AlfalfaGEDB | Msa0734660

M. sativa cultivar zhongmu-4 / Msa0734660

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734660	XP_003615824.1	95.392	217	8	1	1	215	1	217	5.35e-143	407

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734660	sp\|Q9LU68\|CIA2_ARATH	53.846	91	40	2	124	214	337	425	9.36e-22	95.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734660	B7FH76	95.392	217	8	1	1	215	1	217	2.56e-143	407

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TFs/TRs:

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Gene ID	Type	Classification
Msa0734660	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa0734660	0.812124	4.963630e-51	-8.615850e-47
Msa0004360	Msa0734660	0.800857	1.183541e-48	-8.615850e-47
Msa0012040	Msa0734660	0.827032	1.956998e-54	-8.615850e-47
Msa0012240	Msa0734660	0.800101	1.687691e-48	-8.615850e-47
Msa0013050	Msa0734660	-0.837096	6.358701e-57	-8.615850e-47
Msa0020630	Msa0734660	0.829043	6.417078e-55	-8.615850e-47
Msa0022640	Msa0734660	0.811827	5.762499e-51	-8.615850e-47
Msa0027540	Msa0734660	0.820232	7.648598e-53	-8.615850e-47
Msa0030380	Msa0734660	0.877263	7.231019e-69	-8.615850e-47
Msa0030430	Msa0734660	0.817741	2.816998e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734660	MtrunA17_Chr5g0431351	95.392	217	8	1	1	215	1	217	4.92e-147	407
Msa0734660	MtrunA17_Chr4g0071811	54.348	92	38	2	127	214	293	384	1.22e-22	94.4
Msa0734660	MtrunA17_Chr7g0226451	39.850	133	41	3	121	214	219	351	2.01e-20	87.8
Msa0734660	MtrunA17_Chr1g0209861	44.144	111	42	3	122	214	316	424	1.89e-19	85.9
Msa0734660	MtrunA17_Chr8g0390971	41.727	139	53	4	92	214	274	400	4.74e-18	81.6
Msa0734660	MtrunA17_Chr1g0150471	49.275	69	32	1	146	214	232	297	2.46e-13	67.8
Msa0734660	MtrunA17_Chr3g0136701	67.442	43	14	0	172	214	232	274	2.02e-11	62.0
Msa0734660	MtrunA17_Chr4g0072871	67.442	43	14	0	172	214	298	340	4.26e-11	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734660	AT1G07050.1	63.964	111	29	4	110	214	88	193	3.29e-38	131
Msa0734660	AT1G07050.2	62.857	105	28	5	110	208	88	187	3.02e-33	119
Msa0734660	AT5G14370.1	53.211	109	36	3	121	214	228	336	3.31e-28	108
Msa0734660	AT4G25990.1	53.922	102	39	3	117	214	286	383	2.04e-23	97.1
Msa0734660	AT5G57180.2	53.846	91	40	2	124	214	337	425	9.51e-23	95.5
Msa0734660	AT1G73870.1	42.553	141	57	5	92	214	253	387	8.26e-21	89.7
Msa0734660	AT4G25990.2	47.009	117	39	4	117	214	286	398	1.01e-19	86.7
Msa0734660	AT4G25990.3	52.083	96	38	3	117	208	286	377	2.53e-19	85.5
Msa0734660	AT1G49130.1	52.747	91	34	3	126	214	237	320	3.31e-19	84.7
Msa0734660	AT1G49130.2	51.648	91	35	2	126	214	230	313	3.95e-19	84.3

