AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945230 MtrunA17_Chr4g0046401 91.086 718 35 1 1 689 1 718 0.0 1332
Msa0945230 MtrunA17_Chr1g0186381 60.139 720 254 5 5 694 6 722 0.0 904
Msa0945230 MtrunA17_Chr2g0307191 43.902 697 337 11 20 683 15 690 0.0 594
Msa0945230 MtrunA17_Chr3g0095791 42.529 696 347 9 20 683 15 689 0.0 587
Msa0945230 MtrunA17_Chr2g0298581 41.404 698 355 8 20 684 15 691 0.0 582
Msa0945230 MtrunA17_Chr3g0077511 41.117 698 357 7 20 683 15 692 0.0 575
Msa0945230 MtrunA17_Chr3g0102541 35.766 685 384 10 59 698 52 725 1.28e-141 432
Msa0945230 MtrunA17_Chr3g0102531 35.389 681 388 9 59 698 52 721 7.31e-141 429
Msa0945230 MtrunA17_Chr3g0102551 35.302 728 402 16 21 698 21 729 7.41e-139 425
Msa0945230 MtrunA17_Chr4g0073711 31.365 762 405 16 24 683 251 996 8.72e-116 372
Msa0945230 MtrunA17_Chr2g0284211 31.532 777 411 16 15 683 172 935 4.56e-115 369
Msa0945230 MtrunA17_Chr8g0379241 31.552 786 415 19 6 683 177 947 4.22e-114 367
Msa0945230 MtrunA17_Chr8g0364641 31.447 760 400 18 19 683 206 939 1.26e-113 365
Msa0945230 MtrunA17_Chr1g0183381 30.880 761 410 18 24 686 123 865 8.31e-110 353
Msa0945230 MtrunA17_Chr2g0322361 31.721 703 407 18 40 684 37 724 1.64e-107 343
Msa0945230 MtrunA17_Chr2g0322371 32.507 686 389 18 57 684 45 714 3.74e-106 339
Msa0945230 MtrunA17_Chr2g0322351 32.810 637 367 12 57 645 47 670 6.37e-101 325
Msa0945230 MtrunA17_Chr4g0025201 30.312 673 408 15 57 677 47 710 1.10e-98 320
Msa0945230 MtrunA17_Chr5g0410641 28.469 836 421 20 14 683 258 1082 6.02e-92 309
Msa0945230 MtrunA17_Chr4g0039801 28.485 825 415 18 24 683 289 1103 5.26e-91 307
Msa0945230 MtrunA17_Chr7g0269741 27.976 840 422 19 15 683 304 1131 3.16e-89 302
Msa0945230 MtrunA17_Chr1g0165411 27.785 817 420 19 24 683 261 1064 4.48e-88 298
Msa0945230 MtrunA17_Chr1g0165421 27.885 832 414 21 24 683 275 1092 5.86e-87 296
Msa0945230 MtrunA17_Chr2g0297351 26.723 827 427 22 24 686 175 986 3.27e-85 289
Msa0945230 MtrunA17_Chr8g0383701 36.387 382 210 7 24 382 289 660 5.86e-73 256
Msa0945230 MtrunA17_Chr8g0383701 31.778 343 190 8 379 683 718 1054 6.36e-43 167
Msa0945230 MtrunA17_Chr7g0267731 36.772 378 212 8 24 381 183 553 3.02e-72 253
Msa0945230 MtrunA17_Chr7g0267731 29.966 297 168 5 421 683 654 944 2.91e-35 143
Msa0945230 MtrunA17_Chr1g0201731 36.675 379 213 8 24 382 291 662 3.04e-71 251
Msa0945230 MtrunA17_Chr1g0201731 31.902 326 184 6 390 682 734 1054 3.69e-39 155
Msa0945230 MtrunA17_Chr3g0088821 38.123 341 190 4 59 379 300 639 9.95e-71 249
Msa0945230 MtrunA17_Chr3g0088821 29.358 327 194 5 390 683 714 1036 4.72e-38 152
Msa0945230 MtrunA17_Chr2g0296991 36.412 379 208 9 24 379 222 590 3.31e-70 248
Msa0945230 MtrunA17_Chr2g0296991 30.530 321 185 5 396 683 687 1002 8.27e-40 157
Msa0945230 MtrunA17_Chr8g0352231 37.609 343 193 4 59 381 300 641 1.13e-68 244
Msa0945230 MtrunA17_Chr8g0352231 30.218 321 187 5 396 683 720 1036 3.59e-39 155
Msa0945230 MtrunA17_Chr3g0137951 36.436 376 212 7 24 379 281 649 2.50e-67 240
Msa0945230 MtrunA17_Chr3g0137951 29.755 326 190 6 392 683 724 1044 3.88e-38 152
Msa0945230 MtrunA17_Chr7g0274751 33.137 510 241 14 59 470 141 648 3.51e-67 236
Msa0945230 MtrunA17_Chr3g0078671 35.356 379 218 7 24 382 238 609 3.60e-67 239
Msa0945230 MtrunA17_Chr3g0078671 28.116 345 208 8 376 683 666 1007 1.13e-38 154
Msa0945230 MtrunA17_Chr2g0322341 37.097 310 175 6 53 349 45 347 5.88e-64 216
Msa0945230 MtrunA17_Chr2g0307241 47.312 186 89 2 20 205 15 191 3.15e-58 196
Msa0945230 MtrunA17_Chr2g0322331 25.000 328 211 5 391 684 29 355 6.58e-21 95.5
Msa0945230 MtrunA17_Chr2g0307231 46.078 102 50 2 333 430 2 102 5.14e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945230 AT4G24000.1 37.083 720 382 15 10 688 11 700 1.28e-154 465
Msa0945230 AT4G24010.1 36.276 725 396 13 10 692 14 714 3.09e-152 460
Msa0945230 AT4G23990.1 36.791 723 395 11 6 688 29 729 8.73e-150 454
Msa0945230 AT1G55850.1 33.921 681 386 10 57 698 64 719 1.33e-129 400
Msa0945230 AT5G17420.1 31.868 728 383 13 59 683 267 984 8.87e-117 375
Msa0945230 AT5G64740.1 31.202 782 401 18 24 683 276 1042 2.30e-113 367
Msa0945230 AT5G09870.1 30.680 779 406 19 24 683 264 1027 8.48e-110 357
Msa0945230 AT2G25540.1 30.288 799 426 19 3 683 233 1018 2.50e-109 356
Msa0945230 AT4G24000.2 36.415 530 277 10 196 688 2 508 4.64e-109 341
Msa0945230 AT4G32410.1 30.670 776 410 18 24 683 275 1038 9.02e-109 355
Msa0945230 AT4G18780.1 31.443 776 398 17 24 683 184 941 1.37e-108 352
Msa0945230 AT4G23990.2 36.415 530 284 8 196 688 2 515 5.19e-104 328
Msa0945230 AT2G32540.1 29.630 702 398 17 59 684 51 732 6.68e-104 334
Msa0945230 AT2G32530.1 31.792 692 369 24 34 646 30 697 1.76e-103 333
Msa0945230 AT4G15320.3 30.683 717 398 20 37 677 36 729 7.45e-102 329
Msa0945230 AT4G15320.5 30.683 717 398 20 37 677 36 729 9.91e-102 328
Msa0945230 AT4G15320.4 30.737 706 390 20 59 677 51 744 5.51e-100 324
Msa0945230 AT2G32620.1 30.226 708 388 22 59 684 51 734 9.43e-98 318
Msa0945230 AT4G15290.1 31.259 659 367 19 59 647 51 693 1.29e-95 312
Msa0945230 AT2G32610.1 30.827 665 354 20 59 642 51 690 9.03e-94 307
Msa0945230 AT2G32620.2 35.388 503 267 14 59 518 51 538 1.05e-92 298
Msa0945230 AT2G32620.3 34.087 531 275 15 59 529 51 566 4.74e-92 299
Msa0945230 AT4G38190.1 28.218 808 420 18 24 683 272 1067 2.51e-91 308
Msa0945230 AT1G32180.1 27.929 845 419 22 15 683 113 943 1.82e-89 301
