AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0155030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155030 MtrunA17_Chr1g0169121 85.466 461 10 4 28 469 26 448 0.0 792
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155030 AT1G04620.1 72.668 461 69 4 28 469 40 462 0.0 692

Find 119 sgRNAs with CRISPR-Local

Find 501 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGTTTCCAACAAATTT+TGG 0.060069 1_4:-19970471 None:intergenic
ATTTATACGTAAACCGGATA+TGG 0.201591 1_4:+19970686 Msa0155030:CDS
TGTGGAGCACCACTTGAATT+TGG 0.214139 1_4:+19968036 Msa0155030:CDS
TCATAATGGAGAACTGTTTC+AGG 0.214817 1_4:-19968238 None:intergenic
ATGCTGATTCCGGAATATTT+TGG 0.236876 1_4:-19969697 None:intergenic
GTTTAACAAAATGTATATAA+TGG 0.269221 1_4:-19971154 None:intergenic
GGACTTGGTCGTTGGATATA+TGG 0.270258 1_4:+19969669 Msa0155030:intron
GCTGATGATAAAGCTAAATT+TGG 0.271815 1_4:+19970078 Msa0155030:CDS
CTGTCTCCCAGCAAATGATT+TGG 0.288560 1_4:+19969294 Msa0155030:CDS
CAACAAGTGCAAGGGTATTA+AGG 0.290200 1_4:-19966720 None:intergenic
TTAGCAGCCATCACTTCTTC+TGG 0.292447 1_4:-19966670 None:intergenic
TAAGAATGCTTGTGCTTTCT+TGG 0.303722 1_4:+19963854 Msa0155030:CDS
GCAGGTTCACTTAAAGCATT+TGG 0.332228 1_4:+19969161 Msa0155030:intron
CTAATGGATTCATATGCTAA+TGG 0.352219 1_4:+19970899 Msa0155030:three_prime_UTR
CAAAACAGGACTGGAGAAAA+AGG 0.352288 1_4:+19963742 Msa0155030:CDS
GCAATTGAAATGCTTAAATC+AGG 0.358345 1_4:+19966329 Msa0155030:CDS
AGTCAGAATATACCTTCAAC+AGG 0.373888 1_4:-19965184 None:intergenic
ACCTTTCCTTTCCCCATATC+CGG 0.379150 1_4:-19970699 None:intergenic
CAGCCTGCCCCAAAATTTGT+TGG 0.382744 1_4:+19970462 Msa0155030:CDS
CCCTAAGTAGGTCTCATCTA+AGG 0.390531 1_4:-19965125 None:intergenic
GTCAAAACTTTGTTTCTAGC+TGG 0.397085 1_4:+19971018 Msa0155030:three_prime_UTR
CAACCTTGCTAAAACAGGTC+TGG 0.404047 1_4:-19966558 None:intergenic
AGAATCCTCCATTTCAAAAC+AGG 0.404533 1_4:+19963728 Msa0155030:intron
TTTCTGTGGTGTAGGTTGCC+AGG 0.407229 1_4:+19967899 Msa0155030:intron
ACATCAACCAAATCATTTGC+TGG 0.410174 1_4:-19969301 None:intergenic
GGAACTATTTATACGTAAAC+CGG 0.411362 1_4:+19970680 Msa0155030:CDS
AAATTGGAACCTGTTGTTCA+TGG 0.417037 1_4:+19965082 Msa0155030:CDS
TAGGTTCCACCTGGTGGGAT+AGG 0.417092 1_4:-19963771 None:intergenic
AACTATCAGTAATAATCTTT+AGG 0.417887 1_4:+19971059 Msa0155030:three_prime_UTR
TTTATACGTAAACCGGATAT+GGG 0.418788 1_4:+19970687 Msa0155030:CDS
TAAATTGTTGCAGGGCTGAT+AGG 0.421045 1_4:+19970793 Msa0155030:intron
CTTCCTCTACCATGAACAAC+AGG 0.421097 1_4:-19965091 None:intergenic
AAAGTTCATACAAACTATAT+AGG 0.422544 1_4:-19971082 None:intergenic
CGTGCAAATTCAATGCCCTT+TGG 0.430479 1_4:-19970631 None:intergenic
ATGTTGTGTCATGCTGATTC+CGG 0.431412 1_4:-19969707 None:intergenic
AAGAATGCTTGTGCTTTCTT+GGG 0.435235 1_4:+19963855 Msa0155030:CDS
GACTTGGTCGTTGGATATAT+GGG 0.435737 1_4:+19969670 Msa0155030:CDS
TTATTGCTCCATCTTGCTAC+AGG 0.435998 1_4:+19969323 Msa0155030:CDS
TTTGCTGGGAGACAGAAATA+AGG 0.436430 1_4:-19969286 None:intergenic
CGCTTGATTATCATACCATT+CGG 0.443793 1_4:+19970659 Msa0155030:CDS
ATGGGCGTGCCAAAATATTC+CGG 0.444128 1_4:+19969688 Msa0155030:CDS
CCTTAGATGAGACCTACTTA+GGG 0.447504 1_4:+19965125 Msa0155030:CDS
CAATGGAACCAGGGAAGGAC+TGG 0.454699 1_4:+19968186 Msa0155030:CDS
TGAGTTTAGAGTCACGAGTT+TGG 0.455025 1_4:+19969362 Msa0155030:CDS
GAAGCCAACCTTGCTAAAAC+AGG 0.457249 1_4:-19966563 None:intergenic
GCTTGTGCTTTCTTGGGAGA+TGG 0.464642 1_4:+19963861 Msa0155030:CDS
AGTGCAAGGGTATTAAGGTT+AGG 0.466556 1_4:-19966715 None:intergenic
ATTTGTCATGGAGACTGTTA+AGG 0.468608 1_4:+19970056 Msa0155030:CDS
GGCACACCTATGCCACTGAT+TGG 0.470899 1_4:-19970932 None:intergenic
CGACTGCATTGATCTTTAGC+AGG 0.474250 1_4:-19963795 None:intergenic
AGCACGAATGGATAGAGAAA+GGG 0.479689 1_4:-19963433 None:intergenic
CTGGGAGCAAATCTGTCGTC+AGG 0.485421 1_4:-19966539 None:intergenic
AAACTTATCCAGTCCTTCCC+TGG 0.487043 1_4:-19968194 None:intergenic
TATGTTCAGGTTGGTCCAAA+GGG 0.488373 1_4:+19970616 Msa0155030:intron
ACCTTAGATGAGACCTACTT+AGG 0.488804 1_4:+19965124 Msa0155030:CDS
AACCTTGCTAAAACAGGTCT+GGG 0.491902 1_4:-19966557 None:intergenic
TAACTTACTGAATTAACTGT+TGG 0.494896 1_4:-19969950 None:intergenic
TCTCAGAGAAGTGATTCTAA+TGG 0.504819 1_4:+19970883 Msa0155030:exon
GCAGGGTAGGTTCCACCTGG+TGG 0.508024 1_4:-19963777 None:intergenic
CTATGTTCAGGTTGGTCCAA+AGG 0.510081 1_4:+19970615 Msa0155030:intron
GAACCTGTTGTTCATGGTAG+AGG 0.511132 1_4:+19965088 Msa0155030:CDS
TTCATAGGAGCTCAATGGAC+TGG 0.514762 1_4:+19966290 Msa0155030:intron
GCATTGATCTTTAGCAGGGT+AGG 0.515192 1_4:-19963790 None:intergenic
ACAAATAACCTGTAGCAAGA+TGG 0.517182 1_4:-19969331 None:intergenic
CGGAAACTTAACCCTGTTGA+AGG 0.518911 1_4:+19965172 Msa0155030:CDS
CATAATGGAGAACTGTTTCA+GGG 0.520042 1_4:-19968237 None:intergenic
TTTAAGCATTTCAATTGCAA+TGG 0.533394 1_4:-19966324 None:intergenic
TTAACAGTCTCCATGACAAA+TGG 0.534122 1_4:-19970054 None:intergenic
CATCAACCAAATCATTTGCT+GGG 0.539146 1_4:-19969300 None:intergenic
ATGAGGAACTTCTGTATGCT+CGG 0.539703 1_4:+19965152 Msa0155030:CDS
ATCCACAATATATTACTGTC+AGG 0.540157 1_4:+19969728 Msa0155030:CDS
CGACAGTGGACAATGGAACC+AGG 0.543521 1_4:+19968176 Msa0155030:intron
TTAAGGTTAGGAGATAATGT+TGG 0.544648 1_4:-19966703 None:intergenic
TAATACCCTTGCACTTGTTG+AGG 0.544891 1_4:+19966723 Msa0155030:CDS
CATGCTCCAATCAGTGGCAT+AGG 0.547046 1_4:+19970926 Msa0155030:three_prime_UTR
AAGCACGAATGGATAGAGAA+AGG 0.547651 1_4:-19963434 None:intergenic
TTCATATGCTAAGAAAATTG+TGG 0.556041 1_4:+19970824 Msa0155030:CDS
GAAGAAGTGATGGCTGCTAA+AGG 0.556856 1_4:+19966673 Msa0155030:CDS
CCTCCATTTCAAAACAGGAC+TGG 0.559011 1_4:+19963733 Msa0155030:CDS
TACCTGACAGTAATATATTG+TGG 0.560089 1_4:-19969730 None:intergenic
AGGTCAAAGCCTATCCCACC+AGG 0.565383 1_4:+19963762 Msa0155030:CDS
GTTAAACTTCAACATTGTAG+TGG 0.565587 1_4:+19971170 Msa0155030:three_prime_UTR
CACAAACCTCAACAAGTGCA+AGG 0.577511 1_4:-19966729 None:intergenic
CGTAAACCGGATATGGGGAA+AGG 0.578319 1_4:+19970693 Msa0155030:CDS
AATTGCAGCATTAAGATCTG+TGG 0.579563 1_4:+19968018 Msa0155030:CDS
TGAAATGCTTAAATCAGGCA+TGG 0.579843 1_4:+19966334 Msa0155030:CDS
TCTTCTTCTTCTGCATCACA+AGG 0.582785 1_4:+19963456 Msa0155030:CDS
AGAAGAGGCCACATCATCAT+CGG 0.588553 1_4:+19963351 Msa0155030:five_prime_UTR
GCACGAATGGATAGAGAAAG+GGG 0.593257 1_4:-19963432 None:intergenic
TACGTATAAATAGTTCCGAA+TGG 0.593464 1_4:-19970674 None:intergenic
AAGCTGTCATTTGTGTACAA+AGG 0.596616 1_4:+19966360 Msa0155030:CDS
TTAGCAGGGTAGGTTCCACC+TGG 0.597375 1_4:-19963780 None:intergenic
GGATTACATGCTCCAATCAG+TGG 0.599200 1_4:+19970920 Msa0155030:three_prime_UTR
CCTTATTCGACAGTGGACAA+TGG 0.600320 1_4:+19968169 Msa0155030:intron
CAGGACACCAGAAGAAGTGA+TGG 0.602250 1_4:+19966663 Msa0155030:intron
GACTGCATTGATCTTTAGCA+GGG 0.602897 1_4:-19963794 None:intergenic
GACCTACTTAGGGGTCTATG+AGG 0.605671 1_4:+19965135 Msa0155030:CDS
GGATAGGCGACCATTTGTCA+TGG 0.606587 1_4:+19970044 Msa0155030:CDS
CAGGGTAGGTTCCACCTGGT+GGG 0.606958 1_4:-19963776 None:intergenic
AGAAGAAGAAGAAGCACGAA+TGG 0.607102 1_4:-19963445 None:intergenic
TTTGGACGGTCGTATTGAAG+AGG 0.610876 1_4:+19969179 Msa0155030:CDS
CTGCTAAAGATCAATGCAGT+CGG 0.613645 1_4:+19963796 Msa0155030:CDS
GTGGACAATGGAACCAGGGA+AGG 0.613783 1_4:+19968181 Msa0155030:intron
ACCGGATATGGGGAAAGGAA+AGG 0.620649 1_4:+19970698 Msa0155030:CDS
GTTCACTTAAAGCATTTGGA+CGG 0.625612 1_4:+19969165 Msa0155030:CDS
TTATACGTAAACCGGATATG+GGG 0.631884 1_4:+19970688 Msa0155030:CDS
AGCGAACACCGATGATGATG+TGG 0.634417 1_4:-19963359 None:intergenic
TTACAATGTTGTGAATTGTG+TGG 0.635158 1_4:+19963325 Msa0155030:five_prime_UTR
AGAGCTTATCCAAATTCAAG+TGG 0.635776 1_4:-19968045 None:intergenic
AAAGATCAATGCAGTCGGTG+TGG 0.644116 1_4:+19963801 Msa0155030:CDS
TTCCTCATAGACCCCTAAGT+AGG 0.644398 1_4:-19965137 None:intergenic
ACAAACCTCAACAAGTGCAA+GGG 0.653375 1_4:-19966728 None:intergenic
GACAGTGGACAATGGAACCA+GGG 0.676637 1_4:+19968177 Msa0155030:intron
GTCAGAATATACCTTCAACA+GGG 0.677337 1_4:-19965183 None:intergenic
ATAATGGAGAACTGTTTCAG+GGG 0.681913 1_4:-19968236 None:intergenic
TGAATTGTGTGGAACAGAAG+AGG 0.700134 1_4:+19963336 Msa0155030:five_prime_UTR
CTTAGATGAGACCTACTTAG+GGG 0.700742 1_4:+19965126 Msa0155030:CDS
TCAAAGCCTATCCCACCAGG+TGG 0.703549 1_4:+19963765 Msa0155030:CDS
TGAAACGACAGGAATGAACG+TGG 0.713648 1_4:+19969884 Msa0155030:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATCACATTATTAT+CGG - chr1_4:19963558-19963577 None:intergenic 10.0%
!!! ATTATTTTAAATAAATCAGT+TGG - chr1_4:19968925-19968944 None:intergenic 10.0%
!!! AACTGATTTATTTAAAATAA+TGG + chr1_4:19968924-19968943 Msa0155030:intron 10.0%
!!! CATTTTAAATTATTCTTTCT+TGG + chr1_4:19965323-19965342 Msa0155030:intron 15.0%
!! ATAAATTTATCTATTCATTC+AGG + chr1_4:19966840-19966859 Msa0155030:intron 15.0%
!! GTAATATATTATGTTATAAC+TGG - chr1_4:19967678-19967697 None:intergenic 15.0%
!!! AGTTTATTTGAGTTTTTAAT+TGG + chr1_4:19968324-19968343 Msa0155030:intron 15.0%
!!! TATTTTCTCAATAGAAAAAA+GGG + chr1_4:19968661-19968680 Msa0155030:intron 15.0%
!!! TTTCATTTTGATTTCTTAAA+TGG + chr1_4:19969385-19969404 Msa0155030:CDS 15.0%
!!! TTTTATAATGAAAAAACTGA+TGG - chr1_4:19969615-19969634 None:intergenic 15.0%
!!! ATATTTTCTTTTTGATGAAA+TGG + chr1_4:19970297-19970316 Msa0155030:intron 15.0%
!! TACATTTATCAAATTATCAA+TGG - chr1_4:19970540-19970559 None:intergenic 15.0%
!! GTTTAACAAAATGTATATAA+TGG - chr1_4:19971157-19971176 None:intergenic 15.0%
!! TTCAATGTAATTATATGTGT+CGG + chr1_4:19963583-19963602 Msa0155030:intron 20.0%
!! AAATCATTATGTGATATGAA+TGG + chr1_4:19964008-19964027 Msa0155030:intron 20.0%
!! TGCATATTGAAATTTCAATT+TGG - chr1_4:19964853-19964872 None:intergenic 20.0%
!!! ATTATTCTTTCTTGGTTTTT+TGG + chr1_4:19965331-19965350 Msa0155030:intron 20.0%
!!! TTTAAGAAGCATTTTTTCAA+TGG + chr1_4:19965379-19965398 Msa0155030:intron 20.0%
!!! AATTAGATAATGGAATAGTT+AGG + chr1_4:19965443-19965462 Msa0155030:intron 20.0%
!! GATCTTAATTTCTATGATTT+AGG - chr1_4:19965637-19965656 None:intergenic 20.0%
!! ATATCAATGAAATATTTCAG+TGG - chr1_4:19965659-19965678 None:intergenic 20.0%
!!! TCCTTTACAATAATTTTATG+AGG + chr1_4:19965810-19965829 Msa0155030:intron 20.0%
!! TCCTCATAAAATTATTGTAA+AGG - chr1_4:19965814-19965833 None:intergenic 20.0%
!! AGCATATGAAAAAAACTTAA+AGG - chr1_4:19965998-19966017 None:intergenic 20.0%
!!! GTAAAATTTGTTCTTTTCAT+AGG + chr1_4:19966275-19966294 Msa0155030:intron 20.0%
!!! ATTTATCTACATGTTTTGAT+TGG + chr1_4:19966390-19966409 Msa0155030:intron 20.0%
!! AATGAAAAACATTAGAAACA+TGG - chr1_4:19966419-19966438 None:intergenic 20.0%
!! TTAAAATACTTCATTTCTTC+AGG + chr1_4:19966644-19966663 Msa0155030:intron 20.0%
!!! ATTCTTTGTCATGTTTTTTT+AGG - chr1_4:19967305-19967324 None:intergenic 20.0%
!! ATTAAATGTAAGTGTAAAAC+TGG + chr1_4:19967754-19967773 Msa0155030:intron 20.0%
!! AGTCATAGAATGAATATAAA+AGG - chr1_4:19967833-19967852 None:intergenic 20.0%
!! TCAAATAAACTAATTCAAAC+AGG - chr1_4:19968315-19968334 None:intergenic 20.0%
!! AATAAGTAGAAAACAACTTA+TGG - chr1_4:19968405-19968424 None:intergenic 20.0%
!!! GTATTTTCTCAATAGAAAAA+AGG + chr1_4:19968660-19968679 Msa0155030:intron 20.0%
!!! TTTTAAATTTTAACTTGAGC+AGG + chr1_4:19969261-19969280 Msa0155030:intron 20.0%
!! AAAACTATCACTTAATTAGA+TGG + chr1_4:19969633-19969652 Msa0155030:intron 20.0%
!!! GATATTTGATTATTTTTCCT+TGG + chr1_4:19970407-19970426 Msa0155030:intron 20.0%
!! AATTTAGTAAAAATGCAATC+AGG - chr1_4:19970491-19970510 None:intergenic 20.0%
!!! GATTGCATTTTTACTAAATT+TGG + chr1_4:19970491-19970510 Msa0155030:CDS 20.0%
!! TATGCAAGATGATTTATTTA+TGG + chr1_4:19970721-19970740 Msa0155030:intron 20.0%
!! AACTATCAGTAATAATCTTT+AGG + chr1_4:19971059-19971078 Msa0155030:three_prime_UTR 20.0%
!! AAAGTTCATACAAACTATAT+AGG - chr1_4:19971085-19971104 None:intergenic 20.0%
! CTCATCACTCATAAAATAAA+GGG - chr1_4:19963917-19963936 None:intergenic 25.0%
! ACTCATCACTCATAAAATAA+AGG - chr1_4:19963918-19963937 None:intergenic 25.0%
! ATTTCACAAAGTTACTAACA+AGG + chr1_4:19964604-19964623 Msa0155030:intron 25.0%
!! ACTTATTGATTATTTCCACT+AGG - chr1_4:19964691-19964710 None:intergenic 25.0%
! TTTGTCGCAAAAAGTAAATT+TGG - chr1_4:19964748-19964767 None:intergenic 25.0%
!!! TACTTTTTGCGACAAAAAAA+TGG + chr1_4:19964752-19964771 Msa0155030:intron 25.0%
! CTTATAAGAATATTAAGCGA+TGG - chr1_4:19964955-19964974 None:intergenic 25.0%
!! ATAAAGAGTCCAATCAATTT+TGG - chr1_4:19965043-19965062 None:intergenic 25.0%
!! TCTTTTTCTGTTTCAGAAAT+TGG + chr1_4:19965066-19965085 Msa0155030:intron 25.0%
! TAGTTTCATACTCATTAGAA+CGG - chr1_4:19965237-19965256 None:intergenic 25.0%
! GCTTCTTAAAATGTAAAGAA+TGG - chr1_4:19965369-19965388 None:intergenic 25.0%
! ATTATCTAATTACCACAAAG+GGG - chr1_4:19965434-19965453 None:intergenic 25.0%
! CATTATCTAATTACCACAAA+GGG - chr1_4:19965435-19965454 None:intergenic 25.0%
! CTTAATTTCTATGATTTAGG+AGG - chr1_4:19965634-19965653 None:intergenic 25.0%
! GGTTTCAAACTAAATACTAA+AGG - chr1_4:19965696-19965715 None:intergenic 25.0%
!! TCATGGATTACCTTATAAAT+TGG + chr1_4:19965740-19965759 Msa0155030:intron 25.0%
!!! GTAAAAGCATCCAATTTATA+AGG - chr1_4:19965753-19965772 None:intergenic 25.0%
!! ATAAATTGGATGCTTTTACA+TGG + chr1_4:19965754-19965773 Msa0155030:intron 25.0%
!!! GTTTTTTTCATATGCTATCA+TGG + chr1_4:19966002-19966021 Msa0155030:intron 25.0%
! AATAAGCTGCTAAAAACTTA+TGG + chr1_4:19966037-19966056 Msa0155030:intron 25.0%
! TAAAGCTTAACTACTAGAAT+AGG - chr1_4:19966112-19966131 None:intergenic 25.0%
! TCATCAATTTATGTCTATGA+TGG + chr1_4:19966211-19966230 Msa0155030:intron 25.0%
! CATCAATTTATGTCTATGAT+GGG + chr1_4:19966212-19966231 Msa0155030:intron 25.0%
! TTTAAGCATTTCAATTGCAA+TGG - chr1_4:19966327-19966346 None:intergenic 25.0%
! TTCATATTATCTCTAAGTGA+AGG - chr1_4:19967139-19967158 None:intergenic 25.0%
! CATTGAATCAGTAAAATCTA+CGG + chr1_4:19967230-19967249 Msa0155030:intron 25.0%
! ATTGAATCAGTAAAATCTAC+GGG + chr1_4:19967231-19967250 Msa0155030:intron 25.0%
!!! CAATGAACAACTTTTTTTGA+AGG - chr1_4:19967426-19967445 None:intergenic 25.0%
! TCTGAACCAAAAAATAAAAC+TGG + chr1_4:19967600-19967619 Msa0155030:intron 25.0%
!!! TCTCTTCCAGTTTTATTTTT+TGG - chr1_4:19967609-19967628 None:intergenic 25.0%
! GTGTAAAATAACTCAATCAT+TGG - chr1_4:19967649-19967668 None:intergenic 25.0%
!!! AATTACTGAATGAGCTTTTT+TGG - chr1_4:19967700-19967719 None:intergenic 25.0%
!! ACAATGTCTGAAATAGAAAA+TGG - chr1_4:19967801-19967820 None:intergenic 25.0%
!! TTTGAATTTTCATCATTGAC+AGG + chr1_4:19967854-19967873 Msa0155030:intron 25.0%
!!! TTGCAATGTTTTGATTATGT+TGG + chr1_4:19968124-19968143 Msa0155030:intron 25.0%
! AATCTTGCATAAACTCATAA+TGG - chr1_4:19968255-19968274 None:intergenic 25.0%
!! CTGAAAACTCATGTTTTATA+AGG + chr1_4:19968288-19968307 Msa0155030:intron 25.0%
!!! TAGCTTACGGAAATTTTTTA+TGG + chr1_4:19968443-19968462 Msa0155030:intron 25.0%
! ACTAAGTGCTTATAGTATAA+GGG - chr1_4:19968543-19968562 None:intergenic 25.0%
! AACTAAGTGCTTATAGTATA+AGG - chr1_4:19968544-19968563 None:intergenic 25.0%
! ATGTATTAAGAAGATGAGAT+GGG + chr1_4:19968638-19968657 Msa0155030:intron 25.0%
! TTAGTTAGAGTAGATTCAAT+TGG + chr1_4:19968715-19968734 Msa0155030:intron 25.0%
! TAGATTCAATTGGTTAAATG+TGG + chr1_4:19968725-19968744 Msa0155030:intron 25.0%
!! TAAAATAACATTTTGCGAAG+AGG + chr1_4:19968812-19968831 Msa0155030:intron 25.0%
! AATACATTGTAGTAGTACTA+AGG - chr1_4:19968864-19968883 None:intergenic 25.0%
! TTAGTACTACTACAATGTAT+TGG + chr1_4:19968863-19968882 Msa0155030:intron 25.0%
! TCAGGCAATGTAATATAAAT+TGG + chr1_4:19968886-19968905 Msa0155030:intron 25.0%
!!! TATTTTTGTTTGTTAATCCG+TGG - chr1_4:19969232-19969251 None:intergenic 25.0%
!! TCATTTTATGTTGCACTAAT+TGG + chr1_4:19969412-19969431 Msa0155030:CDS 25.0%
!!! ATTTTATTTCACCTGAACTT+AGG + chr1_4:19969525-19969544 Msa0155030:intron 25.0%
!! TCTCTTTTTGCACTTTATAT+GGG + chr1_4:19969776-19969795 Msa0155030:intron 25.0%
! AAATGTTTCTTGAAGGAATA+TGG + chr1_4:19969827-19969846 Msa0155030:intron 25.0%
! TAACTTACTGAATTAACTGT+TGG - chr1_4:19969953-19969972 None:intergenic 25.0%
! AAATTAGTGTTCACAAATAG+TGG - chr1_4:19970248-19970267 None:intergenic 25.0%
! AAGTAGAGAAAAGATACTTA+AGG - chr1_4:19970371-19970390 None:intergenic 25.0%
! CAATGGAAAAATTGTTTAAG+AGG - chr1_4:19970523-19970542 None:intergenic 25.0%
!!! AGTGGATTTTTTTTGTTTCT+TGG + chr1_4:19970583-19970602 Msa0155030:intron 25.0%
! TTGAAACATAAATTGTTGCA+GGG + chr1_4:19970785-19970804 Msa0155030:intron 25.0%
!! ACAATTTTCTTAGCATATGA+AGG - chr1_4:19970825-19970844 None:intergenic 25.0%
! TTCATATGCTAAGAAAATTG+TGG + chr1_4:19970824-19970843 Msa0155030:CDS 25.0%
!!! GTTTGTATGAACTTTTTTCA+TGG + chr1_4:19971090-19971109 Msa0155030:three_prime_UTR 25.0%
TTACAATGTTGTGAATTGTG+TGG + chr1_4:19963325-19963344 Msa0155030:five_prime_UTR 30.0%
ATGTAAAGAAAAAGAAGAGG+TGG - chr1_4:19963496-19963515 None:intergenic 30.0%
AGCATGTAAAGAAAAAGAAG+AGG - chr1_4:19963499-19963518 None:intergenic 30.0%
ATATGAGAAAAGAGAAGTGA+AGG - chr1_4:19963678-19963697 None:intergenic 30.0%
TGAGTAAAGTTTACATGACA+TGG - chr1_4:19963950-19963969 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr1_4:19964110-19964129 Msa0155030:intron 30.0%
! AACTTAATCCCTACATCTTT+TGG - chr1_4:19964161-19964180 None:intergenic 30.0%
!!! GTCTCTCGTTTTAATTTTTC+AGG - chr1_4:19964418-19964437 None:intergenic 30.0%
ACTTGAAACTGAAAGAGAAA+AGG + chr1_4:19964501-19964520 Msa0155030:intron 30.0%
AGCGAACATAAAACTTTAGT+CGG - chr1_4:19964583-19964602 None:intergenic 30.0%
! ACTAACAAGGTGATGATTTT+TGG + chr1_4:19964617-19964636 Msa0155030:intron 30.0%
! CTAACAAGGTGATGATTTTT+GGG + chr1_4:19964618-19964637 Msa0155030:intron 30.0%
GACTAATTGATGAGATAATG+TGG - chr1_4:19964664-19964683 None:intergenic 30.0%
TATTAAGCGATGGTTGAATT+AGG - chr1_4:19964945-19964964 None:intergenic 30.0%
!!! GTGTAAACTTTGTCATTTTC+TGG - chr1_4:19965017-19965036 None:intergenic 30.0%
TTACACAGACCAAAATTGAT+TGG + chr1_4:19965031-19965050 Msa0155030:intron 30.0%
AGTTTCATACTCATTAGAAC+GGG - chr1_4:19965236-19965255 None:intergenic 30.0%
!!! ATTCTTTCTTGGTTTTTTGG+TGG + chr1_4:19965334-19965353 Msa0155030:intron 30.0%
!!! CATTTTTTCAATGGTTTCTC+TGG + chr1_4:19965388-19965407 Msa0155030:intron 30.0%
CCATTATCTAATTACCACAA+AGG - chr1_4:19965436-19965455 None:intergenic 30.0%
CCTTTGTGGTAATTAGATAA+TGG + chr1_4:19965433-19965452 Msa0155030:intron 30.0%
TTGATCTCTTCCCTATTTAT+AGG - chr1_4:19965472-19965491 None:intergenic 30.0%
TTTCCTGGATTATAGAATAG+TGG - chr1_4:19965558-19965577 None:intergenic 30.0%
TGGTATTACTACAGAAAATG+CGG - chr1_4:19965586-19965605 None:intergenic 30.0%
! TTTGAAACCGATTTCAGTTT+CGG + chr1_4:19965707-19965726 Msa0155030:intron 30.0%
TGATAAACCGAAACTGAAAT+CGG - chr1_4:19965717-19965736 None:intergenic 30.0%
AGAGTGAGTGAAAAAAATGA+TGG + chr1_4:19965836-19965855 Msa0155030:intron 30.0%
GAGTGAGTGAAAAAAATGAT+GGG + chr1_4:19965837-19965856 Msa0155030:intron 30.0%
ATTAAGCTGTTTATCCAACA+AGG - chr1_4:19965897-19965916 None:intergenic 30.0%
GCAATTGAAATGCTTAAATC+AGG + chr1_4:19966329-19966348 Msa0155030:CDS 30.0%
ATCACTGTGATATACAAAGT+TGG - chr1_4:19966519-19966538 None:intergenic 30.0%
TTAAGGTTAGGAGATAATGT+TGG - chr1_4:19966706-19966725 None:intergenic 30.0%
GACACATTCTCTAACAAAAA+GGG - chr1_4:19966758-19966777 None:intergenic 30.0%
TGACACATTCTCTAACAAAA+AGG - chr1_4:19966759-19966778 None:intergenic 30.0%
TATAAGACGTTTCGTTCAAA+TGG + chr1_4:19966873-19966892 Msa0155030:intron 30.0%
GGTATAATGTGAAACATGAT+AGG + chr1_4:19966946-19966965 Msa0155030:intron 30.0%
TAAACAAGCTATTATCTCCT+AGG - chr1_4:19967199-19967218 None:intergenic 30.0%
!!! CGTAGATTTTACTGATTCAA+TGG - chr1_4:19967232-19967251 None:intergenic 30.0%
!!! TTTTTTAGGATGCTTGCAAT+GGG - chr1_4:19967291-19967310 None:intergenic 30.0%
!!! TTTTTTTAGGATGCTTGCAA+TGG - chr1_4:19967292-19967311 None:intergenic 30.0%
! CAGTACAATGATCACATTTT+TGG + chr1_4:19967378-19967397 Msa0155030:intron 30.0%
!!! AGTTGTTCATTGTTTTGAAC+TGG + chr1_4:19967434-19967453 Msa0155030:intron 30.0%
!! GTTATTTCTCTGACTCTTAA+AGG + chr1_4:19967476-19967495 Msa0155030:intron 30.0%
AGGATCTGTAAACAAATTGT+TGG + chr1_4:19967502-19967521 Msa0155030:intron 30.0%
ATTCAAGTATTTGACCTTGT+TGG - chr1_4:19967552-19967571 None:intergenic 30.0%
AGAATAAACCTTTACAGTAG+TGG - chr1_4:19967934-19967953 None:intergenic 30.0%
TACAATATAACCAGTCACAA+TGG - chr1_4:19967980-19967999 None:intergenic 30.0%
! TTGGATAAGCTCTATGTTTT+AGG + chr1_4:19968055-19968074 Msa0155030:CDS 30.0%
!! TATGTTTTAGGCACAAATTG+TGG + chr1_4:19968067-19968086 Msa0155030:CDS 30.0%
TGAGTTTATGCAAGATTACA+AGG + chr1_4:19968258-19968277 Msa0155030:intron 30.0%
TTTAGCTGTTTATCCAAACA+TGG + chr1_4:19968562-19968581 Msa0155030:intron 30.0%
GATGTATTAAGAAGATGAGA+TGG + chr1_4:19968637-19968656 Msa0155030:intron 30.0%
TGGTTAAATGTGGAGAAATA+AGG + chr1_4:19968735-19968754 Msa0155030:intron 30.0%
GGTTAAATGTGGAGAAATAA+GGG + chr1_4:19968736-19968755 Msa0155030:intron 30.0%
AGAAAATTGCATTGTTCGAA+TGG + chr1_4:19968775-19968794 Msa0155030:intron 30.0%
! GCTTAAAACTGCAGATTTTT+GGG + chr1_4:19969040-19969059 Msa0155030:intron 30.0%
AGTAAGGCAATATATAACCT+TGG - chr1_4:19969119-19969138 None:intergenic 30.0%
GTTTAAACAGAAACTGAGTA+AGG - chr1_4:19969135-19969154 None:intergenic 30.0%
CCGTGGAATAGTAAAATAAA+GGG - chr1_4:19969215-19969234 None:intergenic 30.0%
!!! CCCTTTATTTTACTATTCCA+CGG + chr1_4:19969212-19969231 Msa0155030:intron 30.0%
TCCGTGGAATAGTAAAATAA+AGG - chr1_4:19969216-19969235 None:intergenic 30.0%
!!! AGCTGTTTTGACTATACAAA+TGG + chr1_4:19969457-19969476 Msa0155030:CDS 30.0%
ACACGTAGATGTAAAAAACT+CGG - chr1_4:19969555-19969574 None:intergenic 30.0%
! TGATGGTGAAGAAATTAGAA+TGG - chr1_4:19969598-19969617 None:intergenic 30.0%
! TTAGATGGTGTGATATTTTC+AGG + chr1_4:19969648-19969667 Msa0155030:intron 30.0%
ATCCACAATATATTACTGTC+AGG + chr1_4:19969728-19969747 Msa0155030:CDS 30.0%
TACCTGACAGTAATATATTG+TGG - chr1_4:19969733-19969752 None:intergenic 30.0%
TAAAGTGCAAAAAGAGACTT+AGG - chr1_4:19969773-19969792 None:intergenic 30.0%
! GTCTCTTTTTGCACTTTATA+TGG + chr1_4:19969775-19969794 Msa0155030:intron 30.0%
CGTACATAAATGTTTCTTGA+AGG + chr1_4:19969820-19969839 Msa0155030:intron 30.0%
! TATTTTGTTCTTGAAACGAC+AGG + chr1_4:19969873-19969892 Msa0155030:intron 30.0%
!!! TATCTATTTTTTCGAGAGAG+AGG - chr1_4:19969999-19970018 None:intergenic 30.0%
! AACTTTTCGCTGTATTATTC+AGG + chr1_4:19970020-19970039 Msa0155030:intron 30.0%
! ACTTTTCGCTGTATTATTCA+GGG + chr1_4:19970021-19970040 Msa0155030:intron 30.0%
GCTGATGATAAAGCTAAATT+TGG + chr1_4:19970078-19970097 Msa0155030:CDS 30.0%
AAAGCTAAATTTGGTATGCT+TGG + chr1_4:19970087-19970106 Msa0155030:intron 30.0%
TAAATGTAGGATAAATGTCG+AGG - chr1_4:19970165-19970184 None:intergenic 30.0%
CAGATTCAAGTACTAAATGT+AGG - chr1_4:19970178-19970197 None:intergenic 30.0%
CTACATTTAGTACTTGAATC+TGG + chr1_4:19970176-19970195 Msa0155030:intron 30.0%
AAATAAAGCATGTGAACATG+AGG - chr1_4:19970274-19970293 None:intergenic 30.0%
! AAATGGATTTATCTCTCCAT+GGG + chr1_4:19970314-19970333 Msa0155030:intron 30.0%
AATGTGAAGTTAACTTACCA+TGG + chr1_4:19970339-19970358 Msa0155030:intron 30.0%
GATACTTAAGGTAAAAACCA+TGG - chr1_4:19970359-19970378 None:intergenic 30.0%
TGATTAAATCAGACATTCCA+AGG - chr1_4:19970427-19970446 None:intergenic 30.0%
TTGGAATGTCTGATTTAATC+AGG + chr1_4:19970426-19970445 Msa0155030:intron 30.0%
! TCAGGTTTCCAACAAATTTT+GGG - chr1_4:19970473-19970492 None:intergenic 30.0%
! ATCAGGTTTCCAACAAATTT+TGG - chr1_4:19970474-19970493 None:intergenic 30.0%
CATTTGTATGCTTAACATAG+TGG + chr1_4:19970565-19970584 Msa0155030:intron 30.0%
TACGTATAAATAGTTCCGAA+TGG - chr1_4:19970677-19970696 None:intergenic 30.0%
GGAACTATTTATACGTAAAC+CGG + chr1_4:19970680-19970699 Msa0155030:CDS 30.0%
ATTTATACGTAAACCGGATA+TGG + chr1_4:19970686-19970705 Msa0155030:CDS 30.0%
TTTATACGTAAACCGGATAT+GGG + chr1_4:19970687-19970706 Msa0155030:CDS 30.0%
GTTGAAACATAAATTGTTGC+AGG + chr1_4:19970784-19970803 Msa0155030:intron 30.0%
GTGGAAATGTACAACAAAAA+TGG + chr1_4:19970843-19970862 Msa0155030:CDS 30.0%
!! CTAATGGATTCATATGCTAA+TGG + chr1_4:19970899-19970918 Msa0155030:three_prime_UTR 30.0%
! TTTTTCATGGTACACAATAC+AGG + chr1_4:19971103-19971122 Msa0155030:three_prime_UTR 30.0%
AAAGAAAAAGAAGAGGTGGT+AGG - chr1_4:19963492-19963511 None:intergenic 35.0%
!! TCTGATCCTTCTTCTTGTTT+TGG + chr1_4:19963701-19963720 Msa0155030:intron 35.0%
AGAATCCTCCATTTCAAAAC+AGG + chr1_4:19963728-19963747 Msa0155030:intron 35.0%
TAAGAATGCTTGTGCTTTCT+TGG + chr1_4:19963854-19963873 Msa0155030:CDS 35.0%
AAGAATGCTTGTGCTTTCTT+GGG + chr1_4:19963855-19963874 Msa0155030:CDS 35.0%
TTAGCGTTATGTCAGATGTA+GGG + chr1_4:19964055-19964074 Msa0155030:intron 35.0%
TGCATAATATATGCAAGGTC+TGG + chr1_4:19964115-19964134 Msa0155030:intron 35.0%
GCATAATATATGCAAGGTCT+GGG + chr1_4:19964116-19964135 Msa0155030:intron 35.0%
CATAATATATGCAAGGTCTG+GGG + chr1_4:19964117-19964136 Msa0155030:intron 35.0%
! TTAATCCCTACATCTTTTGG+TGG - chr1_4:19964158-19964177 None:intergenic 35.0%
TAATCGAACCTAAGACCTTA+AGG - chr1_4:19964248-19964267 None:intergenic 35.0%
GTCTTAGGTTCGATTATCTT+CGG + chr1_4:19964252-19964271 Msa0155030:intron 35.0%
!! ATTATCTTCGGTGCCAATTT+GGG + chr1_4:19964264-19964283 Msa0155030:intron 35.0%
GCATTAAGTCCAATAGTACT+GGG + chr1_4:19964335-19964354 Msa0155030:intron 35.0%
CATTTCATTCCCAGTACTAT+TGG - chr1_4:19964347-19964366 None:intergenic 35.0%
! AGTACTGGGAATGAAATGAA+TGG + chr1_4:19964349-19964368 Msa0155030:intron 35.0%
!! TCCTACTATGTTTTTACCCT+TGG - chr1_4:19964482-19964501 None:intergenic 35.0%
ACTTTAGTCGGAGAAGAAAA+GGG - chr1_4:19964571-19964590 None:intergenic 35.0%
AACTTTAGTCGGAGAAGAAA+AGG - chr1_4:19964572-19964591 None:intergenic 35.0%
CAGATTCTTCTACACTAGAA+TGG - chr1_4:19964716-19964735 None:intergenic 35.0%
CATTCTAGTGTAGAAGAATC+TGG + chr1_4:19964714-19964733 Msa0155030:intron 35.0%
GATGGTTGAATTAGGCATAA+TGG - chr1_4:19964937-19964956 None:intergenic 35.0%
AAATTGGAACCTGTTGTTCA+TGG + chr1_4:19965082-19965101 Msa0155030:CDS 35.0%
GTCAGAATATACCTTCAACA+GGG - chr1_4:19965186-19965205 None:intergenic 35.0%
AGTCAGAATATACCTTCAAC+AGG - chr1_4:19965187-19965206 None:intergenic 35.0%
GTTTCATACTCATTAGAACG+GGG - chr1_4:19965235-19965254 None:intergenic 35.0%
AAATGTAAAGAATGGCCAAG+AGG - chr1_4:19965361-19965380 None:intergenic 35.0%
TAGTTAGGCTGCCTATAAAT+AGG + chr1_4:19965458-19965477 Msa0155030:intron 35.0%
AGTTAGGCTGCCTATAAATA+GGG + chr1_4:19965459-19965478 Msa0155030:intron 35.0%
AAAGTATGATAGGAACAGAC+TGG - chr1_4:19965606-19965625 None:intergenic 35.0%
CTGTTCCTATCATACTTTGA+TGG + chr1_4:19965608-19965627 Msa0155030:intron 35.0%
GTTTCGGTTTATCAACTTCA+TGG + chr1_4:19965723-19965742 Msa0155030:intron 35.0%
TCAAGCAATGGTAGCATTTA+CGG - chr1_4:19965782-19965801 None:intergenic 35.0%
! TGTTTATCCAACAAGGCATT+AGG - chr1_4:19965890-19965909 None:intergenic 35.0%
AGGAACTTGTGAAACTGTTA+AGG - chr1_4:19966092-19966111 None:intergenic 35.0%
! TTTTACGATGAGACTGTGTT+TGG + chr1_4:19966156-19966175 Msa0155030:intron 35.0%
! TTCTTTTCATAGGAGCTCAA+TGG + chr1_4:19966285-19966304 Msa0155030:intron 35.0%
TGAAATGCTTAAATCAGGCA+TGG + chr1_4:19966334-19966353 Msa0155030:CDS 35.0%
! AAGCTGTCATTTGTGTACAA+AGG + chr1_4:19966360-19966379 Msa0155030:CDS 35.0%
!! CTTTTGTTGAGTGTTGTTCT+AGG - chr1_4:19966974-19966993 None:intergenic 35.0%
!!! TTTTTAGGATGCTTGCAATG+GGG - chr1_4:19967290-19967309 None:intergenic 35.0%
TTGGTTCAGAGAATCTCTTA+CGG - chr1_4:19967590-19967609 None:intergenic 35.0%
! CTCAATCATTGGTAATTGAC+AGG - chr1_4:19967638-19967657 None:intergenic 35.0%
AATTGCAGCATTAAGATCTG+TGG + chr1_4:19968018-19968037 Msa0155030:CDS 35.0%
AGAGCTTATCCAAATTCAAG+TGG - chr1_4:19968048-19968067 None:intergenic 35.0%
! ATAATGGAGAACTGTTTCAG+GGG - chr1_4:19968239-19968258 None:intergenic 35.0%
! CATAATGGAGAACTGTTTCA+GGG - chr1_4:19968240-19968259 None:intergenic 35.0%
! TCATAATGGAGAACTGTTTC+AGG - chr1_4:19968241-19968260 None:intergenic 35.0%
AAATTTCCGTAAGCTATCTC+AGG - chr1_4:19968439-19968458 None:intergenic 35.0%
! GGACAGAAACTTTTCATCAA+AGG - chr1_4:19968843-19968862 None:intergenic 35.0%
! ACTACTACAATGTATTGGTC+AGG + chr1_4:19968868-19968887 Msa0155030:intron 35.0%
! GGCTTAAAACTGCAGATTTT+TGG + chr1_4:19969039-19969058 Msa0155030:intron 35.0%
! ACAGTGTTATTGATTGCGAA+TGG - chr1_4:19969082-19969101 None:intergenic 35.0%
! TGTCTCTTGCTTTATTACCA+AGG + chr1_4:19969099-19969118 Msa0155030:intron 35.0%
CAGTTTCTGTTTAAACTTCC+TGG + chr1_4:19969139-19969158 Msa0155030:intron 35.0%
! GTTCACTTAAAGCATTTGGA+CGG + chr1_4:19969165-19969184 Msa0155030:CDS 35.0%
CATCAACCAAATCATTTGCT+GGG - chr1_4:19969303-19969322 None:intergenic 35.0%
ACATCAACCAAATCATTTGC+TGG - chr1_4:19969304-19969323 None:intergenic 35.0%
ACAAATAACCTGTAGCAAGA+TGG - chr1_4:19969334-19969353 None:intergenic 35.0%
!!! ATGCTGATTCCGGAATATTT+TGG - chr1_4:19969700-19969719 None:intergenic 35.0%
! CTTTTCGCTGTATTATTCAG+GGG + chr1_4:19970022-19970041 Msa0155030:intron 35.0%
! TTTTCGCTGTATTATTCAGG+GGG + chr1_4:19970023-19970042 Msa0155030:intron 35.0%
TTAACAGTCTCCATGACAAA+TGG - chr1_4:19970057-19970076 None:intergenic 35.0%
ATTTGTCATGGAGACTGTTA+AGG + chr1_4:19970056-19970075 Msa0155030:CDS 35.0%
! GAAATGGATTTATCTCTCCA+TGG + chr1_4:19970313-19970332 Msa0155030:intron 35.0%
TGTCTGATTTAATCAGGAAG+AGG + chr1_4:19970432-19970451 Msa0155030:intron 35.0%
! CAGGTTTCCAACAAATTTTG+GGG - chr1_4:19970472-19970491 None:intergenic 35.0%
! TCTGTTTTCTATGTTCAGGT+TGG + chr1_4:19970607-19970626 Msa0155030:intron 35.0%
CGCTTGATTATCATACCATT+CGG + chr1_4:19970659-19970678 Msa0155030:CDS 35.0%
TTATACGTAAACCGGATATG+GGG + chr1_4:19970688-19970707 Msa0155030:CDS 35.0%
TCTCAGAGAAGTGATTCTAA+TGG + chr1_4:19970883-19970902 Msa0155030:exon 35.0%
! AGACACAATGCATATTTTGC+AGG - chr1_4:19970956-19970975 None:intergenic 35.0%
!! GTCAAAACTTTGTTTCTAGC+TGG + chr1_4:19971018-19971037 Msa0155030:three_prime_UTR 35.0%
TGAATTGTGTGGAACAGAAG+AGG + chr1_4:19963336-19963355 Msa0155030:five_prime_UTR 40.0%
AGCACGAATGGATAGAGAAA+GGG - chr1_4:19963436-19963455 None:intergenic 40.0%
AAGCACGAATGGATAGAGAA+AGG - chr1_4:19963437-19963456 None:intergenic 40.0%
! AGAAGAAGAAGAAGCACGAA+TGG - chr1_4:19963448-19963467 None:intergenic 40.0%
TCTTCTTCTTCTGCATCACA+AGG + chr1_4:19963456-19963475 Msa0155030:CDS 40.0%
CATGCTATGAACCACTGTTA+CGG + chr1_4:19963513-19963532 Msa0155030:intron 40.0%
TCATCAAATTAGGCATGTCC+TGG - chr1_4:19963623-19963642 None:intergenic 40.0%
ACACGGACACTCATCAAATT+AGG - chr1_4:19963633-19963652 None:intergenic 40.0%
GAGAAAAGAGAAGTGAAGGA+AGG - chr1_4:19963674-19963693 None:intergenic 40.0%
CTGCTACCAAAACAAGAAGA+AGG - chr1_4:19963710-19963729 None:intergenic 40.0%
!!! TCTCCAGTCCTGTTTTGAAA+TGG - chr1_4:19963739-19963758 None:intergenic 40.0%
CAAAACAGGACTGGAGAAAA+AGG + chr1_4:19963742-19963761 Msa0155030:CDS 40.0%
! GACTGCATTGATCTTTAGCA+GGG - chr1_4:19963797-19963816 None:intergenic 40.0%
CTGCTAAAGATCAATGCAGT+CGG + chr1_4:19963796-19963815 Msa0155030:CDS 40.0%
GTTAGCGTTATGTCAGATGT+AGG + chr1_4:19964054-19964073 Msa0155030:intron 40.0%
!! GATTATCTTCGGTGCCAATT+TGG + chr1_4:19964263-19964282 Msa0155030:intron 40.0%
ACTATTGGACTTAATGCGTG+TGG - chr1_4:19964332-19964351 None:intergenic 40.0%
CGCATTAAGTCCAATAGTAC+TGG + chr1_4:19964334-19964353 Msa0155030:intron 40.0%
! TCTCTTTTCAATGCGAGACT+CGG - chr1_4:19964390-19964409 None:intergenic 40.0%
CTAACTCATCCTTACAACAC+CGG - chr1_4:19964458-19964477 None:intergenic 40.0%
GCCAAGGGTAAAAACATAGT+AGG + chr1_4:19964478-19964497 Msa0155030:intron 40.0%
! ATCAATTAGTCTGCACCTAG+TGG + chr1_4:19964673-19964692 Msa0155030:intron 40.0%
ACCTTAGATGAGACCTACTT+AGG + chr1_4:19965124-19965143 Msa0155030:CDS 40.0%
CCTTAGATGAGACCTACTTA+GGG + chr1_4:19965125-19965144 Msa0155030:CDS 40.0%
CTTAGATGAGACCTACTTAG+GGG + chr1_4:19965126-19965145 Msa0155030:CDS 40.0%
ATGAGGAACTTCTGTATGCT+CGG + chr1_4:19965152-19965171 Msa0155030:CDS 40.0%
GTTTCTCTGGTATGTGACAT+TGG + chr1_4:19965401-19965420 Msa0155030:intron 40.0%
! TTGAAAGAATACGTGCCGTT+TGG + chr1_4:19965500-19965519 Msa0155030:intron 40.0%
CTGCCACTATTCTATAATCC+AGG + chr1_4:19965552-19965571 Msa0155030:intron 40.0%
GAAAATGCGGAACAATTTCC+TGG - chr1_4:19965573-19965592 None:intergenic 40.0%
AGGACTGTCAAATCAAGCAA+TGG - chr1_4:19965794-19965813 None:intergenic 40.0%
!! GTGAAAAAAATGATGGGCCT+TGG + chr1_4:19965843-19965862 Msa0155030:intron 40.0%
GACATTGAAACCTTACTCCA+AGG - chr1_4:19965863-19965882 None:intergenic 40.0%
ATGCTATCATGGAGAGCTTA+TGG + chr1_4:19966013-19966032 Msa0155030:intron 40.0%
AACCTTGCTAAAACAGGTCT+GGG - chr1_4:19966560-19966579 None:intergenic 40.0%
!! AGTGCAAGGGTATTAAGGTT+AGG - chr1_4:19966718-19966737 None:intergenic 40.0%
!! CAACAAGTGCAAGGGTATTA+AGG - chr1_4:19966723-19966742 None:intergenic 40.0%
! TAATACCCTTGCACTTGTTG+AGG + chr1_4:19966723-19966742 Msa0155030:CDS 40.0%
ACAAACCTCAACAAGTGCAA+GGG - chr1_4:19966731-19966750 None:intergenic 40.0%
CGTTTCGTTCAAATGGATGA+AGG + chr1_4:19966880-19966899 Msa0155030:intron 40.0%
TCTTCCAAAACTAGGGAAAC+CGG - chr1_4:19967265-19967284 None:intergenic 40.0%
!!! TTTTAGGATGCTTGCAATGG+GGG - chr1_4:19967289-19967308 None:intergenic 40.0%
TCTCTGACTCTTAAAGGAGA+AGG + chr1_4:19967482-19967501 Msa0155030:intron 40.0%
AACTTGTAGTGAGTCCAACA+AGG + chr1_4:19967535-19967554 Msa0155030:intron 40.0%
TTTCATCATTGACAGGCTTC+AGG + chr1_4:19967861-19967880 Msa0155030:intron 40.0%
AACCAGTCACAATGGAGAAA+GGG - chr1_4:19967972-19967991 None:intergenic 40.0%
TAACCAGTCACAATGGAGAA+AGG - chr1_4:19967973-19967992 None:intergenic 40.0%
CTATGTTCCTTATTCGACAG+TGG + chr1_4:19968162-19968181 Msa0155030:intron 40.0%
AAGCTATCTCAGGAAGCTAA+TGG - chr1_4:19968429-19968448 None:intergenic 40.0%
TAGCTTCCTGAGATAGCTTA+CGG + chr1_4:19968430-19968449 Msa0155030:intron 40.0%
TCGTAGTAGTTAGGAACAGT+TGG + chr1_4:19968687-19968706 Msa0155030:intron 40.0%
CGTAGTAGTTAGGAACAGTT+GGG + chr1_4:19968688-19968707 Msa0155030:intron 40.0%
GTAGTAGTTAGGAACAGTTG+GGG + chr1_4:19968689-19968708 Msa0155030:intron 40.0%
GTGGAGAAATAAGGGTAGAA+AGG + chr1_4:19968744-19968763 Msa0155030:intron 40.0%
TAGAAAAGTCTGAGGACAGT+TGG - chr1_4:19968967-19968986 None:intergenic 40.0%
! AGACTTTTCTACAACCTCCA+TGG + chr1_4:19968976-19968995 Msa0155030:intron 40.0%
CAACCTTCACAAATAGACCA+TGG - chr1_4:19968996-19969015 None:intergenic 40.0%
!!! AGATTTTTGGGTTTCCTCCA+TGG + chr1_4:19969052-19969071 Msa0155030:intron 40.0%
! GTGTTATTGATTGCGAATGG+TGG - chr1_4:19969079-19969098 None:intergenic 40.0%
TTCTGTTTAAACTTCCTGGC+AGG + chr1_4:19969143-19969162 Msa0155030:intron 40.0%
! GCAGGTTCACTTAAAGCATT+TGG + chr1_4:19969161-19969180 Msa0155030:intron 40.0%
TTTGCTGGGAGACAGAAATA+AGG - chr1_4:19969289-19969308 None:intergenic 40.0%
TTATTGCTCCATCTTGCTAC+AGG + chr1_4:19969323-19969342 Msa0155030:CDS 40.0%
! TGAGTTTAGAGTCACGAGTT+TGG + chr1_4:19969362-19969381 Msa0155030:CDS 40.0%
!! GGTGTGATATTTTCAGGACT+TGG + chr1_4:19969654-19969673 Msa0155030:intron 40.0%
!! TATTTTCAGGACTTGGTCGT+TGG + chr1_4:19969661-19969680 Msa0155030:intron 40.0%
! GACTTGGTCGTTGGATATAT+GGG + chr1_4:19969670-19969689 Msa0155030:CDS 40.0%
!! ATGTTGTGTCATGCTGATTC+CGG - chr1_4:19969710-19969729 None:intergenic 40.0%
TAAACCGCAATTGACAACAC+TGG - chr1_4:19970203-19970222 None:intergenic 40.0%
GTTAACTTCACATTCTCCCA+TGG - chr1_4:19970333-19970352 None:intergenic 40.0%
!!! TTTCCAACAAATTTTGGGGC+AGG - chr1_4:19970468-19970487 None:intergenic 40.0%
!! TGGCTCTGTTTTCTATGTTC+AGG + chr1_4:19970603-19970622 Msa0155030:intron 40.0%
!! TATGTTCAGGTTGGTCCAAA+GGG + chr1_4:19970616-19970635 Msa0155030:intron 40.0%
CTGTTGCAACAAAGTGAAGA+TGG - chr1_4:19970747-19970766 None:intergenic 40.0%
TAAATTGTTGCAGGGCTGAT+AGG + chr1_4:19970793-19970812 Msa0155030:intron 40.0%
AGAAGAGGCCACATCATCAT+CGG + chr1_4:19963351-19963370 Msa0155030:five_prime_UTR 45.0%
GCACGAATGGATAGAGAAAG+GGG - chr1_4:19963435-19963454 None:intergenic 45.0%
!! TTATCGGTGTCGTTAGTGTC+CGG - chr1_4:19963542-19963561 None:intergenic 45.0%
AATTAGGCATGTCCTGGACA+CGG - chr1_4:19963617-19963636 None:intergenic 45.0%
TGCATGCAGACTATGCAACA+CGG - chr1_4:19963650-19963669 None:intergenic 45.0%
!!! CCAGTCCTGTTTTGAAATGG+AGG - chr1_4:19963736-19963755 None:intergenic 45.0%
CCTCCATTTCAAAACAGGAC+TGG + chr1_4:19963733-19963752 Msa0155030:CDS 45.0%
! GCATTGATCTTTAGCAGGGT+AGG - chr1_4:19963793-19963812 None:intergenic 45.0%
! CGACTGCATTGATCTTTAGC+AGG - chr1_4:19963798-19963817 None:intergenic 45.0%
AAAGATCAATGCAGTCGGTG+TGG + chr1_4:19963801-19963820 Msa0155030:CDS 45.0%
! TGTGCTTAGCTCAGTTGGTA+AGG + chr1_4:19964088-19964107 Msa0155030:intron 45.0%
!!! TACATCTTTTGGTGGTGTCC+GGG - chr1_4:19964150-19964169 None:intergenic 45.0%
!!! CTACATCTTTTGGTGGTGTC+CGG - chr1_4:19964151-19964170 None:intergenic 45.0%
GGACACCACCAAAAGATGTA+GGG + chr1_4:19964150-19964169 Msa0155030:intron 45.0%
AATACGGTAACGTGAGACCT+TGG + chr1_4:19964211-19964230 Msa0155030:intron 45.0%
! TTAAGGAGGAGCATACTCCA+AGG - chr1_4:19964231-19964250 None:intergenic 45.0%
TTGGAGTATGCTCCTCCTTA+AGG + chr1_4:19964230-19964249 Msa0155030:intron 45.0%
ATGCTCCTCCTTAAGGTCTT+AGG + chr1_4:19964237-19964256 Msa0155030:intron 45.0%
TCGAACCTAAGACCTTAAGG+AGG - chr1_4:19964245-19964264 None:intergenic 45.0%
CTAAACTAGCCCACCCAAAT+TGG - chr1_4:19964280-19964299 None:intergenic 45.0%
! CTCTTTTCAATGCGAGACTC+GGG - chr1_4:19964389-19964408 None:intergenic 45.0%
AGAGACACTCCTCATCTTAG+AGG + chr1_4:19964432-19964451 Msa0155030:intron 45.0%
!! CGGTGTTGTAAGGATGAGTT+AGG + chr1_4:19964456-19964475 Msa0155030:intron 45.0%
TGTAAGGATGAGTTAGGCCA+AGG + chr1_4:19964462-19964481 Msa0155030:intron 45.0%
GTAAGGATGAGTTAGGCCAA+GGG + chr1_4:19964463-19964482 Msa0155030:intron 45.0%
GAACCTGTTGTTCATGGTAG+AGG + chr1_4:19965088-19965107 Msa0155030:CDS 45.0%
CTTCCTCTACCATGAACAAC+AGG - chr1_4:19965094-19965113 None:intergenic 45.0%
CCCTAAGTAGGTCTCATCTA+AGG - chr1_4:19965128-19965147 None:intergenic 45.0%
TTCCTCATAGACCCCTAAGT+AGG - chr1_4:19965140-19965159 None:intergenic 45.0%
CGGAAACTTAACCCTGTTGA+AGG + chr1_4:19965172-19965191 Msa0155030:CDS 45.0%
!!! TGGTTTTTTGGTGGACCTCT+TGG + chr1_4:19965343-19965362 Msa0155030:intron 45.0%
CTCTGGTATGTGACATTGGT+AGG + chr1_4:19965405-19965424 Msa0155030:intron 45.0%
ATTGGTAGGTAACCCCTTTG+TGG + chr1_4:19965419-19965438 Msa0155030:intron 45.0%
!! AATACGTGCCGTTTGGCATT+GGG + chr1_4:19965507-19965526 Msa0155030:intron 45.0%
GAATAGTGGCAGACCTTTGA+GGG - chr1_4:19965544-19965563 None:intergenic 45.0%
AGAATAGTGGCAGACCTTTG+AGG - chr1_4:19965545-19965564 None:intergenic 45.0%
GGAGGCCATCAAAGTATGAT+AGG - chr1_4:19965616-19965635 None:intergenic 45.0%
!! AAATGATGGGCCTTGGAGTA+AGG + chr1_4:19965850-19965869 Msa0155030:intron 45.0%
GTCAATGCCTAATGCCTTGT+TGG + chr1_4:19965880-19965899 Msa0155030:intron 45.0%
TTCATAGGAGCTCAATGGAC+TGG + chr1_4:19966290-19966309 Msa0155030:intron 45.0%
CAACCTTGCTAAAACAGGTC+TGG - chr1_4:19966561-19966580 None:intergenic 45.0%
!!! CAGACCTGTTTTAGCAAGGT+TGG + chr1_4:19966559-19966578 Msa0155030:intron 45.0%
GAAGCCAACCTTGCTAAAAC+AGG - chr1_4:19966566-19966585 None:intergenic 45.0%
TTAGCAGCCATCACTTCTTC+TGG - chr1_4:19966673-19966692 None:intergenic 45.0%
GAAGAAGTGATGGCTGCTAA+AGG + chr1_4:19966673-19966692 Msa0155030:CDS 45.0%
CACAAACCTCAACAAGTGCA+AGG - chr1_4:19966732-19966751 None:intergenic 45.0%
GGATGAAGGTTACAATCCAC+AGG + chr1_4:19966894-19966913 Msa0155030:intron 45.0%
TGAAGGTTACAATCCACAGG+CGG + chr1_4:19966897-19966916 Msa0155030:intron 45.0%
!! TCTAGGGCGTTGTAGTGTAT+TGG + chr1_4:19966925-19966944 Msa0155030:intron 45.0%
ACTTGAGAATGCTCTAGCCT+AGG + chr1_4:19967179-19967198 Msa0155030:intron 45.0%
AAATCTACGGGCGAACAATC+CGG + chr1_4:19967243-19967262 Msa0155030:intron 45.0%
! CAATCCGGTTTCCCTAGTTT+TGG + chr1_4:19967258-19967277 Msa0155030:intron 45.0%
TGGGGGATCTTCCAAAACTA+GGG - chr1_4:19967272-19967291 None:intergenic 45.0%
ATGGGGGATCTTCCAAAACT+AGG - chr1_4:19967273-19967292 None:intergenic 45.0%
TTGAAGGACCAGATGCTCTT+AGG - chr1_4:19967410-19967429 None:intergenic 45.0%
! GTCAAGCGTCTTCTTTTCTG+TGG + chr1_4:19967885-19967904 Msa0155030:intron 45.0%
! CGTCTTCTTTTCTGTGGTGT+AGG + chr1_4:19967891-19967910 Msa0155030:intron 45.0%
CCTTTACAGTAGTGGTACCT+TGG - chr1_4:19967926-19967945 None:intergenic 45.0%
! CCAAGGTACCACTACTGTAA+AGG + chr1_4:19967923-19967942 Msa0155030:intron 45.0%
TTCCCTTTCTCCATTGTGAC+TGG + chr1_4:19967967-19967986 Msa0155030:intron 45.0%
! TGTGGAGCACCACTTGAATT+TGG + chr1_4:19968036-19968055 Msa0155030:CDS 45.0%
AGGCACAAATTGTGGTATGC+AGG + chr1_4:19968075-19968094 Msa0155030:intron 45.0%
CCATTGTCCACTGTCGAATA+AGG - chr1_4:19968172-19968191 None:intergenic 45.0%
CCTTATTCGACAGTGGACAA+TGG + chr1_4:19968169-19968188 Msa0155030:intron 45.0%
AAACTTATCCAGTCCTTCCC+TGG - chr1_4:19968197-19968216 None:intergenic 45.0%
TGTTTATCCAAACATGGCCC+TGG + chr1_4:19968568-19968587 Msa0155030:intron 45.0%
GTTTATCCAAACATGGCCCT+GGG + chr1_4:19968569-19968588 Msa0155030:intron 45.0%
TTTATCCAAACATGGCCCTG+GGG + chr1_4:19968570-19968589 Msa0155030:intron 45.0%
!! GTAGACAGCTTGGTGTAACA+TGG + chr1_4:19968594-19968613 Msa0155030:intron 45.0%
AAAGGGAGCTCGTAGTAGTT+AGG + chr1_4:19968678-19968697 Msa0155030:intron 45.0%
GGAGGTTGTAGAAAAGTCTG+AGG - chr1_4:19968975-19968994 None:intergenic 45.0%
CCTTCACAAATAGACCATGG+AGG - chr1_4:19968993-19969012 None:intergenic 45.0%
CCTCCATGGTCTATTTGTGA+AGG + chr1_4:19968990-19969009 Msa0155030:intron 45.0%
TAAGCCATCATGTAACGCCA+TGG - chr1_4:19969025-19969044 None:intergenic 45.0%
! ATGCTTTAAGTGAACCTGCC+AGG - chr1_4:19969160-19969179 None:intergenic 45.0%
TTTGGACGGTCGTATTGAAG+AGG + chr1_4:19969179-19969198 Msa0155030:CDS 45.0%
CTGTCTCCCAGCAAATGATT+TGG + chr1_4:19969294-19969313 Msa0155030:CDS 45.0%
! GGACTTGGTCGTTGGATATA+TGG + chr1_4:19969669-19969688 Msa0155030:intron 45.0%
ATGGGCGTGCCAAAATATTC+CGG + chr1_4:19969688-19969707 Msa0155030:CDS 45.0%
TGAAACGACAGGAATGAACG+TGG + chr1_4:19969884-19969903 Msa0155030:intron 45.0%
GCTGTATTATTCAGGGGGAT+AGG + chr1_4:19970028-19970047 Msa0155030:intron 45.0%
TGGACCAGTGTTGTCAATTG+CGG + chr1_4:19970196-19970215 Msa0155030:intron 45.0%
!! CTATGTTCAGGTTGGTCCAA+AGG + chr1_4:19970615-19970634 Msa0155030:intron 45.0%
CGTGCAAATTCAATGCCCTT+TGG - chr1_4:19970634-19970653 None:intergenic 45.0%
ACCTTTCCTTTCCCCATATC+CGG - chr1_4:19970702-19970721 None:intergenic 45.0%
GGATTACATGCTCCAATCAG+TGG + chr1_4:19970920-19970939 Msa0155030:three_prime_UTR 45.0%
!! GAATTATAAAAAAAATAATA+CGG + chr1_4:19964195-19964214 Msa0155030:intron 5.0%
! AGCGAACACCGATGATGATG+TGG - chr1_4:19963362-19963381 None:intergenic 50.0%
TGAACCACTGTTACGGACAC+CGG + chr1_4:19963520-19963539 Msa0155030:intron 50.0%
GCTTGTGCTTTCTTGGGAGA+TGG + chr1_4:19963861-19963880 Msa0155030:CDS 50.0%
GTCTGTGTGCTTAGCTCAGT+TGG + chr1_4:19964083-19964102 Msa0155030:intron 50.0%
!!! ACATCTTTTGGTGGTGTCCG+GGG - chr1_4:19964149-19964168 None:intergenic 50.0%
CGGACACCACCAAAAGATGT+AGG + chr1_4:19964149-19964168 Msa0155030:intron 50.0%
!! ATCTTCGGTGCCAATTTGGG+TGG + chr1_4:19964267-19964286 Msa0155030:intron 50.0%
!! TCTTCGGTGCCAATTTGGGT+GGG + chr1_4:19964268-19964287 Msa0155030:intron 50.0%
ACACTCCTCATCTTAGAGGC+CGG + chr1_4:19964436-19964455 Msa0155030:intron 50.0%
!! TCTTAGAGGCCGGTGTTGTA+AGG + chr1_4:19964446-19964465 Msa0155030:intron 50.0%
ACAGCTCCTGCTTGAAGGAA+AGG + chr1_4:19964543-19964562 Msa0155030:intron 50.0%
AGGGTTCCTTTCCTTCAAGC+AGG - chr1_4:19964552-19964571 None:intergenic 50.0%
GACCTACTTAGGGGTCTATG+AGG + chr1_4:19965135-19965154 Msa0155030:CDS 50.0%
!! GAATACGTGCCGTTTGGCAT+TGG + chr1_4:19965506-19965525 Msa0155030:intron 50.0%
!!! CTCCCAGACCTGTTTTAGCA+AGG + chr1_4:19966555-19966574 Msa0155030:CDS 50.0%
CAGGACACCAGAAGAAGTGA+TGG + chr1_4:19966663-19966682 Msa0155030:intron 50.0%
!! GGACATTGCCTAAGAGCATC+TGG + chr1_4:19967399-19967418 Msa0155030:intron 50.0%
TTTCTGTGGTGTAGGTTGCC+AGG + chr1_4:19967899-19967918 Msa0155030:intron 50.0%
GACAGTGGACAATGGAACCA+GGG + chr1_4:19968177-19968196 Msa0155030:intron 50.0%
! CTTGGTGTAACATGGCCCTA+GGG + chr1_4:19968602-19968621 Msa0155030:intron 50.0%
!! TGATTGCGAATGGTGGACCA+TGG - chr1_4:19969072-19969091 None:intergenic 50.0%
AACTCGGTCGTCCTAAGTTC+AGG - chr1_4:19969539-19969558 None:intergenic 50.0%
GGATAGGCGACCATTTGTCA+TGG + chr1_4:19970044-19970063 Msa0155030:CDS 50.0%
!!! ACAAATTTTGGGGCAGGCTG+AGG - chr1_4:19970462-19970481 None:intergenic 50.0%
CAGCCTGCCCCAAAATTTGT+TGG + chr1_4:19970462-19970481 Msa0155030:CDS 50.0%
CGTAAACCGGATATGGGGAA+AGG + chr1_4:19970693-19970712 Msa0155030:CDS 50.0%
ACCGGATATGGGGAAAGGAA+AGG + chr1_4:19970698-19970717 Msa0155030:CDS 50.0%
CATGCTCCAATCAGTGGCAT+AGG + chr1_4:19970926-19970945 Msa0155030:three_prime_UTR 50.0%
AGGTCAAAGCCTATCCCACC+AGG + chr1_4:19963762-19963781 Msa0155030:CDS 55.0%
TCAAAGCCTATCCCACCAGG+TGG + chr1_4:19963765-19963784 Msa0155030:CDS 55.0%
TAGGTTCCACCTGGTGGGAT+AGG - chr1_4:19963774-19963793 None:intergenic 55.0%
TTAGCAGGGTAGGTTCCACC+TGG - chr1_4:19963783-19963802 None:intergenic 55.0%
!! CAACACCGGCCTCTAAGATG+AGG - chr1_4:19964444-19964463 None:intergenic 55.0%
GCACAACAGCTCCTGCTTGA+AGG + chr1_4:19964538-19964557 Msa0155030:intron 55.0%
TCCCACCTCCCAATGCCAAA+CGG - chr1_4:19965518-19965537 None:intergenic 55.0%
GGAGGTGGGAAAACCCTCAA+AGG + chr1_4:19965528-19965547 Msa0155030:intron 55.0%
CTGGGAGCAAATCTGTCGTC+AGG - chr1_4:19966542-19966561 None:intergenic 55.0%
ATCCACAGGCGGTTCTGTCT+AGG + chr1_4:19966908-19966927 Msa0155030:intron 55.0%
TCCACAGGCGGTTCTGTCTA+GGG + chr1_4:19966909-19966928 Msa0155030:intron 55.0%
CAGTAGTGGTACCTTGGACC+TGG - chr1_4:19967920-19967939 None:intergenic 55.0%
CGACAGTGGACAATGGAACC+AGG + chr1_4:19968176-19968195 Msa0155030:intron 55.0%
GTGGACAATGGAACCAGGGA+AGG + chr1_4:19968181-19968200 Msa0155030:intron 55.0%
CAATGGAACCAGGGAAGGAC+TGG + chr1_4:19968186-19968205 Msa0155030:CDS 55.0%
!! GCTTGGTGTAACATGGCCCT+AGG + chr1_4:19968601-19968620 Msa0155030:intron 55.0%
ATCAAGCTGTCCACGCCCTA+GGG - chr1_4:19968620-19968639 None:intergenic 55.0%
GTCTGAGGACAGTTGGCAAG+AGG - chr1_4:19968960-19968979 None:intergenic 55.0%
TGTGAAGGTTGTCTGCGCCA+TGG + chr1_4:19969005-19969024 Msa0155030:intron 55.0%
TGCGCCATGGCGTTACATGA+TGG + chr1_4:19969018-19969037 Msa0155030:intron 55.0%
!! TTGCGAATGGTGGACCATGG+AGG - chr1_4:19969069-19969088 None:intergenic 55.0%
!!! AATTTTGGGGCAGGCTGAGG+AGG - chr1_4:19970459-19970478 None:intergenic 55.0%
GGCACACCTATGCCACTGAT+TGG - chr1_4:19970935-19970954 None:intergenic 55.0%
GTGTCCGGTGTCCGTAACAG+TGG - chr1_4:19963527-19963546 None:intergenic 60.0%
