None:intergenic 40.0%
CCCTTCTCTTCCTAAAGAAT+TGG + chr5_1:48986999-48987018 Msa0734660:three_prime_UTR 40.0%
TGAGCTTCATTGGGATATCA+TGG + chr5_1:48985600-48985619 Msa0734660:CDS 40.0%
CATCTTTCCCTTCATCAAAG+GGG - chr5_1:48985639-48985658 None:intergenic 40.0%
CTCATCTTTCCCTTCATCAA+AGG - chr5_1:48985641-48985660 None:intergenic 40.0%
!! CAATGATGGTTTTTGGGAAG+TGG + chr5_1:48985714-48985733 Msa0734660:CDS 40.0%
AGTGGATGATGAAAAGAGTG+TGG + chr5_1:48985732-48985751 Msa0734660:CDS 40.0%
!!! ATCAAGAGGTTTTGGATGCA+TGG + chr5_1:48985776-48985795 Msa0734660:CDS 40.0%
! TCATTTTCCTCCTCCAATAG+TGG + chr5_1:48985838-48985857 Msa0734660:CDS 40.0%
ACTAACATAGGAGCCACTAT+TGG - chr5_1:48985854-48985873 None:intergenic 40.0%
AACTCTTGTTGATCGCTTTC+TGG + chr5_1:48986228-48986247 Msa0734660:intron 40.0%
GCTCTCTCTTCTTCCAATAT+TGG - chr5_1:48986603-48986622 None:intergenic 40.0%
GAAGAGAAGCAAGTGTTCTT+AGG + chr5_1:48986625-48986644 Msa0734660:CDS 40.0%
GAAGAGAAGGGCAAATTGAA+TGG - chr5_1:48986990-48987009 None:intergenic 40.0%
CCCTTCTCTTCCTAAAGAAT+TGG + chr5_1:48986999-48987018 Msa0734660:three_prime_UTR 40.0%
! GAAGTTTGGTGGTCTTTGAG+TGG - chr5_1:48985458-48985477 None:intergenic 45.0%
TTGGGATATCATGGAATGGG+AGG + chr5_1:48985609-48985628 Msa0734660:CDS 45.0%
TGGGATATCATGGAATGGGA+GGG + chr5_1:48985610-48985629 Msa0734660:CDS 45.0%
AGGGATTCCCCTTTGATGAA+GGG + chr5_1:48985629-48985648 Msa0734660:CDS 45.0%
AACATAGGAGCCACTATTGG+AGG - chr5_1:48985851-48985870 None:intergenic 45.0%
!! GATGGGAGAAGTGCCAATAT+TGG + chr5_1:48986587-48986606 Msa0734660:intron 45.0%
CGCTTTGTGAAGAGACATTG+AGG + chr5_1:48986856-48986875 Msa0734660:CDS 45.0%
! GAAGTTTGGTGGTCTTTGAG+TGG - chr5_1:48985458-48985477 None:intergenic 45.0%
TTGGGATATCATGGAATGGG+AGG + chr5_1:48985609-48985628 Msa0734660:CDS 45.0%
TGGGATATCATGGAATGGGA+GGG + chr5_1:48985610-48985629 Msa0734660:CDS 45.0%
AGGGATTCCCCTTTGATGAA+GGG + chr5_1:48985629-48985648 Msa0734660:CDS 45.0%
AACATAGGAGCCACTATTGG+AGG - chr5_1:48985851-48985870 None:intergenic 45.0%
!! GATGGGAGAAGTGCCAATAT+TGG + chr5_1:48986587-48986606 Msa0734660:intron 45.0%
CGCTTTGTGAAGAGACATTG+AGG + chr5_1:48986856-48986875 Msa0734660:CDS 45.0%
!! TAAACAAAAAATAAATTATA+AGG - chr5_1:48986567-48986586 None:intergenic 5.0%
!!! TATATTTTTATTTTTTTGAA+AGG - chr5_1:48987064-48987083 None:intergenic 5.0%
!! TAAACAAAAAATAAATTATA+AGG - chr5_1:48986567-48986586 None:intergenic 5.0%
!!! TATATTTTTATTTTTTTGAA+AGG - chr5_1:48987064-48987083 None:intergenic 5.0%
GGTCTTTGAGTGGTAGCTTC+TGG - chr5_1:48985448-48985467 None:intergenic 50.0%
GAGGGATTCCCCTTTGATGA+AGG + chr5_1:48985628-48985647 Msa0734660:CDS 50.0%
CATTAGCCCAAAGAGAGCCA+CGG - chr5_1:48985807-48985826 None:intergenic 50.0%
ATAGGAGCCACTATTGGAGG+AGG - chr5_1:48985848-48985867 None:intergenic 50.0%
GGTCTTTGAGTGGTAGCTTC+TGG - chr5_1:48985448-48985467 None:intergenic 50.0%
GAGGGATTCCCCTTTGATGA+AGG + chr5_1:48985628-48985647 Msa0734660:CDS 50.0%
CATTAGCCCAAAGAGAGCCA+CGG - chr5_1:48985807-48985826 None:intergenic 50.0%
ATAGGAGCCACTATTGGAGG+AGG - chr5_1:48985848-48985867 None:intergenic 50.0%
TTGGATGCATGGTCTGACCG+TGG + chr5_1:48985787-48985806 Msa0734660:CDS 55.0%
GTCTGACCGTGGCTCTCTTT+GGG + chr5_1:48985798-48985817 Msa0734660:CDS 55.0%
TTGGATGCATGGTCTGACCG+TGG + chr5_1:48985787-48985806 Msa0734660:CDS 55.0%
GTCTGACCGTGGCTCTCTTT+GGG + chr5_1:48985798-48985817 Msa0734660:CDS 55.0%
GGTCTGACCGTGGCTCTCTT+TGG + chr5_1:48985797-48985816 Msa0734660:CDS 60.0%
GGTCTGACCGTGGCTCTCTT+TGG + chr5_1:48985797-48985816 Msa0734660:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 48985394 48987091 48985394 ID=Msa0734660;Name=Msa0734660
chr5_1 mRNA 48985394 48987091 48985394 ID=Msa0734660-mRNA-1;Parent=Msa0734660;Name=Msa0734660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|1|0.5|0.33|3|215|215
chr5_1 exon 48985394 48985867 48985394 ID=Msa0734660-mRNA-1:exon:13971;Parent=Msa0734660-mRNA-1
chr5_1 exon 48986588 48986737 48986588 ID=Msa0734660-mRNA-1:exon:13972;Parent=Msa0734660-mRNA-1
chr5_1 exon 48986853 48987091 48986853 ID=Msa0734660-mRNA-1:exon:13973;Parent=Msa0734660-mRNA-1
chr5_1 CDS 48985394 48985867 48985394 ID=Msa0734660-mRNA-1:cds;Parent=Msa0734660-mRNA-1
chr5_1 CDS 48986588 48986737 48986588 ID=Msa0734660-mRNA-1:cds;Parent=Msa0734660-mRNA-1
chr5_1 CDS 48986853 48986876 48986853 ID=Msa0734660-mRNA-1:cds;Parent=Msa0734660-mRNA-1
chr5_1 three_prime_UTR 48986877 48987091 48986877 ID=Msa0734660-mRNA-1:three_prime_utr;Parent=Msa0734660-mRNA-1
Gene Sequence

