AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609420 MtrunA17_Chr4g0042051 95.238 126 6 0 1 126 1 126 2.31e-87 249
Msa0609420 MtrunA17_Chr2g0319291 70.492 122 36 0 1 122 1 122 1.28e-62 187
Msa0609420 MtrunA17_Chr2g0280411 59.322 118 48 0 6 123 5 122 1.38e-49 154
Msa0609420 MtrunA17_Chr7g0216481 41.237 97 57 0 17 113 33 129 3.48e-25 92.8
Msa0609420 MtrunA17_Chr7g0245141 35.294 102 66 0 12 113 26 127 1.00e-22 86.7
Msa0609420 MtrunA17_Chr1g0155721 36.893 103 65 0 8 110 4 106 4.24e-22 84.3
Msa0609420 MtrunA17_Chr3g0142051 35.455 110 67 1 1 110 1 106 8.75e-22 83.6
Msa0609420 MtrunA17_Chr8g0334481 34.343 99 65 0 15 113 31 129 2.52e-21 82.8
Msa0609420 MtrunA17_Chr5g0404831 36.449 107 68 0 8 114 6 112 3.06e-21 82.0
Msa0609420 MtrunA17_Chr5g0415771 38.938 113 65 2 4 114 13 123 1.84e-19 77.8
Msa0609420 MtrunA17_Chr8g0393201 32.075 106 72 0 8 113 225 330 1.15e-18 79.7
Msa0609420 MtrunA17_Chr5g0415761 33.333 105 70 0 10 114 20 124 4.91e-16 68.9
Msa0609420 MtrunA17_Chr5g0415741 34.286 105 69 0 10 114 18 122 1.26e-15 67.8
Msa0609420 MtrunA17_Chr1g0201781 33.721 86 55 2 35 118 81 166 2.36e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609420 AT1G11530.1 58.036 112 47 0 10 121 2 113 1.49e-48 151
Msa0609420 AT3G51030.1 39.623 106 64 0 8 113 4 109 4.82e-24 89.4
Msa0609420 AT3G08710.2 37.615 109 68 0 15 123 28 136 1.27e-23 89.4
Msa0609420 AT3G08710.3 37.615 109 68 0 15 123 28 136 1.27e-23 89.4
Msa0609420 AT3G08710.1 37.615 109 68 0 15 123 28 136 1.27e-23 89.4
Msa0609420 AT5G39950.1 37.037 108 68 0 6 113 21 128 1.59e-23 89.0
Msa0609420 AT3G56420.1 38.889 108 66 0 5 112 35 142 1.74e-23 89.4
Msa0609420 AT3G56420.2 38.889 108 66 0 5 112 35 142 1.74e-23 89.4
Msa0609420 AT3G56420.3 38.889 108 66 0 5 112 35 142 1.74e-23 89.4
Msa0609420 AT1G45145.1 34.286 105 69 0 9 113 4 108 7.06e-23 86.7
Msa0609420 AT2G40790.2 36.538 104 66 0 9 112 39 142 1.13e-22 87.0
Msa0609420 AT2G40790.1 36.538 104 66 0 9 112 39 142 1.13e-22 87.0
Msa0609420 AT1G59730.1 34.615 104 68 0 12 115 23 126 1.39e-21 83.6
Msa0609420 AT5G42980.1 34.906 106 69 0 9 114 4 109 1.70e-19 78.2
Msa0609420 AT1G19730.1 31.776 107 72 1 8 113 4 110 1.01e-18 76.3
Msa0609420 AT1G69880.1 29.524 105 74 0 12 116 39 143 3.20e-17 73.2
Msa0609420 AT3G17880.2 34.211 114 71 1 11 124 264 373 6.06e-16 72.8
Msa0609420 AT3G17880.1 34.211 114 71 1 11 124 271 380 7.06e-16 72.8
Msa0609420 AT2G35010.2 30.841 107 72 1 12 116 86 192 2.66e-12 61.2
Msa0609420 AT2G35010.1 30.841 107 72 1 12 116 86 192 2.66e-12 61.2

Find 43 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTAATTGCAACTTAATT+TGG 0.183348 4_2:-56763105 Msa0609420:five_prime_UTR
CAATTGTTGTCTTATTTATA+AGG 0.224668 4_2:-56762995 Msa0609420:five_prime_UTR
ACTTACAAGGCAACCTTTAT+TGG 0.239798 4_2:+56762780 None:intergenic
TTTGAATAAGTAGAAAATAA+TGG 0.298106 4_2:-56762884 Msa0609420:exon
GTGCAAATCCTGATGAAATT+AGG 0.320699 4_2:-56761398 Msa0609420:CDS
TTGAATAAGTAGAAAATAAT+GGG 0.330575 4_2:-56762883 Msa0609420:exon
TCCTCCACTCATCAACAAAA+AGG 0.360970 4_2:+56761443 None:intergenic
ATCACTGAAGCTACCAATAA+AGG 0.364334 4_2:-56762793 Msa0609420:CDS
GTGATTTGGAGGAATGAGTT+TGG 0.374475 4_2:+56761352 None:intergenic
CATGGCATTGATTTCCAACT+TGG 0.380007 4_2:+56761470 None:intergenic
CATGAGCATAGCTGAAGAAT+TGG 0.386956 4_2:-56763071 Msa0609420:five_prime_UTR
CATCATCCATCAGAGTGATT+TGG 0.391841 4_2:+56761338 None:intergenic
GGTGGATGTGGACGAAGTTA+AGG 0.395797 4_2:-56762503 Msa0609420:intron
TATAACCAATCTTATCTAGC+TGG 0.426879 4_2:+56763035 None:intergenic
CTGAAGAATTGGTAACATAA+TGG 0.428650 4_2:-56763060 Msa0609420:five_prime_UTR
GATGCTAATTCTTCAAAGAA+AGG 0.438089 4_2:+56762553 None:intergenic
GGCATTGATTTCCAACTTGG+AGG 0.441850 4_2:+56761473 None:intergenic
CAGAAAGAGGACATCTTGAT+AGG 0.447661 4_2:+56762528 None:intergenic
AAAGGGTTCATAGCAATAGA+AGG 0.450955 4_2:+56762571 None:intergenic
CCTCTTTCTGAAGGTGGATG+TGG 0.473122 4_2:-56762515 Msa0609420:CDS
ATAACCAATCTTATCTAGCT+GGG 0.488311 4_2:+56763036 None:intergenic
GCACCAACAGCTTTCTCCAC+TGG 0.488674 4_2:+56761417 None:intergenic
ATGCTAATTCTTCAAAGAAA+GGG 0.500184 4_2:+56762554 None:intergenic
TTGTGTATATATACAAACTC+TGG 0.503825 4_2:+56762915 None:intergenic
CCACATCCACCTTCAGAAAG+AGG 0.505638 4_2:+56762515 None:intergenic
ATCCTGATGAAATTAGGAAA+AGG 0.511549 4_2:-56761392 Msa0609420:CDS
CATCCATCAGAGTGATTTGG+AGG 0.522008 4_2:+56761341 None:intergenic
ATTCCTCCAAATCACTCTGA+TGG 0.522941 4_2:-56761344 Msa0609420:exon
TGGCCCCAGCTAGATAAGAT+TGG 0.526897 4_2:-56763040 Msa0609420:five_prime_UTR
ACAGTATATATAGTTTGTGT+AGG 0.531357 4_2:-56762954 Msa0609420:five_prime_UTR
AAATTGACTCAAGAAAATCA+TGG 0.550454 4_2:-56762825 Msa0609420:CDS
AATTGACTCAAGAAAATCAT+GGG 0.553360 4_2:-56762824 Msa0609420:CDS
TATTGGTAGCTTCAGTGATG+TGG 0.558401 4_2:+56762797 None:intergenic
TCAAGATGTCCTCTTTCTGA+AGG 0.562276 4_2:-56762524 Msa0609420:CDS
ATTCTTCAGCTATGCTCATG+TGG 0.565681 4_2:+56763074 None:intergenic
AGATGTCCTCTTTCTGAAGG+TGG 0.570239 4_2:-56762521 Msa0609420:CDS
TGATGAAATTAGGAAAAGGA+TGG 0.577508 4_2:-56761388 Msa0609420:CDS
CTAGGAAGTAGCCTCCAAGT+TGG 0.602024 4_2:-56761484 Msa0609420:intron
AATCCAGTGGAGAAAGCTGT+TGG 0.602305 4_2:-56761420 Msa0609420:CDS
AAAGAGGACATCTTGATAGG+TGG 0.610226 4_2:+56762531 None:intergenic
TAGAATATATATCATTACAC+AGG 0.640409 4_2:+56761234 None:intergenic
TAACCAATCTTATCTAGCTG+GGG 0.641666 4_2:+56763037 None:intergenic
GATGAGTGGAGGAAATCCAG+TGG 0.727295 4_2:-56761433 Msa0609420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATATAGTTATATTAAT+AGG - chr4_2:56761771-56761790 Msa0609420:intron 10.0%
!! TAAATAAAAAAATACATGTA+GGG - chr4_2:56762726-56762745 Msa0609420:intron 10.0%
!! ATTACATAACATATTATTAT+TGG + chr4_2:56762827-56762846 None:intergenic 10.0%
!! ATCTATATAGTTATATTAAT+AGG - chr4_2:56761771-56761790 Msa0609420:intron 10.0%
!! TAAATAAAAAAATACATGTA+GGG - chr4_2:56762726-56762745 Msa0609420:intron 10.0%
!! ATTACATAACATATTATTAT+TGG + chr4_2:56762827-56762846 None:intergenic 10.0%
!!! TATTTTCTACTTATTCAAAA+GGG + chr4_2:56761543-56761562 None:intergenic 15.0%
!!! TTATTTTCTACTTATTCAAA+AGG + chr4_2:56761544-56761563 None:intergenic 15.0%
!! TTTGAATAAGTAGAAAATAA+TGG - chr4_2:56761544-56761563 Msa0609420:intron 15.0%
!! TTGAATAAGTAGAAAATAAT+GGG - chr4_2:56761545-56761564 Msa0609420:intron 15.0%
!! CATGTAAAATTATAACAATT+GGG - chr4_2:56761718-56761737 Msa0609420:intron 15.0%
!! TTTAAAAACACAAATGAAAA+AGG + chr4_2:56761984-56762003 None:intergenic 15.0%
!! AATAAACAATTTGAGAATAT+TGG + chr4_2:56762318-56762337 None:intergenic 15.0%
!! ACAAATTATATTGAAACAAA+AGG + chr4_2:56762569-56762588 None:intergenic 15.0%
!!! AATATAATTTGTGAATTTTC+TGG - chr4_2:56762577-56762596 Msa0609420:CDS 15.0%
!! CTAAATAAAAAAATACATGT+AGG - chr4_2:56762725-56762744 Msa0609420:intron 15.0%
!!! TATTTTCTACTTATTCAAAA+GGG + chr4_2:56761543-56761562 None:intergenic 15.0%
!!! TTATTTTCTACTTATTCAAA+AGG + chr4_2:56761544-56761563 None:intergenic 15.0%
!! TTTGAATAAGTAGAAAATAA+TGG - chr4_2:56761544-56761563 Msa0609420:intron 15.0%
!! TTGAATAAGTAGAAAATAAT+GGG - chr4_2:56761545-56761564 Msa0609420:intron 15.0%
!! CATGTAAAATTATAACAATT+GGG - chr4_2:56761718-56761737 Msa0609420:intron 15.0%
!! TTTAAAAACACAAATGAAAA+AGG + chr4_2:56761984-56762003 None:intergenic 15.0%
!! AATAAACAATTTGAGAATAT+TGG + chr4_2:56762318-56762337 None:intergenic 15.0%
!! ACAAATTATATTGAAACAAA+AGG + chr4_2:56762569-56762588 None:intergenic 15.0%
!!! AATATAATTTGTGAATTTTC+TGG - chr4_2:56762577-56762596 Msa0609420:CDS 15.0%
!! CTAAATAAAAAAATACATGT+AGG - chr4_2:56762725-56762744 Msa0609420:intron 15.0%
!!! CAATTGTTGTCTTATTTATA+AGG - chr4_2:56761433-56761452 Msa0609420:CDS 20.0%
!!! TAAAATTGATGATACTTACA+AGG + chr4_2:56761664-56761683 None:intergenic 20.0%
!!! TGTAAGTATCATCAATTTTA+TGG - chr4_2:56761664-56761683 Msa0609420:intron 20.0%
!! GCATGTAAAATTATAACAAT+TGG - chr4_2:56761717-56761736 Msa0609420:intron 20.0%
!! TTTGTTCATAAAATATTTGC+AGG - chr4_2:56761802-56761821 Msa0609420:intron 20.0%
!!! GAAGTTAAGGTAATTTTTTA+TGG - chr4_2:56761938-56761957 Msa0609420:intron 20.0%
!! ATGCCATTATTATAAGTTAA+AGG + chr4_2:56762428-56762447 None:intergenic 20.0%
!! AATTATATTGAAACAAAAGG+TGG + chr4_2:56762566-56762585 None:intergenic 20.0%
!!! ATTAGTTTAGAAAATAAGCA+TGG + chr4_2:56762705-56762724 None:intergenic 20.0%
!!! CAATTGTTGTCTTATTTATA+AGG - chr4_2:56761433-56761452 Msa0609420:CDS 20.0%
!!! TAAAATTGATGATACTTACA+AGG + chr4_2:56761664-56761683 None:intergenic 20.0%
!!! TGTAAGTATCATCAATTTTA+TGG - chr4_2:56761664-56761683 Msa0609420:intron 20.0%
!! GCATGTAAAATTATAACAAT+TGG - chr4_2:56761717-56761736 Msa0609420:intron 20.0%
!! TTTGTTCATAAAATATTTGC+AGG - chr4_2:56761802-56761821 Msa0609420:intron 20.0%
!!! GAAGTTAAGGTAATTTTTTA+TGG - chr4_2:56761938-56761957 Msa0609420:intron 20.0%
!! ATGCCATTATTATAAGTTAA+AGG + chr4_2:56762428-56762447 None:intergenic 20.0%
!! AATTATATTGAAACAAAAGG+TGG + chr4_2:56762566-56762585 None:intergenic 20.0%
!!! ATTAGTTTAGAAAATAAGCA+TGG + chr4_2:56762705-56762724 None:intergenic 20.0%
! TGTCTAATTGCAACTTAATT+TGG - chr4_2:56761323-56761342 Msa0609420:three_prime_UTR 25.0%
!! ACAGTATATATAGTTTGTGT+AGG - chr4_2:56761474-56761493 Msa0609420:CDS 25.0%
! TTGTGTATATATACAAACTC+TGG + chr4_2:56761516-56761535 None:intergenic 25.0%
!! AAATTGACTCAAGAAAATCA+TGG - chr4_2:56761603-56761622 Msa0609420:intron 25.0%
!! AATTGACTCAAGAAAATCAT+GGG - chr4_2:56761604-56761623 Msa0609420:intron 25.0%
! TTATAACAATTGGGTGATTA+TGG - chr4_2:56761727-56761746 Msa0609420:intron 25.0%
! CATAAAATATTTGCAGGTTA+TGG - chr4_2:56761808-56761827 Msa0609420:intron 25.0%
! ATGCTAATTCTTCAAAGAAA+GGG + chr4_2:56761877-56761896 None:intergenic 25.0%
!!! AGGTAATTTTTTATGGTCTA+TGG - chr4_2:56761945-56761964 Msa0609420:intron 25.0%
!!! TAATTTTTTATGGTCTATGG+AGG - chr4_2:56761948-56761967 Msa0609420:intron 25.0%
!!! AATTTTTTATGGTCTATGGA+GGG - chr4_2:56761949-56761968 Msa0609420:intron 25.0%
!! ACGCTTTCAATTTAAAATGT+CGG + chr4_2:56762045-56762064 None:intergenic 25.0%
! AAACTAACATGTAGTTTCTT+TGG + chr4_2:56762236-56762255 None:intergenic 25.0%
!! GAGCCTTTAACTTATAATAA+TGG - chr4_2:56762422-56762441 Msa0609420:intron 25.0%
! TTGTAGATGATATCAATATG+TGG - chr4_2:56762456-56762475 Msa0609420:intron 25.0%
!! CTTTTATCATCATCCTTTTT+AGG - chr4_2:56762496-56762515 Msa0609420:intron 25.0%
!! ATGGAAGAAACTGTTTATTT+TGG - chr4_2:56762639-56762658 Msa0609420:intron 25.0%
!! TTAACTAACTACCTTTTGTT+TGG - chr4_2:56762894-56762913 Msa0609420:five_prime_UTR 25.0%
! TGTCTAATTGCAACTTAATT+TGG - chr4_2:56761323-56761342 Msa0609420:three_prime_UTR 25.0%
!! ACAGTATATATAGTTTGTGT+AGG - chr4_2:56761474-56761493 Msa0609420:CDS 25.0%
! TTGTGTATATATACAAACTC+TGG + chr4_2:56761516-56761535 None:intergenic 25.0%
!! AAATTGACTCAAGAAAATCA+TGG - chr4_2:56761603-56761622 Msa0609420:intron 25.0%
!! AATTGACTCAAGAAAATCAT+GGG - chr4_2:56761604-56761623 Msa0609420:intron 25.0%
! TTATAACAATTGGGTGATTA+TGG - chr4_2:56761727-56761746 Msa0609420:intron 25.0%
! CATAAAATATTTGCAGGTTA+TGG - chr4_2:56761808-56761827 Msa0609420:intron 25.0%
! ATGCTAATTCTTCAAAGAAA+GGG + chr4_2:56761877-56761896 None:intergenic 25.0%
!!! AGGTAATTTTTTATGGTCTA+TGG - chr4_2:56761945-56761964 Msa0609420:intron 25.0%
!!! TAATTTTTTATGGTCTATGG+AGG - chr4_2:56761948-56761967 Msa0609420:intron 25.0%
!!! AATTTTTTATGGTCTATGGA+GGG - chr4_2:56761949-56761968 Msa0609420:intron 25.0%
!! ACGCTTTCAATTTAAAATGT+CGG + chr4_2:56762045-56762064 None:intergenic 25.0%
! AAACTAACATGTAGTTTCTT+TGG + chr4_2:56762236-56762255 None:intergenic 25.0%
!! GAGCCTTTAACTTATAATAA+TGG - chr4_2:56762422-56762441 Msa0609420:intron 25.0%
! TTGTAGATGATATCAATATG+TGG - chr4_2:56762456-56762475 Msa0609420:intron 25.0%
!! CTTTTATCATCATCCTTTTT+AGG - chr4_2:56762496-56762515 Msa0609420:intron 25.0%
!! ATGGAAGAAACTGTTTATTT+TGG - chr4_2:56762639-56762658 Msa0609420:intron 25.0%
!! TTAACTAACTACCTTTTGTT+TGG - chr4_2:56762894-56762913 Msa0609420:five_prime_UTR 25.0%
! CTGAAGAATTGGTAACATAA+TGG - chr4_2:56761368-56761387 Msa0609420:CDS 30.0%
ATAACCAATCTTATCTAGCT+GGG + chr4_2:56761395-56761414 None:intergenic 30.0%
TATAACCAATCTTATCTAGC+TGG + chr4_2:56761396-56761415 None:intergenic 30.0%
!! TGGTTCATTTTTCTGCTTAT+TGG - chr4_2:56761828-56761847 Msa0609420:intron 30.0%
GATGCTAATTCTTCAAAGAA+AGG + chr4_2:56761878-56761897 None:intergenic 30.0%
!!! ATTTTTTATGGTCTATGGAG+GGG - chr4_2:56761950-56761969 Msa0609420:intron 30.0%
! AAACTGAAAGTTTAGTTCGT+TGG + chr4_2:56762116-56762135 None:intergenic 30.0%
! CAGTTCAAAAAAGTACAGTT+CGG - chr4_2:56762176-56762195 Msa0609420:intron 30.0%
TATGATATCTCCTTCTATGT+TGG - chr4_2:56762255-56762274 Msa0609420:intron 30.0%
!! TTATCATCATCCTTTTTAGG+TGG - chr4_2:56762499-56762518 Msa0609420:intron 30.0%
! ATGCCAATTTTTATGTTGAG+TGG - chr4_2:56762606-56762625 Msa0609420:CDS 30.0%
TCTCCACTCAACATAAAAAT+TGG + chr4_2:56762612-56762631 None:intergenic 30.0%
ATCCTGATGAAATTAGGAAA+AGG - chr4_2:56763036-56763055 Msa0609420:five_prime_UTR 30.0%
! ATCCTTTTCCTAATTTCATC+AGG + chr4_2:56763041-56763060 None:intergenic 30.0%
TGATGAAATTAGGAAAAGGA+TGG - chr4_2:56763040-56763059 Msa0609420:five_prime_UTR 30.0%
! CTGAAGAATTGGTAACATAA+TGG - chr4_2:56761368-56761387 Msa0609420:CDS 30.0%
ATAACCAATCTTATCTAGCT+GGG + chr4_2:56761395-56761414 None:intergenic 30.0%
TATAACCAATCTTATCTAGC+TGG + chr4_2:56761396-56761415 None:intergenic 30.0%
!! TGGTTCATTTTTCTGCTTAT+TGG - chr4_2:56761828-56761847 Msa0609420:intron 30.0%
GATGCTAATTCTTCAAAGAA+AGG + chr4_2:56761878-56761897 None:intergenic 30.0%
!!! ATTTTTTATGGTCTATGGAG+GGG - chr4_2:56761950-56761969 Msa0609420:intron 30.0%
! AAACTGAAAGTTTAGTTCGT+TGG + chr4_2:56762116-56762135 None:intergenic 30.0%
! CAGTTCAAAAAAGTACAGTT+CGG - chr4_2:56762176-56762195 Msa0609420:intron 30.0%
TATGATATCTCCTTCTATGT+TGG - chr4_2:56762255-56762274 Msa0609420:intron 30.0%
!! TTATCATCATCCTTTTTAGG+TGG - chr4_2:56762499-56762518 Msa0609420:intron 30.0%
! ATGCCAATTTTTATGTTGAG+TGG - chr4_2:56762606-56762625 Msa0609420:CDS 30.0%
TCTCCACTCAACATAAAAAT+TGG + chr4_2:56762612-56762631 None:intergenic 30.0%
ATCCTGATGAAATTAGGAAA+AGG - chr4_2:56763036-56763055 Msa0609420:five_prime_UTR 30.0%
! ATCCTTTTCCTAATTTCATC+AGG + chr4_2:56763041-56763060 None:intergenic 30.0%
TGATGAAATTAGGAAAAGGA+TGG - chr4_2:56763040-56763059 Msa0609420:five_prime_UTR 30.0%
TAACCAATCTTATCTAGCTG+GGG + chr4_2:56761394-56761413 None:intergenic 35.0%
! TGAGTCAATTTTCACAACCT+TGG + chr4_2:56761594-56761613 None:intergenic 35.0%
ATCACTGAAGCTACCAATAA+AGG - chr4_2:56761635-56761654 Msa0609420:intron 35.0%
ACTTACAAGGCAACCTTTAT+TGG + chr4_2:56761651-56761670 None:intergenic 35.0%
AAAGGGTTCATAGCAATAGA+AGG + chr4_2:56761860-56761879 None:intergenic 35.0%
! TGCACGGATAATGGTATATA+TGG + chr4_2:56762019-56762038 None:intergenic 35.0%
!! TTTAAAATGTCGGTGTTGCA+CGG + chr4_2:56762035-56762054 None:intergenic 35.0%
!!! AGTCTCTGACATGTTTTAGT+AGG - chr4_2:56762069-56762088 Msa0609420:intron 35.0%
GTGAACTAATTGTCACAGTT+AGG - chr4_2:56762136-56762155 Msa0609420:intron 35.0%
ATCTCCTTCTATGTTGGAAA+TGG - chr4_2:56762261-56762280 Msa0609420:intron 35.0%
!!! ATCCTTTTTAGGTGGTTTCA+AGG - chr4_2:56762507-56762526 Msa0609420:CDS 35.0%
!!! TCCTTTTTAGGTGGTTTCAA+GGG - chr4_2:56762508-56762527 Msa0609420:CDS 35.0%
ACAACAATCATGCATCAAAG+AGG + chr4_2:56762850-56762869 None:intergenic 35.0%
CATAGAACAGTCCAAACAAA+AGG + chr4_2:56762908-56762927 None:intergenic 35.0%
!! TGCTTTTTGTGACTCTATCT+AGG - chr4_2:56762926-56762945 Msa0609420:five_prime_UTR 35.0%
GTGCAAATCCTGATGAAATT+AGG - chr4_2:56763030-56763049 Msa0609420:five_prime_UTR 35.0%
TAACCAATCTTATCTAGCTG+GGG + chr4_2:56761394-56761413 None:intergenic 35.0%
! TGAGTCAATTTTCACAACCT+TGG + chr4_2:56761594-56761613 None:intergenic 35.0%
ATCACTGAAGCTACCAATAA+AGG - chr4_2:56761635-56761654 Msa0609420:intron 35.0%
ACTTACAAGGCAACCTTTAT+TGG + chr4_2:56761651-56761670 None:intergenic 35.0%
AAAGGGTTCATAGCAATAGA+AGG + chr4_2:56761860-56761879 None:intergenic 35.0%
! TGCACGGATAATGGTATATA+TGG + chr4_2:56762019-56762038 None:intergenic 35.0%
!! TTTAAAATGTCGGTGTTGCA+CGG + chr4_2:56762035-56762054 None:intergenic 35.0%
!!! AGTCTCTGACATGTTTTAGT+AGG - chr4_2:56762069-56762088 Msa0609420:intron 35.0%
GTGAACTAATTGTCACAGTT+AGG - chr4_2:56762136-56762155 Msa0609420:intron 35.0%
ATCTCCTTCTATGTTGGAAA+TGG - chr4_2:56762261-56762280 Msa0609420:intron 35.0%
!!! ATCCTTTTTAGGTGGTTTCA+AGG - chr4_2:56762507-56762526 Msa0609420:CDS 35.0%
!!! TCCTTTTTAGGTGGTTTCAA+GGG - chr4_2:56762508-56762527 Msa0609420:CDS 35.0%
ACAACAATCATGCATCAAAG+AGG + chr4_2:56762850-56762869 None:intergenic 35.0%
CATAGAACAGTCCAAACAAA+AGG + chr4_2:56762908-56762927 None:intergenic 35.0%
!! TGCTTTTTGTGACTCTATCT+AGG - chr4_2:56762926-56762945 Msa0609420:five_prime_UTR 35.0%
GTGCAAATCCTGATGAAATT+AGG - chr4_2:56763030-56763049 Msa0609420:five_prime_UTR 35.0%
ATTCTTCAGCTATGCTCATG+TGG + chr4_2:56761357-56761376 None:intergenic 40.0%
CATGAGCATAGCTGAAGAAT+TGG - chr4_2:56761357-56761376 Msa0609420:CDS 40.0%
ACAACAGCACAAAAAGTCCA+AGG - chr4_2:56761574-56761593 Msa0609420:intron 40.0%
! TATTGGTAGCTTCAGTGATG+TGG + chr4_2:56761634-56761653 None:intergenic 40.0%
GGTGATTATGGTTTCAGCTT+CGG - chr4_2:56761739-56761758 Msa0609420:intron 40.0%
AAAGAGGACATCTTGATAGG+TGG + chr4_2:56761900-56761919 None:intergenic 40.0%
CAGAAAGAGGACATCTTGAT+AGG + chr4_2:56761903-56761922 None:intergenic 40.0%
TCAAGATGTCCTCTTTCTGA+AGG - chr4_2:56761904-56761923 Msa0609420:intron 40.0%
! TACAGTTCGGTTTTCTGTGA+AGG - chr4_2:56762189-56762208 Msa0609420:intron 40.0%
!! CTGTGAAGGTAGTTCTGATT+CGG - chr4_2:56762203-56762222 Msa0609420:intron 40.0%
TTGCATGTGCTGCAAATTAG+AGG + chr4_2:56762289-56762308 None:intergenic 40.0%
AAGCATGCTATCACTAAGAC+TGG - chr4_2:56762395-56762414 Msa0609420:intron 40.0%
! TGCTATCACTAAGACTGGTT+TGG - chr4_2:56762400-56762419 Msa0609420:intron 40.0%
TCCCTTGAAACCACCTAAAA+AGG + chr4_2:56762512-56762531 None:intergenic 40.0%
ATAAACACAGCCCTCAAAGT+GGG + chr4_2:56762674-56762693 None:intergenic 40.0%
TATAAACACAGCCCTCAAAG+TGG + chr4_2:56762675-56762694 None:intergenic 40.0%
!! CATGGCATTGATTTCCAACT+TGG + chr4_2:56762961-56762980 None:intergenic 40.0%
CATCAACAAAAAGGTAGGCA+TGG + chr4_2:56762979-56762998 None:intergenic 40.0%
CCACTCATCAACAAAAAGGT+AGG + chr4_2:56762984-56763003 None:intergenic 40.0%
!! CCTACCTTTTTGTTGATGAG+TGG - chr4_2:56762981-56763000 Msa0609420:five_prime_UTR 40.0%
!! ACCTTTTTGTTGATGAGTGG+AGG - chr4_2:56762984-56763003 Msa0609420:five_prime_UTR 40.0%
TCCTCCACTCATCAACAAAA+AGG + chr4_2:56762988-56763007 None:intergenic 40.0%
! GTGATTTGGAGGAATGAGTT+TGG + chr4_2:56763079-56763098 None:intergenic 40.0%
ATTCCTCCAAATCACTCTGA+TGG - chr4_2:56763084-56763103 Msa0609420:five_prime_UTR 40.0%
CATCATCCATCAGAGTGATT+TGG + chr4_2:56763093-56763112 None:intergenic 40.0%
ATTCTTCAGCTATGCTCATG+TGG + chr4_2:56761357-56761376 None:intergenic 40.0%
CATGAGCATAGCTGAAGAAT+TGG - chr4_2:56761357-56761376 Msa0609420:CDS 40.0%
ACAACAGCACAAAAAGTCCA+AGG - chr4_2:56761574-56761593 Msa0609420:intron 40.0%
! TATTGGTAGCTTCAGTGATG+TGG + chr4_2:56761634-56761653 None:intergenic 40.0%
GGTGATTATGGTTTCAGCTT+CGG - chr4_2:56761739-56761758 Msa0609420:intron 40.0%
AAAGAGGACATCTTGATAGG+TGG + chr4_2:56761900-56761919 None:intergenic 40.0%
CAGAAAGAGGACATCTTGAT+AGG + chr4_2:56761903-56761922 None:intergenic 40.0%
TCAAGATGTCCTCTTTCTGA+AGG - chr4_2:56761904-56761923 Msa0609420:intron 40.0%
! TACAGTTCGGTTTTCTGTGA+AGG - chr4_2:56762189-56762208 Msa0609420:intron 40.0%
!! CTGTGAAGGTAGTTCTGATT+CGG - chr4_2:56762203-56762222 Msa0609420:intron 40.0%
TTGCATGTGCTGCAAATTAG+AGG + chr4_2:56762289-56762308 None:intergenic 40.0%
AAGCATGCTATCACTAAGAC+TGG - chr4_2:56762395-56762414 Msa0609420:intron 40.0%
! TGCTATCACTAAGACTGGTT+TGG - chr4_2:56762400-56762419 Msa0609420:intron 40.0%
TCCCTTGAAACCACCTAAAA+AGG + chr4_2:56762512-56762531 None:intergenic 40.0%
ATAAACACAGCCCTCAAAGT+GGG + chr4_2:56762674-56762693 None:intergenic 40.0%
TATAAACACAGCCCTCAAAG+TGG + chr4_2:56762675-56762694 None:intergenic 40.0%
!! CATGGCATTGATTTCCAACT+TGG + chr4_2:56762961-56762980 None:intergenic 40.0%
CATCAACAAAAAGGTAGGCA+TGG + chr4_2:56762979-56762998 None:intergenic 40.0%
CCACTCATCAACAAAAAGGT+AGG + chr4_2:56762984-56763003 None:intergenic 40.0%
!! CCTACCTTTTTGTTGATGAG+TGG - chr4_2:56762981-56763000 Msa0609420:five_prime_UTR 40.0%
!! ACCTTTTTGTTGATGAGTGG+AGG - chr4_2:56762984-56763003 Msa0609420:five_prime_UTR 40.0%
TCCTCCACTCATCAACAAAA+AGG + chr4_2:56762988-56763007 None:intergenic 40.0%
! GTGATTTGGAGGAATGAGTT+TGG + chr4_2:56763079-56763098 None:intergenic 40.0%
ATTCCTCCAAATCACTCTGA+TGG - chr4_2:56763084-56763103 Msa0609420:five_prime_UTR 40.0%
CATCATCCATCAGAGTGATT+TGG + chr4_2:56763093-56763112 None:intergenic 40.0%
! AGATGTCCTCTTTCTGAAGG+TGG - chr4_2:56761907-56761926 Msa0609420:intron 45.0%
TTTATGGTCTATGGAGGGGA+AGG - chr4_2:56761954-56761973 Msa0609420:intron 45.0%
!! AGGTAGTTCTGATTCGGTTC+AGG - chr4_2:56762209-56762228 Msa0609420:intron 45.0%
GGCTCCATTTCCAACATAGA+AGG + chr4_2:56762268-56762287 None:intergenic 45.0%
TGATTCCAAACCCCACTTTG+AGG - chr4_2:56762341-56762360 Msa0609420:intron 45.0%
AGTTCCTGTGACCTCAAAGT+GGG + chr4_2:56762355-56762374 None:intergenic 45.0%
GTTGAGTGGAGAGACTCTTA+TGG - chr4_2:56762620-56762639 Msa0609420:intron 45.0%
GATTCCAAACCCCACTTTGA+GGG - chr4_2:56762342-56762361 Msa0609420:intron 45.0%
TAAACACAGCCCTCAAAGTG+GGG + chr4_2:56762673-56762692 None:intergenic 45.0%
!! GGCATTGATTTCCAACTTGG+AGG + chr4_2:56762958-56762977 None:intergenic 45.0%
AATCCAGTGGAGAAAGCTGT+TGG - chr4_2:56763008-56763027 Msa0609420:five_prime_UTR 45.0%
! CATCCATCAGAGTGATTTGG+AGG + chr4_2:56763090-56763109 None:intergenic 45.0%
! AGATGTCCTCTTTCTGAAGG+TGG - chr4_2:56761907-56761926 Msa0609420:intron 45.0%
TTTATGGTCTATGGAGGGGA+AGG - chr4_2:56761954-56761973 Msa0609420:intron 45.0%
!! AGGTAGTTCTGATTCGGTTC+AGG - chr4_2:56762209-56762228 Msa0609420:intron 45.0%
GGCTCCATTTCCAACATAGA+AGG + chr4_2:56762268-56762287 None:intergenic 45.0%
TGATTCCAAACCCCACTTTG+AGG - chr4_2:56762341-56762360 Msa0609420:intron 45.0%
AGTTCCTGTGACCTCAAAGT+GGG + chr4_2:56762355-56762374 None:intergenic 45.0%
GTTGAGTGGAGAGACTCTTA+TGG - chr4_2:56762620-56762639 Msa0609420:intron 45.0%
GATTCCAAACCCCACTTTGA+GGG - chr4_2:56762342-56762361 Msa0609420:intron 45.0%
TAAACACAGCCCTCAAAGTG+GGG + chr4_2:56762673-56762692 None:intergenic 45.0%
!! GGCATTGATTTCCAACTTGG+AGG + chr4_2:56762958-56762977 None:intergenic 45.0%
AATCCAGTGGAGAAAGCTGT+TGG - chr4_2:56763008-56763027 Msa0609420:five_prime_UTR 45.0%
! CATCCATCAGAGTGATTTGG+AGG + chr4_2:56763090-56763109 None:intergenic 45.0%
!!! TAAAAGATATTATTTTAATT+AGG + chr4_2:56762482-56762501 None:intergenic 5.0%
!!! TAAAAGATATTATTTTAATT+AGG + chr4_2:56762482-56762501 None:intergenic 5.0%
TGGCCCCAGCTAGATAAGAT+TGG - chr4_2:56761388-56761407 Msa0609420:CDS 50.0%
CCACATCCACCTTCAGAAAG+AGG + chr4_2:56761916-56761935 None:intergenic 50.0%
! CCTCTTTCTGAAGGTGGATG+TGG - chr4_2:56761913-56761932 Msa0609420:intron 50.0%
GGTGGATGTGGACGAAGTTA+AGG - chr4_2:56761925-56761944 Msa0609420:intron 50.0%
!! TGTCGGTGTTGCACGGATAA+TGG + chr4_2:56762028-56762047 None:intergenic 50.0%
TGTGACCTCAAAGTGGGGTT+TGG + chr4_2:56762349-56762368 None:intergenic 50.0%
!! AAACCCCACTTTGAGGTCAC+AGG - chr4_2:56762348-56762367 Msa0609420:intron 50.0%
GTTCCTGTGACCTCAAAGTG+GGG + chr4_2:56762354-56762373 None:intergenic 50.0%
CAGTTCCTGTGACCTCAAAG+TGG + chr4_2:56762356-56762375 None:intergenic 50.0%
GGATTCCAAACCCCACTTTG+AGG - chr4_2:56762660-56762679 Msa0609420:intron 50.0%
CTAGGAAGTAGCCTCCAAGT+TGG - chr4_2:56762944-56762963 Msa0609420:five_prime_UTR 50.0%
GATGAGTGGAGGAAATCCAG+TGG - chr4_2:56762995-56763014 Msa0609420:five_prime_UTR 50.0%
TGGCCCCAGCTAGATAAGAT+TGG - chr4_2:56761388-56761407 Msa0609420:CDS 50.0%
CCACATCCACCTTCAGAAAG+AGG + chr4_2:56761916-56761935 None:intergenic 50.0%
! CCTCTTTCTGAAGGTGGATG+TGG - chr4_2:56761913-56761932 Msa0609420:intron 50.0%
GGTGGATGTGGACGAAGTTA+AGG - chr4_2:56761925-56761944 Msa0609420:intron 50.0%
!! TGTCGGTGTTGCACGGATAA+TGG + chr4_2:56762028-56762047 None:intergenic 50.0%
TGTGACCTCAAAGTGGGGTT+TGG + chr4_2:56762349-56762368 None:intergenic 50.0%
!! AAACCCCACTTTGAGGTCAC+AGG - chr4_2:56762348-56762367 Msa0609420:intron 50.0%
GTTCCTGTGACCTCAAAGTG+GGG + chr4_2:56762354-56762373 None:intergenic 50.0%
CAGTTCCTGTGACCTCAAAG+TGG + chr4_2:56762356-56762375 None:intergenic 50.0%
GGATTCCAAACCCCACTTTG+AGG - chr4_2:56762660-56762679 Msa0609420:intron 50.0%
CTAGGAAGTAGCCTCCAAGT+TGG - chr4_2:56762944-56762963 Msa0609420:five_prime_UTR 50.0%
GATGAGTGGAGGAAATCCAG+TGG - chr4_2:56762995-56763014 Msa0609420:five_prime_UTR 50.0%
ACAGCCCTCAAAGTGGGGTT+TGG + chr4_2:56762668-56762687 None:intergenic 55.0%
GCACCAACAGCTTTCTCCAC+TGG + chr4_2:56763014-56763033 None:intergenic 55.0%
ACAGCCCTCAAAGTGGGGTT+TGG + chr4_2:56762668-56762687 None:intergenic 55.0%
GCACCAACAGCTTTCTCCAC+TGG + chr4_2:56763014-56763033 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56761235 56763215 56761235 ID=Msa0609420;Name=Msa0609420
chr4_2 mRNA 56761235 56763215 56761235 ID=Msa0609420-mRNA-1;Parent=Msa0609420;Name=Msa0609420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=328|1|1|1|1|1|3|112|126
chr4_2 exon 56761235 56761502 56761235 ID=Msa0609420-mRNA-1:exon:14694;Parent=Msa0609420-mRNA-1
chr4_2 exon 56762504 56762626 56762504 ID=Msa0609420-mRNA-1:exon:14693;Parent=Msa0609420-mRNA-1
chr4_2 exon 56762786 56763215 56762786 ID=Msa0609420-mRNA-1:exon:14692;Parent=Msa0609420-mRNA-1
chr4_2 five_prime_UTR 56762888 56763215 56762888 ID=Msa0609420-mRNA-1:five_prime_utr;Parent=Msa0609420-mRNA-1
chr4_2 CDS 56762786 56762887 56762786 ID=Msa0609420-mRNA-1:cds;Parent=Msa0609420-mRNA-1
chr4_2 CDS 56762504 56762626 56762504 ID=Msa0609420-mRNA-1:cds;Parent=Msa0609420-mRNA-1
chr4_2 CDS 56761347 56761502 56761347 ID=Msa0609420-mRNA-1:cds;Parent=Msa0609420-mRNA-1
chr4_2 three_prime_UTR 56761235 56761346 56761235 ID=Msa0609420-mRNA-1:three_prime_utr;Parent=Msa0609420-mRNA-1
Gene Sequence

>Msa0609420

ATGGGTAGTCAACAACAGCACAAAAAGTCCAAGGTTGTGAAAATTGACTCAAGAAAATCATGGGAACACCACATCACTGAAGCTACCAATAAAGGTTGCCTTGTTATGGTTCATTTTTCTGCTTATTGGTGCGTTCCTTCTATTGCTATGAACCCTTTCTTTGAAGAATTAGCATCCACCTATCAAGATGTCCTCTTTCTGAAGGTGGATGTGGACGAAGTTAAGGAAGTAGCCTCCAAGTTGGAAATCAATGCCATGCCTACCTTTTTGTTGATGAGTGGAGGAAATCCAGTGGAGAAAGCTGTTGGTGCAAATCCTGATGAAATTAGGAAAAGGATGGATCATTTTATTAACCAAACTCATTCCTCCAAATCACTCTGA

Protein sequence

>Msa0609420

MGSQQQHKKSKVVKIDSRKSWEHHITEATNKGCLVMVHFSAYWCVPSIAMNPFFEELASTYQDVLFLKVDVDEVKEVASKLEINAMPTFLLMSGGNPVEKAVGANPDEIRKRMDHFINQTHSSKSL*