AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480770 MtrunA17_Chr4g0046401 91.086 718 35 1 1 689 1 718 0.0 1332
Msa0480770 MtrunA17_Chr1g0186381 60.139 720 254 5 5 694 6 722 0.0 904
Msa0480770 MtrunA17_Chr2g0307191 43.902 697 337 11 20 683 15 690 0.0 594
Msa0480770 MtrunA17_Chr3g0095791 42.529 696 347 9 20 683 15 689 0.0 587
Msa0480770 MtrunA17_Chr2g0298581 41.404 698 355 8 20 684 15 691 0.0 582
Msa0480770 MtrunA17_Chr3g0077511 41.117 698 357 7 20 683 15 692 0.0 575
Msa0480770 MtrunA17_Chr3g0102541 35.766 685 384 10 59 698 52 725 1.28e-141 432
Msa0480770 MtrunA17_Chr3g0102531 35.389 681 388 9 59 698 52 721 7.31e-141 429
Msa0480770 MtrunA17_Chr3g0102551 35.302 728 402 16 21 698 21 729 7.41e-139 425
Msa0480770 MtrunA17_Chr4g0073711 31.365 762 405 16 24 683 251 996 8.72e-116 372
Msa0480770 MtrunA17_Chr2g0284211 31.532 777 411 16 15 683 172 935 4.56e-115 369
Msa0480770 MtrunA17_Chr8g0379241 31.552 786 415 19 6 683 177 947 4.22e-114 367
Msa0480770 MtrunA17_Chr8g0364641 31.447 760 400 18 19 683 206 939 1.26e-113 365
Msa0480770 MtrunA17_Chr1g0183381 30.880 761 410 18 24 686 123 865 8.31e-110 353
Msa0480770 MtrunA17_Chr2g0322361 31.721 703 407 18 40 684 37 724 1.64e-107 343
Msa0480770 MtrunA17_Chr2g0322371 32.507 686 389 18 57 684 45 714 3.74e-106 339
Msa0480770 MtrunA17_Chr2g0322351 32.810 637 367 12 57 645 47 670 6.37e-101 325
Msa0480770 MtrunA17_Chr4g0025201 30.312 673 408 15 57 677 47 710 1.10e-98 320
Msa0480770 MtrunA17_Chr5g0410641 28.469 836 421 20 14 683 258 1082 6.02e-92 309
Msa0480770 MtrunA17_Chr4g0039801 28.485 825 415 18 24 683 289 1103 5.26e-91 307
Msa0480770 MtrunA17_Chr7g0269741 27.976 840 422 19 15 683 304 1131 3.16e-89 302
Msa0480770 MtrunA17_Chr1g0165411 27.785 817 420 19 24 683 261 1064 4.48e-88 298
Msa0480770 MtrunA17_Chr1g0165421 27.885 832 414 21 24 683 275 1092 5.86e-87 296
Msa0480770 MtrunA17_Chr2g0297351 26.723 827 427 22 24 686 175 986 3.27e-85 289
Msa0480770 MtrunA17_Chr8g0383701 36.387 382 210 7 24 382 289 660 5.86e-73 256
Msa0480770 MtrunA17_Chr8g0383701 31.778 343 190 8 379 683 718 1054 6.36e-43 167
Msa0480770 MtrunA17_Chr7g0267731 36.772 378 212 8 24 381 183 553 3.02e-72 253
Msa0480770 MtrunA17_Chr7g0267731 29.966 297 168 5 421 683 654 944 2.91e-35 143
Msa0480770 MtrunA17_Chr1g0201731 36.675 379 213 8 24 382 291 662 3.04e-71 251
Msa0480770 MtrunA17_Chr1g0201731 31.902 326 184 6 390 682 734 1054 3.69e-39 155
Msa0480770 MtrunA17_Chr3g0088821 38.123 341 190 4 59 379 300 639 9.95e-71 249
Msa0480770 MtrunA17_Chr3g0088821 29.358 327 194 5 390 683 714 1036 4.72e-38 152
Msa0480770 MtrunA17_Chr2g0296991 36.412 379 208 9 24 379 222 590 3.31e-70 248
Msa0480770 MtrunA17_Chr2g0296991 30.530 321 185 5 396 683 687 1002 8.27e-40 157
Msa0480770 MtrunA17_Chr8g0352231 37.609 343 193 4 59 381 300 641 1.13e-68 244
Msa0480770 MtrunA17_Chr8g0352231 30.218 321 187 5 396 683 720 1036 3.59e-39 155
Msa0480770 MtrunA17_Chr3g0137951 36.436 376 212 7 24 379 281 649 2.50e-67 240
Msa0480770 MtrunA17_Chr3g0137951 29.755 326 190 6 392 683 724 1044 3.88e-38 152
Msa0480770 MtrunA17_Chr7g0274751 33.137 510 241 14 59 470 141 648 3.51e-67 236
Msa0480770 MtrunA17_Chr3g0078671 35.356 379 218 7 24 382 238 609 3.60e-67 239
Msa0480770 MtrunA17_Chr3g0078671 28.116 345 208 8 376 683 666 1007 1.13e-38 154
Msa0480770 MtrunA17_Chr2g0322341 37.097 310 175 6 53 349 45 347 5.88e-64 216
Msa0480770 MtrunA17_Chr2g0307241 47.312 186 89 2 20 205 15 191 3.15e-58 196
Msa0480770 MtrunA17_Chr2g0322331 25.000 328 211 5 391 684 29 355 6.58e-21 95.5
Msa0480770 MtrunA17_Chr2g0307231 46.078 102 50 2 333 430 2 102 5.14e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480770 AT4G24000.1 37.083 720 382 15 10 688 11 700 1.28e-154 465
Msa0480770 AT4G24010.1 36.276 725 396 13 10 692 14 714 3.09e-152 460
Msa0480770 AT4G23990.1 36.791 723 395 11 6 688 29 729 8.73e-150 454
Msa0480770 AT1G55850.1 33.921 681 386 10 57 698 64 719 1.33e-129 400
Msa0480770 AT5G17420.1 31.868 728 383 13 59 683 267 984 8.87e-117 375
Msa0480770 AT5G64740.1 31.202 782 401 18 24 683 276 1042 2.30e-113 367
Msa0480770 AT5G09870.1 30.680 779 406 19 24 683 264 1027 8.48e-110 357
Msa0480770 AT2G25540.1 30.288 799 426 19 3 683 233 1018 2.50e-109 356
Msa0480770 AT4G24000.2 36.415 530 277 10 196 688 2 508 4.64e-109 341
Msa0480770 AT4G32410.1 30.670 776 410 18 24 683 275 1038 9.02e-109 355
Msa0480770 AT4G18780.1 31.443 776 398 17 24 683 184 941 1.37e-108 352
Msa0480770 AT4G23990.2 36.415 530 284 8 196 688 2 515 5.19e-104 328
Msa0480770 AT2G32540.1 29.630 702 398 17 59 684 51 732 6.68e-104 334
Msa0480770 AT2G32530.1 31.792 692 369 24 34 646 30 697 1.76e-103 333
Msa0480770 AT4G15320.3 30.683 717 398 20 37 677 36 729 7.45e-102 329
Msa0480770 AT4G15320.5 30.683 717 398 20 37 677 36 729 9.91e-102 328
Msa0480770 AT4G15320.4 30.737 706 390 20 59 677 51 744 5.51e-100 324
Msa0480770 AT2G32620.1 30.226 708 388 22 59 684 51 734 9.43e-98 318
Msa0480770 AT4G15290.1 31.259 659 367 19 59 647 51 693 1.29e-95 312
Msa0480770 AT2G32610.1 30.827 665 354 20 59 642 51 690 9.03e-94 307
Msa0480770 AT2G32620.2 35.388 503 267 14 59 518 51 538 1.05e-92 298
Msa0480770 AT2G32620.3 34.087 531 275 15 59 529 51 566 4.74e-92 299
Msa0480770 AT4G38190.1 28.218 808 420 18 24 683 272 1067 2.51e-91 308
Msa0480770 AT1G32180.1 27.929 845 419 22 15 683 113 943 1.82e-89 301
Msa0480770 AT1G32180.2 27.929 845 419 22 15 683 113 943 1.82e-89 301
Msa0480770 AT1G02730.1 27.896 846 408 22 24 686 318 1144 7.47e-88 299
Msa0480770 AT2G33100.2 27.108 830 422 23 24 683 183 999 1.00e-87 297
Msa0480770 AT2G33100.1 27.108 830 422 23 24 683 183 999 1.00e-87 297
Msa0480770 AT4G15320.2 30.539 668 326 20 37 602 36 667 7.94e-87 290
Msa0480770 AT5G16910.1 27.683 820 423 20 24 683 297 1106 3.59e-86 294
Msa0480770 AT2G32620.4 29.607 662 361 21 104 684 1 638 8.40e-86 284
Msa0480770 AT3G03050.1 26.488 823 432 17 24 683 294 1106 1.13e-84 290
Msa0480770 AT4G15320.1 29.197 685 319 21 59 602 51 710 7.22e-80 271
Msa0480770 AT4G39350.1 36.649 382 209 7 24 382 277 648 9.72e-71 250
Msa0480770 AT4G39350.1 31.498 327 186 6 390 683 720 1041 3.82e-36 147
Msa0480770 AT2G21770.1 36.111 396 219 8 8 382 271 653 1.72e-70 249
Msa0480770 AT2G21770.1 31.157 337 194 6 380 683 714 1045 1.36e-40 160
Msa0480770 AT5G05170.1 36.436 376 212 5 24 379 259 627 4.21e-70 248
Msa0480770 AT5G05170.1 29.358 327 194 5 390 683 701 1023 5.48e-38 152
Msa0480770 AT5G44030.2 36.148 379 209 9 24 379 244 612 4.77e-69 245
Msa0480770 AT5G44030.2 32.298 322 180 7 396 683 719 1036 9.45e-40 158
Msa0480770 AT5G44030.1 36.148 379 209 9 24 379 215 583 5.78e-69 244
Msa0480770 AT5G44030.1 32.298 322 180 7 396 683 690 1007 1.22e-39 157
Msa0480770 AT5G44030.3 39.016 305 166 6 91 379 4 304 8.06e-65 229
Msa0480770 AT5G44030.3 32.298 322 180 7 396 683 411 728 4.39e-40 158

Find 177 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAAAGTGGGTTCCTTAAT+TGG 0.141463 3_3:-86331817 None:intergenic
CTCTCCTTCATTTGGTTCCT+TGG 0.172567 3_3:+86331691 Msa0480770:CDS
CTCTTTATTGTTTGCCCCTT+TGG 0.176106 3_3:+86333753 Msa0480770:CDS
GGAAGTCGTATTTATCATTT+TGG 0.178591 3_3:-86334190 None:intergenic
CTGCAACTTCGAGAATATTT+TGG 0.180704 3_3:+86333248 Msa0480770:CDS
TAGGCTTCTTGTTCTATTAC+AGG 0.204037 3_3:+86331587 Msa0480770:CDS
TCAAGAGATGGTATTACTTT+TGG 0.207697 3_3:+86332254 Msa0480770:CDS
GATATGAAACTGGCACTAAA+TGG 0.224428 3_3:+86333375 Msa0480770:CDS
ATGGCATATCGAGCTGAATT+TGG 0.256825 3_3:-86332800 None:intergenic
CTGGAGGAACACTACATAAA+TGG 0.257412 3_3:+86334021 Msa0480770:CDS
TGATGATAAGCAACAACTTT+TGG 0.260318 3_3:-86331531 None:intergenic
CCTCAGTTCTGTCTACTAAA+TGG 0.263774 3_3:+86333791 Msa0480770:CDS
TCATCCTCTGGCAATCTCTC+TGG 0.273425 3_3:-86331754 None:intergenic
TTACTAGAAGTCTTCTTAAC+TGG 0.287101 3_3:+86334002 Msa0480770:CDS
TGGAGTTTATAGAGTGATAT+TGG 0.310644 3_3:+86334280 Msa0480770:CDS
TTCTCCCTACATCCTAGTTC+TGG 0.315742 3_3:+86332754 Msa0480770:CDS
TCATCCTCTGCTTTATTAGT+AGG 0.327364 3_3:-86334149 None:intergenic
GCAAGGGATGGACGGGCTTA+AGG 0.330461 3_3:+86333021 Msa0480770:CDS
AAATCATTCTCTCCTTCATT+TGG 0.335597 3_3:+86331683 Msa0480770:CDS
GGCAGAGAAGCAAAAGATTA+AGG 0.344678 3_3:+86332080 Msa0480770:CDS
TTGCAATCTATATGGTTGTT+TGG 0.355256 3_3:+86334082 Msa0480770:CDS
TCAACTACTTGCAATCTATA+TGG 0.355613 3_3:+86334074 Msa0480770:CDS
GGATCAATGAGCAGAGAATC+TGG 0.363474 3_3:+86334042 Msa0480770:CDS
ATGCACTGCAGATCCAATTA+AGG 0.368192 3_3:+86331804 Msa0480770:CDS
GACAAGGAGGATGATATCTT+TGG 0.372812 3_3:-86332839 None:intergenic
CAAAGCAGAAAAGTAGGCCT+TGG 0.385342 3_3:-86332016 None:intergenic
GCTCGAAGAACCTCACTTGT+TGG 0.395209 3_3:+86333343 Msa0480770:CDS
ATATGAAACTGGCACTAAAT+GGG 0.398753 3_3:+86333376 Msa0480770:CDS
ATCACCAGCCCTTCAATGAT+AGG 0.399749 3_3:-86334368 None:intergenic
GAACTGCAAGGTTATCATCT+AGG 0.402438 3_3:+86331459 Msa0480770:five_prime_UTR
CTTGGGAGTTTGCAAGGTGG+TGG 0.404254 3_3:+86331953 Msa0480770:CDS
AATGTGCACCATTATATTAG+AGG 0.404986 3_3:+86334888 Msa0480770:CDS
AGTTGTTGCTTATCATCAAT+AGG 0.407981 3_3:+86331536 Msa0480770:CDS
GGGCAACCTGTATGAACATT+TGG 0.409650 3_3:-86334316 None:intergenic
CCAAGGAACTGTGGCCTAGA+TGG 0.410757 3_3:-86333572 None:intergenic
CAAGGGATGGACGGGCTTAA+GGG 0.413602 3_3:+86333022 Msa0480770:CDS
GCATTGTAACGGATGGAATT+CGG 0.422318 3_3:+86333538 Msa0480770:CDS
GCTTCTTGTAGATATGAAAC+TGG 0.425990 3_3:+86333365 Msa0480770:CDS
CATGTGTATCTTTCAGATGA+TGG 0.428039 3_3:+86331895 Msa0480770:CDS
CTGTGTTACCTTAGGATACA+AGG 0.430250 3_3:-86333819 None:intergenic
GATGCTTTACTGAAGAAAGT+TGG 0.432109 3_3:+86334104 Msa0480770:CDS
GGTTATCATCTAGGGAGAAA+TGG 0.433802 3_3:+86331468 Msa0480770:exon
AAAGCAGAAAAGTAGGCCTT+GGG 0.434065 3_3:-86332015 None:intergenic
GAGTGATATTGGTGGGTGAT+TGG 0.434933 3_3:+86334291 Msa0480770:CDS
AGGAAAGGCCTCTAATATAA+TGG 0.441337 3_3:-86334896 None:intergenic
TGAGGGCTCCAGCTTTGAAA+TGG 0.444970 3_3:-86332599 None:intergenic
CATCCTCTGGCAATCTCTCT+GGG 0.449447 3_3:-86331753 None:intergenic
TCATTGAAGGGCTGGTGATA+AGG 0.449469 3_3:+86334372 Msa0480770:CDS
TACTAATCCAAGGCACTAGA+TGG 0.455870 3_3:+86333621 Msa0480770:CDS
TCCTTGGCCAAGCTTATCGC+TGG 0.456621 3_3:+86331707 Msa0480770:CDS
TCGAGCAATGTATTCCGTCC+TGG 0.457971 3_3:-86333326 None:intergenic
ATAAACTACCCTATCATTGA+AGG 0.469163 3_3:+86334359 Msa0480770:CDS
CTCCTTCATTCCATGGCTCT+AGG 0.469797 3_3:+86331568 Msa0480770:CDS
TGGGAAGACATAACGTGAAA+CGG 0.477193 3_3:-86331734 None:intergenic
AGGCTTCTTGTTCTATTACA+GGG 0.479759 3_3:+86331588 Msa0480770:CDS
CTACCCTATCATTGAAGGGC+TGG 0.482472 3_3:+86334364 Msa0480770:CDS
CAATTTGCAGAGAAAGTATG+AGG 0.482474 3_3:+86332187 Msa0480770:intron
AGTCCCCACCATTTCAAAGC+TGG 0.483676 3_3:+86332591 Msa0480770:CDS
GGGAAGACATAACGTGAAAC+GGG 0.483928 3_3:-86331733 None:intergenic
GGCTCCAGCTTTGAAATGGT+GGG 0.486191 3_3:-86332595 None:intergenic
AGTGATATTGGTGGGTGATT+GGG 0.486626 3_3:+86334292 Msa0480770:CDS
GCAGGGAGCTTGTCATCCTC+TGG 0.486915 3_3:-86331766 None:intergenic
AGTGTTCATCACTTCTAAAG+TGG 0.487025 3_3:-86331830 None:intergenic
CCATCTAGGCCACAGTTCCT+TGG 0.487196 3_3:+86333572 Msa0480770:CDS
ACACATGCTCCTTCATTCCA+TGG 0.492247 3_3:+86331561 Msa0480770:CDS
CGAGCAATGTATTCCGTCCT+GGG 0.494664 3_3:-86333325 None:intergenic
GTATGGTGTGAGGAAGGCTT+GGG 0.495077 3_3:+86331936 Msa0480770:CDS
TATTCTGTACCTTCTGCAGA+AGG 0.499017 3_3:-86331980 None:intergenic
TTGTAATGATAAAACTTGCA+AGG 0.499402 3_3:-86334337 None:intergenic
GAAGGTACAGAATAAAGAAC+AGG 0.500742 3_3:+86331989 Msa0480770:CDS
TGTATGGTGTGAGGAAGGCT+TGG 0.500918 3_3:+86331935 Msa0480770:CDS
CAGAGTACCATCTAGTGCCT+TGG 0.501479 3_3:-86333628 None:intergenic
CAAGGAGCCATGGTAACAAA+TGG 0.502268 3_3:-86331648 None:intergenic
TTGGGACCAAATGTTCATAC+AGG 0.504326 3_3:+86334310 Msa0480770:CDS
CAAAGGGGCAAACAATAAAG+AGG 0.504519 3_3:-86333752 None:intergenic
AGCCTAGAGCCATGGAATGA+AGG 0.506111 3_3:-86331570 None:intergenic
GGATTTATCTTGCATTGTAA+CGG 0.506211 3_3:+86333527 Msa0480770:CDS
GGTGGCTTCCCTTCTGCAGA+AGG 0.510610 3_3:+86331971 Msa0480770:CDS
AACTGCAAGGTTATCATCTA+GGG 0.511603 3_3:+86331460 Msa0480770:five_prime_UTR
TTATCTTGCATTGTAACGGA+TGG 0.511997 3_3:+86333531 Msa0480770:CDS
TGCCAGGAGTAGTGTTTACA+TGG 0.512757 3_3:+86332059 Msa0480770:CDS
GATGGTGGCAAAACACCAAA+GGG 0.515466 3_3:-86333768 None:intergenic
TGCCATGTAAACACTACTCC+TGG 0.515527 3_3:-86332061 None:intergenic
GTAGTCGAAGATTTCCTGAC+TGG 0.518872 3_3:+86333506 Msa0480770:CDS
ACAATCCAGAACTAGGATGT+AGG 0.519220 3_3:-86332759 None:intergenic
CTTAAGGGACCTGTATTGTC+AGG 0.520784 3_3:+86333037 Msa0480770:CDS
TACAATGGCAAGGGATGGAC+GGG 0.522235 3_3:+86333014 Msa0480770:CDS
AATGCAAGATAAATCCAGTC+AGG 0.527019 3_3:-86333520 None:intergenic
TGGAATACCCTTGTATCCTA+AGG 0.531703 3_3:+86333811 Msa0480770:CDS
TATTGAGAGGAAGAGTCCCT+TGG 0.531960 3_3:-86331498 None:intergenic
AAGCATGTACCTGACAATAC+AGG 0.534743 3_3:-86333046 None:intergenic
GAACAAGAAGCCTAGAGCCA+TGG 0.535046 3_3:-86331578 None:intergenic
TTGAACAACTTCAGCTACAA+TGG 0.536811 3_3:+86332999 Msa0480770:intron
TGTAATGATAAAACTTGCAA+GGG 0.538161 3_3:-86334336 None:intergenic
ATTGAGAGGAAGAGTCCCTT+GGG 0.539211 3_3:-86331497 None:intergenic
GGGCTCCAGCTTTGAAATGG+TGG 0.541590 3_3:-86332596 None:intergenic
CAAGGCACTAGATGGTACTC+TGG 0.543521 3_3:+86333629 Msa0480770:CDS
ACTCTCCAAAGCAGAAAAGT+AGG 0.544277 3_3:-86332022 None:intergenic
CAATCCAGAACTAGGATGTA+GGG 0.544829 3_3:-86332758 None:intergenic
ATGAAAAGGGTATCATTGTA+CGG 0.545021 3_3:+86333073 Msa0480770:CDS
CTCACACCATACAGAGTCAT+GGG 0.545146 3_3:-86331925 None:intergenic
ACATGTCACAATCCAGAACT+AGG 0.545632 3_3:-86332766 None:intergenic
GGAAGGCTTGGGAGTTTGCA+AGG 0.546262 3_3:+86331947 Msa0480770:CDS
TACGGAAATCAAGCGAATGA+AGG 0.548147 3_3:+86333091 Msa0480770:CDS
CGGGACGCCAGCGATAAGCT+TGG 0.548345 3_3:-86331714 None:intergenic
ATGTGTATCTTTCAGATGAT+GGG 0.551013 3_3:+86331896 Msa0480770:CDS
CTACAATGGCAAGGGATGGA+CGG 0.551068 3_3:+86333013 Msa0480770:CDS
AAATATGTTGATTGTGAGGA+GGG 0.553265 3_3:-86334246 None:intergenic
TCACCAGCCCTTCAATGATA+GGG 0.553988 3_3:-86334367 None:intergenic
CTCGAAACATAGACAAGTTG+TGG 0.554608 3_3:-86332552 None:intergenic
AGGATGATATCTTTGGATCA+AGG 0.554905 3_3:-86332832 None:intergenic
AATATTCTCGAAGTTGCAGC+AGG 0.557617 3_3:-86333244 None:intergenic
CATATGAACACATCAACAGC+AGG 0.558578 3_3:-86331784 None:intergenic
ATTGTGAGGAGGGCAAGCAT+TGG 0.559251 3_3:-86334236 None:intergenic
CTAGAAGTCTTCTTAACTGG+AGG 0.559844 3_3:+86334005 Msa0480770:CDS
GGATGGTGGCAAAACACCAA+AGG 0.560347 3_3:-86333769 None:intergenic
ATGGCCGTACAAGGACATTG+AGG 0.561723 3_3:-86332617 None:intergenic
TTGAATGATGTACTAATCCA+AGG 0.561797 3_3:+86333611 Msa0480770:CDS
GACTCTGTATGGTGTGAGGA+AGG 0.567745 3_3:+86331930 Msa0480770:CDS
TGGCCGTACAAGGACATTGA+GGG 0.568429 3_3:-86332616 None:intergenic
AGATCATTCATCAGTCATTG+AGG 0.572393 3_3:+86332277 Msa0480770:CDS
CTAATGTTGTGAAATTTCTG+AGG 0.573072 3_3:-86332875 None:intergenic
TTGGCCAAGGAACCAAATGA+AGG 0.575063 3_3:-86331695 None:intergenic
CCTCACACCATACAGAGTCA+TGG 0.580155 3_3:-86331926 None:intergenic
AGTAATACCATCTCTTGAGA+AGG 0.580252 3_3:-86332249 None:intergenic
AGAAGATATCATTGATGATG+TGG 0.580750 3_3:+86332515 Msa0480770:CDS
GACAAAATATGTTGATTGTG+AGG 0.583493 3_3:-86334250 None:intergenic
GATGAGGCCTTCTCAAGAGA+TGG 0.584597 3_3:+86332242 Msa0480770:CDS
GTGTTCATCACTTCTAAAGT+GGG 0.585414 3_3:-86331829 None:intergenic
GCTCCAGCTTTGAAATGGTG+GGG 0.590422 3_3:-86332594 None:intergenic
GGGGAAGCCATTTGTTACCA+TGG 0.592373 3_3:+86331641 Msa0480770:CDS
AGAAACATCAAGGAACTGCA+AGG 0.593626 3_3:+86331447 None:intergenic
CAACTTCAGCTACAATGGCA+AGG 0.607668 3_3:+86333004 Msa0480770:intron
TGGACATGGCAGGTATTGAG+AGG 0.609066 3_3:-86331511 None:intergenic
GCCAGCGATAAGCTTGGCCA+AGG 0.610444 3_3:-86331708 None:intergenic
CAAGGGACGCATTTCACAGT+CGG 0.610991 3_3:+86334400 Msa0480770:CDS
AAAGGGGCAAACAATAAAGA+GGG 0.612126 3_3:-86333751 None:intergenic
TAGACAGAACTGAGGGATGG+TGG 0.613347 3_3:-86333783 None:intergenic
CATTTAGTAGACAGAACTGA+GGG 0.613491 3_3:-86333790 None:intergenic
TGAAGGGCTGGTGATAAGGA+AGG 0.613741 3_3:+86334376 Msa0480770:CDS