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Find 41 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTGACCTTGATTCT+TGG	0.281388	5_1:-48986726	None:intergenic
AACATAGGAGCCACTATTGG+AGG	0.541652	5_1:-48985848	None:intergenic
AAGAGAGAAAATTACAATGA+TGG	0.429279	5_1:+48985700	Msa0734660:CDS
AATATCTTCCAAAATATCTA+AGG	0.342626	5_1:+48986907	Msa0734660:three_prime_UTR
ACTAACATAGGAGCCACTAT+TGG	0.497136	5_1:-48985851	None:intergenic
ACTTCATGTTCTTCTTTCTT+TGG	0.183818	5_1:-48985421	None:intergenic
AGGATTGGCCTTAGATATTT+TGG	0.178831	5_1:-48986915	None:intergenic
AGGGATTCCCCTTTGATGAA+GGG	0.549524	5_1:+48985629	Msa0734660:CDS
AGTGGATGATGAAAAGAGTG+TGG	0.678709	5_1:+48985732	Msa0734660:CDS
ATAGGAGCCACTATTGGAGG+AGG	0.606351	5_1:-48985845	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCATGTTCTTCTTTCTT+TGG	-	chr5_1:48985424-48985443	None:intergenic	30.0%
ATAGTAGTAATGAGCTTCAT+TGG	+	chr5_1:48985590-48985609	Msa0734660:CDS	30.0%
TAGTAGTAATGAGCTTCATT+GGG	+	chr5_1:48985591-48985610	Msa0734660:CDS	30.0%
ATTACTTAATTGACACCAAC+AGG	-	chr5_1:48986180-48986199	None:intergenic	30.0%
TGATAAAAGACCAAGAATCA+AGG	+	chr5_1:48986716-48986735	Msa0734660:CDS	30.0%
ACTTCATGTTCTTCTTTCTT+TGG	-	chr5_1:48985424-48985443	None:intergenic	30.0%
ATAGTAGTAATGAGCTTCAT+TGG	+	chr5_1:48985590-48985609	Msa0734660:CDS	30.0%
TAGTAGTAATGAGCTTCATT+GGG	+	chr5_1:48985591-48985610	Msa0734660:CDS	30.0%
ATTACTTAATTGACACCAAC+AGG	-	chr5_1:48986180-48986199	None:intergenic	30.0%
TGATAAAAGACCAAGAATCA+AGG	+	chr5_1:48986716-48986735	Msa0734660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	48985394	48987091	48985394	ID=Msa0734660;Name=Msa0734660
chr5_1	mRNA	48985394	48987091	48985394	ID=Msa0734660-mRNA-1;Parent=Msa0734660;Name=Msa0734660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0.5\|0.33\|1\|0.5\|0.33\|3\|215\|215
chr5_1	exon	48985394	48985867	48985394	ID=Msa0734660-mRNA-1:exon:13971;Parent=Msa0734660-mRNA-1
chr5_1	exon	48986588	48986737	48986588	ID=Msa0734660-mRNA-1:exon:13972;Parent=Msa0734660-mRNA-1
chr5_1	exon	48986853	48987091	48986853	ID=Msa0734660-mRNA-1:exon:13973;Parent=Msa0734660-mRNA-1
chr5_1	CDS	48985394	48985867	48985394	ID=Msa0734660-mRNA-1:cds;Parent=Msa0734660-mRNA-1
chr5_1	CDS	48986588	48986737	48986588	ID=Msa0734660-mRNA-1:cds;Parent=Msa0734660-mRNA-1
chr5_1	CDS	48986853	48986876	48986853	ID=Msa0734660-mRNA-1:cds;Parent=Msa0734660-mRNA-1
chr5_1	three_prime_UTR	48986877	48987091	48986877	ID=Msa0734660-mRNA-1:three_prime_utr;Parent=Msa0734660-mRNA-1

Gene Sequence

>Msa0734660

ATGAGATACACTTCATCTCTTAGAAGTCCAAAGAAAGAAGAACATGAAGTACCAGAAGCTACCACTCAAAGACCACCAAACTTCAACAAATCTTACACTAATGAAGATTTCTATCTTTTCGACGAACTCGAAGAGTACTTGAACATTGAAGAAGAAGAAGAAGAACAAAAGTTATCATCACCACAAAACACTTGTAATAGTAGTAATGAGCTTCATTGGGATATCATGGAATGGGAGGGATTCCCCTTTGATGAAGGGAAAGATGAGAACATAAGCAAATGCAATTATGAAGAGAAGAAAATAATAAAGAGAGAAAATTACAATGATGGTTTTTGGGAAGTGGATGATGAAAAGAGTGTGGCTTTGAATTTGAATTTGAATTATCAAGAGGTTTTGGATGCATGGTCTGACCGTGGCTCTCTTTGGGCTAATGATTGTTCTCTTTCATTTTCCTCCTCCAATAGTGGCTCCTATATGGGAGAAGTGCCAATATTGGAAGAAGAGAGAGCAAGAAGAGAAGCAAGTGTTCTTAGGTATAAAGAAAAACGTCAGAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGAAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACATTGA

Protein sequence

>Msa0734660

MRYTSSLRSPKKEEHEVPEATTQRPPNFNKSYTNEDFYLFDELEEYLNIEEEEEEQKLSSPQNTCNSSNELHWDIMEWEGFPFDEGKDENISKCNYEEKKIIKRENYNDGFWEVDDEKSVALNLNLNYQEVLDAWSDRGSLWANDCSLSFSSSNSGSYMGEVPILEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH*