AlfalfaGEDB | Msa0820390

M. sativa cultivar zhongmu-4 / Msa0820390

KEGG: K13993
GO: -
PFAM: PF00011.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820390	XP_003617059.1	95.184	353	10	3	1	353	1	346	0.0	665

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820390	G7KHG6	95.184	353	10	3	1	353	1	346	0.0	665

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0071880	Msa0820390	0.810855	9.365309e-51	-8.615850e-47
Msa0081520	Msa0820390	0.832770	7.821516e-56	-8.615850e-47
Msa0102870	Msa0820390	0.807816	4.201285e-50	-8.615850e-47
Msa0173890	Msa0820390	0.817564	3.088777e-52	-8.615850e-47
Msa0174450	Msa0820390	0.823608	1.263644e-53	-8.615850e-47
Msa0206840	Msa0820390	0.808659	2.778261e-50	-8.615850e-47
Msa0221000	Msa0820390	0.817178	3.773080e-52	-8.615850e-47
Msa0225100	Msa0820390	0.803085	4.125290e-49	-8.615850e-47
Msa0249540	Msa0820390	0.809222	2.105652e-50	-8.615850e-47
Msa0265850	Msa0820390	0.815977	7.011938e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820390	MtrunA17_Chr5g0440321	70.914	361	13	5	1	353	1	277	7.39e-152	428
Msa0820390	MtrunA17_Chr5g0440311	34.971	346	140	13	1	342	1	265	1.94e-34	127
Msa0820390	MtrunA17_Chr5g0440291	44.545	110	58	2	1	108	3	111	4.25e-25	102
Msa0820390	MtrunA17_Chr6g0481571	32.787	122	75	2	9	128	10	126	1.10e-13	68.2
Msa0820390	MtrunA17_Chr8g0356011	28.634	227	132	8	4	226	15	215	4.80e-13	69.7
Msa0820390	MtrunA17_Chr7g0253661	37.209	86	52	1	10	93	8	93	2.14e-12	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820390	AT2G27140.1	40.252	159	74	5	9	155	10	159	1.82e-26	105
Msa0820390	AT5G20970.1	39.844	128	73	3	10	135	7	132	3.49e-19	86.3

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Find 89 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGCCCTAAGGCTGAT+AGG	0.427961	5_3:+57687465	Msa0820390:CDS
AAATACATTTGGATCGTCTC+AGG	0.407520	5_3:+57688322	Msa0820390:CDS
AATACATTTGGATCGTCTCA+GGG	0.587906	5_3:+57688323	Msa0820390:CDS
ACAAAAGGCTGATGAGCAAA+AGG	0.421804	5_3:+57687902	Msa0820390:CDS
ACAAAAGGTTGATGAGCAAA+AGG	0.416395	5_3:+57687680	Msa0820390:CDS
ACAAAGGCATAACTAATAAA+TGG	0.287057	5_3:+57687080	Msa0820390:exon
ACAAAGTGGCGGAGAAAGTG+AGG	0.597287	5_3:+57688060	Msa0820390:CDS
ACCAAAGGAACCATCACAAA+AGG	0.514374	5_3:+57687665	Msa0820390:CDS
ACCAAAGGAATCGCCACAAA+AGG	0.496416	5_3:+57687887	Msa0820390:CDS
ACCTGTGGTCGAATTTCCAA+GGG	0.591551	5_3:-57688225	Msa0820400:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATTGAAATGGTCATGACA+TGG	-	chr5_3:57687026-57687045	None:intergenic	30.0%
TGACCATTTCAATTACTAAG+AGG	+	chr5_3:57687031-57687050	Msa0820390:five_prime_UTR	30.0%
TTGCCTCTTAGTAATTGAAA+TGG	-	chr5_3:57687037-57687056	None:intergenic	30.0%
ACTTTGAACCATATCATGAA+TGG	+	chr5_3:57687142-57687161	Msa0820390:CDS	30.0%
CTTTGAACCATATCATGAAT+GGG	+	chr5_3:57687143-57687162	Msa0820390:CDS	30.0%
CATGAATGGGATAAATATGA+TGG	+	chr5_3:57687156-57687175	Msa0820390:CDS	30.0%
TTAACATGCAGGATATAGAA+GGG	+	chr5_3:57687416-57687435	Msa0820390:intron	30.0%
ATATAGAAGGGATCAAATGA+AGG	+	chr5_3:57687428-57687447	Msa0820390:CDS	30.0%
TGCTAAACTTACTAATCCTA+AGG	+	chr5_3:57687608-57687627	Msa0820390:CDS	30.0%
AGAAGAGAAAGTAGAAACAA+AGG	+	chr5_3:57687719-57687738	Msa0820390:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	57686957	57688385	57686957	ID=Msa0820390;Name=Msa0820390
chr5_3	mRNA	57686957	57688385	57686957	ID=Msa0820390-mRNA-1;Parent=Msa0820390;Name=Msa0820390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=142\|1\|0.5\|1\|1\|1\|2\|0\|353
chr5_3	exon	57686957	57687201	57686957	ID=Msa0820390-mRNA-1:exon:17428;Parent=Msa0820390-mRNA-1
chr5_3	exon	57687427	57688385	57687427	ID=Msa0820390-mRNA-1:exon:17429;Parent=Msa0820390-mRNA-1
chr5_3	five_prime_UTR	57686957	57687098	57686957	ID=Msa0820390-mRNA-1:five_prime_utr;Parent=Msa0820390-mRNA-1
chr5_3	CDS	57687099	57687201	57687099	ID=Msa0820390-mRNA-1:cds;Parent=Msa0820390-mRNA-1
chr5_3	CDS	57687427	57688385	57687427	ID=Msa0820390-mRNA-1:cds;Parent=Msa0820390-mRNA-1

Gene Sequence

>Msa0820390

ATGGATGCAAAGACACAGCCAGAAGCTGATCGTGTCTATGAAGACTTTGAACCATATCATGAATGGGATAAATATGATGGCCGTTTCACTGTCATGCTACCAGGATATAGAAGGGATCAAATGAAGGTTCAAGTGACCTCAAAACCTGCCCTAAGGCTGATAGGTGAAAGACCAACCTTTCAGAACAGATGGCGTCGTTTTAAATTAGAATTTCCCATTCCTTCTGATTATGACACGGACAGTGTGACTGCGACATTTGAGGGTGGCAAGCTATCTGTCAAATTTGCTAAACTTACTAATCCTAAGGAAACAACAACAAATCCACCAGAAGCTGCTCCAAGACCAAAGGAACCATCACAAAAGGTTGATGAGCAAAAGGGTACCCCAAAAGCTAAAGAAGAGAAAGTAGAAACAAAGGAAACAACAACAAATCCACCAGAAGAAGCTCCAAGACTAAAGGAACCATCGCAAAACGTTGATGAGCAAAAGGGTACCCCAAAAGCTAAAGAAGAGAAAGCAGAAACAAAGGAAACAACAACAAATCCGCCAGAAGAAGCTCCAAGACCAAAGGAATCGCCACAAAAGGCTGATGAGCAAAAGGGTGCTCAAGAGGGTACCCCAAAAGCTATAGAAGAGAAAGCAGAAACAAAGACTAACGATGTCTCTGATCAAAAGACACCACCACAGAAGGAGAATGATACAATAACCGAAAAGAGCAGAACAGAAGCTAGCATAGACAAAGTGGCGGAGAAAGTGAGGACTAATGGCTCAGCTGAGACAATAGAAGCAGCAACATCTAATTCTCCTAAAACCAAAGATGCCAAGTTTATTGCTAGATGCAAAACCAGGCTTGTAGATTTCACTCTCTCTAAGGCTCTCTGTAATCAGGATGAAAATGAAGCCCTTGGAAATTCGACCACAGGTCTTAAGAAGTGGAAGAGATTGGTTGCATGTGTCATGCTAATCTTATTGGTCGTGGGACTTGGGCTTTATTGTAGAAATACATTTGGATCGTCTCAGGGAGAATTGGACTTCGAAGAGCTGTTATTATTTCCTTACTGA

Protein sequence

>Msa0820390

MDAKTQPEADRVYEDFEPYHEWDKYDGRFTVMLPGYRRDQMKVQVTSKPALRLIGERPTFQNRWRRFKLEFPIPSDYDTDSVTATFEGGKLSVKFAKLTNPKETTTNPPEAAPRPKEPSQKVDEQKGTPKAKEEKVETKETTTNPPEEAPRLKEPSQNVDEQKGTPKAKEEKAETKETTTNPPEEAPRPKESPQKADEQKGAQEGTPKAIEEKAETKTNDVSDQKTPPQKENDTITEKSRTEASIDKVAEKVRTNGSAETIEAATSNSPKTKDAKFIARCKTRLVDFTLSKALCNQDENEALGNSTTGLKKWKRLVACVMLILLVVGLGLYCRNTFGSSQGELDFEELLLFPY*