>Msa0734660

ATGAGATACACTTCATCTCTTAGAAGTCCAAAGAAAGAAGAACATGAAGTACCAGAAGCTACCACTCAAAGACCACCAAACTTCAACAAATCTTACACTAATGAAGATTTCTATCTTTTCGACGAACTCGAAGAGTACTTGAACATTGAAGAAGAAGAAGAAGAACAAAAGTTATCATCACCACAAAACACTTGTAATAGTAGTAATGAGCTTCATTGGGATATCATGGAATGGGAGGGATTCCCCTTTGATGAAGGGAAAGATGAGAACATAAGCAAATGCAATTATGAAGAGAAGAAAATAATAAAGAGAGAAAATTACAATGATGGTTTTTGGGAAGTGGATGATGAAAAGAGTGTGGCTTTGAATTTGAATTTGAATTATCAAGAGGTTTTGGATGCATGGTCTGACCGTGGCTCTCTTTGGGCTAATGATTGTTCTCTTTCATTTTCCTCCTCCAATAGTGGCTCCTATATGGGAGAAGTGCCAATATTGGAAGAAGAGAGAGCAAGAAGAGAAGCAAGTGTTCTTAGGTATAAAGAAAAACGTCAGAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGAAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACATTGA

Protein sequence

>Msa0734660

MRYTSSLRSPKKEEHEVPEATTQRPPNFNKSYTNEDFYLFDELEEYLNIEEEEEEQKLSSPQNTCNSSNELHWDIMEWEGFPFDEGKDENISKCNYEEKKIIKRENYNDGFWEVDDEKSVALNLNLNYQEVLDAWSDRGSLWANDCSLSFSSSNSGSYMGEVPILEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH*