Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0922980 | XP_039682536.1 | 97.914 | 911 | 18 | 1 | 1 | 910 | 1 | 911 | 0.0 | 1860 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0922980 | sp|Q9FX32|SUS6_ARATH | 72.405 | 819 | 224 | 1 | 1 | 819 | 1 | 817 | 0.0 | 1278 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003400 | Msa0922980 | 0.802446 | 5.588582e-49 | -8.615850e-47 |
Msa0039250 | Msa0922980 | 0.809418 | 1.910900e-50 | -8.615850e-47 |
Msa0050820 | Msa0922980 | 0.813750 | 2.184963e-51 | -8.615850e-47 |
Msa0054820 | Msa0922980 | 0.813455 | 2.537196e-51 | -8.615850e-47 |
Msa0081520 | Msa0922980 | 0.806721 | 7.169685e-50 | -8.615850e-47 |
Msa0102860 | Msa0922980 | 0.803351 | 3.634247e-49 | -8.615850e-47 |
Msa0102870 | Msa0922980 | 0.809479 | 1.854339e-50 | -8.615850e-47 |
Msa0108390 | Msa0922980 | 0.803797 | 2.936822e-49 | -8.615850e-47 |
Msa0628670 | Msa0922980 | 0.804811 | 1.805879e-49 | -8.615850e-47 |
Msa0751260 | Msa0922980 | 0.814974 | 1.172296e-51 | -8.615850e-47 |
Msa0780270 | Msa0922980 | 0.805290 | 1.433457e-49 | -8.615850e-47 |
Msa0795070 | Msa0922980 | 0.800189 | 1.619392e-48 | -8.615850e-47 |
Msa0800700 | Msa0922980 | 0.800294 | 1.541713e-48 | -8.615850e-47 |
Msa0820390 | Msa0922980 | 0.804227 | 2.389914e-49 | -8.615850e-47 |
Msa0133720 | Msa0922980 | 0.816704 | 4.820956e-52 | -8.615850e-47 |
Msa0133820 | Msa0922980 | 0.801067 | 1.072651e-48 | -8.615850e-47 |
Msa0173890 | Msa0922980 | 0.802117 | 6.533592e-49 | -8.615850e-47 |
Msa0187030 | Msa0922980 | 0.804224 | 2.393552e-49 | -8.615850e-47 |
Msa0191020 | Msa0922980 | 0.804264 | 2.348724e-49 | -8.615850e-47 |
Msa0225220 | Msa0922980 | 0.824746 | 6.831144e-54 | -8.615850e-47 |
Msa0233320 | Msa0922980 | 0.803798 | 2.934809e-49 | -8.615850e-47 |
Msa0378720 | Msa0922980 | 0.808483 | 3.029161e-50 | -8.615850e-47 |
Msa0417880 | Msa0922980 | 0.815183 | 1.053203e-51 | -8.615850e-47 |
Msa0440440 | Msa0922980 | 0.801922 | 7.162660e-49 | -8.615850e-47 |
Msa0462070 | Msa0922980 | 0.800434 | 1.443961e-48 | -8.615850e-47 |
Msa0474730 | Msa0922980 | 0.800682 | 1.285158e-48 | -8.615850e-47 |
Msa0300270 | Msa0922980 | 0.803948 | 2.731791e-49 | -8.615850e-47 |
Msa0342010 | Msa0922980 | 0.833628 | 4.781159e-56 | -8.615850e-47 |
Msa0488790 | Msa0922980 | 0.816546 | 5.231758e-52 | -8.615850e-47 |
Msa0579660 | Msa0922980 | 0.808851 | 2.528041e-50 | -8.615850e-47 |
Msa0846140 | Msa0922980 | 0.806933 | 6.466363e-50 | -8.615850e-47 |
Msa0896440 | Msa0922980 | 0.877329 | 6.858056e-69 | -8.615850e-47 |
Msa0922980 | Msa0923030 | 0.887432 | 1.434696e-72 | -8.615850e-47 |
Msa0922980 | Msa0961630 | 0.856288 | 3.559826e-62 | -8.615850e-47 |
Msa0922980 | Msa0996330 | 0.822078 | 2.871896e-53 | -8.615850e-47 |
Msa0922980 | Msa1031930 | 0.807972 | 3.892933e-50 | -8.615850e-47 |
Msa0922980 | Msa1071770 | 0.802673 | 5.018045e-49 | -8.615850e-47 |
Msa0922980 | Msa1102770 | 0.800318 | 1.524871e-48 | -8.615850e-47 |
Msa0922980 | Msa1113800 | 0.816719 | 4.783546e-52 | -8.615850e-47 |
Msa0922980 | Msa1160500 | 0.813566 | 2.399102e-51 | -8.615850e-47 |
Msa0922980 | Msa1199570 | 0.801486 | 8.801471e-49 | -8.615850e-47 |
Msa0922980 | Msa1227150 | 0.806612 | 7.557447e-50 | -8.615850e-47 |
Msa0922980 | Msa1269890 | 0.800637 | 1.312835e-48 | -8.615850e-47 |
Msa0922980 | Msa1328640 | 0.818314 | 2.090779e-52 | -8.615850e-47 |
Msa0922980 | Msa1356830 | 0.807869 | 4.094164e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0922980 | MtrunA17_Chr6g0481131 | 97.914 | 911 | 18 | 1 | 1 | 910 | 1 | 911 | 0.0 | 1860 |
Msa0922980 | MtrunA17_Chr6g0481171 | 96.807 | 783 | 20 | 2 | 133 | 910 | 5 | 787 | 0.0 | 1576 |
Msa0922980 | MtrunA17_Chr5g0433761 | 72.760 | 826 | 224 | 1 | 6 | 831 | 4 | 828 | 0.0 | 1301 |
Msa0922980 | MtrunA17_Chr3g0109841 | 70.843 | 830 | 238 | 2 | 5 | 830 | 3 | 832 | 0.0 | 1268 |
Msa0922980 | MtrunA17_Chr7g0269581 | 56.554 | 801 | 344 | 2 | 11 | 811 | 9 | 805 | 0.0 | 948 |
Msa0922980 | MtrunA17_Chr4g0070011 | 55.583 | 806 | 352 | 4 | 5 | 809 | 2 | 802 | 0.0 | 947 |
Msa0922980 | MtrunA17_Chr2g0301621 | 54.851 | 804 | 357 | 4 | 7 | 809 | 2 | 800 | 0.0 | 944 |
Msa0922980 | MtrunA17_Chr1g0195241 | 56.494 | 770 | 334 | 1 | 38 | 807 | 18 | 786 | 0.0 | 919 |
Msa0922980 | MtrunA17_Chr6g0481241 | 82.645 | 242 | 19 | 2 | 638 | 879 | 1 | 219 | 6.94e-134 | 400 |
Msa0922980 | MtrunA17_Chr6g0481261 | 98.058 | 103 | 2 | 0 | 638 | 740 | 1 | 103 | 8.38e-68 | 220 |
Msa0922980 | MtrunA17_Chr6g0481271 | 69.799 | 149 | 31 | 4 | 770 | 910 | 1 | 143 | 2.10e-54 | 185 |
Msa0922980 | MtrunA17_Chr6g0481211 | 88.542 | 96 | 7 | 1 | 819 | 910 | 1 | 96 | 1.23e-48 | 167 |
Msa0922980 | MtrunA17_Chr6g0481151 | 94.521 | 73 | 4 | 0 | 568 | 640 | 24 | 96 | 1.59e-40 | 144 |
Msa0922980 | MtrunA17_Chr5g0443091 | 26.195 | 523 | 321 | 19 | 285 | 757 | 171 | 678 | 2.53e-35 | 145 |
Msa0922980 | MtrunA17_Chr3g0096241 | 25.430 | 523 | 322 | 16 | 285 | 757 | 167 | 671 | 6.88e-35 | 144 |
Msa0922980 | MtrunA17_Chr4g0064501 | 25.795 | 566 | 331 | 21 | 265 | 767 | 125 | 664 | 3.35e-34 | 141 |
Msa0922980 | MtrunA17_Chr6g0481161 | 95.455 | 44 | 2 | 0 | 690 | 733 | 1 | 44 | 2.13e-25 | 99.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0922980 | AT1G73370.3 | 72.405 | 819 | 224 | 1 | 1 | 819 | 1 | 817 | 0.0 | 1278 |
Msa0922980 | AT1G73370.1 | 72.405 | 819 | 224 | 1 | 1 | 819 | 1 | 817 | 0.0 | 1278 |
Msa0922980 | AT1G73370.2 | 72.903 | 775 | 208 | 1 | 45 | 819 | 1 | 773 | 0.0 | 1214 |
Msa0922980 | AT5G37180.1 | 68.797 | 798 | 246 | 1 | 12 | 809 | 5 | 799 | 0.0 | 1186 |
Msa0922980 | AT5G37180.2 | 74.959 | 611 | 153 | 0 | 199 | 809 | 1 | 611 | 0.0 | 988 |
Msa0922980 | AT4G02280.1 | 56.875 | 800 | 344 | 1 | 9 | 808 | 6 | 804 | 0.0 | 967 |
Msa0922980 | AT5G49190.1 | 55.444 | 799 | 355 | 1 | 11 | 809 | 5 | 802 | 0.0 | 941 |
Msa0922980 | AT5G49190.2 | 56.572 | 776 | 336 | 1 | 34 | 809 | 18 | 792 | 0.0 | 934 |
Msa0922980 | AT5G20830.3 | 54.938 | 810 | 359 | 4 | 3 | 811 | 2 | 806 | 0.0 | 924 |
Msa0922980 | AT5G20830.2 | 54.938 | 810 | 359 | 4 | 3 | 811 | 2 | 806 | 0.0 | 924 |
Msa0922980 | AT5G20830.1 | 54.938 | 810 | 359 | 4 | 3 | 811 | 2 | 806 | 0.0 | 924 |
Msa0922980 | AT3G43190.2 | 54.950 | 808 | 358 | 4 | 3 | 809 | 2 | 804 | 0.0 | 922 |
Msa0922980 | AT3G43190.1 | 54.950 | 808 | 358 | 4 | 3 | 809 | 2 | 804 | 0.0 | 922 |
Msa0922980 | AT5G49190.3 | 58.367 | 735 | 305 | 1 | 75 | 809 | 3 | 736 | 0.0 | 920 |
Msa0922980 | AT5G37180.3 | 76.673 | 553 | 129 | 0 | 257 | 809 | 1 | 553 | 0.0 | 919 |
Msa0922980 | AT4G10120.4 | 25.813 | 523 | 321 | 17 | 285 | 769 | 23 | 516 | 7.06e-36 | 147 |
Msa0922980 | AT4G10120.2 | 25.813 | 523 | 321 | 17 | 285 | 769 | 197 | 690 | 1.11e-35 | 147 |
Msa0922980 | AT4G10120.3 | 25.813 | 523 | 321 | 17 | 285 | 769 | 197 | 690 | 1.11e-35 | 147 |
Msa0922980 | AT4G10120.1 | 25.813 | 523 | 321 | 17 | 285 | 769 | 197 | 690 | 1.11e-35 | 147 |
Msa0922980 | AT1G04920.1 | 26.629 | 537 | 330 | 20 | 281 | 767 | 168 | 690 | 9.52e-35 | 144 |
Msa0922980 | AT4G10120.5 | 25.299 | 502 | 310 | 15 | 304 | 769 | 17 | 489 | 2.45e-34 | 142 |
Msa0922980 | AT5G11110.1 | 25.556 | 540 | 328 | 20 | 285 | 783 | 177 | 683 | 2.53e-33 | 139 |
Msa0922980 | AT5G20280.1 | 25.365 | 548 | 322 | 20 | 281 | 778 | 166 | 676 | 1.45e-32 | 137 |
Msa0922980 | AT1G78800.1 | 27.542 | 236 | 141 | 9 | 540 | 767 | 176 | 389 | 7.13e-12 | 68.9 |
Find 179 sgRNAs with CRISPR-Local
Find 411 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCTATTCATGGATATTT+TGG | 0.085644 | 6_2:+62712420 | Msa0922980:CDS |
TCATTATCTCTCTAAGTATT+TGG | 0.124183 | 6_2:+62717155 | Msa0922980:CDS |
TTGAATATGGGATCAATTTA+TGG | 0.132045 | 6_2:+62715765 | Msa0922980:CDS |
CAAAGTGGTGATCTTTATTC+TGG | 0.176068 | 6_2:+62717090 | Msa0922980:CDS |
AAACTTGGTTTCATCCTTAA+TGG | 0.187010 | 6_2:+62713669 | Msa0922980:CDS |
TGGGATCAATTTATGGGTTT+TGG | 0.205721 | 6_2:+62715772 | Msa0922980:CDS |
CTTGCCATTGAGAAGATTAT+AGG | 0.209492 | 6_2:-62714980 | None:intergenic |
TTGACATTGGTTGTGGTTCT+TGG | 0.220747 | 6_2:-62716270 | None:intergenic |
TGTTAGCTTAGATTCAATTT+TGG | 0.228497 | 6_2:-62716389 | None:intergenic |
TGCAAACAAAGTGTTGAATA+TGG | 0.228861 | 6_2:+62715752 | Msa0922980:CDS |
TACCAAGATTCTTGAACTTA+TGG | 0.238387 | 6_2:+62713606 | Msa0922980:CDS |
TTACCTCTCCTTGATGATTA+AGG | 0.239757 | 6_2:-62711770 | None:intergenic |
TTAGGCCTAATCCAGGTTTC+TGG | 0.246738 | 6_2:+62710899 | Msa0922980:CDS |
ACATTCTTAGAGTCCCTTTC+TGG | 0.252632 | 6_2:+62713392 | Msa0922980:CDS |
ACCAAGTTTAGAAGCCATTA+AGG | 0.255408 | 6_2:-62713683 | None:intergenic |
GGAAAACCTGACCTCATTAT+TGG | 0.261160 | 6_2:+62713631 | Msa0922980:CDS |
TCAACCTTCCAGCAATTTCT+TGG | 0.267722 | 6_2:-62714203 | None:intergenic |
GGCCTTGCAACTCAATCTTT+TGG | 0.279108 | 6_2:-62713068 | None:intergenic |
ATGGCACTTTCATCTTCTAT+TGG | 0.281086 | 6_2:+62711657 | Msa0922980:CDS |
GACATTATGTTCCAGTGTTC+AGG | 0.284963 | 6_2:-62715469 | None:intergenic |
AGCAGGAGATCCAATTAAAA+TGG | 0.288529 | 6_2:+62712353 | Msa0922980:CDS |
TGAGCAAATCTTTCTAAATA+AGG | 0.291781 | 6_2:-62713463 | None:intergenic |
ATGAAGATTCAGATGCTAAA+TGG | 0.297761 | 6_2:+62714088 | Msa0922980:CDS |
GGATTACGTTGGTTGCTTCC+AGG | 0.317665 | 6_2:+62717111 | Msa0922980:CDS |
TTTGGCCAAGCAGATGTTCT+AGG | 0.324417 | 6_2:+62712438 | Msa0922980:CDS |
TCATTTCAACATTGTACATT+TGG | 0.325535 | 6_2:+62717318 | Msa0922980:three_prime_UTR |
TCCTTAATGGCTTCTAAACT+TGG | 0.326870 | 6_2:+62713682 | Msa0922980:CDS |
TTTCATATTGATCCTCATAA+TGG | 0.327462 | 6_2:+62715394 | Msa0922980:CDS |
GAATCTGAGGCTTCACATTA+AGG | 0.333564 | 6_2:-62713089 | None:intergenic |
TTCAATGCTTTCTGAAGCTT+TGG | 0.336752 | 6_2:-62711940 | None:intergenic |
TGACATTGGTTGTGGTTCTT+GGG | 0.341000 | 6_2:-62716269 | None:intergenic |
CGGCTTTGTTTCAAGGCATC+AGG | 0.345200 | 6_2:-62710081 | None:intergenic |
TAGAGAATGGGGATTTGATA+AGG | 0.349353 | 6_2:+62712269 | Msa0922980:CDS |
TGGCAAAGCATTTCTTCATA+TGG | 0.350848 | 6_2:-62710107 | None:intergenic |
TGAATATGGGATCAATTTAT+GGG | 0.351676 | 6_2:+62715766 | Msa0922980:CDS |
TGGGTGGTAATGCTGCCAAC+TGG | 0.353236 | 6_2:-62716369 | None:intergenic |
CCAGCACTGTATGAAGCTTT+TGG | 0.355508 | 6_2:+62715277 | Msa0922980:CDS |
ATCCATAAGTTCAAGAATCT+TGG | 0.355620 | 6_2:-62713608 | None:intergenic |
TTGGTAAATCTTGTAATTGT+TGG | 0.358781 | 6_2:+62715070 | Msa0922980:CDS |
TGTGGTTCTTGGGGTACCTT+AGG | 0.359949 | 6_2:-62716259 | None:intergenic |
TAAAGTGAATGCAGATGATT+TGG | 0.361708 | 6_2:+62710930 | Msa0922980:CDS |
TCTTGGGGTACCTTAGGAAT+TGG | 0.371733 | 6_2:-62716253 | None:intergenic |
ATAACAATGTTGAACATGTT+TGG | 0.375732 | 6_2:-62712396 | None:intergenic |
TAATCTTCAATTTAGGAACT+TGG | 0.378334 | 6_2:+62715851 | Msa0922980:CDS |
GGCAACCATTGCTCATGCTT+TGG | 0.379572 | 6_2:+62714053 | Msa0922980:intron |
TGAAACAGGTTGGTTGCAAA+TGG | 0.380181 | 6_2:+62710721 | Msa0922980:intron |
GGTCAATCTTTGCTTCTTCT+CGG | 0.380664 | 6_2:-62714476 | None:intergenic |
ATGGAAACGGCTTTGTTTCA+AGG | 0.384267 | 6_2:-62710088 | None:intergenic |
TGAAGAACTACTTTATAGTA+AGG | 0.393754 | 6_2:+62714516 | Msa0922980:CDS |
TATTGAAATTGTTCCTCAAA+TGG | 0.400675 | 6_2:+62710005 | Msa0922980:exon |
CCTTGATTTGTTGCAAAAGT+TGG | 0.402280 | 6_2:-62715334 | None:intergenic |
TGATTTCACCACACCTCATA+TGG | 0.403948 | 6_2:+62711638 | Msa0922980:CDS |
CTGTGAGCAGGTTTAGAGAA+TGG | 0.406425 | 6_2:+62712256 | Msa0922980:intron |
AAAACCTGGCCTCCAGTGTC+TGG | 0.410753 | 6_2:-62712465 | None:intergenic |
CATTGCTTTGCAGGCAAGAA+AGG | 0.413703 | 6_2:+62716228 | Msa0922980:intron |
CTTTGCTTCTTCTCGGTGAA+AGG | 0.416303 | 6_2:-62714469 | None:intergenic |
ATTGATTCATCTCCATTATG+AGG | 0.417122 | 6_2:-62715406 | None:intergenic |
AGAGAATGGGGATTTGATAA+GGG | 0.418726 | 6_2:+62712270 | Msa0922980:CDS |
GTACATTTGGAATTAATTAG+TGG | 0.421448 | 6_2:+62717331 | Msa0922980:three_prime_UTR |
ATCATTGTTGATGGTGTCTC+AGG | 0.423066 | 6_2:+62715370 | Msa0922980:CDS |
CTTTCATCTTCTATTGGAAA+AGG | 0.424148 | 6_2:+62711663 | Msa0922980:CDS |
TAGGCCTAATCCAGGTTTCT+GGG | 0.431601 | 6_2:+62710900 | Msa0922980:CDS |
ACAATAAAGTTGAAATAAGA+AGG | 0.431928 | 6_2:-62717268 | None:intergenic |
AAATTATACTGATGGAAACT+TGG | 0.433245 | 6_2:+62713654 | Msa0922980:CDS |
TGTGAGCAGGTTTAGAGAAT+GGG | 0.435185 | 6_2:+62712257 | Msa0922980:intron |
GCAGATGATTTGGAAGTAGA+TGG | 0.435227 | 6_2:+62710940 | Msa0922980:CDS |
ATGAACATAAAAGCAATTCC+TGG | 0.435819 | 6_2:-62717129 | None:intergenic |
ATCGAATCGCGACACCCATT+GGG | 0.436391 | 6_2:-62713434 | None:intergenic |
CGTCTGATACCGAATGCAAA+AGG | 0.436501 | 6_2:+62713319 | Msa0922980:CDS |
GGACTTTGTCGCGTAGTCTC+TGG | 0.439215 | 6_2:+62714382 | Msa0922980:CDS |
ACTATAAAGTAGTTCTTCAA+TGG | 0.445434 | 6_2:-62714512 | None:intergenic |
ATCGAAAGACAGAGAAGAAA+CGG | 0.446782 | 6_2:+62715114 | Msa0922980:CDS |
CAGTGGTGAATCTTCAAGTA+AGG | 0.447365 | 6_2:+62717053 | Msa0922980:intron |
AATGGGGATTTGATAAGGGC+TGG | 0.447897 | 6_2:+62712274 | Msa0922980:CDS |
GTAAATCTTGTAATTGTTGG+AGG | 0.448003 | 6_2:+62715073 | Msa0922980:CDS |
ATACTTGAAATACAAGGAAA+TGG | 0.459100 | 6_2:+62710978 | Msa0922980:CDS |
ATTGCCAGACACTGGAGGCC+AGG | 0.463699 | 6_2:+62712461 | Msa0922980:CDS |
GCAAACAAAGTGTTGAATAT+GGG | 0.464065 | 6_2:+62715753 | Msa0922980:CDS |
ATGGGGATTTGATAAGGGCT+GGG | 0.465930 | 6_2:+62712275 | Msa0922980:CDS |
GGAGCAGCAATGTTGAACTT+TGG | 0.467131 | 6_2:-62714421 | None:intergenic |
TATCGAATCGCGACACCCAT+TGG | 0.467975 | 6_2:-62713435 | None:intergenic |
TATTCCCAGAAACCTGGATT+AGG | 0.468624 | 6_2:-62710904 | None:intergenic |
TTATTTAGAAAGATTTGCTC+AGG | 0.470017 | 6_2:+62713465 | Msa0922980:CDS |
TAATTTCCAATAATGAGGTC+AGG | 0.474083 | 6_2:-62713637 | None:intergenic |
GGTTGGTTGCAAATGGGAAA+AGG | 0.475033 | 6_2:+62710728 | Msa0922980:intron |
AGTACATACCAAGAAATTGC+TGG | 0.475992 | 6_2:+62714195 | Msa0922980:CDS |
CTTGAAGTAGAAGCCATTTG+AGG | 0.483755 | 6_2:-62710018 | None:intergenic |
AAGTTCAACATTGCTGCTCC+AGG | 0.484663 | 6_2:+62714424 | Msa0922980:CDS |
AGCATTTCTTCATATGGAAA+CGG | 0.485069 | 6_2:-62710101 | None:intergenic |
TTTGCTGTTAGGCCTAATCC+AGG | 0.486027 | 6_2:+62710892 | Msa0922980:CDS |
CGATGTATCGCAGACACAAA+AGG | 0.492687 | 6_2:+62715241 | Msa0922980:CDS |
TAAAGTAGTTCTTCAATGGC+AGG | 0.495336 | 6_2:-62714508 | None:intergenic |
AACTGCAAGGTCAGTTCAGA+TGG | 0.495963 | 6_2:+62715176 | Msa0922980:CDS |
CTGCCTCCTGTGTACAACTT+AGG | 0.496308 | 6_2:-62710846 | None:intergenic |
TTAACATATTCCCAGAAACC+TGG | 0.497442 | 6_2:-62710910 | None:intergenic |
AGTGAGACTAAATCACATAA+TGG | 0.498159 | 6_2:+62710753 | Msa0922980:CDS |
TTCCCTTCTCTGTCCAGAAA+GGG | 0.498281 | 6_2:-62713405 | None:intergenic |
CACACTGCATTTACCATGCC+GGG | 0.502984 | 6_2:+62714361 | Msa0922980:CDS |
ATTATTGGAAATTATACTGA+TGG | 0.504515 | 6_2:+62713646 | Msa0922980:CDS |
CTGGGGAAACACTGCAGGAA+GGG | 0.509076 | 6_2:+62712293 | Msa0922980:CDS |
ATATGAAGAAATGCTTTGCC+AGG | 0.509721 | 6_2:+62710109 | Msa0922980:CDS |
GAAACAGGTTGGTTGCAAAT+GGG | 0.514671 | 6_2:+62710722 | Msa0922980:intron |
AATGCTGCCAACTGGGTTTG+AGG | 0.514762 | 6_2:-62716361 | None:intergenic |
TTTGCTTCTTCTCGGTGAAA+GGG | 0.515058 | 6_2:-62714468 | None:intergenic |
TTATTAAGCCTTAATCATCA+AGG | 0.516137 | 6_2:+62711762 | Msa0922980:CDS |
TAGACAGATTGATCAGCTCC+TGG | 0.517673 | 6_2:-62714442 | None:intergenic |
ATCATCAGCAAGGATAGGCC+AGG | 0.517818 | 6_2:+62714325 | Msa0922980:intron |
ATTCCCTTCTCTGTCCAGAA+AGG | 0.522424 | 6_2:-62713406 | None:intergenic |
AAGATTCTTGAACTTATGGA+TGG | 0.523540 | 6_2:+62713610 | Msa0922980:CDS |
TTTGTATCATCAGCAAGGAT+AGG | 0.525118 | 6_2:+62714320 | Msa0922980:intron |
CCAGCTGAAATCATTGTTGA+TGG | 0.526521 | 6_2:+62715361 | Msa0922980:CDS |
CTTTCTGAGGTACTAGAAGC+AGG | 0.528208 | 6_2:+62712336 | Msa0922980:CDS |
TTCTAAACTTGGTGTAACTC+AGG | 0.528300 | 6_2:+62713693 | Msa0922980:CDS |
TCTTCGCGAACCACTCGACT+AGG | 0.529092 | 6_2:-62715030 | None:intergenic |
CTTAATAAGTAATTAAGCAA+TGG | 0.529556 | 6_2:-62711747 | None:intergenic |
GGAGTTGTTGACATTGGTTG+TGG | 0.530294 | 6_2:-62716277 | None:intergenic |
TTGTGCTGCATCATGCCCCT+TGG | 0.530931 | 6_2:-62716323 | None:intergenic |
GTTGAACAAAGAACAAAAGT+TGG | 0.532400 | 6_2:+62715800 | Msa0922980:CDS |
CCATCAACAATGATTTCAGC+TGG | 0.532974 | 6_2:-62715361 | None:intergenic |
GTGTGAGTTTCATACTGCCC+TGG | 0.533705 | 6_2:-62714343 | None:intergenic |
GTCTTCAAAGAATCAATGAA+TGG | 0.533715 | 6_2:+62715500 | Msa0922980:CDS |
ATCTTTATTCTGGATTACGT+TGG | 0.533971 | 6_2:+62717100 | Msa0922980:CDS |
TTGTATTTCAAGTATTCTGA+AGG | 0.535677 | 6_2:-62710970 | None:intergenic |
GAAACCTATAATCTTCTCAA+TGG | 0.538316 | 6_2:+62714976 | Msa0922980:CDS |
GAAGATGAAAGTGCCATATG+AGG | 0.538755 | 6_2:-62711651 | None:intergenic |
AAGGGCTGGGGAAACACTGC+AGG | 0.541174 | 6_2:+62712288 | Msa0922980:CDS |
GTTCTAGGATTGCCAGACAC+TGG | 0.541620 | 6_2:+62712453 | Msa0922980:CDS |
GACATTGGTTGTGGTTCTTG+GGG | 0.542407 | 6_2:-62716268 | None:intergenic |
GAAGGGAATTCTATCCCAAT+GGG | 0.543801 | 6_2:+62713420 | Msa0922980:CDS |
GTCCCTTTCTGGACAGAGAA+GGG | 0.546251 | 6_2:+62713403 | Msa0922980:CDS |
CTACTAGGATCTTGACCTCA+AGG | 0.547581 | 6_2:+62711697 | Msa0922980:CDS |
AAATCACATAATGGAAGATG+TGG | 0.551952 | 6_2:+62710762 | Msa0922980:CDS |
AGTCCCTTTCTGGACAGAGA+AGG | 0.554342 | 6_2:+62713402 | Msa0922980:CDS |
TCACACTGCATTTACCATGC+CGG | 0.555687 | 6_2:+62714360 | Msa0922980:CDS |
GGGTGGTAATGCTGCCAACT+GGG | 0.556750 | 6_2:-62716368 | None:intergenic |
CCAAAAGCTTCATACAGTGC+TGG | 0.557579 | 6_2:-62715277 | None:intergenic |
AAAGCAGAAGCTACTTCCAA+GGG | 0.561938 | 6_2:+62716307 | Msa0922980:CDS |
AAAAGCAGAAGCTACTTCCA+AGG | 0.562076 | 6_2:+62716306 | Msa0922980:CDS |
TTGGCAGGAGTTGTTGACAT+TGG | 0.562547 | 6_2:-62716283 | None:intergenic |
GTCTGATACCGAATGCAAAA+GGG | 0.564856 | 6_2:+62713320 | Msa0922980:CDS |
AAGAAAGGTACCAATTCCTA+AGG | 0.565800 | 6_2:+62716243 | Msa0922980:CDS |
TGGGGATTTGATAAGGGCTG+GGG | 0.568733 | 6_2:+62712276 | Msa0922980:CDS |
GAACAAGAGACTAAGAAGCT+TGG | 0.571888 | 6_2:+62715051 | Msa0922980:CDS |
AAATGGTATTTGATGAGAAG+TGG | 0.572044 | 6_2:+62710995 | Msa0922980:CDS |
CTATAATCTTCTCAATGGCA+AGG | 0.572371 | 6_2:+62714981 | Msa0922980:CDS |
CAGTATAATTTCCAATAATG+AGG | 0.573217 | 6_2:-62713642 | None:intergenic |
TGGAACATAATGTCTAAAGC+TGG | 0.574022 | 6_2:+62715478 | Msa0922980:CDS |
GAGACTACGCGACAAAGTCC+CGG | 0.574380 | 6_2:-62714379 | None:intergenic |
AGAAGGGAATTCTATCCCAA+TGG | 0.579688 | 6_2:+62713419 | Msa0922980:CDS |
GCTGGGGAAACACTGCAGGA+AGG | 0.584577 | 6_2:+62712292 | Msa0922980:CDS |
GTGAGCAGGTTTAGAGAATG+GGG | 0.586889 | 6_2:+62712258 | Msa0922980:intron |
CAAAGAACAAAAGTTGGCAA+AGG | 0.588238 | 6_2:+62715806 | Msa0922980:CDS |
GCAATCCTAGAACATCTGCT+TGG | 0.596552 | 6_2:-62712443 | None:intergenic |
TTGAATCTAAGCTAACATCA+AGG | 0.597124 | 6_2:+62716395 | Msa0922980:CDS |
ATGAAAGAATACAAACTGCA+AGG | 0.608532 | 6_2:+62715163 | Msa0922980:CDS |
TTCAGAATACTTGAAATACA+AGG | 0.609609 | 6_2:+62710972 | Msa0922980:CDS |
CTCCAAAAGATTGAGTTGCA+AGG | 0.616584 | 6_2:+62713066 | Msa0922980:CDS |
TGTGAAGCCTCAGATTCTTG+TGG | 0.617074 | 6_2:+62713095 | Msa0922980:CDS |
CTTCTCCAAAGCATGAGCAA+TGG | 0.622761 | 6_2:-62714058 | None:intergenic |
TAGCATACCACAAGAATCTG+AGG | 0.626563 | 6_2:-62713102 | None:intergenic |
TTCAATGGCAGGTTGAAAAG+CGG | 0.627989 | 6_2:-62714497 | None:intergenic |
GCAAGACTAATCCTGAACAC+TGG | 0.630017 | 6_2:+62715458 | Msa0922980:CDS |
GTCATTGAGGCAATGAACTG+TGG | 0.630579 | 6_2:+62715307 | Msa0922980:CDS |
TGAAGTACCTCAAACCCAGT+TGG | 0.633135 | 6_2:+62716354 | Msa0922980:CDS |
AGGTCAGTTCAGATGGATTG+CGG | 0.634342 | 6_2:+62715183 | Msa0922980:CDS |
TCATCAGCAAGGATAGGCCA+GGG | 0.636461 | 6_2:+62714326 | Msa0922980:intron |
TGGTGTGTCTTTGTGATGTG+CGG | 0.642792 | 6_2:-62711983 | None:intergenic |
GACAATGAGAATGCTTTCTG+AGG | 0.650408 | 6_2:+62712323 | Msa0922980:CDS |
CATCCTAAGTTGTACACAGG+AGG | 0.653499 | 6_2:+62710843 | Msa0922980:CDS |
TGAACTCTCACTCAACCTTG+AGG | 0.653799 | 6_2:-62711712 | None:intergenic |
ACTAGTTATGATAAAATCAG+CGG | 0.654491 | 6_2:-62714175 | None:intergenic |
AAGCCTTAATCATCAAGGAG+AGG | 0.663492 | 6_2:+62711767 | Msa0922980:CDS |
CATACCAAGAAATTGCTGGA+AGG | 0.669178 | 6_2:+62714199 | Msa0922980:CDS |
GAACTAGCTGCAAAACAAAG+TGG | 0.672283 | 6_2:+62717075 | Msa0922980:CDS |
CTAGGATTGCCAGACACTGG+AGG | 0.672637 | 6_2:+62712456 | Msa0922980:CDS |
ATACATCCTAAGTTGTACAC+AGG | 0.691450 | 6_2:+62710840 | Msa0922980:CDS |
TGAAAGTGCCATATGAGGTG+TGG | 0.718654 | 6_2:-62711646 | None:intergenic |
CAAACTGATAGATATCGCAA+CGG | 0.722489 | 6_2:+62715208 | Msa0922980:CDS |
AAGCAGAAGCTACTTCCAAG+GGG | 0.733208 | 6_2:+62716308 | Msa0922980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATATCATTATTATAGT+AGG | + | chr6_2:62710243-62710262 | Msa0922980:intron | 10.0% |
!! | TTTATTATTTATTTACAGAT+TGG | - | chr6_2:62710366-62710385 | None:intergenic | 10.0% |
!! | TAATGAAAAAAAAATAGTAA+GGG | - | chr6_2:62711544-62711563 | None:intergenic | 10.0% |
!! | ATAATGAAAAAAAAATAGTA+AGG | - | chr6_2:62711545-62711564 | None:intergenic | 10.0% |
!!! | TTGAATAAATTTTTCTTTAT+TGG | + | chr6_2:62712989-62713008 | Msa0922980:intron | 10.0% |
!!! | TGAATAAATTTTTCTTTATT+GGG | + | chr6_2:62712990-62713009 | Msa0922980:intron | 10.0% |
!!! | ATAATTTGTAAAAGAAAATT+TGG | - | chr6_2:62713164-62713183 | None:intergenic | 10.0% |
!! | TATTATATTAACTGTTATAT+CGG | - | chr6_2:62714675-62714694 | None:intergenic | 10.0% |
!!! | ACATATTTTAGTTTTAATAA+TGG | - | chr6_2:62714732-62714751 | None:intergenic | 10.0% |
!! | TATTAAAACTAAAATATGTT+TGG | + | chr6_2:62714733-62714752 | Msa0922980:intron | 10.0% |
!!! | TTATTTTTAATAGTTTTCAT+CGG | + | chr6_2:62715885-62715904 | Msa0922980:intron | 10.0% |
!! | AAAAAAAAAAAAAAGAATAC+CGG | - | chr6_2:62716074-62716093 | None:intergenic | 10.0% |
!!! | TATTCTTTTTTTTTTTTTTG+AGG | + | chr6_2:62716075-62716094 | Msa0922980:intron | 10.0% |
!!! | ATTCTTTTTTTTTTTTTTGA+GGG | + | chr6_2:62716076-62716095 | Msa0922980:intron | 10.0% |
!! | TTCAATTCTTATTATATTTA+AGG | - | chr6_2:62716191-62716210 | None:intergenic | 10.0% |
!! | AATCATAATATAATATTTAG+GGG | - | chr6_2:62716553-62716572 | None:intergenic | 10.0% |
!! | CAATCATAATATAATATTTA+GGG | - | chr6_2:62716554-62716573 | None:intergenic | 10.0% |
!! | ACAATCATAATATAATATTT+AGG | - | chr6_2:62716555-62716574 | None:intergenic | 10.0% |
!! | ATTACACTTATTAATTATCA+AGG | + | chr6_2:62710196-62710215 | Msa0922980:intron | 15.0% |
!! | TAACAAACAATATTATATGA+AGG | + | chr6_2:62710606-62710625 | Msa0922980:intron | 15.0% |
!!! | ATAAAATTTTCAAAACTGTA+CGG | + | chr6_2:62711245-62711264 | Msa0922980:intron | 15.0% |
!! | GATAAATTAATATGGTATTT+AGG | - | chr6_2:62712509-62712528 | None:intergenic | 15.0% |
!! | AGTAGTTAGATAAATTAATA+TGG | - | chr6_2:62712517-62712536 | None:intergenic | 15.0% |
!!! | AATTTTAGTTATATTGAAGA+GGG | - | chr6_2:62712906-62712925 | None:intergenic | 15.0% |