Msa0945230 AT1G32180.2 27.929 845 419 22 15 683 113 943 1.82e-89 301
Msa0945230 AT1G02730.1 27.896 846 408 22 24 686 318 1144 7.47e-88 299
Msa0945230 AT2G33100.2 27.108 830 422 23 24 683 183 999 1.00e-87 297
Msa0945230 AT2G33100.1 27.108 830 422 23 24 683 183 999 1.00e-87 297
Msa0945230 AT4G15320.2 30.539 668 326 20 37 602 36 667 7.94e-87 290
Msa0945230 AT5G16910.1 27.683 820 423 20 24 683 297 1106 3.59e-86 294
Msa0945230 AT2G32620.4 29.607 662 361 21 104 684 1 638 8.40e-86 284
Msa0945230 AT3G03050.1 26.488 823 432 17 24 683 294 1106 1.13e-84 290
Msa0945230 AT4G15320.1 29.197 685 319 21 59 602 51 710 7.22e-80 271
Msa0945230 AT4G39350.1 36.649 382 209 7 24 382 277 648 9.72e-71 250
Msa0945230 AT4G39350.1 31.498 327 186 6 390 683 720 1041 3.82e-36 147
Msa0945230 AT2G21770.1 36.111 396 219 8 8 382 271 653 1.72e-70 249
Msa0945230 AT2G21770.1 31.157 337 194 6 380 683 714 1045 1.36e-40 160
Msa0945230 AT5G05170.1 36.436 376 212 5 24 379 259 627 4.21e-70 248
Msa0945230 AT5G05170.1 29.358 327 194 5 390 683 701 1023 5.48e-38 152
Msa0945230 AT5G44030.2 36.148 379 209 9 24 379 244 612 4.77e-69 245
Msa0945230 AT5G44030.2 32.298 322 180 7 396 683 719 1036 9.45e-40 158
Msa0945230 AT5G44030.1 36.148 379 209 9 24 379 215 583 5.78e-69 244
Msa0945230 AT5G44030.1 32.298 322 180 7 396 683 690 1007 1.22e-39 157
Msa0945230 AT5G44030.3 39.016 305 166 6 91 379 4 304 8.06e-65 229
Msa0945230 AT5G44030.3 32.298 322 180 7 396 683 411 728 4.39e-40 158

Find 177 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAAAGTGGGTTCCTTAAT+TGG 0.141463 6_3:-23961217 None:intergenic
CTCTCCTTCATTTGGTTCCT+TGG 0.172567 6_3:+23961091 Msa0945230:CDS
CTCTTTATTGTTTGCCCCTT+TGG 0.176106 6_3:+23963153 Msa0945230:CDS
GGAAGTCGTATTTATCATTT+TGG 0.178591 6_3:-23963590 None:intergenic
CTGCAACTTCGAGAATATTT+TGG 0.180704 6_3:+23962648 Msa0945230:CDS
TAGGCTTCTTGTTCTATTAC+AGG 0.204037 6_3:+23960987 Msa0945230:CDS
TCAAGAGATGGTATTACTTT+TGG 0.207697 6_3:+23961654 Msa0945230:CDS
GATATGAAACTGGCACTAAA+TGG 0.224428 6_3:+23962775 Msa0945230:CDS
ATGGCATATCGAGCTGAATT+TGG 0.256825 6_3:-23962200 None:intergenic
CTGGAGGAACACTACATAAA+TGG 0.257412 6_3:+23963421 Msa0945230:CDS
TGATGATAAGCAACAACTTT+TGG 0.260318 6_3:-23960931 None:intergenic
CCTCAGTTCTGTCTACTAAA+TGG 0.263774 6_3:+23963191 Msa0945230:CDS
TCATCCTCTGGCAATCTCTC+TGG 0.273425 6_3:-23961154 None:intergenic
TTACTAGAAGTCTTCTTAAC+TGG 0.287101 6_3:+23963402 Msa0945230:CDS
TGGAGTTTATAGAGTGATAT+TGG 0.310644 6_3:+23963680 Msa0945230:CDS
TTCTCCCTACATCCTAGTTC+TGG 0.315742 6_3:+23962154 Msa0945230:CDS
TCATCCTCTGCTTTATTAGT+AGG 0.327364 6_3:-23963549 None:intergenic
GCAAGGGATGGACGGGCTTA+AGG 0.330461 6_3:+23962421 Msa0945230:CDS
AAATCATTCTCTCCTTCATT+TGG 0.335597 6_3:+23961083 Msa0945230:CDS
GGCAGAGAAGCAAAAGATTA+AGG 0.344678 6_3:+23961480 Msa0945230:CDS
TTGCAATCTATATGGTTGTT+TGG 0.355256 6_3:+23963482 Msa0945230:CDS
TCAACTACTTGCAATCTATA+TGG 0.355613 6_3:+23963474 Msa0945230:CDS
GGATCAATGAGCAGAGAATC+TGG 0.363474 6_3:+23963442 Msa0945230:CDS
ATGCACTGCAGATCCAATTA+AGG 0.368192 6_3:+23961204 Msa0945230:CDS
GACAAGGAGGATGATATCTT+TGG 0.372812 6_3:-23962239 None:intergenic
CAAAGCAGAAAAGTAGGCCT+TGG 0.385342 6_3:-23961416 None:intergenic
GCTCGAAGAACCTCACTTGT+TGG 0.395209 6_3:+23962743 Msa0945230:CDS
ATATGAAACTGGCACTAAAT+GGG 0.398753 6_3:+23962776 Msa0945230:CDS
ATCACCAGCCCTTCAATGAT+AGG 0.399749 6_3:-23963768 None:intergenic
GAACTGCAAGGTTATCATCT+AGG 0.402438 6_3:+23960859 Msa0945230:five_prime_UTR
CTTGGGAGTTTGCAAGGTGG+TGG 0.404254 6_3:+23961353 Msa0945230:CDS
AATGTGCACCATTATATTAG+AGG 0.404986 6_3:+23964288 Msa0945230:CDS
AGTTGTTGCTTATCATCAAT+AGG 0.407981 6_3:+23960936 Msa0945230:CDS
GGGCAACCTGTATGAACATT+TGG 0.409650 6_3:-23963716 None:intergenic
CCAAGGAACTGTGGCCTAGA+TGG 0.410757 6_3:-23962972 None:intergenic
CAAGGGATGGACGGGCTTAA+GGG 0.413602 6_3:+23962422 Msa0945230:CDS
GCATTGTAACGGATGGAATT+CGG 0.422318 6_3:+23962938 Msa0945230:CDS
GCTTCTTGTAGATATGAAAC+TGG 0.425990 6_3:+23962765 Msa0945230:CDS
CATGTGTATCTTTCAGATGA+TGG 0.428039 6_3:+23961295 Msa0945230:CDS
CTGTGTTACCTTAGGATACA+AGG 0.430250 6_3:-23963219 None:intergenic
GATGCTTTACTGAAGAAAGT+TGG 0.432109 6_3:+23963504 Msa0945230:CDS
GGTTATCATCTAGGGAGAAA+TGG 0.433802 6_3:+23960868 Msa0945230:exon
AAAGCAGAAAAGTAGGCCTT+GGG 0.434065 6_3:-23961415 None:intergenic
GAGTGATATTGGTGGGTGAT+TGG 0.434933 6_3:+23963691 Msa0945230:CDS
AGGAAAGGCCTCTAATATAA+TGG 0.441337 6_3:-23964296 None:intergenic
TGAGGGCTCCAGCTTTGAAA+TGG 0.444970 6_3:-23961999 None:intergenic
CATCCTCTGGCAATCTCTCT+GGG 0.449447 6_3:-23961153 None:intergenic
TCATTGAAGGGCTGGTGATA+AGG 0.449469 6_3:+23963772 Msa0945230:CDS
TACTAATCCAAGGCACTAGA+TGG 0.455870 6_3:+23963021 Msa0945230:CDS
TCCTTGGCCAAGCTTATCGC+TGG 0.456621 6_3:+23961107 Msa0945230:CDS
TCGAGCAATGTATTCCGTCC+TGG 0.457971 6_3:-23962726 None:intergenic
ATAAACTACCCTATCATTGA+AGG 0.469163 6_3:+23963759 Msa0945230:CDS
CTCCTTCATTCCATGGCTCT+AGG 0.469797 6_3:+23960968 Msa0945230:CDS
TGGGAAGACATAACGTGAAA+CGG 0.477193 6_3:-23961134 None:intergenic
AGGCTTCTTGTTCTATTACA+GGG 0.479759 6_3:+23960988 Msa0945230:CDS
CTACCCTATCATTGAAGGGC+TGG 0.482472 6_3:+23963764 Msa0945230:CDS
CAATTTGCAGAGAAAGTATG+AGG 0.482474 6_3:+23961587 Msa0945230:intron
AGTCCCCACCATTTCAAAGC+TGG 0.483676 6_3:+23961991 Msa0945230:CDS
GGGAAGACATAACGTGAAAC+GGG 0.483928 6_3:-23961133 None:intergenic
GGCTCCAGCTTTGAAATGGT+GGG 0.486191 6_3:-23961995 None:intergenic
AGTGATATTGGTGGGTGATT+GGG 0.486626 6_3:+23963692 Msa0945230:CDS
GCAGGGAGCTTGTCATCCTC+TGG 0.486915 6_3:-23961166 None:intergenic
AGTGTTCATCACTTCTAAAG+TGG 0.487025 6_3:-23961230 None:intergenic
CCATCTAGGCCACAGTTCCT+TGG 0.487196 6_3:+23962972 Msa0945230:CDS
ACACATGCTCCTTCATTCCA+TGG 0.492247 6_3:+23960961 Msa0945230:CDS
CGAGCAATGTATTCCGTCCT+GGG 0.494664 6_3:-23962725 None:intergenic
GTATGGTGTGAGGAAGGCTT+GGG 0.495077 6_3:+23961336 Msa0945230:CDS
TATTCTGTACCTTCTGCAGA+AGG 0.499017 6_3:-23961380 None:intergenic
TTGTAATGATAAAACTTGCA+AGG 0.499402 6_3:-23963737 None:intergenic
GAAGGTACAGAATAAAGAAC+AGG 0.500742 6_3:+23961389 Msa0945230:CDS
TGTATGGTGTGAGGAAGGCT+TGG 0.500918 6_3:+23961335 Msa0945230:CDS
CAGAGTACCATCTAGTGCCT+TGG 0.501479 6_3:-23963028 None:intergenic
CAAGGAGCCATGGTAACAAA+TGG 0.502268 6_3:-23961048 None:intergenic
TTGGGACCAAATGTTCATAC+AGG 0.504326 6_3:+23963710 Msa0945230:CDS
CAAAGGGGCAAACAATAAAG+AGG 0.504519 6_3:-23963152 None:intergenic
AGCCTAGAGCCATGGAATGA+AGG 0.506111 6_3:-23960970 None:intergenic
GGATTTATCTTGCATTGTAA+CGG 0.506211 6_3:+23962927 Msa0945230:CDS
GGTGGCTTCCCTTCTGCAGA+AGG 0.510610 6_3:+23961371 Msa0945230:CDS
AACTGCAAGGTTATCATCTA+GGG 0.511603 6_3:+23960860 Msa0945230:five_prime_UTR
TTATCTTGCATTGTAACGGA+TGG 0.511997 6_3:+23962931 Msa0945230:CDS
TGCCAGGAGTAGTGTTTACA+TGG 0.512757 6_3:+23961459 Msa0945230:CDS
GATGGTGGCAAAACACCAAA+GGG 0.515466 6_3:-23963168 None:intergenic
TGCCATGTAAACACTACTCC+TGG 0.515527 6_3:-23961461 None:intergenic
GTAGTCGAAGATTTCCTGAC+TGG 0.518872 6_3:+23962906 Msa0945230:CDS
ACAATCCAGAACTAGGATGT+AGG 0.519220 6_3:-23962159 None:intergenic
CTTAAGGGACCTGTATTGTC+AGG 0.520784 6_3:+23962437 Msa0945230:CDS
TACAATGGCAAGGGATGGAC+GGG 0.522235 6_3:+23962414 Msa0945230:CDS
AATGCAAGATAAATCCAGTC+AGG 0.527019 6_3:-23962920 None:intergenic
TGGAATACCCTTGTATCCTA+AGG 0.531703 6_3:+23963211 Msa0945230:CDS
TATTGAGAGGAAGAGTCCCT+TGG 0.531960 6_3:-23960898 None:intergenic
AAGCATGTACCTGACAATAC+AGG 0.534743 6_3:-23962446 None:intergenic
GAACAAGAAGCCTAGAGCCA+TGG 0.535046 6_3:-23960978 None:intergenic
TTGAACAACTTCAGCTACAA+TGG 0.536811 6_3:+23962399 Msa0945230:intron
TGTAATGATAAAACTTGCAA+GGG 0.538161 6_3:-23963736 None:intergenic
ATTGAGAGGAAGAGTCCCTT+GGG 0.539211 6_3:-23960897 None:intergenic
GGGCTCCAGCTTTGAAATGG+TGG 0.541590 6_3:-23961996 None:intergenic
CAAGGCACTAGATGGTACTC+TGG 0.543521 6_3:+23963029 Msa0945230:CDS
ACTCTCCAAAGCAGAAAAGT+AGG 0.544277 6_3:-23961422 None:intergenic
CAATCCAGAACTAGGATGTA+GGG 0.544829 6_3:-23962158 None:intergenic
ATGAAAAGGGTATCATTGTA+CGG 0.545021 6_3:+23962473 Msa0945230:CDS
CTCACACCATACAGAGTCAT+GGG 0.545146 6_3:-23961325 None:intergenic
ACATGTCACAATCCAGAACT+AGG 0.545632 6_3:-23962166 None:intergenic
GGAAGGCTTGGGAGTTTGCA+AGG 0.546262 6_3:+23961347 Msa0945230:CDS
TACGGAAATCAAGCGAATGA+AGG 0.548147 6_3:+23962491 Msa0945230:CDS
CGGGACGCCAGCGATAAGCT+TGG 0.548345 6_3:-23961114 None:intergenic
ATGTGTATCTTTCAGATGAT+GGG 0.551013 6_3:+23961296 Msa0945230:CDS
CTACAATGGCAAGGGATGGA+CGG 0.551068 6_3:+23962413 Msa0945230:CDS
AAATATGTTGATTGTGAGGA+GGG 0.553265 6_3:-23963646 None:intergenic
TCACCAGCCCTTCAATGATA+GGG 0.553988 6_3:-23963767 None:intergenic
CTCGAAACATAGACAAGTTG+TGG 0.554608 6_3:-23961952 None:intergenic
AGGATGATATCTTTGGATCA+AGG 0.554905 6_3:-23962232 None:intergenic
AATATTCTCGAAGTTGCAGC+AGG 0.557617 6_3:-23962644 None:intergenic
CATATGAACACATCAACAGC+AGG 0.558578 6_3:-23961184 None:intergenic
ATTGTGAGGAGGGCAAGCAT+TGG 0.559251 6_3:-23963636 None:intergenic
CTAGAAGTCTTCTTAACTGG+AGG 0.559844 6_3:+23963405 Msa0945230:CDS
GGATGGTGGCAAAACACCAA+AGG 0.560347 6_3:-23963169 None:intergenic
ATGGCCGTACAAGGACATTG+AGG 0.561723 6_3:-23962017 None:intergenic
TTGAATGATGTACTAATCCA+AGG 0.561797 6_3:+23963011 Msa0945230:CDS
GACTCTGTATGGTGTGAGGA+AGG 0.567745 6_3:+23961330 Msa0945230:CDS
TGGCCGTACAAGGACATTGA+GGG 0.568429 6_3:-23962016 None:intergenic
AGATCATTCATCAGTCATTG+AGG 0.572393 6_3:+23961677 Msa0945230:CDS
CTAATGTTGTGAAATTTCTG+AGG 0.573072 6_3:-23962275 None:intergenic
TTGGCCAAGGAACCAAATGA+AGG 0.575063 6_3:-23961095 None:intergenic
CCTCACACCATACAGAGTCA+TGG 0.580155 6_3:-23961326 None:intergenic
AGTAATACCATCTCTTGAGA+AGG 0.580252 6_3:-23961649 None:intergenic
AGAAGATATCATTGATGATG+TGG 0.580750 6_3:+23961915 Msa0945230:CDS
GACAAAATATGTTGATTGTG+AGG 0.583493 6_3:-23963650 None:intergenic
GATGAGGCCTTCTCAAGAGA+TGG 0.584597 6_3:+23961642 Msa0945230:CDS
GTGTTCATCACTTCTAAAGT+GGG 0.585414 6_3:-23961229 None:intergenic
GCTCCAGCTTTGAAATGGTG+GGG 0.590422 6_3:-23961994 None:intergenic
GGGGAAGCCATTTGTTACCA+TGG 0.592373 6_3:+23961041 Msa0945230:CDS
AGAAACATCAAGGAACTGCA+AGG 0.593626 6_3:+23960847 None:intergenic
CAACTTCAGCTACAATGGCA+AGG 0.607668 6_3:+23962404 Msa0945230:intron
TGGACATGGCAGGTATTGAG+AGG 0.609066 6_3:-23960911 None:intergenic
GCCAGCGATAAGCTTGGCCA+AGG 0.610444 6_3:-23961108 None:intergenic
CAAGGGACGCATTTCACAGT+CGG 0.610991 6_3:+23963800 Msa0945230:CDS
AAAGGGGCAAACAATAAAGA+GGG 0.612126 6_3:-23963151 None:intergenic
TAGACAGAACTGAGGGATGG+TGG 0.613347 6_3:-23963183 None:intergenic
CATTTAGTAGACAGAACTGA+GGG 0.613491 6_3:-23963190 None:intergenic
TGAAGGGCTGGTGATAAGGA+AGG 0.613741 6_3:+23963776 Msa0945230:CDS
TACACATGAATCTTCTGTTG+AGG 0.617007 6_3:-23961280 None:intergenic
TCAGCTACAATGGCAAGGGA+TGG 0.617186 6_3:+23962409 Msa0945230:intron
AAAATATGTTGATTGTGAGG+AGG 0.617494 6_3:-23963647 None:intergenic
TAAACTACCCTATCATTGAA+GGG 0.618147 6_3:+23963760 Msa0945230:CDS
CTTACCTACTAATAAAGCAG+AGG 0.620480 6_3:+23963545 Msa0945230:CDS
TATGAAACTGGCACTAAATG+GGG 0.620691 6_3:+23962777 Msa0945230:CDS
ATTCTGTACCTTCTGCAGAA+GGG 0.622468 6_3:-23961379 None:intergenic
AGAGACATTCAGAAAAGATG+AGG 0.623555 6_3:+23961626 Msa0945230:CDS
TGTGTTACCTTAGGATACAA+GGG 0.624805 6_3:-23963218 None:intergenic
TTTCCAAGACCAAGAAAACA+GGG 0.624831 6_3:+23961021 Msa0945230:CDS
AACTTCAGCTACAATGGCAA+GGG 0.624923 6_3:+23962405 Msa0945230:intron
GTTTATAGAGTGATATTGGT+GGG 0.628743 6_3:+23963684 Msa0945230:CDS
AGTTTATAGAGTGATATTGG+TGG 0.632616 6_3:+23963683 Msa0945230:CDS
GGAGAAATGGAGGTAACCCA+AGG 0.634770 6_3:+23960881 Msa0945230:exon
AATAAAGAACAGGTGCCCCA+AGG 0.644833 6_3:+23961399 Msa0945230:CDS
TTGAGGATAATCTAGTGCCA+TGG 0.650068 6_3:-23961263 None:intergenic
TGGATCAAGGTGAAAACACA+TGG 0.655681 6_3:-23962219 None:intergenic
CTACAAGAAGCCAACAAGTG+AGG 0.656944 6_3:-23962753 None:intergenic
GCTGGTGATAAGGAAGGACA+AGG 0.659987 6_3:+23963782 Msa0945230:CDS
AATTTGTCGTAGCTGTACCA+AGG 0.662023 6_3:-23962989 None:intergenic
TAGTAGACAGAACTGAGGGA+TGG 0.662046 6_3:-23963186 None:intergenic
GAGAAATGGAGGTAACCCAA+GGG 0.667623 6_3:+23960882 Msa0945230:exon
AGGAAATTGAACAAAAGACA+AGG 0.668900 6_3:-23962255 None:intergenic
TATCATCTAGGGAGAAATGG+AGG 0.679190 6_3:+23960871 Msa0945230:exon
CCATTTAGTAGACAGAACTG+AGG 0.684834 6_3:-23963191 None:intergenic
CCATGACTCTGTATGGTGTG+AGG 0.687665 6_3:+23961326 Msa0945230:CDS
GTAGCTGTACCAAGGAACTG+TGG 0.688487 6_3:-23962981 None:intergenic
CTTCCCAGAGAGATTGCCAG+AGG 0.691580 6_3:+23961150 Msa0945230:CDS
TCACACCATACAGAGTCATG+GGG 0.693106 6_3:-23961324 None:intergenic
AGGCTTGGGAGTTTGCAAGG+TGG 0.698000 6_3:+23961350 Msa0945230:CDS
TTCCAAGACCAAGAAAACAG+GGG 0.702380 6_3:+23961022 Msa0945230:CDS
CTGGTGATAAGGAAGGACAA+GGG 0.707930 6_3:+23963783 Msa0945230:CDS
AAGCAGAAAAGTAGGCCTTG+GGG 0.718114 6_3:-23961414 None:intergenic
AAATTGAACAAAAGACAAGG+AGG 0.720972 6_3:-23962252 None:intergenic
ATATGAACACATCAACAGCA+GGG 0.739860 6_3:-23961183 None:intergenic
ATGGTGGCAAAACACCAAAG+GGG 0.740329 6_3:-23963167 None:intergenic
CACACCATACAGAGTCATGG+GGG 0.754927 6_3:-23961323 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAGATGATAAAATA+TGG - chr6_3:23963354-23963373 None:intergenic 10.0%
!!! CAAGTTTTGTATATATACTT+TGG - chr6_3:23962054-23962073 None:intergenic 20.0%
!!! TACATGCTTTTATATGAAAA+GGG + chr6_3:23962460-23962479 Msa0945230:CDS 20.0%
!! TATGTTAGTTCATAACATAA+AGG - chr6_3:23962587-23962606 None:intergenic 20.0%
!!! ACACATGTTTTTTTTTTGAA+GGG - chr6_3:23963975-23963994 None:intergenic 20.0%
!!! AACACATGTTTTTTTTTTGA+AGG - chr6_3:23963976-23963995 None:intergenic 20.0%
!! TCAAAAAAAAAACATGTGTT+TGG + chr6_3:23963976-23963995 Msa0945230:intron 20.0%
!! ACCTCAAATCAATATTATTT+AGG - chr6_3:23964238-23964257 None:intergenic 20.0%
!! ACATTTTATCTGAATTTTGC+AGG + chr6_3:23961885-23961904 Msa0945230:intron 25.0%
!! TATATACTTTGGAAGATAGA+AGG - chr6_3:23962043-23962062 None:intergenic 25.0%
!! GTACATGCTTTTATATGAAA+AGG + chr6_3:23962459-23962478 Msa0945230:CDS 25.0%
!!! CTGTTCTGAGTTTTAAATTT+AGG + chr6_3:23962612-23962631 Msa0945230:intron 25.0%
!!! TTCTGAGTTTTAAATTTAGG+AGG + chr6_3:23962615-23962634 Msa0945230:intron 25.0%
!!! TCTGAGTTTTAAATTTAGGA+GGG + chr6_3:23962616-23962635 Msa0945230:intron 25.0%
!! GTATAATTTTGAACTGTTTC+AGG + chr6_3:23962863-23962882 Msa0945230:intron 25.0%
! TTTAATATCTGTGTTACCTT+AGG - chr6_3:23963230-23963249 None:intergenic 25.0%
!!! TCTTGAACATTTTTTTTGAC+AGG + chr6_3:23963320-23963339 Msa0945230:intron 25.0%
!!! ACATTTTTTTTGACAGGTTT+CGG + chr6_3:23963326-23963345 Msa0945230:intron 25.0%
! TGTAATGATAAAACTTGCAA+GGG - chr6_3:23963739-23963758 None:intergenic 25.0%
! TTGTAATGATAAAACTTGCA+AGG - chr6_3:23963740-23963759 None:intergenic 25.0%
!! ACCTCTAATCAAATTTTTCA+CGG + chr6_3:23964023-23964042 Msa0945230:intron 25.0%
! ACAACCCAAATAAAAAGATT+TGG + chr6_3:23964104-23964123 Msa0945230:intron 25.0%
!!! CTGTCCAAATCTTTTTATTT+GGG - chr6_3:23964111-23964130 None:intergenic 25.0%
!! TCTGTCCAAATCTTTTTATT+TGG - chr6_3:23964112-23964131 None:intergenic 25.0%
!!! GCCTAAATAATATTGATTTG+AGG + chr6_3:23964234-23964253 Msa0945230:intron 25.0%
! TGATGATAAGCAACAACTTT+TGG - chr6_3:23960934-23960953 None:intergenic 30.0%
! AGTTGTTGCTTATCATCAAT+AGG + chr6_3:23960936-23960955 Msa0945230:CDS 30.0%
!! TGATTTCTGAAGCAAAAACA+AGG - chr6_3:23961069-23961088 None:intergenic 30.0%
AAATCATTCTCTCCTTCATT+TGG + chr6_3:23961083-23961102 Msa0945230:CDS 30.0%
ATGTGTATCTTTCAGATGAT+GGG + chr6_3:23961296-23961315 Msa0945230:CDS 30.0%
! GTGATAATAATGATTTTGCC+AGG + chr6_3:23961443-23961462 Msa0945230:CDS 30.0%
ATGTATGTTCTGCAATCTAA+AGG - chr6_3:23961537-23961556 None:intergenic 30.0%
! TCAAGAGATGGTATTACTTT+TGG + chr6_3:23961654-23961673 Msa0945230:CDS 30.0%
AAACTCAAATTATTGCTGTC+AGG - chr6_3:23961760-23961779 None:intergenic 30.0%
!! AGAAGATATCATTGATGATG+TGG + chr6_3:23961915-23961934 Msa0945230:CDS 30.0%
AAATTGAACAAAAGACAAGG+AGG - chr6_3:23962255-23962274 None:intergenic 30.0%
AGGAAATTGAACAAAAGACA+AGG - chr6_3:23962258-23962277 None:intergenic 30.0%
CTAATGTTGTGAAATTTCTG+AGG - chr6_3:23962278-23962297 None:intergenic 30.0%
ACTGCAAAGATTTAATCTCA+AGG - chr6_3:23962364-23962383 None:intergenic 30.0%
!! ATGAAAAGGGTATCATTGTA+CGG + chr6_3:23962473-23962492 Msa0945230:CDS 30.0%
ATATGAAACTGGCACTAAAT+GGG + chr6_3:23962776-23962795 Msa0945230:CDS 30.0%
!! AATTTTGAACTGTTTCAGGT+AGG + chr6_3:23962867-23962886 Msa0945230:intron 30.0%
GGATTTATCTTGCATTGTAA+CGG + chr6_3:23962927-23962946 Msa0945230:CDS 30.0%
TTGAATGATGTACTAATCCA+AGG + chr6_3:23963011-23963030 Msa0945230:CDS 30.0%
! ATCTGAGATTGAAGTGAAAA+CGG - chr6_3:23963260-23963279 None:intergenic 30.0%
TTACTAGAAGTCTTCTTAAC+TGG + chr6_3:23963402-23963421 Msa0945230:CDS 30.0%
TCAACTACTTGCAATCTATA+TGG + chr6_3:23963474-23963493 Msa0945230:CDS 30.0%
TTGCAATCTATATGGTTGTT+TGG + chr6_3:23963482-23963501 Msa0945230:CDS 30.0%
! GGAAGTCGTATTTATCATTT+TGG - chr6_3:23963593-23963612 None:intergenic 30.0%
CTATAAAAATGTTCGATGCT+CGG - chr6_3:23963614-23963633 None:intergenic 30.0%
! AAATATGTTGATTGTGAGGA+GGG - chr6_3:23963649-23963668 None:intergenic 30.0%
! AAAATATGTTGATTGTGAGG+AGG - chr6_3:23963650-23963669 None:intergenic 30.0%
! GACAAAATATGTTGATTGTG+AGG - chr6_3:23963653-23963672 None:intergenic 30.0%
! CACAATCAACATATTTTGTC+TGG + chr6_3:23963653-23963672 Msa0945230:CDS 30.0%
! AACATATTTTGTCTGGTAGT+TGG + chr6_3:23963660-23963679 Msa0945230:CDS 30.0%
TGGAGTTTATAGAGTGATAT+TGG + chr6_3:23963680-23963699 Msa0945230:CDS 30.0%
AGTTTATAGAGTGATATTGG+TGG + chr6_3:23963683-23963702 Msa0945230:CDS 30.0%
GTTTATAGAGTGATATTGGT+GGG + chr6_3:23963684-23963703 Msa0945230:CDS 30.0%
ATAAACTACCCTATCATTGA+AGG + chr6_3:23963759-23963778 Msa0945230:CDS 30.0%
TAAACTACCCTATCATTGAA+GGG + chr6_3:23963760-23963779 Msa0945230:CDS 30.0%
! AATGCCATTTAACATGTGTT+TGG + chr6_3:23963947-23963966 Msa0945230:intron 30.0%
TCCGTGAAAAATTTGATTAG+AGG - chr6_3:23964027-23964046 None:intergenic 30.0%
! CTAATCAAATTTTTCACGGA+TGG + chr6_3:23964027-23964046 Msa0945230:intron 30.0%
!! TCTTCAATGACATGTTTTTG+CGG - chr6_3:23964072-23964091 None:intergenic 30.0%
AACTGCAAGGTTATCATCTA+GGG + chr6_3:23960860-23960879 Msa0945230:five_prime_UTR 35.0%
! TAAGCAACAACTTTTGGACA+TGG - chr6_3:23960928-23960947 None:intergenic 35.0%
TAGGCTTCTTGTTCTATTAC+AGG + chr6_3:23960987-23961006 Msa0945230:CDS 35.0%
AGGCTTCTTGTTCTATTACA+GGG + chr6_3:23960988-23961007 Msa0945230:CDS 35.0%
! TTTTCCAAGACCAAGAAAAC+AGG + chr6_3:23961020-23961039 Msa0945230:CDS 35.0%
TTTCCAAGACCAAGAAAACA+GGG + chr6_3:23961021-23961040 Msa0945230:CDS 35.0%
ATATGAACACATCAACAGCA+GGG - chr6_3:23961186-23961205 None:intergenic 35.0%
! TCTAAAGTGGGTTCCTTAAT+TGG - chr6_3:23961220-23961239 None:intergenic 35.0%
!! GTGTTCATCACTTCTAAAGT+GGG - chr6_3:23961232-23961251 None:intergenic 35.0%
! AGTGTTCATCACTTCTAAAG+TGG - chr6_3:23961233-23961252 None:intergenic 35.0%
! GAACACTGTTTTATCATCCA+TGG + chr6_3:23961246-23961265 Msa0945230:CDS 35.0%
TACACATGAATCTTCTGTTG+AGG - chr6_3:23961283-23961302 None:intergenic 35.0%
CATGTGTATCTTTCAGATGA+TGG + chr6_3:23961295-23961314 Msa0945230:CDS 35.0%
! GAAGGTACAGAATAAAGAAC+AGG + chr6_3:23961389-23961408 Msa0945230:CDS 35.0%
! CAATTTGCAGAGAAAGTATG+AGG + chr6_3:23961587-23961606 Msa0945230:intron 35.0%
AGAGACATTCAGAAAAGATG+AGG + chr6_3:23961626-23961645 Msa0945230:CDS 35.0%
AGTAATACCATCTCTTGAGA+AGG - chr6_3:23961652-23961671 None:intergenic 35.0%
AGATCATTCATCAGTCATTG+AGG + chr6_3:23961677-23961696 Msa0945230:CDS 35.0%
TGTCTAGTATAAAGTGCAGA+TGG - chr6_3:23961866-23961885 None:intergenic 35.0%
! TACTTTGGAAGATAGAAGGA+TGG - chr6_3:23962039-23962058 None:intergenic 35.0%
AGGATGATATCTTTGGATCA+AGG - chr6_3:23962235-23962254 None:intergenic 35.0%
TTGAACAACTTCAGCTACAA+TGG + chr6_3:23962399-23962418 Msa0945230:intron 35.0%
! TGTTTTACAAGCAACCTTGT+GGG - chr6_3:23962523-23962542 None:intergenic 35.0%
! CTGCAACTTCGAGAATATTT+TGG + chr6_3:23962648-23962667 Msa0945230:CDS 35.0%
!!! TACACAAGAGTTTTTTTCCC+AGG + chr6_3:23962708-23962727 Msa0945230:CDS 35.0%
GCTTCTTGTAGATATGAAAC+TGG + chr6_3:23962765-23962784 Msa0945230:CDS 35.0%
GATATGAAACTGGCACTAAA+TGG + chr6_3:23962775-23962794 Msa0945230:CDS 35.0%
TATGAAACTGGCACTAAATG+GGG + chr6_3:23962777-23962796 Msa0945230:CDS 35.0%
AATGCAAGATAAATCCAGTC+AGG - chr6_3:23962923-23962942 None:intergenic 35.0%
! TTATCTTGCATTGTAACGGA+TGG + chr6_3:23962931-23962950 Msa0945230:CDS 35.0%
!! TACTCTGGTTTGTTCGAAAA+CGG + chr6_3:23963044-23963063 Msa0945230:intron 35.0%
AAAGGGGCAAACAATAAAGA+GGG - chr6_3:23963154-23963173 None:intergenic 35.0%
CATTTAGTAGACAGAACTGA+GGG - chr6_3:23963193-23963212 None:intergenic 35.0%
TGTGTTACCTTAGGATACAA+GGG - chr6_3:23963221-23963240 None:intergenic 35.0%
GATGCTTTACTGAAGAAAGT+TGG + chr6_3:23963504-23963523 Msa0945230:CDS 35.0%
CTTACCTACTAATAAAGCAG+AGG + chr6_3:23963545-23963564 Msa0945230:CDS 35.0%
! TCATCCTCTGCTTTATTAGT+AGG - chr6_3:23963552-23963571 None:intergenic 35.0%
GGTTCCAAACACATGTTAAA+TGG - chr6_3:23963954-23963973 None:intergenic 35.0%
! TTTTGCGGTCATAAAACATC+TGG - chr6_3:23964057-23964076 None:intergenic 35.0%
TGTCATTGAAGAGTGATACT+TGG + chr6_3:23964080-23964099 Msa0945230:intron 35.0%
GAACTGCAAGGTTATCATCT+AGG + chr6_3:23960859-23960878 Msa0945230:five_prime_UTR 40.0%
GGTTATCATCTAGGGAGAAA+TGG + chr6_3:23960868-23960887 Msa0945230:exon 40.0%
TATCATCTAGGGAGAAATGG+AGG + chr6_3:23960871-23960890 Msa0945230:exon 40.0%
TTCCAAGACCAAGAAAACAG+GGG + chr6_3:23961022-23961041 Msa0945230:CDS 40.0%
TGGGAAGACATAACGTGAAA+CGG - chr6_3:23961137-23961156 None:intergenic 40.0%
CATATGAACACATCAACAGC+AGG - chr6_3:23961187-23961206 None:intergenic 40.0%
ATGCACTGCAGATCCAATTA+AGG + chr6_3:23961204-23961223 Msa0945230:CDS 40.0%
TTGAGGATAATCTAGTGCCA+TGG - chr6_3:23961266-23961285 None:intergenic 40.0%
ATTCTGTACCTTCTGCAGAA+GGG - chr6_3:23961382-23961401 None:intergenic 40.0%
TATTCTGTACCTTCTGCAGA+AGG - chr6_3:23961383-23961402 None:intergenic 40.0%
AAAGCAGAAAAGTAGGCCTT+GGG - chr6_3:23961418-23961437 None:intergenic 40.0%
ACTCTCCAAAGCAGAAAAGT+AGG - chr6_3:23961425-23961444 None:intergenic 40.0%
GGCAGAGAAGCAAAAGATTA+AGG + chr6_3:23961480-23961499 Msa0945230:CDS 40.0%
CTCGAAACATAGACAAGTTG+TGG - chr6_3:23961955-23961974 None:intergenic 40.0%
CAATCCAGAACTAGGATGTA+GGG - chr6_3:23962161-23962180 None:intergenic 40.0%
ACAATCCAGAACTAGGATGT+AGG - chr6_3:23962162-23962181 None:intergenic 40.0%
ACATGTCACAATCCAGAACT+AGG - chr6_3:23962169-23962188 None:intergenic 40.0%
ATGGCATATCGAGCTGAATT+TGG - chr6_3:23962203-23962222 None:intergenic 40.0%
TGGATCAAGGTGAAAACACA+TGG - chr6_3:23962222-23962241 None:intergenic 40.0%
GACAAGGAGGATGATATCTT+TGG - chr6_3:23962242-23962261 None:intergenic 40.0%
AACTTCAGCTACAATGGCAA+GGG + chr6_3:23962405-23962424 Msa0945230:intron 40.0%
AAGCATGTACCTGACAATAC+AGG - chr6_3:23962449-23962468 None:intergenic 40.0%
TACGGAAATCAAGCGAATGA+AGG + chr6_3:23962491-23962510 Msa0945230:CDS 40.0%
!! AATGAAGGTATTGACCCACA+AGG + chr6_3:23962506-23962525 Msa0945230:intron 40.0%
! GTGTTTTACAAGCAACCTTG+TGG - chr6_3:23962524-23962543 None:intergenic 40.0%
AATATTCTCGAAGTTGCAGC+AGG - chr6_3:23962647-23962666 None:intergenic 40.0%
!!! CAAGAGTTTTTTTCCCAGGA+CGG + chr6_3:23962712-23962731 Msa0945230:CDS 40.0%
!! GCATTGTAACGGATGGAATT+CGG + chr6_3:23962938-23962957 Msa0945230:CDS 40.0%
AATTTGTCGTAGCTGTACCA+AGG - chr6_3:23962992-23963011 None:intergenic 40.0%
! TACTAATCCAAGGCACTAGA+TGG + chr6_3:23963021-23963040 Msa0945230:CDS 40.0%
!! ACTCTGGTTTGTTCGAAAAC+GGG + chr6_3:23963045-23963064 Msa0945230:intron 40.0%
TTAAAGGCCCATATATGAGG+GGG - chr6_3:23963085-23963104 None:intergenic 40.0%
CTTAAAGGCCCATATATGAG+GGG - chr6_3:23963086-23963105 None:intergenic 40.0%
CCTTAAAGGCCCATATATGA+GGG - chr6_3:23963087-23963106 None:intergenic 40.0%
TCCTTAAAGGCCCATATATG+AGG - chr6_3:23963088-23963107 None:intergenic 40.0%
!! AAACACAGACTTTGGAGTAG+TGG - chr6_3:23963113-23963132 None:intergenic 40.0%
CAAAGGGGCAAACAATAAAG+AGG - chr6_3:23963155-23963174 None:intergenic 40.0%
CTCTTTATTGTTTGCCCCTT+TGG + chr6_3:23963153-23963172 Msa0945230:CDS 40.0%
CCATTTAGTAGACAGAACTG+AGG - chr6_3:23963194-23963213 None:intergenic 40.0%
CCTCAGTTCTGTCTACTAAA+TGG + chr6_3:23963191-23963210 Msa0945230:CDS 40.0%
TGGAATACCCTTGTATCCTA+AGG + chr6_3:23963211-23963230 Msa0945230:CDS 40.0%
CTGTGTTACCTTAGGATACA+AGG - chr6_3:23963222-23963241 None:intergenic 40.0%
GAGATTGAAGTGAAAACGGT+AGG - chr6_3:23963256-23963275 None:intergenic 40.0%
CTAGAAGTCTTCTTAACTGG+AGG + chr6_3:23963405-23963424 Msa0945230:CDS 40.0%
CTGGAGGAACACTACATAAA+TGG + chr6_3:23963421-23963440 Msa0945230:CDS 40.0%
! AGTGATATTGGTGGGTGATT+GGG + chr6_3:23963692-23963711 Msa0945230:CDS 40.0%
TTGGGACCAAATGTTCATAC+AGG + chr6_3:23963710-23963729 Msa0945230:CDS 40.0%
! GATTAGAGGTGCAGAAGATT+GGG - chr6_3:23964013-23964032 None:intergenic 40.0%
! TGATTAGAGGTGCAGAAGAT+TGG - chr6_3:23964014-23964033 None:intergenic 40.0%
GAGAAATGGAGGTAACCCAA+GGG + chr6_3:23960882-23960901 Msa0945230:exon 45.0%
ATTGAGAGGAAGAGTCCCTT+GGG - chr6_3:23960900-23960919 None:intergenic 45.0%
TATTGAGAGGAAGAGTCCCT+TGG - chr6_3:23960901-23960920 None:intergenic 45.0%
! CAACAACTTTTGGACATGGC+AGG - chr6_3:23960924-23960943 None:intergenic 45.0%
ACACATGCTCCTTCATTCCA+TGG + chr6_3:23960961-23960980 Msa0945230:CDS 45.0%
! TTCCCCTGTTTTCTTGGTCT+TGG - chr6_3:23961027-23961046 None:intergenic 45.0%
! AATGGCTTCCCCTGTTTTCT+TGG - chr6_3:23961033-23961052 None:intergenic 45.0%
CAAGGAGCCATGGTAACAAA+TGG - chr6_3:23961051-23961070 None:intergenic 45.0%
GAAGCAAAAACAAGGAGCCA+TGG - chr6_3:23961061-23961080 None:intergenic 45.0%
! CTCTCCTTCATTTGGTTCCT+TGG + chr6_3:23961091-23961110 Msa0945230:CDS 45.0%
TTGGCCAAGGAACCAAATGA+AGG - chr6_3:23961098-23961117 None:intergenic 45.0%
GGGAAGACATAACGTGAAAC+GGG - chr6_3:23961136-23961155 None:intergenic 45.0%
TCACACCATACAGAGTCATG+GGG - chr6_3:23961327-23961346 None:intergenic 45.0%
CTCACACCATACAGAGTCAT+GGG - chr6_3:23961328-23961347 None:intergenic 45.0%
AATAAAGAACAGGTGCCCCA+AGG + chr6_3:23961399-23961418 Msa0945230:CDS 45.0%
AAGCAGAAAAGTAGGCCTTG+GGG - chr6_3:23961417-23961436 None:intergenic 45.0%
CAAAGCAGAAAAGTAGGCCT+TGG - chr6_3:23961419-23961438 None:intergenic 45.0%
!! CAAGGCCTACTTTTCTGCTT+TGG + chr6_3:23961417-23961436 Msa0945230:CDS 45.0%
TGCCAGGAGTAGTGTTTACA+TGG + chr6_3:23961459-23961478 Msa0945230:CDS 45.0%
TGCCATGTAAACACTACTCC+TGG - chr6_3:23961464-23961483 None:intergenic 45.0%
TTCTCCCTACATCCTAGTTC+TGG + chr6_3:23962154-23962173 Msa0945230:CDS 45.0%
CAACTTCAGCTACAATGGCA+AGG + chr6_3:23962404-23962423 Msa0945230:intron 45.0%
CTTAAGGGACCTGTATTGTC+AGG + chr6_3:23962437-23962456 Msa0945230:CDS 45.0%
CTACAAGAAGCCAACAAGTG+AGG - chr6_3:23962756-23962775 None:intergenic 45.0%
GTAGTCGAAGATTTCCTGAC+TGG + chr6_3:23962906-23962925 Msa0945230:CDS 45.0%
GTTCGAAAACGGGATAAGCA+AGG + chr6_3:23963055-23963074 Msa0945230:intron 45.0%
AAGGTTTGCCCCCTCATATA+TGG + chr6_3:23963074-23963093 Msa0945230:intron 45.0%
AGGTTTGCCCCCTCATATAT+GGG + chr6_3:23963075-23963094 Msa0945230:intron 45.0%
CCCTCATATATGGGCCTTTA+AGG + chr6_3:23963084-23963103 Msa0945230:intron 45.0%
TGGAGTAGTGGCATCCTTAA+AGG - chr6_3:23963101-23963120 None:intergenic 45.0%
GCTCTGCAAAACACAGACTT+TGG - chr6_3:23963121-23963140 None:intergenic 45.0%
ATGGTGGCAAAACACCAAAG+GGG - chr6_3:23963170-23963189 None:intergenic 45.0%
! GATGGTGGCAAAACACCAAA+GGG - chr6_3:23963171-23963190 None:intergenic 45.0%
TAGTAGACAGAACTGAGGGA+TGG - chr6_3:23963189-23963208 None:intergenic 45.0%
GGATCAATGAGCAGAGAATC+TGG + chr6_3:23963442-23963461 Msa0945230:CDS 45.0%
! GAGTGATATTGGTGGGTGAT+TGG + chr6_3:23963691-23963710 Msa0945230:CDS 45.0%
GGGCAACCTGTATGAACATT+TGG - chr6_3:23963719-23963738 None:intergenic 45.0%
TCACCAGCCCTTCAATGATA+GGG - chr6_3:23963770-23963789 None:intergenic 45.0%
ATCACCAGCCCTTCAATGAT+AGG - chr6_3:23963771-23963790 None:intergenic 45.0%
! TCATTGAAGGGCTGGTGATA+AGG + chr6_3:23963772-23963791 Msa0945230:CDS 45.0%
CTGGTGATAAGGAAGGACAA+GGG + chr6_3:23963783-23963802 Msa0945230:CDS 45.0%
GGAGAAATGGAGGTAACCCA+AGG + chr6_3:23960881-23960900 Msa0945230:exon 50.0%
!! TGGACATGGCAGGTATTGAG+AGG - chr6_3:23960914-23960933 None:intergenic 50.0%
CTCCTTCATTCCATGGCTCT+AGG + chr6_3:23960968-23960987 Msa0945230:CDS 50.0%
AGCCTAGAGCCATGGAATGA+AGG - chr6_3:23960973-23960992 None:intergenic 50.0%
GAACAAGAAGCCTAGAGCCA+TGG - chr6_3:23960981-23961000 None:intergenic 50.0%
! GGGGAAGCCATTTGTTACCA+TGG + chr6_3:23961041-23961060 Msa0945230:CDS 50.0%
CATCCTCTGGCAATCTCTCT+GGG - chr6_3:23961156-23961175 None:intergenic 50.0%
TCATCCTCTGGCAATCTCTC+TGG - chr6_3:23961157-23961176 None:intergenic 50.0%
TGTTCCCCCATGACTCTGTA+TGG + chr6_3:23961319-23961338 Msa0945230:CDS 50.0%
CACACCATACAGAGTCATGG+GGG - chr6_3:23961326-23961345 None:intergenic 50.0%
CCTCACACCATACAGAGTCA+TGG - chr6_3:23961329-23961348 None:intergenic 50.0%
CCATGACTCTGTATGGTGTG+AGG + chr6_3:23961326-23961345 Msa0945230:CDS 50.0%
GACTCTGTATGGTGTGAGGA+AGG + chr6_3:23961330-23961349 Msa0945230:CDS 50.0%
TGTATGGTGTGAGGAAGGCT+TGG + chr6_3:23961335-23961354 Msa0945230:CDS 50.0%
GTATGGTGTGAGGAAGGCTT+GGG + chr6_3:23961336-23961355 Msa0945230:CDS 50.0%
GATGAGGCCTTCTCAAGAGA+TGG + chr6_3:23961642-23961661 Msa0945230:CDS 50.0%
AGTCCCCACCATTTCAAAGC+TGG + chr6_3:23961991-23962010 Msa0945230:CDS 50.0%
!! GCTCCAGCTTTGAAATGGTG+GGG - chr6_3:23961997-23962016 None:intergenic 50.0%
!! GGCTCCAGCTTTGAAATGGT+GGG - chr6_3:23961998-23962017 None:intergenic 50.0%
!! TGAGGGCTCCAGCTTTGAAA+TGG - chr6_3:23962002-23962021 None:intergenic 50.0%
GAGCCCTCAATGTCCTTGTA+CGG + chr6_3:23962013-23962032 Msa0945230:intron 50.0%
TGGCCGTACAAGGACATTGA+GGG - chr6_3:23962019-23962038 None:intergenic 50.0%
ATGGCCGTACAAGGACATTG+AGG - chr6_3:23962020-23962039 None:intergenic 50.0%
GATAGAAGGATGGCCGTACA+AGG - chr6_3:23962029-23962048 None:intergenic 50.0%
TCAGCTACAATGGCAAGGGA+TGG + chr6_3:23962409-23962428 Msa0945230:intron 50.0%
CTACAATGGCAAGGGATGGA+CGG + chr6_3:23962413-23962432 Msa0945230:CDS 50.0%
TACAATGGCAAGGGATGGAC+GGG + chr6_3:23962414-23962433 Msa0945230:CDS 50.0%
CGAGCAATGTATTCCGTCCT+GGG - chr6_3:23962728-23962747 None:intergenic 50.0%
TCGAGCAATGTATTCCGTCC+TGG - chr6_3:23962729-23962748 None:intergenic 50.0%
GCTCGAAGAACCTCACTTGT+TGG + chr6_3:23962743-23962762 Msa0945230:CDS 50.0%
! CGGTTTTCTGCGAACCATCT+AGG + chr6_3:23962958-23962977 Msa0945230:CDS 50.0%
GTAGCTGTACCAAGGAACTG+TGG - chr6_3:23962984-23963003 None:intergenic 50.0%
! CAGAGTACCATCTAGTGCCT+TGG - chr6_3:23963031-23963050 None:intergenic 50.0%
! CAAGGCACTAGATGGTACTC+TGG + chr6_3:23963029-23963048 Msa0945230:CDS 50.0%
! GGATGGTGGCAAAACACCAA+AGG - chr6_3:23963172-23963191 None:intergenic 50.0%
TAGACAGAACTGAGGGATGG+TGG - chr6_3:23963186-23963205 None:intergenic 50.0%
ATTGTGAGGAGGGCAAGCAT+TGG - chr6_3:23963639-23963658 None:intergenic 50.0%
CTACCCTATCATTGAAGGGC+TGG + chr6_3:23963764-23963783 Msa0945230:CDS 50.0%
! TGAAGGGCTGGTGATAAGGA+AGG + chr6_3:23963776-23963795 Msa0945230:CDS 50.0%
GCTGGTGATAAGGAAGGACA+AGG + chr6_3:23963782-23963801 Msa0945230:CDS 50.0%
CAAGGGACGCATTTCACAGT+CGG + chr6_3:23963800-23963819 Msa0945230:CDS 50.0%
TGCAGAAGATTGGGAGGCTA+TGG - chr6_3:23964004-23964023 None:intergenic 50.0%
! TAGAGGTGCAGAAGATTGGG+AGG - chr6_3:23964010-23964029 None:intergenic 50.0%
TCCTTGGCCAAGCTTATCGC+TGG + chr6_3:23961107-23961126 Msa0945230:CDS 55.0%
CTTCCCAGAGAGATTGCCAG+AGG + chr6_3:23961150-23961169 Msa0945230:CDS 55.0%
GGAAGGCTTGGGAGTTTGCA+AGG + chr6_3:23961347-23961366 Msa0945230:CDS 55.0%
AGGCTTGGGAGTTTGCAAGG+TGG + chr6_3:23961350-23961369 Msa0945230:CDS 55.0%
CTTGGGAGTTTGCAAGGTGG+TGG + chr6_3:23961353-23961372 Msa0945230:CDS 55.0%
!! GGGCTCCAGCTTTGAAATGG+TGG - chr6_3:23961999-23962018 None:intergenic 55.0%
! CAAGGGATGGACGGGCTTAA+GGG + chr6_3:23962422-23962441 Msa0945230:CDS 55.0%
CCAAGGAACTGTGGCCTAGA+TGG - chr6_3:23962975-23962994 None:intergenic 55.0%
CCATCTAGGCCACAGTTCCT+TGG + chr6_3:23962972-23962991 Msa0945230:CDS 55.0%
GCCAGCGATAAGCTTGGCCA+AGG - chr6_3:23961111-23961130 None:intergenic 60.0%
GCAGGGAGCTTGTCATCCTC+TGG - chr6_3:23961169-23961188 None:intergenic 60.0%
GGTGGCTTCCCTTCTGCAGA+AGG + chr6_3:23961371-23961390 Msa0945230:CDS 60.0%
! GCAAGGGATGGACGGGCTTA+AGG + chr6_3:23962421-23962440 Msa0945230:CDS 60.0%
CGGGACGCCAGCGATAAGCT+TGG - chr6_3:23961117-23961136 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 23960858 23964307 23960858 ID=Msa0945230;Name=Msa0945230
chr6_3 mRNA 23960858 23964307 23960858 ID=Msa0945230-mRNA-1;Parent=Msa0945230;Name=Msa0945230-mRNA-1;_AED=0.13;_eAED=0.13;_QI=29|0.77|0.6|0.9|1|1|10|0|701
chr6_3 exon 23960858 23961501 23960858 ID=Msa0945230-mRNA-1:exon:6728;Parent=Msa0945230-mRNA-1
chr6_3 exon 23961597 23961698 23961597 ID=Msa0945230-mRNA-1:exon:6729;Parent=Msa0945230-mRNA-1
chr6_3 exon 23961907 23962029 23961907 ID=Msa0945230-mRNA-1:exon:6730;Parent=Msa0945230-mRNA-1
chr6_3 exon 23962128 23962340 23962128 ID=Msa0945230-mRNA-1:exon:6731;Parent=Msa0945230-mRNA-1
chr6_3 exon 23962413 23962512 23962413 ID=Msa0945230-mRNA-1:exon:6732;Parent=Msa0945230-mRNA-1
chr6_3 exon 23962634 23962806 23962634 ID=Msa0945230-mRNA-1:exon:6733;Parent=Msa0945230-mRNA-1
chr6_3 exon 23962885 23963050 23962885 ID=Msa0945230-mRNA-1:exon:6734;Parent=Msa0945230-mRNA-1
chr6_3 exon 23963138 23963232 23963138 ID=Msa0945230-mRNA-1:exon:6735;Parent=Msa0945230-mRNA-1
chr6_3 exon 23963342 23963821 23963342 ID=Msa0945230-mRNA-1:exon:6736;Parent=Msa0945230-mRNA-1
chr6_3 exon 23964269 23964307 23964269 ID=Msa0945230-mRNA-1:exon:6737;Parent=Msa0945230-mRNA-1
chr6_3 five_prime_UTR 23960858 23960886 23960858 ID=Msa0945230-mRNA-1:five_prime_utr;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23960887 23961501 23960887 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23961597 23961698 23961597 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23961907 23962029 23961907 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23962128 23962340 23962128 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23962413 23962512 23962413 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23962634 23962806 23962634 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23962885 23963050 23962885 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23963138 23963232 23963138 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23963342 23963821 23963342 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
chr6_3 CDS 23964269 23964307 23964269 ID=Msa0945230-mRNA-1:cds;Parent=Msa0945230-mRNA-1
Gene Sequence

>Msa0945230

ATGGAGGTAACCCAAGGGACTCTTCCTCTCAATACCTGCCATGTCCAAAAGTTGTTGCTTATCATCAATAGGTTACACATGCTCCTTCATTCCATGGCTCTAGGCTTCTTGTTCTATTACAGGGTGTGCTTTCTTTTCCAAGACCAAGAAAACAGGGGAAGCCATTTGTTACCATGGCTCCTTGTTTTTGCTTCAGAAATCATTCTCTCCTTCATTTGGTTCCTTGGCCAAGCTTATCGCTGGCGTCCCGTTTCACGTTATGTCTTCCCAGAGAGATTGCCAGAGGATGACAAGCTCCCTGCTGTTGATGTGTTCATATGCACTGCAGATCCAATTAAGGAACCCACTTTAGAAGTGATGAACACTGTTTTATCATCCATGGCACTAGATTATCCTCAACAGAAGATTCATGTGTATCTTTCAGATGATGGGTGTTCCCCCATGACTCTGTATGGTGTGAGGAAGGCTTGGGAGTTTGCAAGGTGGTGGCTTCCCTTCTGCAGAAGGTACAGAATAAAGAACAGGTGCCCCAAGGCCTACTTTTCTGCTTTGGAGAGTGATAATAATGATTTTGCCAGGAGTAGTGTTTACATGGCAGAGAAGCAAAAGATTAAGAGAAAGTATGAGGCTTTTAAAGAAGAGATAGAGACATTCAGAAAAGATGAGGCCTTCTCAAGAGATGGTATTACTTTTGGAGATCATTCATCAGTCATTGAGGTGATGCAAGAAGATATCATTGATGATGTGGATAATGTCAAAATGCCACAACTTGTCTATGTTTCGAGAGAGAGAAAGTCTTCTAGTCCCCACCATTTCAAAGCTGGAGCCCTCAATGTCCTTCTTCGTGTATCTGCTGTGATGAGTAATTCTCCCTACATCCTAGTTCTGGATTGTGACATGTTCTGCAACTATCCAAATTCAGCTCGATATGCCATGTGTTTTCACCTTGATCCAAAGATATCATCCTCCTTGTCTTTTGTTCAATTTCCTCAGAAATTTCACAACATTAGCAAGAAAGACATCTATGACAGTCAGCTGAGATCATTATTTACTCTACAATGGCAAGGGATGGACGGGCTTAAGGGACCTGTATTGTCAGGTACATGCTTTTATATGAAAAGGGTATCATTGTACGGAAATCAAGCGAATGAAGGAGGGACTGACCTGCTGCAACTTCGAGAATATTTTGGTTCATCGAATGAATTCATCAAATCACTTGCTCAAAACTACACAAGAGTTTTTTTCCCAGGACGGAATACATTGCTCGAAGAACCTCACTTGTTGGCTTCTTGTAGATATGAAACTGGCACTAAATGGGGACAAGATGTAGGTTTCTTATACGATAGTGTAGTCGAAGATTTCCTGACTGGATTTATCTTGCATTGTAACGGATGGAATTCGGTTTTCTGCGAACCATCTAGGCCACAGTTCCTTGGTACAGCTACGACAAATTTGAATGATGTACTAATCCAAGGCACTAGATGGTACTCTGAGCTCACATATTTCCCTCTTTATTGTTTGCCCCTTTGGTGTTTTGCCACCATCCCTCAGTTCTGTCTACTAAATGGAATACCCTTGTATCCTAAGGTTTCGGATCCATATTTTATCATCTTTTTATTCATATTTTTATCATCTCTTTCAAAACATTTACTAGAAGTCTTCTTAACTGGAGGAACACTACATAAATGGATCAATGAGCAGAGAATCTGGATGATGAAATCAACTACTTGCAATCTATATGGTTGTTTGGATGCTTTACTGAAGAAAGTTGGAATAAGACAAGCTAATTTCTTACCTACTAATAAAGCAGAGGATGATGAACAAACTCTGCTATACCAAAATGATAAATACGACTTCCGAGCATCGAACATTTTTATAGTTCCAATGCTTGCCCTCCTCACAATCAACATATTTTGTCTGGTAGTTGGAGTTTATAGAGTGATATTGGTGGGTGATTGGGACCAAATGTTCATACAGGTTGCCCTTGCAAGTTTTATCATTACAATAAACTACCCTATCATTGAAGGGCTGGTGATAAGGAAGGACAAGGGACGCATTTCACAGTCGAAGACTTACTCGTCATTGAAATGTGCACCATTATATTAG
Protein sequence

>Msa0945230

MEVTQGTLPLNTCHVQKLLLIINRLHMLLHSMALGFLFYYRVCFLFQDQENRGSHLLPWLLVFASEIILSFIWFLGQAYRWRPVSRYVFPERLPEDDKLPAVDVFICTADPIKEPTLEVMNTVLSSMALDYPQQKIHVYLSDDGCSPMTLYGVRKAWEFARWWLPFCRRYRIKNRCPKAYFSALESDNNDFARSSVYMAEKQKIKRKYEAFKEEIETFRKDEAFSRDGITFGDHSSVIEVMQEDIIDDVDNVKMPQLVYVSRERKSSSPHHFKAGALNVLLRVSAVMSNSPYILVLDCDMFCNYPNSARYAMCFHLDPKISSSLSFVQFPQKFHNISKKDIYDSQLRSLFTLQWQGMDGLKGPVLSGTCFYMKRVSLYGNQANEGGTDLLQLREYFGSSNEFIKSLAQNYTRVFFPGRNTLLEEPHLLASCRYETGTKWGQDVGFLYDSVVEDFLTGFILHCNGWNSVFCEPSRPQFLGTATTNLNDVLIQGTRWYSELTYFPLYCLPLWCFATIPQFCLLNGIPLYPKVSDPYFIIFLFIFLSSLSKHLLEVFLTGGTLHKWINEQRIWMMKSTTCNLYGCLDALLKKVGIRQANFLPTNKAEDDEQTLLYQNDKYDFRASNIFIVPMLALLTINIFCLVVGVYRVILVGDWDQMFIQVALASFIITINYPIIEGLVIRKDKGRISQSKTYSSLKCAPLY*