TACACATGAATCTTCTGTTG+AGG 0.617007 3_3:-86331880 None:intergenic
TCAGCTACAATGGCAAGGGA+TGG 0.617186 3_3:+86333009 Msa0480770:intron
AAAATATGTTGATTGTGAGG+AGG 0.617494 3_3:-86334247 None:intergenic
TAAACTACCCTATCATTGAA+GGG 0.618147 3_3:+86334360 Msa0480770:CDS
CTTACCTACTAATAAAGCAG+AGG 0.620480 3_3:+86334145 Msa0480770:CDS
TATGAAACTGGCACTAAATG+GGG 0.620691 3_3:+86333377 Msa0480770:CDS
ATTCTGTACCTTCTGCAGAA+GGG 0.622468 3_3:-86331979 None:intergenic
AGAGACATTCAGAAAAGATG+AGG 0.623555 3_3:+86332226 Msa0480770:CDS
TGTGTTACCTTAGGATACAA+GGG 0.624805 3_3:-86333818 None:intergenic
TTTCCAAGACCAAGAAAACA+GGG 0.624831 3_3:+86331621 Msa0480770:CDS
AACTTCAGCTACAATGGCAA+GGG 0.624923 3_3:+86333005 Msa0480770:intron
GTTTATAGAGTGATATTGGT+GGG 0.628743 3_3:+86334284 Msa0480770:CDS
AGTTTATAGAGTGATATTGG+TGG 0.632616 3_3:+86334283 Msa0480770:CDS
GGAGAAATGGAGGTAACCCA+AGG 0.634770 3_3:+86331481 Msa0480770:exon
AATAAAGAACAGGTGCCCCA+AGG 0.644833 3_3:+86331999 Msa0480770:CDS
TTGAGGATAATCTAGTGCCA+TGG 0.650068 3_3:-86331863 None:intergenic
TGGATCAAGGTGAAAACACA+TGG 0.655681 3_3:-86332819 None:intergenic
CTACAAGAAGCCAACAAGTG+AGG 0.656944 3_3:-86333353 None:intergenic
GCTGGTGATAAGGAAGGACA+AGG 0.659987 3_3:+86334382 Msa0480770:CDS
AATTTGTCGTAGCTGTACCA+AGG 0.662023 3_3:-86333589 None:intergenic
TAGTAGACAGAACTGAGGGA+TGG 0.662046 3_3:-86333786 None:intergenic
GAGAAATGGAGGTAACCCAA+GGG 0.667623 3_3:+86331482 Msa0480770:exon
AGGAAATTGAACAAAAGACA+AGG 0.668900 3_3:-86332855 None:intergenic
TATCATCTAGGGAGAAATGG+AGG 0.679190 3_3:+86331471 Msa0480770:exon
CCATTTAGTAGACAGAACTG+AGG 0.684834 3_3:-86333791 None:intergenic
CCATGACTCTGTATGGTGTG+AGG 0.687665 3_3:+86331926 Msa0480770:CDS
GTAGCTGTACCAAGGAACTG+TGG 0.688487 3_3:-86333581 None:intergenic
CTTCCCAGAGAGATTGCCAG+AGG 0.691580 3_3:+86331750 Msa0480770:CDS
TCACACCATACAGAGTCATG+GGG 0.693106 3_3:-86331924 None:intergenic
AGGCTTGGGAGTTTGCAAGG+TGG 0.698000 3_3:+86331950 Msa0480770:CDS
TTCCAAGACCAAGAAAACAG+GGG 0.702380 3_3:+86331622 Msa0480770:CDS
CTGGTGATAAGGAAGGACAA+GGG 0.707930 3_3:+86334383 Msa0480770:CDS
AAGCAGAAAAGTAGGCCTTG+GGG 0.718114 3_3:-86332014 None:intergenic
AAATTGAACAAAAGACAAGG+AGG 0.720972 3_3:-86332852 None:intergenic
ATATGAACACATCAACAGCA+GGG 0.739860 3_3:-86331783 None:intergenic
ATGGTGGCAAAACACCAAAG+GGG 0.740329 3_3:-86333767 None:intergenic
CACACCATACAGAGTCATGG+GGG 0.754927 3_3:-86331923 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAGATGATAAAATA+TGG - chr3_3:86333954-86333973 None:intergenic 10.0%
!!! CAAGTTTTGTATATATACTT+TGG - chr3_3:86332654-86332673 None:intergenic 20.0%
!!! TACATGCTTTTATATGAAAA+GGG + chr3_3:86333060-86333079 Msa0480770:CDS 20.0%
!! TATGTTAGTTCATAACATAA+AGG - chr3_3:86333187-86333206 None:intergenic 20.0%
!!! ACACATGTTTTTTTTTTGAA+GGG - chr3_3:86334575-86334594 None:intergenic 20.0%
!!! AACACATGTTTTTTTTTTGA+AGG - chr3_3:86334576-86334595 None:intergenic 20.0%
!! TCAAAAAAAAAACATGTGTT+TGG + chr3_3:86334576-86334595 Msa0480770:intron 20.0%
!! ACCTCAAATCAATATTATTT+AGG - chr3_3:86334838-86334857 None:intergenic 20.0%
!! ACATTTTATCTGAATTTTGC+AGG + chr3_3:86332485-86332504 Msa0480770:intron 25.0%
!! TATATACTTTGGAAGATAGA+AGG - chr3_3:86332643-86332662 None:intergenic 25.0%
!! GTACATGCTTTTATATGAAA+AGG + chr3_3:86333059-86333078 Msa0480770:CDS 25.0%
!!! CTGTTCTGAGTTTTAAATTT+AGG + chr3_3:86333212-86333231 Msa0480770:intron 25.0%
!!! TTCTGAGTTTTAAATTTAGG+AGG + chr3_3:86333215-86333234 Msa0480770:intron 25.0%
!!! TCTGAGTTTTAAATTTAGGA+GGG + chr3_3:86333216-86333235 Msa0480770:intron 25.0%
!! GTATAATTTTGAACTGTTTC+AGG + chr3_3:86333463-86333482 Msa0480770:intron 25.0%
! TTTAATATCTGTGTTACCTT+AGG - chr3_3:86333830-86333849 None:intergenic 25.0%
!!! TCTTGAACATTTTTTTTGAC+AGG + chr3_3:86333920-86333939 Msa0480770:intron 25.0%
!!! ACATTTTTTTTGACAGGTTT+CGG + chr3_3:86333926-86333945 Msa0480770:intron 25.0%
! TGTAATGATAAAACTTGCAA+GGG - chr3_3:86334339-86334358 None:intergenic 25.0%
! TTGTAATGATAAAACTTGCA+AGG - chr3_3:86334340-86334359 None:intergenic 25.0%
!! ACCTCTAATCAAATTTTTCA+CGG + chr3_3:86334623-86334642 Msa0480770:intron 25.0%
! ACAACCCAAATAAAAAGATT+TGG + chr3_3:86334704-86334723 Msa0480770:intron 25.0%
!!! CTGTCCAAATCTTTTTATTT+GGG - chr3_3:86334711-86334730 None:intergenic 25.0%
!! TCTGTCCAAATCTTTTTATT+TGG - chr3_3:86334712-86334731 None:intergenic 25.0%
!!! GCCTAAATAATATTGATTTG+AGG + chr3_3:86334834-86334853 Msa0480770:intron 25.0%
! TGATGATAAGCAACAACTTT+TGG - chr3_3:86331534-86331553 None:intergenic 30.0%
! AGTTGTTGCTTATCATCAAT+AGG + chr3_3:86331536-86331555 Msa0480770:CDS 30.0%
!! TGATTTCTGAAGCAAAAACA+AGG - chr3_3:86331669-86331688 None:intergenic 30.0%
AAATCATTCTCTCCTTCATT+TGG + chr3_3:86331683-86331702 Msa0480770:CDS 30.0%
ATGTGTATCTTTCAGATGAT+GGG + chr3_3:86331896-86331915 Msa0480770:CDS 30.0%
! GTGATAATAATGATTTTGCC+AGG + chr3_3:86332043-86332062 Msa0480770:CDS 30.0%
ATGTATGTTCTGCAATCTAA+AGG - chr3_3:86332137-86332156 None:intergenic 30.0%
! TCAAGAGATGGTATTACTTT+TGG + chr3_3:86332254-86332273 Msa0480770:CDS 30.0%
AAACTCAAATTATTGCTGTC+AGG - chr3_3:86332360-86332379 None:intergenic 30.0%
!! AGAAGATATCATTGATGATG+TGG + chr3_3:86332515-86332534 Msa0480770:CDS 30.0%
AAATTGAACAAAAGACAAGG+AGG - chr3_3:86332855-86332874 None:intergenic 30.0%
AGGAAATTGAACAAAAGACA+AGG - chr3_3:86332858-86332877 None:intergenic 30.0%
CTAATGTTGTGAAATTTCTG+AGG - chr3_3:86332878-86332897 None:intergenic 30.0%
ACTGCAAAGATTTAATCTCA+AGG - chr3_3:86332964-86332983 None:intergenic 30.0%
!! ATGAAAAGGGTATCATTGTA+CGG + chr3_3:86333073-86333092 Msa0480770:CDS 30.0%
ATATGAAACTGGCACTAAAT+GGG + chr3_3:86333376-86333395 Msa0480770:CDS 30.0%
!! AATTTTGAACTGTTTCAGGT+AGG + chr3_3:86333467-86333486 Msa0480770:intron 30.0%
GGATTTATCTTGCATTGTAA+CGG + chr3_3:86333527-86333546 Msa0480770:CDS 30.0%
TTGAATGATGTACTAATCCA+AGG + chr3_3:86333611-86333630 Msa0480770:CDS 30.0%
! ATCTGAGATTGAAGTGAAAA+CGG - chr3_3:86333860-86333879 None:intergenic 30.0%
TTACTAGAAGTCTTCTTAAC+TGG + chr3_3:86334002-86334021 Msa0480770:CDS 30.0%
TCAACTACTTGCAATCTATA+TGG + chr3_3:86334074-86334093 Msa0480770:CDS 30.0%
TTGCAATCTATATGGTTGTT+TGG + chr3_3:86334082-86334101 Msa0480770:CDS 30.0%
! GGAAGTCGTATTTATCATTT+TGG - chr3_3:86334193-86334212 None:intergenic 30.0%
CTATAAAAATGTTCGATGCT+CGG - chr3_3:86334214-86334233 None:intergenic 30.0%
! AAATATGTTGATTGTGAGGA+GGG - chr3_3:86334249-86334268 None:intergenic 30.0%
! AAAATATGTTGATTGTGAGG+AGG - chr3_3:86334250-86334269 None:intergenic 30.0%
! GACAAAATATGTTGATTGTG+AGG - chr3_3:86334253-86334272 None:intergenic 30.0%
! CACAATCAACATATTTTGTC+TGG + chr3_3:86334253-86334272 Msa0480770:CDS 30.0%
! AACATATTTTGTCTGGTAGT+TGG + chr3_3:86334260-86334279 Msa0480770:CDS 30.0%
TGGAGTTTATAGAGTGATAT+TGG + chr3_3:86334280-86334299 Msa0480770:CDS 30.0%
AGTTTATAGAGTGATATTGG+TGG + chr3_3:86334283-86334302 Msa0480770:CDS 30.0%
GTTTATAGAGTGATATTGGT+GGG + chr3_3:86334284-86334303 Msa0480770:CDS 30.0%
ATAAACTACCCTATCATTGA+AGG + chr3_3:86334359-86334378 Msa0480770:CDS 30.0%
TAAACTACCCTATCATTGAA+GGG + chr3_3:86334360-86334379 Msa0480770:CDS 30.0%
! AATGCCATTTAACATGTGTT+TGG + chr3_3:86334547-86334566 Msa0480770:intron 30.0%
TCCGTGAAAAATTTGATTAG+AGG - chr3_3:86334627-86334646 None:intergenic 30.0%
! CTAATCAAATTTTTCACGGA+TGG + chr3_3:86334627-86334646 Msa0480770:intron 30.0%
!! TCTTCAATGACATGTTTTTG+CGG - chr3_3:86334672-86334691 None:intergenic 30.0%
AACTGCAAGGTTATCATCTA+GGG + chr3_3:86331460-86331479 Msa0480770:five_prime_UTR 35.0%
! TAAGCAACAACTTTTGGACA+TGG - chr3_3:86331528-86331547 None:intergenic 35.0%
TAGGCTTCTTGTTCTATTAC+AGG + chr3_3:86331587-86331606 Msa0480770:CDS 35.0%
AGGCTTCTTGTTCTATTACA+GGG + chr3_3:86331588-86331607 Msa0480770:CDS 35.0%
! TTTTCCAAGACCAAGAAAAC+AGG + chr3_3:86331620-86331639 Msa0480770:CDS 35.0%
TTTCCAAGACCAAGAAAACA+GGG + chr3_3:86331621-86331640 Msa0480770:CDS 35.0%
ATATGAACACATCAACAGCA+GGG - chr3_3:86331786-86331805 None:intergenic 35.0%
! TCTAAAGTGGGTTCCTTAAT+TGG - chr3_3:86331820-86331839 None:intergenic 35.0%
!! GTGTTCATCACTTCTAAAGT+GGG - chr3_3:86331832-86331851 None:intergenic 35.0%
! AGTGTTCATCACTTCTAAAG+TGG - chr3_3:86331833-86331852 None:intergenic 35.0%
! GAACACTGTTTTATCATCCA+TGG + chr3_3:86331846-86331865 Msa0480770:CDS 35.0%
TACACATGAATCTTCTGTTG+AGG - chr3_3:86331883-86331902 None:intergenic 35.0%
CATGTGTATCTTTCAGATGA+TGG + chr3_3:86331895-86331914 Msa0480770:CDS 35.0%
! GAAGGTACAGAATAAAGAAC+AGG + chr3_3:86331989-86332008 Msa0480770:CDS 35.0%
! CAATTTGCAGAGAAAGTATG+AGG + chr3_3:86332187-86332206 Msa0480770:intron 35.0%
AGAGACATTCAGAAAAGATG+AGG + chr3_3:86332226-86332245 Msa0480770:CDS 35.0%
AGTAATACCATCTCTTGAGA+AGG - chr3_3:86332252-86332271 None:intergenic 35.0%
AGATCATTCATCAGTCATTG+AGG + chr3_3:86332277-86332296 Msa0480770:CDS 35.0%
TGTCTAGTATAAAGTGCAGA+TGG - chr3_3:86332466-86332485 None:intergenic 35.0%
! TACTTTGGAAGATAGAAGGA+TGG - chr3_3:86332639-86332658 None:intergenic 35.0%
AGGATGATATCTTTGGATCA+AGG - chr3_3:86332835-86332854 None:intergenic 35.0%
TTGAACAACTTCAGCTACAA+TGG + chr3_3:86332999-86333018 Msa0480770:intron 35.0%
! TGTTTTACAAGCAACCTTGT+GGG - chr3_3:86333123-86333142 None:intergenic 35.0%
! CTGCAACTTCGAGAATATTT+TGG + chr3_3:86333248-86333267 Msa0480770:CDS 35.0%
!!! TACACAAGAGTTTTTTTCCC+AGG + chr3_3:86333308-86333327 Msa0480770:CDS 35.0%
GCTTCTTGTAGATATGAAAC+TGG + chr3_3:86333365-86333384 Msa0480770:CDS 35.0%
GATATGAAACTGGCACTAAA+TGG + chr3_3:86333375-86333394 Msa0480770:CDS 35.0%
TATGAAACTGGCACTAAATG+GGG + chr3_3:86333377-86333396 Msa0480770:CDS 35.0%
AATGCAAGATAAATCCAGTC+AGG - chr3_3:86333523-86333542 None:intergenic 35.0%
! TTATCTTGCATTGTAACGGA+TGG + chr3_3:86333531-86333550 Msa0480770:CDS 35.0%
!! TACTCTGGTTTGTTCGAAAA+CGG + chr3_3:86333644-86333663 Msa0480770:intron 35.0%
AAAGGGGCAAACAATAAAGA+GGG - chr3_3:86333754-86333773 None:intergenic 35.0%
CATTTAGTAGACAGAACTGA+GGG - chr3_3:86333793-86333812 None:intergenic 35.0%
TGTGTTACCTTAGGATACAA+GGG - chr3_3:86333821-86333840 None:intergenic 35.0%
GATGCTTTACTGAAGAAAGT+TGG + chr3_3:86334104-86334123 Msa0480770:CDS 35.0%
CTTACCTACTAATAAAGCAG+AGG + chr3_3:86334145-86334164 Msa0480770:CDS 35.0%
! TCATCCTCTGCTTTATTAGT+AGG - chr3_3:86334152-86334171 None:intergenic 35.0%
GGTTCCAAACACATGTTAAA+TGG - chr3_3:86334554-86334573 None:intergenic 35.0%
! TTTTGCGGTCATAAAACATC+TGG - chr3_3:86334657-86334676 None:intergenic 35.0%
TGTCATTGAAGAGTGATACT+TGG + chr3_3:86334680-86334699 Msa0480770:intron 35.0%
GAACTGCAAGGTTATCATCT+AGG + chr3_3:86331459-86331478 Msa0480770:five_prime_UTR 40.0%
GGTTATCATCTAGGGAGAAA+TGG + chr3_3:86331468-86331487 Msa0480770:exon 40.0%
TATCATCTAGGGAGAAATGG+AGG + chr3_3:86331471-86331490 Msa0480770:exon 40.0%
TTCCAAGACCAAGAAAACAG+GGG + chr3_3:86331622-86331641 Msa0480770:CDS 40.0%
TGGGAAGACATAACGTGAAA+CGG - chr3_3:86331737-86331756 None:intergenic 40.0%
CATATGAACACATCAACAGC+AGG - chr3_3:86331787-86331806 None:intergenic 40.0%
ATGCACTGCAGATCCAATTA+AGG + chr3_3:86331804-86331823 Msa0480770:CDS 40.0%
TTGAGGATAATCTAGTGCCA+TGG - chr3_3:86331866-86331885 None:intergenic 40.0%
ATTCTGTACCTTCTGCAGAA+GGG - chr3_3:86331982-86332001 None:intergenic 40.0%
TATTCTGTACCTTCTGCAGA+AGG - chr3_3:86331983-86332002 None:intergenic 40.0%
AAAGCAGAAAAGTAGGCCTT+GGG - chr3_3:86332018-86332037 None:intergenic 40.0%
ACTCTCCAAAGCAGAAAAGT+AGG - chr3_3:86332025-86332044 None:intergenic 40.0%
GGCAGAGAAGCAAAAGATTA+AGG + chr3_3:86332080-86332099 Msa0480770:CDS 40.0%
CTCGAAACATAGACAAGTTG+TGG - chr3_3:86332555-86332574 None:intergenic 40.0%
CAATCCAGAACTAGGATGTA+GGG - chr3_3:86332761-86332780 None:intergenic 40.0%
ACAATCCAGAACTAGGATGT+AGG - chr3_3:86332762-86332781 None:intergenic 40.0%
ACATGTCACAATCCAGAACT+AGG - chr3_3:86332769-86332788 None:intergenic 40.0%
ATGGCATATCGAGCTGAATT+TGG - chr3_3:86332803-86332822 None:intergenic 40.0%
TGGATCAAGGTGAAAACACA+TGG - chr3_3:86332822-86332841 None:intergenic 40.0%
GACAAGGAGGATGATATCTT+TGG - chr3_3:86332842-86332861 None:intergenic 40.0%
AACTTCAGCTACAATGGCAA+GGG + chr3_3:86333005-86333024 Msa0480770:intron 40.0%
AAGCATGTACCTGACAATAC+AGG - chr3_3:86333049-86333068 None:intergenic 40.0%
TACGGAAATCAAGCGAATGA+AGG + chr3_3:86333091-86333110 Msa0480770:CDS 40.0%
!! AATGAAGGTATTGACCCACA+AGG + chr3_3:86333106-86333125 Msa0480770:intron 40.0%
! GTGTTTTACAAGCAACCTTG+TGG - chr3_3:86333124-86333143 None:intergenic 40.0%
AATATTCTCGAAGTTGCAGC+AGG - chr3_3:86333247-86333266 None:intergenic 40.0%
!!! CAAGAGTTTTTTTCCCAGGA+CGG + chr3_3:86333312-86333331 Msa0480770:CDS 40.0%
!! GCATTGTAACGGATGGAATT+CGG + chr3_3:86333538-86333557 Msa0480770:CDS 40.0%
AATTTGTCGTAGCTGTACCA+AGG - chr3_3:86333592-86333611 None:intergenic 40.0%
! TACTAATCCAAGGCACTAGA+TGG + chr3_3:86333621-86333640 Msa0480770:CDS 40.0%
!! ACTCTGGTTTGTTCGAAAAC+GGG + chr3_3:86333645-86333664 Msa0480770:intron 40.0%
TTAAAGGCCCATATATGAGG+GGG - chr3_3:86333685-86333704 None:intergenic 40.0%
CTTAAAGGCCCATATATGAG+GGG - chr3_3:86333686-86333705 None:intergenic 40.0%
CCTTAAAGGCCCATATATGA+GGG - chr3_3:86333687-86333706 None:intergenic 40.0%
TCCTTAAAGGCCCATATATG+AGG - chr3_3:86333688-86333707 None:intergenic 40.0%
!! AAACACAGACTTTGGAGTAG+TGG - chr3_3:86333713-86333732 None:intergenic 40.0%
CAAAGGGGCAAACAATAAAG+AGG - chr3_3:86333755-86333774 None:intergenic 40.0%
CTCTTTATTGTTTGCCCCTT+TGG + chr3_3:86333753-86333772 Msa0480770:CDS 40.0%
CCATTTAGTAGACAGAACTG+AGG - chr3_3:86333794-86333813 None:intergenic 40.0%
CCTCAGTTCTGTCTACTAAA+TGG + chr3_3:86333791-86333810 Msa0480770:CDS 40.0%
TGGAATACCCTTGTATCCTA+AGG + chr3_3:86333811-86333830 Msa0480770:CDS 40.0%
CTGTGTTACCTTAGGATACA+AGG - chr3_3:86333822-86333841 None:intergenic 40.0%
GAGATTGAAGTGAAAACGGT+AGG - chr3_3:86333856-86333875 None:intergenic 40.0%
CTAGAAGTCTTCTTAACTGG+AGG + chr3_3:86334005-86334024 Msa0480770:CDS 40.0%
CTGGAGGAACACTACATAAA+TGG + chr3_3:86334021-86334040 Msa0480770:CDS 40.0%
! AGTGATATTGGTGGGTGATT+GGG + chr3_3:86334292-86334311 Msa0480770:CDS 40.0%
TTGGGACCAAATGTTCATAC+AGG + chr3_3:86334310-86334329 Msa0480770:CDS 40.0%
! GATTAGAGGTGCAGAAGATT+GGG - chr3_3:86334613-86334632 None:intergenic 40.0%
! TGATTAGAGGTGCAGAAGAT+TGG - chr3_3:86334614-86334633 None:intergenic 40.0%
GAGAAATGGAGGTAACCCAA+GGG + chr3_3:86331482-86331501 Msa0480770:exon 45.0%
ATTGAGAGGAAGAGTCCCTT+GGG - chr3_3:86331500-86331519 None:intergenic 45.0%
TATTGAGAGGAAGAGTCCCT+TGG - chr3_3:86331501-86331520 None:intergenic 45.0%
! CAACAACTTTTGGACATGGC+AGG - chr3_3:86331524-86331543 None:intergenic 45.0%
ACACATGCTCCTTCATTCCA+TGG + chr3_3:86331561-86331580 Msa0480770:CDS 45.0%
! TTCCCCTGTTTTCTTGGTCT+TGG - chr3_3:86331627-86331646 None:intergenic 45.0%
! AATGGCTTCCCCTGTTTTCT+TGG - chr3_3:86331633-86331652 None:intergenic 45.0%
CAAGGAGCCATGGTAACAAA+TGG - chr3_3:86331651-86331670 None:intergenic 45.0%
GAAGCAAAAACAAGGAGCCA+TGG - chr3_3:86331661-86331680 None:intergenic 45.0%
! CTCTCCTTCATTTGGTTCCT+TGG + chr3_3:86331691-86331710 Msa0480770:CDS 45.0%
TTGGCCAAGGAACCAAATGA+AGG - chr3_3:86331698-86331717 None:intergenic 45.0%
GGGAAGACATAACGTGAAAC+GGG - chr3_3:86331736-86331755 None:intergenic 45.0%
TCACACCATACAGAGTCATG+GGG - chr3_3:86331927-86331946 None:intergenic 45.0%
CTCACACCATACAGAGTCAT+GGG - chr3_3:86331928-86331947 None:intergenic 45.0%
AATAAAGAACAGGTGCCCCA+AGG + chr3_3:86331999-86332018 Msa0480770:CDS 45.0%
AAGCAGAAAAGTAGGCCTTG+GGG - chr3_3:86332017-86332036 None:intergenic 45.0%
CAAAGCAGAAAAGTAGGCCT+TGG - chr3_3:86332019-86332038 None:intergenic 45.0%
!! CAAGGCCTACTTTTCTGCTT+TGG + chr3_3:86332017-86332036 Msa0480770:CDS 45.0%
TGCCAGGAGTAGTGTTTACA+TGG + chr3_3:86332059-86332078 Msa0480770:CDS 45.0%
TGCCATGTAAACACTACTCC+TGG - chr3_3:86332064-86332083 None:intergenic 45.0%
TTCTCCCTACATCCTAGTTC+TGG + chr3_3:86332754-86332773 Msa0480770:CDS 45.0%
CAACTTCAGCTACAATGGCA+AGG + chr3_3:86333004-86333023 Msa0480770:intron 45.0%
CTTAAGGGACCTGTATTGTC+AGG + chr3_3:86333037-86333056 Msa0480770:CDS 45.0%
CTACAAGAAGCCAACAAGTG+AGG - chr3_3:86333356-86333375 None:intergenic 45.0%
GTAGTCGAAGATTTCCTGAC+TGG + chr3_3:86333506-86333525 Msa0480770:CDS 45.0%
GTTCGAAAACGGGATAAGCA+AGG + chr3_3:86333655-86333674 Msa0480770:intron 45.0%
AAGGTTTGCCCCCTCATATA+TGG + chr3_3:86333674-86333693 Msa0480770:intron 45.0%
AGGTTTGCCCCCTCATATAT+GGG + chr3_3:86333675-86333694 Msa0480770:intron 45.0%
CCCTCATATATGGGCCTTTA+AGG + chr3_3:86333684-86333703 Msa0480770:intron 45.0%
TGGAGTAGTGGCATCCTTAA+AGG - chr3_3:86333701-86333720 None:intergenic 45.0%
GCTCTGCAAAACACAGACTT+TGG - chr3_3:86333721-86333740 None:intergenic 45.0%
ATGGTGGCAAAACACCAAAG+GGG - chr3_3:86333770-86333789 None:intergenic 45.0%
! GATGGTGGCAAAACACCAAA+GGG - chr3_3:86333771-86333790 None:intergenic 45.0%
TAGTAGACAGAACTGAGGGA+TGG - chr3_3:86333789-86333808 None:intergenic 45.0%
GGATCAATGAGCAGAGAATC+TGG + chr3_3:86334042-86334061 Msa0480770:CDS 45.0%
! GAGTGATATTGGTGGGTGAT+TGG + chr3_3:86334291-86334310 Msa0480770:CDS 45.0%
GGGCAACCTGTATGAACATT+TGG - chr3_3:86334319-86334338 None:intergenic 45.0%
TCACCAGCCCTTCAATGATA+GGG - chr3_3:86334370-86334389 None:intergenic 45.0%
ATCACCAGCCCTTCAATGAT+AGG - chr3_3:86334371-86334390 None:intergenic 45.0%
! TCATTGAAGGGCTGGTGATA+AGG + chr3_3:86334372-86334391 Msa0480770:CDS 45.0%
CTGGTGATAAGGAAGGACAA+GGG + chr3_3:86334383-86334402 Msa0480770:CDS 45.0%
GGAGAAATGGAGGTAACCCA+AGG + chr3_3:86331481-86331500 Msa0480770:exon 50.0%
!! TGGACATGGCAGGTATTGAG+AGG - chr3_3:86331514-86331533 None:intergenic 50.0%
CTCCTTCATTCCATGGCTCT+AGG + chr3_3:86331568-86331587 Msa0480770:CDS 50.0%
AGCCTAGAGCCATGGAATGA+AGG - chr3_3:86331573-86331592 None:intergenic 50.0%
GAACAAGAAGCCTAGAGCCA+TGG - chr3_3:86331581-86331600 None:intergenic 50.0%
! GGGGAAGCCATTTGTTACCA+TGG + chr3_3:86331641-86331660 Msa0480770:CDS 50.0%
CATCCTCTGGCAATCTCTCT+GGG - chr3_3:86331756-86331775 None:intergenic 50.0%
TCATCCTCTGGCAATCTCTC+TGG - chr3_3:86331757-86331776 None:intergenic 50.0%
TGTTCCCCCATGACTCTGTA+TGG + chr3_3:86331919-86331938 Msa0480770:CDS 50.0%
CACACCATACAGAGTCATGG+GGG - chr3_3:86331926-86331945 None:intergenic 50.0%
CCTCACACCATACAGAGTCA+TGG - chr3_3:86331929-86331948 None:intergenic 50.0%
CCATGACTCTGTATGGTGTG+AGG + chr3_3:86331926-86331945 Msa0480770:CDS 50.0%
GACTCTGTATGGTGTGAGGA+AGG + chr3_3:86331930-86331949 Msa0480770:CDS 50.0%
TGTATGGTGTGAGGAAGGCT+TGG + chr3_3:86331935-86331954 Msa0480770:CDS 50.0%
GTATGGTGTGAGGAAGGCTT+GGG + chr3_3:86331936-86331955 Msa0480770:CDS 50.0%
GATGAGGCCTTCTCAAGAGA+TGG + chr3_3:86332242-86332261 Msa0480770:CDS 50.0%
AGTCCCCACCATTTCAAAGC+TGG + chr3_3:86332591-86332610 Msa0480770:CDS 50.0%
!! GCTCCAGCTTTGAAATGGTG+GGG - chr3_3:86332597-86332616 None:intergenic 50.0%
!! GGCTCCAGCTTTGAAATGGT+GGG - chr3_3:86332598-86332617 None:intergenic 50.0%
!! TGAGGGCTCCAGCTTTGAAA+TGG - chr3_3:86332602-86332621 None:intergenic 50.0%
GAGCCCTCAATGTCCTTGTA+CGG + chr3_3:86332613-86332632 Msa0480770:intron 50.0%
TGGCCGTACAAGGACATTGA+GGG - chr3_3:86332619-86332638 None:intergenic 50.0%
ATGGCCGTACAAGGACATTG+AGG - chr3_3:86332620-86332639 None:intergenic 50.0%
GATAGAAGGATGGCCGTACA+AGG - chr3_3:86332629-86332648 None:intergenic 50.0%
TCAGCTACAATGGCAAGGGA+TGG + chr3_3:86333009-86333028 Msa0480770:intron 50.0%
CTACAATGGCAAGGGATGGA+CGG + chr3_3:86333013-86333032 Msa0480770:CDS 50.0%
TACAATGGCAAGGGATGGAC+GGG + chr3_3:86333014-86333033 Msa0480770:CDS 50.0%
CGAGCAATGTATTCCGTCCT+GGG - chr3_3:86333328-86333347 None:intergenic 50.0%
TCGAGCAATGTATTCCGTCC+TGG - chr3_3:86333329-86333348 None:intergenic 50.0%
GCTCGAAGAACCTCACTTGT+TGG + chr3_3:86333343-86333362 Msa0480770:CDS 50.0%
! CGGTTTTCTGCGAACCATCT+AGG + chr3_3:86333558-86333577 Msa0480770:CDS 50.0%
GTAGCTGTACCAAGGAACTG+TGG - chr3_3:86333584-86333603 None:intergenic 50.0%
! CAGAGTACCATCTAGTGCCT+TGG - chr3_3:86333631-86333650 None:intergenic 50.0%
! CAAGGCACTAGATGGTACTC+TGG + chr3_3:86333629-86333648 Msa0480770:CDS 50.0%
! GGATGGTGGCAAAACACCAA+AGG - chr3_3:86333772-86333791 None:intergenic 50.0%
TAGACAGAACTGAGGGATGG+TGG - chr3_3:86333786-86333805 None:intergenic 50.0%
ATTGTGAGGAGGGCAAGCAT+TGG - chr3_3:86334239-86334258 None:intergenic 50.0%
CTACCCTATCATTGAAGGGC+TGG + chr3_3:86334364-86334383 Msa0480770:CDS 50.0%
! TGAAGGGCTGGTGATAAGGA+AGG + chr3_3:86334376-86334395 Msa0480770:CDS 50.0%
GCTGGTGATAAGGAAGGACA+AGG + chr3_3:86334382-86334401 Msa0480770:CDS 50.0%
CAAGGGACGCATTTCACAGT+CGG + chr3_3:86334400-86334419 Msa0480770:CDS 50.0%
TGCAGAAGATTGGGAGGCTA+TGG - chr3_3:86334604-86334623 None:intergenic 50.0%
! TAGAGGTGCAGAAGATTGGG+AGG - chr3_3:86334610-86334629 None:intergenic 50.0%
TCCTTGGCCAAGCTTATCGC+TGG + chr3_3:86331707-86331726 Msa0480770:CDS 55.0%
CTTCCCAGAGAGATTGCCAG+AGG + chr3_3:86331750-86331769 Msa0480770:CDS 55.0%
GGAAGGCTTGGGAGTTTGCA+AGG + chr3_3:86331947-86331966 Msa0480770:CDS 55.0%
AGGCTTGGGAGTTTGCAAGG+TGG + chr3_3:86331950-86331969 Msa0480770:CDS 55.0%
CTTGGGAGTTTGCAAGGTGG+TGG + chr3_3:86331953-86331972 Msa0480770:CDS 55.0%
!! GGGCTCCAGCTTTGAAATGG+TGG - chr3_3:86332599-86332618 None:intergenic 55.0%
! CAAGGGATGGACGGGCTTAA+GGG + chr3_3:86333022-86333041 Msa0480770:CDS 55.0%
CCAAGGAACTGTGGCCTAGA+TGG - chr3_3:86333575-86333594 None:intergenic 55.0%
CCATCTAGGCCACAGTTCCT+TGG + chr3_3:86333572-86333591 Msa0480770:CDS 55.0%
GCCAGCGATAAGCTTGGCCA+AGG - chr3_3:86331711-86331730 None:intergenic 60.0%
GCAGGGAGCTTGTCATCCTC+TGG - chr3_3:86331769-86331788 None:intergenic 60.0%
GGTGGCTTCCCTTCTGCAGA+AGG + chr3_3:86331971-86331990 Msa0480770:CDS 60.0%
! GCAAGGGATGGACGGGCTTA+AGG + chr3_3:86333021-86333040 Msa0480770:CDS 60.0%
CGGGACGCCAGCGATAAGCT+TGG - chr3_3:86331717-86331736 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 86331458 86334907 86331458 ID=Msa0480770;Name=Msa0480770
chr3_3 mRNA 86331458 86334907 86331458 ID=Msa0480770-mRNA-1;Parent=Msa0480770;Name=Msa0480770-mRNA-1;_AED=0.13;_eAED=0.13;_QI=29|0.77|0.6|0.9|1|1|10|0|701
chr3_3 exon 86331458 86332101 86331458 ID=Msa0480770-mRNA-1:exon:24887;Parent=Msa0480770-mRNA-1
chr3_3 exon 86332197 86332298 86332197 ID=Msa0480770-mRNA-1:exon:24888;Parent=Msa0480770-mRNA-1
chr3_3 exon 86332507 86332629 86332507 ID=Msa0480770-mRNA-1:exon:24889;Parent=Msa0480770-mRNA-1
chr3_3 exon 86332728 86332940 86332728 ID=Msa0480770-mRNA-1:exon:24890;Parent=Msa0480770-mRNA-1
chr3_3 exon 86333013 86333112 86333013 ID=Msa0480770-mRNA-1:exon:24891;Parent=Msa0480770-mRNA-1
chr3_3 exon 86333234 86333406 86333234 ID=Msa0480770-mRNA-1:exon:24892;Parent=Msa0480770-mRNA-1
chr3_3 exon 86333485 86333650 86333485 ID=Msa0480770-mRNA-1:exon:24893;Parent=Msa0480770-mRNA-1
chr3_3 exon 86333738 86333832 86333738 ID=Msa0480770-mRNA-1:exon:24894;Parent=Msa0480770-mRNA-1
chr3_3 exon 86333942 86334421 86333942 ID=Msa0480770-mRNA-1:exon:24895;Parent=Msa0480770-mRNA-1
chr3_3 exon 86334869 86334907 86334869 ID=Msa0480770-mRNA-1:exon:24896;Parent=Msa0480770-mRNA-1
chr3_3 five_prime_UTR 86331458 86331486 86331458 ID=Msa0480770-mRNA-1:five_prime_utr;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86331487 86332101 86331487 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86332197 86332298 86332197 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86332507 86332629 86332507 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86332728 86332940 86332728 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86333013 86333112 86333013 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86333234 86333406 86333234 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86333485 86333650 86333485 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86333738 86333832 86333738 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86333942 86334421 86333942 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
chr3_3 CDS 86334869 86334907 86334869 ID=Msa0480770-mRNA-1:cds;Parent=Msa0480770-mRNA-1
Gene Sequence

>Msa0480770

ATGGAGGTAACCCAAGGGACTCTTCCTCTCAATACCTGCCATGTCCAAAAGTTGTTGCTTATCATCAATAGGTTACACATGCTCCTTCATTCCATGGCTCTAGGCTTCTTGTTCTATTACAGGGTGTGCTTTCTTTTCCAAGACCAAGAAAACAGGGGAAGCCATTTGTTACCATGGCTCCTTGTTTTTGCTTCAGAAATCATTCTCTCCTTCATTTGGTTCCTTGGCCAAGCTTATCGCTGGCGTCCCGTTTCACGTTATGTCTTCCCAGAGAGATTGCCAGAGGATGACAAGCTCCCTGCTGTTGATGTGTTCATATGCACTGCAGATCCAATTAAGGAACCCACTTTAGAAGTGATGAACACTGTTTTATCATCCATGGCACTAGATTATCCTCAACAGAAGATTCATGTGTATCTTTCAGATGATGGGTGTTCCCCCATGACTCTGTATGGTGTGAGGAAGGCTTGGGAGTTTGCAAGGTGGTGGCTTCCCTTCTGCAGAAGGTACAGAATAAAGAACAGGTGCCCCAAGGCCTACTTTTCTGCTTTGGAGAGTGATAATAATGATTTTGCCAGGAGTAGTGTTTACATGGCAGAGAAGCAAAAGATTAAGAGAAAGTATGAGGCTTTTAAAGAAGAGATAGAGACATTCAGAAAAGATGAGGCCTTCTCAAGAGATGGTATTACTTTTGGAGATCATTCATCAGTCATTGAGGTGATGCAAGAAGATATCATTGATGATGTGGATAATGTCAAAATGCCACAACTTGTCTATGTTTCGAGAGAGAGAAAGTCTTCTAGTCCCCACCATTTCAAAGCTGGAGCCCTCAATGTCCTTCTTCGTGTATCTGCTGTGATGAGTAATTCTCCCTACATCCTAGTTCTGGATTGTGACATGTTCTGCAACTATCCAAATTCAGCTCGATATGCCATGTGTTTTCACCTTGATCCAAAGATATCATCCTCCTTGTCTTTTGTTCAATTTCCTCAGAAATTTCACAACATTAGCAAGAAAGACATCTATGACAGTCAGCTGAGATCATTATTTACTCTACAATGGCAAGGGATGGACGGGCTTAAGGGACCTGTATTGTCAGGTACATGCTTTTATATGAAAAGGGTATCATTGTACGGAAATCAAGCGAATGAAGGAGGGACTGACCTGCTGCAACTTCGAGAATATTTTGGTTCATCGAATGAATTCATCAAATCACTTGCTCAAAACTACACAAGAGTTTTTTTCCCAGGACGGAATACATTGCTCGAAGAACCTCACTTGTTGGCTTCTTGTAGATATGAAACTGGCACTAAATGGGGACAAGATGTAGGTTTCTTATACGATAGTGTAGTCGAAGATTTCCTGACTGGATTTATCTTGCATTGTAACGGATGGAATTCGGTTTTCTGCGAACCATCTAGGCCACAGTTCCTTGGTACAGCTACGACAAATTTGAATGATGTACTAATCCAAGGCACTAGATGGTACTCTGAGCTCACATATTTCCCTCTTTATTGTTTGCCCCTTTGGTGTTTTGCCACCATCCCTCAGTTCTGTCTACTAAATGGAATACCCTTGTATCCTAAGGTTTCGGATCCATATTTTATCATCTTTTTATTCATATTTTTATCATCTCTTTCAAAACATTTACTAGAAGTCTTCTTAACTGGAGGAACACTACATAAATGGATCAATGAGCAGAGAATCTGGATGATGAAATCAACTACTTGCAATCTATATGGTTGTTTGGATGCTTTACTGAAGAAAGTTGGAATAAGACAAGCTAATTTCTTACCTACTAATAAAGCAGAGGATGATGAACAAACTCTGCTATACCAAAATGATAAATACGACTTCCGAGCATCGAACATTTTTATAGTTCCAATGCTTGCCCTCCTCACAATCAACATATTTTGTCTGGTAGTTGGAGTTTATAGAGTGATATTGGTGGGTGATTGGGACCAAATGTTCATACAGGTTGCCCTTGCAAGTTTTATCATTACAATAAACTACCCTATCATTGAAGGGCTGGTGATAAGGAAGGACAAGGGACGCATTTCACAGTCGAAGACTTACTCGTCATTGAAATGTGCACCATTATATTAG
Protein sequence

>Msa0480770

MEVTQGTLPLNTCHVQKLLLIINRLHMLLHSMALGFLFYYRVCFLFQDQENRGSHLLPWLLVFASEIILSFIWFLGQAYRWRPVSRYVFPERLPEDDKLPAVDVFICTADPIKEPTLEVMNTVLSSMALDYPQQKIHVYLSDDGCSPMTLYGVRKAWEFARWWLPFCRRYRIKNRCPKAYFSALESDNNDFARSSVYMAEKQKIKRKYEAFKEEIETFRKDEAFSRDGITFGDHSSVIEVMQEDIIDDVDNVKMPQLVYVSRERKSSSPHHFKAGALNVLLRVSAVMSNSPYILVLDCDMFCNYPNSARYAMCFHLDPKISSSLSFVQFPQKFHNISKKDIYDSQLRSLFTLQWQGMDGLKGPVLSGTCFYMKRVSLYGNQANEGGTDLLQLREYFGSSNEFIKSLAQNYTRVFFPGRNTLLEEPHLLASCRYETGTKWGQDVGFLYDSVVEDFLTGFILHCNGWNSVFCEPSRPQFLGTATTNLNDVLIQGTRWYSELTYFPLYCLPLWCFATIPQFCLLNGIPLYPKVSDPYFIIFLFIFLSSLSKHLLEVFLTGGTLHKWINEQRIWMMKSTTCNLYGCLDALLKKVGIRQANFLPTNKAEDDEQTLLYQNDKYDFRASNIFIVPMLALLTINIFCLVVGVYRVILVGDWDQMFIQVALASFIITINYPIIEGLVIRKDKGRISQSKTYSSLKCAPLY*