!!! | AAATTTTAGTTATATTGAAG+AGG | - | chr6_2:62712907-62712926 | None:intergenic | 15.0% |
!! | ACTAAAATTTGTCAAAATTA+TGG | + | chr6_2:62712917-62712936 | Msa0922980:intron | 15.0% |
!!! | TATGCATTTTTATTATAAAC+AGG | + | chr6_2:62713576-62713595 | Msa0922980:intron | 15.0% |
!! | AATTCTTATATACTATCTTA+TGG | + | chr6_2:62714257-62714276 | Msa0922980:intron | 15.0% |
!! | TTAATGTAATATTATCATGA+AGG | + | chr6_2:62714280-62714299 | Msa0922980:intron | 15.0% |
!! | TTTGAAAATGACAAATAAAT+CGG | + | chr6_2:62715584-62715603 | Msa0922980:intron | 15.0% |
!!! | TGTTTTATAATCTTCAATTT+AGG | + | chr6_2:62715844-62715863 | Msa0922980:CDS | 15.0% |
!!! | TTTTGCAATATATAACAAAT+AGG | + | chr6_2:62716165-62716184 | Msa0922980:intron | 15.0% |
!! | TAATAAGAATTGAAAAGTTA+TGG | + | chr6_2:62716197-62716216 | Msa0922980:intron | 15.0% |
!! | AATAAGAATTGAAAAGTTAT+GGG | + | chr6_2:62716198-62716217 | Msa0922980:intron | 15.0% |
!! | TAAAACCAAATATTCATTTA+GGG | - | chr6_2:62716482-62716501 | None:intergenic | 15.0% |
!! | TTAAAACCAAATATTCATTT+AGG | - | chr6_2:62716483-62716502 | None:intergenic | 15.0% |
!! | AACAAATAATATGAGACAAA+GGG | - | chr6_2:62710139-62710158 | None:intergenic | 20.0% |
!!! | CTCATATTATTTGTTGTTTA+AGG | + | chr6_2:62710144-62710163 | Msa0922980:intron | 20.0% |
!!! | ATTATTTGTTGTTTAAGGTT+AGG | + | chr6_2:62710149-62710168 | Msa0922980:intron | 20.0% |
!! | TAAATGTATAGAATGAAAGT+TGG | + | chr6_2:62710408-62710427 | Msa0922980:intron | 20.0% |
!!! | GTATTGATCACATTTTTAAT+AGG | - | chr6_2:62710534-62710553 | None:intergenic | 20.0% |
!!! | GTTGTTTTTTGTGTTAATTT+TGG | + | chr6_2:62710657-62710676 | Msa0922980:intron | 20.0% |
!!! | ATTAAGCATACAATTTTCTT+TGG | + | chr6_2:62711044-62711063 | Msa0922980:intron | 20.0% |
!!! | AATTTGTTTTGTAAATCTGA+GGG | - | chr6_2:62711120-62711139 | None:intergenic | 20.0% |
!!! | TAATTTGTTTTGTAAATCTG+AGG | - | chr6_2:62711121-62711140 | None:intergenic | 20.0% |
!!! | TTTTAGTCCTTCAAATTATA+AGG | - | chr6_2:62711359-62711378 | None:intergenic | 20.0% |
!! | ATTTATTTGACTCTTTGATA+AGG | + | chr6_2:62711409-62711428 | Msa0922980:intron | 20.0% |
!! | CTTAATAAGTAATTAAGCAA+TGG | - | chr6_2:62711750-62711769 | None:intergenic | 20.0% |
!! | TTAATTGTATATTGACACTT+CGG | - | chr6_2:62712201-62712220 | None:intergenic | 20.0% |
!!! | AAAAGTGATTCCATTTTAAT+TGG | - | chr6_2:62712366-62712385 | None:intergenic | 20.0% |
!!! | ATTGTTATTTTCTCTATTCA+TGG | + | chr6_2:62712411-62712430 | Msa0922980:CDS | 20.0% |
!! | AATATCAAATATGGAATAGA+GGG | - | chr6_2:62713519-62713538 | None:intergenic | 20.0% |
!! | TAATATCAAATATGGAATAG+AGG | - | chr6_2:62713520-62713539 | None:intergenic | 20.0% |
!! | AAAAATGCATAATTAGAAAG+AGG | - | chr6_2:62713567-62713586 | None:intergenic | 20.0% |
!! | ATTATTGGAAATTATACTGA+TGG | + | chr6_2:62713646-62713665 | Msa0922980:CDS | 20.0% |
!! | ATTATATAAGCACTTAATCA+AGG | - | chr6_2:62713735-62713754 | None:intergenic | 20.0% |
!! | ATAAAATAGTTGAAGGATTA+AGG | + | chr6_2:62714623-62714642 | Msa0922980:intron | 20.0% |
!! | TTTGGACTATAAACATATTA+TGG | + | chr6_2:62714751-62714770 | Msa0922980:intron | 20.0% |
!! | ATAATGTTTAAGAAAGCAAA+GGG | - | chr6_2:62714780-62714799 | None:intergenic | 20.0% |
!! | AATAATGTTTAAGAAAGCAA+AGG | - | chr6_2:62714781-62714800 | None:intergenic | 20.0% |
!! | TTTATGGTTATGGATATTAT+CGG | + | chr6_2:62715534-62715553 | Msa0922980:intron | 20.0% |
!! | TAGTTTAACAAACATTCATA+TGG | + | chr6_2:62715672-62715691 | Msa0922980:intron | 20.0% |
!!! | AAATCTCTAAAAACTAATCT+CGG | + | chr6_2:62716118-62716137 | Msa0922980:intron | 20.0% |
!!! | ATATTATGATTGTGCATTTT+CGG | + | chr6_2:62716562-62716581 | Msa0922980:intron | 20.0% |
!! | ACAATAAAGTTGAAATAAGA+AGG | - | chr6_2:62717271-62717290 | None:intergenic | 20.0% |
! | TATTGAAATTGTTCCTCAAA+TGG | + | chr6_2:62710005-62710024 | Msa0922980:exon | 25.0% |
! | CAACAAATAATATGAGACAA+AGG | - | chr6_2:62710140-62710159 | None:intergenic | 25.0% |
! | TCATTATTATAGTAGGAGTA+AGG | + | chr6_2:62710250-62710269 | Msa0922980:intron | 25.0% |
! | GAGTAAGGACTAATTATTAT+AGG | + | chr6_2:62710265-62710284 | Msa0922980:intron | 25.0% |
!!! | ATTTTAGTTACATTGTAGTC+TGG | - | chr6_2:62710483-62710502 | None:intergenic | 25.0% |
! | TCATACCTTAATGTTAAAGA+AGG | - | chr6_2:62710695-62710714 | None:intergenic | 25.0% |
! | AGGTATGAAAAATATGAAAC+AGG | + | chr6_2:62710707-62710726 | Msa0922980:intron | 25.0% |
! | ATGAAAAATATGAAACAGGT+TGG | + | chr6_2:62710711-62710730 | Msa0922980:intron | 25.0% |
!! | TTGTATTTCAAGTATTCTGA+AGG | - | chr6_2:62710973-62710992 | None:intergenic | 25.0% |
! | TTCAGAATACTTGAAATACA+AGG | + | chr6_2:62710972-62710991 | Msa0922980:CDS | 25.0% |
! | ATACTTGAAATACAAGGAAA+TGG | + | chr6_2:62710978-62710997 | Msa0922980:CDS | 25.0% |
!!! | AGATATTTTGATATTGACGT+AGG | - | chr6_2:62711146-62711165 | None:intergenic | 25.0% |
! | ATTGATTGACGTTCAAATTA+AGG | + | chr6_2:62711290-62711309 | Msa0922980:intron | 25.0% |
! | TTGATTGACGTTCAAATTAA+GGG | + | chr6_2:62711291-62711310 | Msa0922980:intron | 25.0% |
! | TTATTAAGCCTTAATCATCA+AGG | + | chr6_2:62711762-62711781 | Msa0922980:CDS | 25.0% |
!! | TATACCTGTTTTCAAAATTC+TGG | - | chr6_2:62712011-62712030 | None:intergenic | 25.0% |
! | ATAACAATGTTGAACATGTT+TGG | - | chr6_2:62712399-62712418 | None:intergenic | 25.0% |
!! | TTCTCTATTCATGGATATTT+TGG | + | chr6_2:62712420-62712439 | Msa0922980:CDS | 25.0% |
!! | ATCATTATTGGAATTTTGGA+CGG | - | chr6_2:62712609-62712628 | None:intergenic | 25.0% |
! | TGTATACTAGTACTTGAAAA+CGG | - | chr6_2:62712873-62712892 | None:intergenic | 25.0% |
!! | TTTCAAGTACTAGTATACAA+TGG | + | chr6_2:62712874-62712893 | Msa0922980:intron | 25.0% |
! | TGTGTAACACTATATAACAT+TGG | + | chr6_2:62712954-62712973 | Msa0922980:intron | 25.0% |
! | ACATTAGCGCAATAAAAAAA+CGG | - | chr6_2:62713280-62713299 | None:intergenic | 25.0% |
! | TGAGCAAATCTTTCTAAATA+AGG | - | chr6_2:62713466-62713485 | None:intergenic | 25.0% |
!! | TTATTTAGAAAGATTTGCTC+AGG | + | chr6_2:62713465-62713484 | Msa0922980:CDS | 25.0% |
!! | CTTGGTAGTAATATCAAATA+TGG | - | chr6_2:62713528-62713547 | None:intergenic | 25.0% |
! | CAGTATAATTTCCAATAATG+AGG | - | chr6_2:62713645-62713664 | None:intergenic | 25.0% |
! | AAATTATACTGATGGAAACT+TGG | + | chr6_2:62713654-62713673 | Msa0922980:CDS | 25.0% |
! | GTTAGTAGATAAACTCAAAT+AGG | + | chr6_2:62713936-62713955 | Msa0922980:intron | 25.0% |
!!! | AAAAGTACTAATAGAGTAGT+CGG | - | chr6_2:62714003-62714022 | None:intergenic | 25.0% |
! | ACTAGTTATGATAAAATCAG+CGG | - | chr6_2:62714178-62714197 | None:intergenic | 25.0% |
! | ACTATAAAGTAGTTCTTCAA+TGG | - | chr6_2:62714515-62714534 | None:intergenic | 25.0% |
! | TGAAGAACTACTTTATAGTA+AGG | + | chr6_2:62714516-62714535 | Msa0922980:CDS | 25.0% |
! | TAACTTGATAAGAAAGTAAG+AGG | - | chr6_2:62714572-62714591 | None:intergenic | 25.0% |
! | TAAGGTTTATATTCTAGTGT+AGG | + | chr6_2:62714641-62714660 | Msa0922980:intron | 25.0% |
! | TTGGTAAATCTTGTAATTGT+TGG | + | chr6_2:62715070-62715089 | Msa0922980:CDS | 25.0% |
! | TTTCATATTGATCCTCATAA+TGG | + | chr6_2:62715394-62715413 | Msa0922980:CDS | 25.0% |
! | AATGGTACATTTCTGATTTA+TGG | + | chr6_2:62715518-62715537 | Msa0922980:intron | 25.0% |
! | ACATTTCTGATTTATGGTTA+TGG | + | chr6_2:62715524-62715543 | Msa0922980:intron | 25.0% |
! | TTAACAAACATTCATATGGT+TGG | + | chr6_2:62715676-62715695 | Msa0922980:intron | 25.0% |
! | TTGAATATGGGATCAATTTA+TGG | + | chr6_2:62715765-62715784 | Msa0922980:CDS | 25.0% |
! | TGAATATGGGATCAATTTAT+GGG | + | chr6_2:62715766-62715785 | Msa0922980:CDS | 25.0% |
! | TAATCTTCAATTTAGGAACT+TGG | + | chr6_2:62715851-62715870 | Msa0922980:CDS | 25.0% |
! | TTTAGAGATTTCAAGAATAC+CGG | - | chr6_2:62716109-62716128 | None:intergenic | 25.0% |
!!! | GTTAGCTTAGATTCAATTTT+GGG | - | chr6_2:62716391-62716410 | None:intergenic | 25.0% |
!!! | TGTTAGCTTAGATTCAATTT+TGG | - | chr6_2:62716392-62716411 | None:intergenic | 25.0% |
!!! | GTTTTTTAGTTTGACTAATG+AGG | - | chr6_2:62716446-62716465 | None:intergenic | 25.0% |
! | AGTTACCCTAAATGAATATT+TGG | + | chr6_2:62716474-62716493 | Msa0922980:intron | 25.0% |
! | ACGTTAAAAATTGGAATGTT+CGG | - | chr6_2:62716657-62716676 | None:intergenic | 25.0% |
!!! | AGTCTCAAAGTTTTAATTGT+GGG | - | chr6_2:62716892-62716911 | None:intergenic | 25.0% |
!!! | CCATGTTAATTTTTTTGTCA+TGG | - | chr6_2:62716950-62716969 | None:intergenic | 25.0% |
! | CCATGACAAAAAAATTAACA+TGG | + | chr6_2:62716947-62716966 | Msa0922980:intron | 25.0% |
! | TCATTATCTCTCTAAGTATT+TGG | + | chr6_2:62717155-62717174 | Msa0922980:CDS | 25.0% |
! | TCATTTCAACATTGTACATT+TGG | + | chr6_2:62717318-62717337 | Msa0922980:three_prime_UTR | 25.0% |
!! | GTACATTTGGAATTAATTAG+TGG | + | chr6_2:62717331-62717350 | Msa0922980:three_prime_UTR | 25.0% |
AGCATTTCTTCATATGGAAA+CGG | - | chr6_2:62710104-62710123 | None:intergenic | 30.0% | |
AATTGAATCAGATACTGAAC+CGG | + | chr6_2:62710311-62710330 | Msa0922980:intron | 30.0% | |
CTAAAATCACACAAATTGAC+CGG | + | chr6_2:62710496-62710515 | Msa0922980:intron | 30.0% | |
CACTTCCTTCTTTAACATTA+AGG | + | chr6_2:62710687-62710706 | Msa0922980:intron | 30.0% | |
AGTGAGACTAAATCACATAA+TGG | + | chr6_2:62710753-62710772 | Msa0922980:CDS | 30.0% | |
! | AAATCACATAATGGAAGATG+TGG | + | chr6_2:62710762-62710781 | Msa0922980:CDS | 30.0% |
!! | CCTCTCATTTTTATCTTCAA+TGG | - | chr6_2:62710794-62710813 | None:intergenic | 30.0% |
CCATTGAAGATAAAAATGAG+AGG | + | chr6_2:62710791-62710810 | Msa0922980:CDS | 30.0% | |
! | AAATGAGAGGAAAAAGCTTT+TGG | + | chr6_2:62710804-62710823 | Msa0922980:CDS | 30.0% |
CTAACAGCAAAAACAACATA+TGG | - | chr6_2:62710883-62710902 | None:intergenic | 30.0% | |
!!! | CATATGTTGTTTTTGCTGTT+AGG | + | chr6_2:62710881-62710900 | Msa0922980:CDS | 30.0% |
TAAAGTGAATGCAGATGATT+TGG | + | chr6_2:62710930-62710949 | Msa0922980:CDS | 30.0% | |
AAATGGTATTTGATGAGAAG+TGG | + | chr6_2:62710995-62711014 | Msa0922980:CDS | 30.0% | |
TCCTCGAAATTGTAAACATA+GGG | + | chr6_2:62711085-62711104 | Msa0922980:intron | 30.0% | |
GACTGATCCTTATAATTTGA+AGG | + | chr6_2:62711349-62711368 | Msa0922980:intron | 30.0% | |
! | TTAACATGAGTTGAATTTGC+AGG | + | chr6_2:62711574-62711593 | Msa0922980:intron | 30.0% |
! | TAACATGAGTTGAATTTGCA+GGG | + | chr6_2:62711575-62711594 | Msa0922980:intron | 30.0% |
!!! | TGCTTTAGAGATAGATTTTG+AGG | + | chr6_2:62711611-62711630 | Msa0922980:CDS | 30.0% |
CTTTCATCTTCTATTGGAAA+AGG | + | chr6_2:62711663-62711682 | Msa0922980:CDS | 30.0% | |
! | AAGGACTTGATTTTACTACT+AGG | + | chr6_2:62711682-62711701 | Msa0922980:CDS | 30.0% |
AGAGGTAATTAAAGCCATAA+GGG | + | chr6_2:62711785-62711804 | Msa0922980:intron | 30.0% | |
TTCAATACTTGATACCCTTA+TGG | - | chr6_2:62711802-62711821 | None:intergenic | 30.0% | |
! | CTGTTTTCAAAATTCTGGTA+TGG | - | chr6_2:62712006-62712025 | None:intergenic | 30.0% |
!! | CATACCAGAATTTTGAAAAC+AGG | + | chr6_2:62712004-62712023 | Msa0922980:CDS | 30.0% |
AATAAGGAAGGATTAAAACC+TGG | - | chr6_2:62712482-62712501 | None:intergenic | 30.0% | |
!! | AGGTTTTAATCCTTCCTTAT+TGG | + | chr6_2:62712481-62712500 | Msa0922980:intron | 30.0% |
TATTTAGGAACCAATAAGGA+AGG | - | chr6_2:62712494-62712513 | None:intergenic | 30.0% | |
ATGGTATTTAGGAACCAATA+AGG | - | chr6_2:62712498-62712517 | None:intergenic | 30.0% | |
ATCTAACTACTTCTCTCAAT+AGG | + | chr6_2:62712526-62712545 | Msa0922980:intron | 30.0% | |
! | CTCTCAATAGGAACATTTTA+TGG | + | chr6_2:62712538-62712557 | Msa0922980:intron | 30.0% |
GTCCAAAATTCCAATAATGA+TGG | + | chr6_2:62712608-62712627 | Msa0922980:intron | 30.0% | |
! | GTCCATCATTATTGGAATTT+TGG | - | chr6_2:62712613-62712632 | None:intergenic | 30.0% |
ATCCGATACATTGACATAAT+CGG | + | chr6_2:62712676-62712695 | Msa0922980:intron | 30.0% | |
!! | AGCAAAGGCATTATATAGAA+AGG | - | chr6_2:62713210-62713229 | None:intergenic | 30.0% |
!!! | GAATGCTTAGTTTTGATGAT+AGG | - | chr6_2:62713370-62713389 | None:intergenic | 30.0% |
GGAACTAAAATGCATAATCT+TGG | - | chr6_2:62713546-62713565 | None:intergenic | 30.0% | |
TACCAAGATTCTTGAACTTA+TGG | + | chr6_2:62713606-62713625 | Msa0922980:CDS | 30.0% | |
ATCCATAAGTTCAAGAATCT+TGG | - | chr6_2:62713611-62713630 | None:intergenic | 30.0% | |
AAGATTCTTGAACTTATGGA+TGG | + | chr6_2:62713610-62713629 | Msa0922980:CDS | 30.0% | |
TAATTTCCAATAATGAGGTC+AGG | - | chr6_2:62713640-62713659 | None:intergenic | 30.0% | |
AAACTTGGTTTCATCCTTAA+TGG | + | chr6_2:62713669-62713688 | Msa0922980:CDS | 30.0% | |
!! | AGCTATTTTCAAAGCTATTC+TGG | + | chr6_2:62713826-62713845 | Msa0922980:intron | 30.0% |
AAACTCAAATAGGTCAATCA+AGG | + | chr6_2:62713946-62713965 | Msa0922980:intron | 30.0% | |
GTCAATCAAGGAATATTCAT+CGG | + | chr6_2:62713958-62713977 | Msa0922980:intron | 30.0% | |
ATGAAGATTCAGATGCTAAA+TGG | + | chr6_2:62714088-62714107 | Msa0922980:CDS | 30.0% | |
!!! | TGTTTTTTGTATCATCAGCA+AGG | + | chr6_2:62714315-62714334 | Msa0922980:intron | 30.0% |
CGACGATATAAAATAGTTGA+AGG | + | chr6_2:62714616-62714635 | Msa0922980:intron | 30.0% | |
TCGTCGAATTAAAATGTGTT+TGG | + | chr6_2:62714927-62714946 | Msa0922980:intron | 30.0% | |
GAAACCTATAATCTTCTCAA+TGG | + | chr6_2:62714976-62714995 | Msa0922980:CDS | 30.0% | |
GACAAAGTGAAAAACATTAG+CGG | + | chr6_2:62715007-62715026 | Msa0922980:CDS | 30.0% | |
GTAAATCTTGTAATTGTTGG+AGG | + | chr6_2:62715073-62715092 | Msa0922980:CDS | 30.0% | |
ATGAAAGAATACAAACTGCA+AGG | + | chr6_2:62715163-62715182 | Msa0922980:CDS | 30.0% | |
! | ATTGATTCATCTCCATTATG+AGG | - | chr6_2:62715409-62715428 | None:intergenic | 30.0% |
GTCTTCAAAGAATCAATGAA+TGG | + | chr6_2:62715500-62715519 | Msa0922980:CDS | 30.0% | |
TACGAAAGTGACAGTTAAAA+AGG | + | chr6_2:62715625-62715644 | Msa0922980:intron | 30.0% | |
! | GTTTTCTTTGTAGCTATACA+TGG | + | chr6_2:62715721-62715740 | Msa0922980:intron | 30.0% |
!! | TGCAAACAAAGTGTTGAATA+TGG | + | chr6_2:62715752-62715771 | Msa0922980:CDS | 30.0% |
!! | GCAAACAAAGTGTTGAATAT+GGG | + | chr6_2:62715753-62715772 | Msa0922980:CDS | 30.0% |
GTTGAACAAAGAACAAAAGT+TGG | + | chr6_2:62715800-62715819 | Msa0922980:CDS | 30.0% | |
AATGAACACAAAATTGCTTC+CGG | + | chr6_2:62716052-62716071 | Msa0922980:intron | 30.0% | |
!!! | TTTTTTTGAGGGATTTCTTC+CGG | + | chr6_2:62716087-62716106 | Msa0922980:intron | 30.0% |
TTGAATCTAAGCTAACATCA+AGG | + | chr6_2:62716395-62716414 | Msa0922980:CDS | 30.0% | |
!!! | CAGTCTCAAAGTTTTAATTG+TGG | - | chr6_2:62716893-62716912 | None:intergenic | 30.0% |
AGTCGTTATAATTATGCCAT+AGG | + | chr6_2:62716922-62716941 | Msa0922980:intron | 30.0% | |
GTCGTTATAATTATGCCATA+GGG | + | chr6_2:62716923-62716942 | Msa0922980:intron | 30.0% | |
! | ACTTTATGAATCTTTTGCAG+TGG | + | chr6_2:62717036-62717055 | Msa0922980:intron | 30.0% |
ATCTTTATTCTGGATTACGT+TGG | + | chr6_2:62717100-62717119 | Msa0922980:CDS | 30.0% | |
ATGAACATAAAAGCAATTCC+TGG | - | chr6_2:62717132-62717151 | None:intergenic | 30.0% | |
! | TGGCAAAGCATTTCTTCATA+TGG | - | chr6_2:62710110-62710129 | None:intergenic | 35.0% |
ATATGAAGAAATGCTTTGCC+AGG | + | chr6_2:62710109-62710128 | Msa0922980:CDS | 35.0% | |
TATAGTTGAACCAGTTCAAC+CGG | - | chr6_2:62710444-62710463 | None:intergenic | 35.0% | |
GGTTCAACTATAGTTCAATC+AGG | + | chr6_2:62710452-62710471 | Msa0922980:intron | 35.0% | |
! | TAATAGGTTGAATCGACAAC+CGG | - | chr6_2:62710518-62710537 | None:intergenic | 35.0% |
ATACATCCTAAGTTGTACAC+AGG | + | chr6_2:62710840-62710859 | Msa0922980:CDS | 35.0% | |
ACAGCAAAAACAACATATGG+TGG | - | chr6_2:62710880-62710899 | None:intergenic | 35.0% | |
TTAACATATTCCCAGAAACC+TGG | - | chr6_2:62710913-62710932 | None:intergenic | 35.0% | |
GTCCTCGAAATTGTAAACAT+AGG | + | chr6_2:62711084-62711103 | Msa0922980:intron | 35.0% | |
TGACTCTTTGATAAGGCAAA+TGG | + | chr6_2:62711416-62711435 | Msa0922980:intron | 35.0% | |
TCCATGAAATGTTAGTTCCA+TGG | + | chr6_2:62711439-62711458 | Msa0922980:intron | 35.0% | |
CTCCAGAGAAATTTGAACTT+CGG | - | chr6_2:62711485-62711504 | None:intergenic | 35.0% | |
ATGGCACTTTCATCTTCTAT+TGG | + | chr6_2:62711657-62711676 | Msa0922980:CDS | 35.0% | |
! | TTACCTCTCCTTGATGATTA+AGG | - | chr6_2:62711773-62711792 | None:intergenic | 35.0% |
GAGAGGTAATTAAAGCCATA+AGG | + | chr6_2:62711784-62711803 | Msa0922980:intron | 35.0% | |
!! | TTCAATGCTTTCTGAAGCTT+TGG | - | chr6_2:62711943-62711962 | None:intergenic | 35.0% |
ATGAAACACTGACAATGACA+TGG | + | chr6_2:62712064-62712083 | Msa0922980:intron | 35.0% | |
!!! | GATTTTTGTTTTCTGTGAGC+AGG | + | chr6_2:62712244-62712263 | Msa0922980:intron | 35.0% |
TAGAGAATGGGGATTTGATA+AGG | + | chr6_2:62712269-62712288 | Msa0922980:CDS | 35.0% | |
AGAGAATGGGGATTTGATAA+GGG | + | chr6_2:62712270-62712289 | Msa0922980:CDS | 35.0% | |
AGCAGGAGATCCAATTAAAA+TGG | + | chr6_2:62712353-62712372 | Msa0922980:CDS | 35.0% | |
!! | AAATGGAATCACTTTTCAGC+AGG | + | chr6_2:62712370-62712389 | Msa0922980:CDS | 35.0% |
! | CACCGATTATGTCAATGTAT+CGG | - | chr6_2:62712681-62712700 | None:intergenic | 35.0% |
ACGGCTCAAAATACAAAACA+CGG | - | chr6_2:62712854-62712873 | None:intergenic | 35.0% | |
!! | TTTTCTTTATTGGGACTAGC+AGG | + | chr6_2:62712999-62713018 | Msa0922980:intron | 35.0% |
TCCTTAATGGCTTCTAAACT+TGG | + | chr6_2:62713682-62713701 | Msa0922980:CDS | 35.0% | |
ACCAAGTTTAGAAGCCATTA+AGG | - | chr6_2:62713686-62713705 | None:intergenic | 35.0% | |
!! | TTCTAAACTTGGTGTAACTC+AGG | + | chr6_2:62713693-62713712 | Msa0922980:CDS | 35.0% |
AAGCATTTGTGAGACTGTTT+GGG | - | chr6_2:62713914-62713933 | None:intergenic | 35.0% | |
TAAGCATTTGTGAGACTGTT+TGG | - | chr6_2:62713915-62713934 | None:intergenic | 35.0% | |
! | CTTGTATCCATATTGACTGA+AGG | + | chr6_2:62714032-62714051 | Msa0922980:intron | 35.0% |
AGTACATACCAAGAAATTGC+TGG | + | chr6_2:62714195-62714214 | Msa0922980:CDS | 35.0% | |
TTTGTATCATCAGCAAGGAT+AGG | + | chr6_2:62714320-62714339 | Msa0922980:intron | 35.0% | |
TAAAGTAGTTCTTCAATGGC+AGG | - | chr6_2:62714511-62714530 | None:intergenic | 35.0% | |
CTTGATAAGAAAGTAAGAGG+AGG | - | chr6_2:62714569-62714588 | None:intergenic | 35.0% | |
TCGTTACTATAATATGCGAG+TGG | - | chr6_2:62714599-62714618 | None:intergenic | 35.0% | |
CTTGCCATTGAGAAGATTAT+AGG | - | chr6_2:62714983-62715002 | None:intergenic | 35.0% | |
CTATAATCTTCTCAATGGCA+AGG | + | chr6_2:62714981-62715000 | Msa0922980:CDS | 35.0% | |
! | TCTCTGTCTTTCGATTTTGA+TGG | - | chr6_2:62715109-62715128 | None:intergenic | 35.0% |
ATCGAAAGACAGAGAAGAAA+CGG | + | chr6_2:62715114-62715133 | Msa0922980:CDS | 35.0% | |
CAAACTGATAGATATCGCAA+CGG | + | chr6_2:62715208-62715227 | Msa0922980:CDS | 35.0% | |
! | TTTTGGTCTAACAGTCATTG+AGG | + | chr6_2:62715294-62715313 | Msa0922980:CDS | 35.0% |
!! | CCTTGATTTGTTGCAAAAGT+TGG | - | chr6_2:62715337-62715356 | None:intergenic | 35.0% |
! | CCAACTTTTGCAACAAATCA+AGG | + | chr6_2:62715334-62715353 | Msa0922980:CDS | 35.0% |
! | ACTTTTGCAACAAATCAAGG+CGG | + | chr6_2:62715337-62715356 | Msa0922980:CDS | 35.0% |
! | TGGAACATAATGTCTAAAGC+TGG | + | chr6_2:62715478-62715497 | Msa0922980:CDS | 35.0% |
TGACAGTTAAAAAGGAACAG+AGG | + | chr6_2:62715633-62715652 | Msa0922980:intron | 35.0% | |
GACAGTTAAAAAGGAACAGA+GGG | + | chr6_2:62715634-62715653 | Msa0922980:intron | 35.0% | |
! | TGGGATCAATTTATGGGTTT+TGG | + | chr6_2:62715772-62715791 | Msa0922980:CDS | 35.0% |
CAAAGAACAAAAGTTGGCAA+AGG | + | chr6_2:62715806-62715825 | Msa0922980:CDS | 35.0% | |
GGAAAATTTCATTGCTTTGC+AGG | + | chr6_2:62716219-62716238 | Msa0922980:intron | 35.0% | |
!! | AAGAAAGGTACCAATTCCTA+AGG | + | chr6_2:62716243-62716262 | Msa0922980:CDS | 35.0% |
! | AGCTTAGATTCAATTTTGGG+TGG | - | chr6_2:62716388-62716407 | None:intergenic | 35.0% |
AGGCTAGTGACGTTAAAAAT+TGG | - | chr6_2:62716666-62716685 | None:intergenic | 35.0% | |
!!! | TTTTTTTGTCATGGTCCCTA+TGG | - | chr6_2:62716941-62716960 | None:intergenic | 35.0% |
CAAAGTGGTGATCTTTATTC+TGG | + | chr6_2:62717090-62717109 | Msa0922980:CDS | 35.0% | |
CTTGAAGTAGAAGCCATTTG+AGG | - | chr6_2:62710021-62710040 | None:intergenic | 40.0% | |
!! | ATGGAAACGGCTTTGTTTCA+AGG | - | chr6_2:62710091-62710110 | None:intergenic | 40.0% |
ATAGTTGAACCAGTTCAACC+GGG | - | chr6_2:62710443-62710462 | None:intergenic | 40.0% | |
!! | TGAAACAGGTTGGTTGCAAA+TGG | + | chr6_2:62710721-62710740 | Msa0922980:intron | 40.0% |
!! | GAAACAGGTTGGTTGCAAAT+GGG | + | chr6_2:62710722-62710741 | Msa0922980:intron | 40.0% |
! | TGAGAGGAAAAAGCTTTTGG+AGG | + | chr6_2:62710807-62710826 | Msa0922980:CDS | 40.0% |
! | GAGAGGAAAAAGCTTTTGGA+GGG | + | chr6_2:62710808-62710827 | Msa0922980:CDS | 40.0% |
!! | AAGCTTTTGGAGGGCTTATT+CGG | + | chr6_2:62710817-62710836 | Msa0922980:CDS | 40.0% |
TATTCCCAGAAACCTGGATT+AGG | - | chr6_2:62710907-62710926 | None:intergenic | 40.0% | |
! | GCAGATGATTTGGAAGTAGA+TGG | + | chr6_2:62710940-62710959 | Msa0922980:CDS | 40.0% |
GCCCTATGTTTACAATTTCG+AGG | - | chr6_2:62711089-62711108 | None:intergenic | 40.0% | |
GCCATGGAACTAACATTTCA+TGG | - | chr6_2:62711443-62711462 | None:intergenic | 40.0% | |
AATTTGAACTTCGGCCCTTA+CGG | - | chr6_2:62711476-62711495 | None:intergenic | 40.0% | |
TGATTTCACCACACCTCATA+TGG | + | chr6_2:62711638-62711657 | Msa0922980:CDS | 40.0% | |
!! | GAAGATGAAAGTGCCATATG+AGG | - | chr6_2:62711654-62711673 | None:intergenic | 40.0% |
AAGCCTTAATCATCAAGGAG+AGG | + | chr6_2:62711767-62711786 | Msa0922980:CDS | 40.0% | |
TGTGAGCAGGTTTAGAGAAT+GGG | + | chr6_2:62712257-62712276 | Msa0922980:intron | 40.0% | |
GACAATGAGAATGCTTTCTG+AGG | + | chr6_2:62712323-62712342 | Msa0922980:CDS | 40.0% | |
! | TTTCAAATACTGGTCTACGG+TGG | - | chr6_2:62712585-62712604 | None:intergenic | 40.0% |
! | GGCTTTCAAATACTGGTCTA+CGG | - | chr6_2:62712588-62712607 | None:intergenic | 40.0% |
TTTGGACGGCTTTCAAATAC+TGG | - | chr6_2:62712595-62712614 | None:intergenic | 40.0% | |
GAAACGTCGTCCATCATTAT+TGG | - | chr6_2:62712621-62712640 | None:intergenic | 40.0% | |
ATGTATCGGATGTTGCAACA+AGG | - | chr6_2:62712667-62712686 | None:intergenic | 40.0% | |
!! | TGACATAATCGGTGTCAGTT+TGG | + | chr6_2:62712687-62712706 | Msa0922980:intron | 40.0% |
!! | GACTGAGACTTTGACTTGAT+TGG | - | chr6_2:62712791-62712810 | None:intergenic | 40.0% |
! | GGACTGTGAACTTCTACTTT+TGG | + | chr6_2:62712824-62712843 | Msa0922980:intron | 40.0% |
! | CTCCAAAAGATTGAGTTGCA+AGG | + | chr6_2:62713066-62713085 | Msa0922980:CDS | 40.0% |
! | GAATCTGAGGCTTCACATTA+AGG | - | chr6_2:62713092-62713111 | None:intergenic | 40.0% |
TAGCATACCACAAGAATCTG+AGG | - | chr6_2:62713105-62713124 | None:intergenic | 40.0% | |
CCTTTGCTCATATGTTTCAC+CGG | + | chr6_2:62713222-62713241 | Msa0922980:intron | 40.0% | |
! | GTAAGTTTTCATCTGCATGC+CGG | - | chr6_2:62713244-62713263 | None:intergenic | 40.0% |
GTCTGATACCGAATGCAAAA+GGG | + | chr6_2:62713320-62713339 | Msa0922980:CDS | 40.0% | |
! | CATGTTGTCCCTTTTGCATT+CGG | - | chr6_2:62713331-62713350 | None:intergenic | 40.0% |
ACATTCTTAGAGTCCCTTTC+TGG | + | chr6_2:62713392-62713411 | Msa0922980:CDS | 40.0% | |
AGAAGGGAATTCTATCCCAA+TGG | + | chr6_2:62713419-62713438 | Msa0922980:CDS | 40.0% | |
GAAGGGAATTCTATCCCAAT+GGG | + | chr6_2:62713420-62713439 | Msa0922980:CDS | 40.0% | |
GGAAAACCTGACCTCATTAT+TGG | + | chr6_2:62713631-62713650 | Msa0922980:CDS | 40.0% | |
!! | GTGTAACTCAGGTTAGCTTA+TGG | + | chr6_2:62713704-62713723 | Msa0922980:intron | 40.0% |
AGACTGTTTGGGAGAGTTTA+TGG | - | chr6_2:62713903-62713922 | None:intergenic | 40.0% | |
ATGGTTGCCTTCAGTCAATA+TGG | - | chr6_2:62714042-62714061 | None:intergenic | 40.0% | |
CATACCAAGAAATTGCTGGA+AGG | + | chr6_2:62714199-62714218 | Msa0922980:CDS | 40.0% | |
TCAACCTTCCAGCAATTTCT+TGG | - | chr6_2:62714206-62714225 | None:intergenic | 40.0% | |
TTTGCTTCTTCTCGGTGAAA+GGG | - | chr6_2:62714471-62714490 | None:intergenic | 40.0% | |
GGTCAATCTTTGCTTCTTCT+CGG | - | chr6_2:62714479-62714498 | None:intergenic | 40.0% | |
! | TTCAATGGCAGGTTGAAAAG+CGG | - | chr6_2:62714500-62714519 | None:intergenic | 40.0% |
GAACAAGAGACTAAGAAGCT+TGG | + | chr6_2:62715051-62715070 | Msa0922980:CDS | 40.0% | |
! | CTTTTGTGTCTGCGATACAT+CGG | - | chr6_2:62715243-62715262 | None:intergenic | 40.0% |
CCATCAACAATGATTTCAGC+TGG | - | chr6_2:62715364-62715383 | None:intergenic | 40.0% | |
CCAGCTGAAATCATTGTTGA+TGG | + | chr6_2:62715361-62715380 | Msa0922980:CDS | 40.0% | |
!! | ATCATTGTTGATGGTGTCTC+AGG | + | chr6_2:62715370-62715389 | Msa0922980:CDS | 40.0% |
GACATTATGTTCCAGTGTTC+AGG | - | chr6_2:62715472-62715491 | None:intergenic | 40.0% | |
!! | TCTGTTTTGAGTCGTTTCTC+TGG | + | chr6_2:62715974-62715993 | Msa0922980:intron | 40.0% |
! | TGACATTGGTTGTGGTTCTT+GGG | - | chr6_2:62716272-62716291 | None:intergenic | 40.0% |
! | TTGACATTGGTTGTGGTTCT+TGG | - | chr6_2:62716273-62716292 | None:intergenic | 40.0% |
!!! | GGAAGTAGCTTCTGCTTTTT+TGG | - | chr6_2:62716305-62716324 | None:intergenic | 40.0% |
AAAAGCAGAAGCTACTTCCA+AGG | + | chr6_2:62716306-62716325 | Msa0922980:CDS | 40.0% | |
AAAGCAGAAGCTACTTCCAA+GGG | + | chr6_2:62716307-62716326 | Msa0922980:CDS | 40.0% | |
! | ATTGTGCATTTTCGGACTCA+AGG | + | chr6_2:62716570-62716589 | Msa0922980:intron | 40.0% |
AAGATCCATGTGTGTCATGT+AGG | + | chr6_2:62716786-62716805 | Msa0922980:intron | 40.0% | |
AATAGCCTACATGACACACA+TGG | - | chr6_2:62716794-62716813 | None:intergenic | 40.0% | |
CAGTGGTGAATCTTCAAGTA+AGG | + | chr6_2:62717053-62717072 | Msa0922980:intron | 40.0% | |
GAACTAGCTGCAAAACAAAG+TGG | + | chr6_2:62717075-62717094 | Msa0922980:CDS | 40.0% | |
!! | TATGAGACAAAGGGAGTACC+TGG | - | chr6_2:62710130-62710149 | None:intergenic | 45.0% |
! | GGTTGGTTGCAAATGGGAAA+AGG | + | chr6_2:62710728-62710747 | Msa0922980:intron | 45.0% |
CATCCTAAGTTGTACACAGG+AGG | + | chr6_2:62710843-62710862 | Msa0922980:CDS | 45.0% | |
!! | TTTGCTGTTAGGCCTAATCC+AGG | + | chr6_2:62710892-62710911 | Msa0922980:CDS | 45.0% |
TTAGGCCTAATCCAGGTTTC+TGG | + | chr6_2:62710899-62710918 | Msa0922980:CDS | 45.0% | |
TAGGCCTAATCCAGGTTTCT+GGG | + | chr6_2:62710900-62710919 | Msa0922980:CDS | 45.0% | |
GGCCGAAGTTCAAATTTCTC+TGG | + | chr6_2:62711480-62711499 | Msa0922980:intron | 45.0% | |
!! | TGAAAGTGCCATATGAGGTG+TGG | - | chr6_2:62711649-62711668 | None:intergenic | 45.0% |
CTACTAGGATCTTGACCTCA+AGG | + | chr6_2:62711697-62711716 | Msa0922980:CDS | 45.0% | |
TGAACTCTCACTCAACCTTG+AGG | - | chr6_2:62711715-62711734 | None:intergenic | 45.0% | |
TGGTGTGTCTTTGTGATGTG+CGG | - | chr6_2:62711986-62712005 | None:intergenic | 45.0% | |
GATCATTGTCAGTGTCAACG+TGG | - | chr6_2:62712108-62712127 | None:intergenic | 45.0% | |
TGACACGACACGGAAACATT+TGG | - | chr6_2:62712157-62712176 | None:intergenic | 45.0% | |
CTGTGAGCAGGTTTAGAGAA+TGG | + | chr6_2:62712256-62712275 | Msa0922980:intron | 45.0% | |
GTGAGCAGGTTTAGAGAATG+GGG | + | chr6_2:62712258-62712277 | Msa0922980:intron | 45.0% | |
AATGGGGATTTGATAAGGGC+TGG | + | chr6_2:62712274-62712293 | Msa0922980:CDS | 45.0% | |
ATGGGGATTTGATAAGGGCT+GGG | + | chr6_2:62712275-62712294 | Msa0922980:CDS | 45.0% | |
!! | CTTTCTGAGGTACTAGAAGC+AGG | + | chr6_2:62712336-62712355 | Msa0922980:CDS | 45.0% |
TTTGGCCAAGCAGATGTTCT+AGG | + | chr6_2:62712438-62712457 | Msa0922980:CDS | 45.0% | |
GCAATCCTAGAACATCTGCT+TGG | - | chr6_2:62712446-62712465 | None:intergenic | 45.0% | |
ATCGGATGTTGCAACAAGGA+GGG | - | chr6_2:62712663-62712682 | None:intergenic | 45.0% | |
TATCGGATGTTGCAACAAGG+AGG | - | chr6_2:62712664-62712683 | None:intergenic | 45.0% | |
AAGTCAAAGTCTCAGTCGTG+AGG | + | chr6_2:62712794-62712813 | Msa0922980:intron | 45.0% | |
! | TCTTTATTGGGACTAGCAGG+TGG | + | chr6_2:62713002-62713021 | Msa0922980:intron | 45.0% |
! | GGCCTTGCAACTCAATCTTT+TGG | - | chr6_2:62713071-62713090 | None:intergenic | 45.0% |
TGTGAAGCCTCAGATTCTTG+TGG | + | chr6_2:62713095-62713114 | Msa0922980:CDS | 45.0% | |
CCGGTGAAACATATGAGCAA+AGG | - | chr6_2:62713225-62713244 | None:intergenic | 45.0% | |
CGTCTGATACCGAATGCAAA+AGG | + | chr6_2:62713319-62713338 | Msa0922980:CDS | 45.0% | |
TTCCCTTCTCTGTCCAGAAA+GGG | - | chr6_2:62713408-62713427 | None:intergenic | 45.0% | |
ATTCCCTTCTCTGTCCAGAA+AGG | - | chr6_2:62713409-62713428 | None:intergenic | 45.0% | |
CTTCTCCAAAGCATGAGCAA+TGG | - | chr6_2:62714061-62714080 | None:intergenic | 45.0% | |
TCACACTGCATTTACCATGC+CGG | + | chr6_2:62714360-62714379 | Msa0922980:CDS | 45.0% | |
GGAGCAGCAATGTTGAACTT+TGG | - | chr6_2:62714424-62714443 | None:intergenic | 45.0% | |
AAGTTCAACATTGCTGCTCC+AGG | + | chr6_2:62714424-62714443 | Msa0922980:CDS | 45.0% | |
TAGACAGATTGATCAGCTCC+TGG | - | chr6_2:62714445-62714464 | None:intergenic | 45.0% | |
CTTTGCTTCTTCTCGGTGAA+AGG | - | chr6_2:62714472-62714491 | None:intergenic | 45.0% | |
AACTGCAAGGTCAGTTCAGA+TGG | + | chr6_2:62715176-62715195 | Msa0922980:CDS | 45.0% | |
!! | AGGTCAGTTCAGATGGATTG+CGG | + | chr6_2:62715183-62715202 | Msa0922980:CDS | 45.0% |
CGATGTATCGCAGACACAAA+AGG | + | chr6_2:62715241-62715260 | Msa0922980:CDS | 45.0% | |
CCAAAAGCTTCATACAGTGC+TGG | - | chr6_2:62715280-62715299 | None:intergenic | 45.0% | |
! | CCAGCACTGTATGAAGCTTT+TGG | + | chr6_2:62715277-62715296 | Msa0922980:CDS | 45.0% |
GTCATTGAGGCAATGAACTG+TGG | + | chr6_2:62715307-62715326 | Msa0922980:CDS | 45.0% | |
GCAAGACTAATCCTGAACAC+TGG | + | chr6_2:62715458-62715477 | Msa0922980:CDS | 45.0% | |
CATTGCTTTGCAGGCAAGAA+AGG | + | chr6_2:62716228-62716247 | Msa0922980:intron | 45.0% | |
! | TCTTGGGGTACCTTAGGAAT+TGG | - | chr6_2:62716256-62716275 | None:intergenic | 45.0% |
! | GACATTGGTTGTGGTTCTTG+GGG | - | chr6_2:62716271-62716290 | None:intergenic | 45.0% |
! | GGAGTTGTTGACATTGGTTG+TGG | - | chr6_2:62716280-62716299 | None:intergenic | 45.0% |
TTGGCAGGAGTTGTTGACAT+TGG | - | chr6_2:62716286-62716305 | None:intergenic | 45.0% | |
!!! | GTAGCTTCTGCTTTTTTGGC+AGG | - | chr6_2:62716301-62716320 | None:intergenic | 45.0% |
AAGCAGAAGCTACTTCCAAG+GGG | + | chr6_2:62716308-62716327 | Msa0922980:CDS | 45.0% | |
! | TGAAGTACCTCAAACCCAGT+TGG | + | chr6_2:62716354-62716373 | Msa0922980:CDS | 45.0% |
! | ACTAGCCTAAACGTCCAATG+TGG | + | chr6_2:62716678-62716697 | Msa0922980:intron | 45.0% |
AACGACCTAGTTAGTGATCG+AGG | + | chr6_2:62716827-62716846 | Msa0922980:intron | 45.0% | |
ACGACCTAGTTAGTGATCGA+GGG | + | chr6_2:62716828-62716847 | Msa0922980:intron | 45.0% | |
ATGTCCCTCGATCACTAACT+AGG | - | chr6_2:62716835-62716854 | None:intergenic | 45.0% | |
GGGACATGATTGTCACAAGA+TGG | + | chr6_2:62716848-62716867 | Msa0922980:intron | 45.0% | |
!!! | TTTTTTTTCATTATAAAAAA+TGG | + | chr6_2:62711551-62711570 | Msa0922980:intron | 5.0% |
!! | CGGCTTTGTTTCAAGGCATC+AGG | - | chr6_2:62710084-62710103 | None:intergenic | 50.0% |
! | TACTGAACCGGCGAGACTTT+TGG | + | chr6_2:62710323-62710342 | Msa0922980:intron | 50.0% |
! | ACTGAACCGGCGAGACTTTT+GGG | + | chr6_2:62710324-62710343 | Msa0922980:intron | 50.0% |
CTATGACCCAAAAGTCTCGC+CGG | - | chr6_2:62710333-62710352 | None:intergenic | 50.0% | |
! | GAAAGTTGGTTGAACCGACC+CGG | + | chr6_2:62710422-62710441 | Msa0922980:intron | 50.0% |
TTGAACCAGTTCAACCGGGT+CGG | - | chr6_2:62710439-62710458 | None:intergenic | 50.0% | |
CTGCCTCCTGTGTACAACTT+AGG | - | chr6_2:62710849-62710868 | None:intergenic | 50.0% | |
TTCCGTGTCGTGTCAGTGTA+CGG | + | chr6_2:62712162-62712181 | Msa0922980:intron | 50.0% | |
TGGGGATTTGATAAGGGCTG+GGG | + | chr6_2:62712276-62712295 | Msa0922980:CDS | 50.0% | |
!! | GTTCTAGGATTGCCAGACAC+TGG | + | chr6_2:62712453-62712472 | Msa0922980:CDS | 50.0% |
TCTCAGTCGTGAGGACAAAG+AGG | + | chr6_2:62712803-62712822 | Msa0922980:intron | 50.0% | |
CGCTAATGTGTTGCATGCAC+AGG | + | chr6_2:62713291-62713310 | Msa0922980:intron | 50.0% | |
AGTCCCTTTCTGGACAGAGA+AGG | + | chr6_2:62713402-62713421 | Msa0922980:CDS | 50.0% | |
GTCCCTTTCTGGACAGAGAA+GGG | + | chr6_2:62713403-62713422 | Msa0922980:CDS | 50.0% | |
ATCGAATCGCGACACCCATT+GGG | - | chr6_2:62713437-62713456 | None:intergenic | 50.0% | |
TATCGAATCGCGACACCCAT+TGG | - | chr6_2:62713438-62713457 | None:intergenic | 50.0% | |
GGCAACCATTGCTCATGCTT+TGG | + | chr6_2:62714053-62714072 | Msa0922980:intron | 50.0% | |
ATCATCAGCAAGGATAGGCC+AGG | + | chr6_2:62714325-62714344 | Msa0922980:intron | 50.0% | |
TCATCAGCAAGGATAGGCCA+GGG | + | chr6_2:62714326-62714345 | Msa0922980:intron | 50.0% | |
GTGTGAGTTTCATACTGCCC+TGG | - | chr6_2:62714346-62714365 | None:intergenic | 50.0% | |
CACACTGCATTTACCATGCC+GGG | + | chr6_2:62714361-62714380 | Msa0922980:CDS | 50.0% | |
! | TGTGGTTCTTGGGGTACCTT+AGG | - | chr6_2:62716262-62716281 | None:intergenic | 50.0% |
AATGCTGCCAACTGGGTTTG+AGG | - | chr6_2:62716364-62716383 | None:intergenic | 50.0% | |
GTTCGCCACATTGGACGTTT+AGG | - | chr6_2:62716686-62716705 | None:intergenic | 50.0% | |
! | GGATTACGTTGGTTGCTTCC+AGG | + | chr6_2:62717111-62717130 | Msa0922980:CDS | 50.0% |
TTGAACCGACCCGGTTGAAC+TGG | + | chr6_2:62710431-62710450 | Msa0922980:intron | 55.0% | |
TTACGGTCACGCTCTTGCCA+TGG | - | chr6_2:62711459-62711478 | None:intergenic | 55.0% | |
! | ATGGCAAGAGCGTGACCGTA+AGG | + | chr6_2:62711458-62711477 | Msa0922980:intron | 55.0% |
! | TGGCAAGAGCGTGACCGTAA+GGG | + | chr6_2:62711459-62711478 | Msa0922980:intron | 55.0% |
GTCCGTACACTGACACGACA+CGG | - | chr6_2:62712167-62712186 | None:intergenic | 55.0% | |
CTGGGGAAACACTGCAGGAA+GGG | + | chr6_2:62712293-62712312 | Msa0922980:CDS | 55.0% | |
CTAGGATTGCCAGACACTGG+AGG | + | chr6_2:62712456-62712475 | Msa0922980:CDS | 55.0% | |
AAAACCTGGCCTCCAGTGTC+TGG | - | chr6_2:62712468-62712487 | None:intergenic | 55.0% | |
TGGTGTACCGTCTCGACATG+TGG | + | chr6_2:62712558-62712577 | Msa0922980:intron | 55.0% | |
GAGACTACGCGACAAAGTCC+CGG | - | chr6_2:62714382-62714401 | None:intergenic | 55.0% | |
GGACTTTGTCGCGTAGTCTC+TGG | + | chr6_2:62714382-62714401 | Msa0922980:CDS | 55.0% | |
ACATTAGCGGCCTAGTCGAG+TGG | + | chr6_2:62715020-62715039 | Msa0922980:CDS | 55.0% | |
TCTTCGCGAACCACTCGACT+AGG | - | chr6_2:62715033-62715052 | None:intergenic | 55.0% | |
TTGTGCTGCATCATGCCCCT+TGG | - | chr6_2:62716326-62716345 | None:intergenic | 55.0% | |
! | GGGTGGTAATGCTGCCAACT+GGG | - | chr6_2:62716371-62716390 | None:intergenic | 55.0% |
! | TGGGTGGTAATGCTGCCAAC+TGG | - | chr6_2:62716372-62716391 | None:intergenic | 55.0% |
GCAACACTCGTTCGCCACAT+TGG | - | chr6_2:62716695-62716714 | None:intergenic | 55.0% | |
AAGGGCTGGGGAAACACTGC+AGG | + | chr6_2:62712288-62712307 | Msa0922980:CDS | 60.0% | |
GCTGGGGAAACACTGCAGGA+AGG | + | chr6_2:62712292-62712311 | Msa0922980:CDS | 60.0% | |
ATTGCCAGACACTGGAGGCC+AGG | + | chr6_2:62712461-62712480 | Msa0922980:CDS | 60.0% | |
CGGTGGACCACATGTCGAGA+CGG | - | chr6_2:62712568-62712587 | None:intergenic | 60.0% | |
GGGTCGTGAGCTTCTGCTTC+TGG | - | chr6_2:62712643-62712662 | None:intergenic | 60.0% | |
TACGCGACAAAGTCCCGGCA+TGG | - | chr6_2:62714377-62714396 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 62709958 | 62717381 | 62709958 | ID=Msa0922980;Name=Msa0922980 |
chr6_2 | mRNA | 62709958 | 62717381 | 62709958 | ID=Msa0922980-mRNA-1;Parent=Msa0922980;Name=Msa0922980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=66|1|1|1|1|1|14|178|910 |
chr6_2 | exon | 62709958 | 62710130 | 62709958 | ID=Msa0922980-mRNA-1:exon:9711;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62710729 | 62711016 | 62710729 | ID=Msa0922980-mRNA-1:exon:9712;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62711596 | 62711788 | 62711596 | ID=Msa0922980-mRNA-1:exon:9713;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62711907 | 62712025 | 62711907 | ID=Msa0922980-mRNA-1:exon:9714;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62712266 | 62712482 | 62712266 | ID=Msa0922980-mRNA-1:exon:9715;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62713021 | 62713116 | 62713021 | ID=Msa0922980-mRNA-1:exon:9716;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62713313 | 62713486 | 62713313 | ID=Msa0922980-mRNA-1:exon:9717;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62713598 | 62713714 | 62713598 | ID=Msa0922980-mRNA-1:exon:9718;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62714054 | 62714220 | 62714054 | ID=Msa0922980-mRNA-1:exon:9719;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62714333 | 62714557 | 62714333 | ID=Msa0922980-mRNA-1:exon:9720;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62714955 | 62715521 | 62714955 | ID=Msa0922980-mRNA-1:exon:9721;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62715734 | 62715872 | 62715734 | ID=Msa0922980-mRNA-1:exon:9722;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62716241 | 62716416 | 62716241 | ID=Msa0922980-mRNA-1:exon:9723;Parent=Msa0922980-mRNA-1 |
chr6_2 | exon | 62717056 | 62717381 | 62717056 | ID=Msa0922980-mRNA-1:exon:9724;Parent=Msa0922980-mRNA-1 |
chr6_2 | five_prime_UTR | 62709958 | 62710023 | 62709958 | ID=Msa0922980-mRNA-1:five_prime_utr;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62710024 | 62710130 | 62710024 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62710729 | 62711016 | 62710729 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62711596 | 62711788 | 62711596 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62711907 | 62712025 | 62711907 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62712266 | 62712482 | 62712266 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62713021 | 62713116 | 62713021 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62713313 | 62713486 | 62713313 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62713598 | 62713714 | 62713598 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62714054 | 62714220 | 62714054 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62714333 | 62714557 | 62714333 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62714955 | 62715521 | 62714955 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62715734 | 62715872 | 62715734 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62716241 | 62716416 | 62716241 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | CDS | 62717056 | 62717203 | 62717056 | ID=Msa0922980-mRNA-1:cds;Parent=Msa0922980-mRNA-1 |
chr6_2 | three_prime_UTR | 62717204 | 62717381 | 62717204 | ID=Msa0922980-mRNA-1:three_prime_utr;Parent=Msa0922980-mRNA-1 |
Gene Sequence |
Protein sequence |