CAGGGTAGGTTCCACCTGGT+GGG - chr1_4:19963779-19963798 None:intergenic 60.0%
! AAGGTCTGGGGTTCGAACCC+CGG + chr1_4:19964129-19964148 Msa0155030:intron 60.0%
!! ACGTGCCGTTTGGCATTGGG+AGG + chr1_4:19965510-19965529 Msa0155030:intron 60.0%
! TGCCGTTTGGCATTGGGAGG+TGG + chr1_4:19965513-19965532 Msa0155030:intron 60.0%
! GCCGTTTGGCATTGGGAGGT+GGG + chr1_4:19965514-19965533 Msa0155030:intron 60.0%
GGTGTAGGTTGCCAGGTCCA+AGG + chr1_4:19967906-19967925 Msa0155030:intron 60.0%
ACCAAGCTGTCTACGCCCCA+GGG - chr1_4:19968588-19968607 None:intergenic 60.0%
TGTAACATGGCCCTAGGGCG+TGG + chr1_4:19968607-19968626 Msa0155030:intron 60.0%
CATCAAGCTGTCCACGCCCT+AGG - chr1_4:19968621-19968640 None:intergenic 60.0%
TCGGCGTCGTATCCGTGTCC+AGG + chr1_4:19963602-19963621 Msa0155030:intron 65.0%
GCAGGGTAGGTTCCACCTGG+TGG - chr1_4:19963780-19963799 None:intergenic 65.0%
GCCCTAGACAGAACCGCCTG+TGG - chr1_4:19966913-19966932 None:intergenic 65.0%
CTACGCCCCAGGGCCATGTT+TGG - chr1_4:19968578-19968597 None:intergenic 65.0%
CACCAAGCTGTCTACGCCCC+AGG - chr1_4:19968589-19968608 None:intergenic 65.0%
GCCCTGGGGCGTAGACAGCT+TGG + chr1_4:19968584-19968603 Msa0155030:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 19963282 19971189 19963282 ID=Msa0155030;Name=Msa0155030
chr1_4 mRNA 19963282 19971189 19963282 ID=Msa0155030-mRNA-1;Parent=Msa0155030;Name=Msa0155030-mRNA-1;_AED=0.22;_eAED=0.22;_QI=129|0.81|0.82|1|0.93|0.94|17|293|469
chr1_4 exon 19963282 19963477 19963282 ID=Msa0155030-mRNA-1:exon:7326;Parent=Msa0155030-mRNA-1
chr1_4 exon 19963730 19963899 19963730 ID=Msa0155030-mRNA-1:exon:7327;Parent=Msa0155030-mRNA-1
chr1_4 exon 19965082 19965193 19965082 ID=Msa0155030-mRNA-1:exon:7328;Parent=Msa0155030-mRNA-1
chr1_4 exon 19966297 19966381 19966297 ID=Msa0155030-mRNA-1:exon:7329;Parent=Msa0155030-mRNA-1
chr1_4 exon 19966535 19966576 19966535 ID=Msa0155030-mRNA-1:exon:7330;Parent=Msa0155030-mRNA-1
chr1_4 exon 19966666 19966744 19966666 ID=Msa0155030-mRNA-1:exon:7331;Parent=Msa0155030-mRNA-1
chr1_4 exon 19967913 19967920 19967913 ID=Msa0155030-mRNA-1:exon:7332;Parent=Msa0155030-mRNA-1
chr1_4 exon 19968006 19968088 19968006 ID=Msa0155030-mRNA-1:exon:7333;Parent=Msa0155030-mRNA-1
chr1_4 exon 19968182 19968246 19968182 ID=Msa0155030-mRNA-1:exon:7334;Parent=Msa0155030-mRNA-1
chr1_4 exon 19969165 19969200 19969165 ID=Msa0155030-mRNA-1:exon:7335;Parent=Msa0155030-mRNA-1
chr1_4 exon 19969283 19969486 19969283 ID=Msa0155030-mRNA-1:exon:7336;Parent=Msa0155030-mRNA-1
chr1_4 exon 19969670 19969749 19969670 ID=Msa0155030-mRNA-1:exon:7337;Parent=Msa0155030-mRNA-1
chr1_4 exon 19969895 19969964 19969895 ID=Msa0155030-mRNA-1:exon:7338;Parent=Msa0155030-mRNA-1
chr1_4 exon 19970042 19970099 19970042 ID=Msa0155030-mRNA-1:exon:7339;Parent=Msa0155030-mRNA-1
chr1_4 exon 19970448 19970512 19970448 ID=Msa0155030-mRNA-1:exon:7340;Parent=Msa0155030-mRNA-1
chr1_4 exon 19970625 19970719 19970625 ID=Msa0155030-mRNA-1:exon:7341;Parent=Msa0155030-mRNA-1
chr1_4 exon 19970806 19971189 19970806 ID=Msa0155030-mRNA-1:exon:7342;Parent=Msa0155030-mRNA-1
chr1_4 five_prime_UTR 19963282 19963410 19963282 ID=Msa0155030-mRNA-1:five_prime_utr;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19963411 19963477 19963411 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19963730 19963899 19963730 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19965082 19965193 19965082 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19966297 19966381 19966297 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19966535 19966576 19966535 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19966666 19966744 19966666 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19967913 19967920 19967913 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19968006 19968088 19968006 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19968182 19968246 19968182 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19969165 19969200 19969165 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19969283 19969486 19969283 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19969670 19969749 19969670 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19969895 19969964 19969895 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19970042 19970099 19970042 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19970448 19970512 19970448 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19970625 19970719 19970625 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 CDS 19970806 19970896 19970806 ID=Msa0155030-mRNA-1:cds;Parent=Msa0155030-mRNA-1
chr1_4 three_prime_UTR 19970897 19971189 19970897 ID=Msa0155030-mRNA-1:three_prime_utr;Parent=Msa0155030-mRNA-1
Gene Sequence

>Msa0155030

ATGTCTTCTTTCTCTTCGCTACCCCTTTCTCTATCCATTCGTGCTTCTTCTTCTTCTGCATCACAAGAATCCTCCATTTCAAAACAGGACTGGAGAAAAAGGTCAAAGCCTATCCCACCAGGTGGAACCTACCCTGCTAAAGATCAATGCAGTCGGTGTGGATTGTGTGATACATATTATATTGCTCATGTTAAGAATGCTTGTGCTTTCTTGGGAGATGGAATGTCTAAAATTGAAAAATTGGAACCTGTTGTTCATGGTAGAGGAAGAAAAACTGATACCTTAGATGAGACCTACTTAGGGGTCTATGAGGAACTTCTGTATGCTCGGAAACTTAACCCTGTTGAAGGAGCTCAATGGACTGGTATAGTAACAACCATTGCAATTGAAATGCTTAAATCAGGCATGGTTGAAGCTGTCATTTGTGTACAAAGTGATCCTGACGACAGATTTGCTCCCAGACCTGTTTTAGCAAGGACACCAGAAGAAGTGATGGCTGCTAAAGGCGTCAAGCCAACATTATCTCCTAACCTTAATACCCTTGCACTTGTTGAGGTTGCCAGAATAATTTCTTCAATTGCAGCATTAAGATCTGTGGAGCACCACTTGAATTTGGATAAGCTCTATGTTTTAGGCACAAATTGTGTGGACAATGGAACCAGGGAAGGACTGGATAAGTTTCTAAATGCTGCGAGTGATTCCCCTGAAACAGTTCACTTAAAGCATTTGGACGGTCGTATTGAAGAGGTTCCTTATTTCTGTCTCCCAGCAAATGATTTGGTTGATGTTATTGCTCCATCTTGCTACAGGTTATTTGTTCTTTTACTGAGTTTAGAGTCACGAGTTTGGTTTCATTTTGATTTCTTAAATGGTCTGTCATTTTATGTTGCACTAATTGGTCAGAATCTCTCTCTCTTTTACAGCTGTTTTGACTATACAAATGGTTTAGCAGACTTGGTCGTTGGATATATGGGCGTGCCAAAATATTCCGGAATCAGCATGACACAACATCCACAATATATTACTGTCAGGAATGAACGTGGAAGAGAGATGATGAGTCTTGTAAAGAACTTACTAGAGATTACTCCAACAGTTAATTCAGGGGATAGGCGACCATTTGTCATGGAGACTGTTAAGGCTGATGATAAAGCTAAATTTGGAAGAGGTCCTCCTCAGCCTGCCCCAAAATTTGTTGGAAACCTGATTGCATTTTTACTAAATTTGGTTGGTCCAAAGGGCATTGAATTTGCACGATACTCGCTTGATTATCATACCATTCGGAACTATTTATACGTAAACCGGATATGGGGAAAGGAAAGGGCTGATAGGCACATGCCTTCATATGCTAAGAAAATTGTGGAAATGTACAACAAAAATGGTGAAATTGAAAAGATGCTCTCAGAGAAGTGA

Protein sequence

>Msa0155030

MSSFSSLPLSLSIRASSSSASQESSISKQDWRKRSKPIPPGGTYPAKDQCSRCGLCDTYYIAHVKNACAFLGDGMSKIEKLEPVVHGRGRKTDTLDETYLGVYEELLYARKLNPVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDPDDRFAPRPVLARTPEEVMAAKGVKPTLSPNLNTLALVEVARIISSIAALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLNAASDSPETVHLKHLDGRIEEVPYFCLPANDLVDVIAPSCYRLFVLLLSLESRVWFHFDFLNGLSFYVALIGQNLSLFYSCFDYTNGLADLVVGYMGVPKYSGISMTQHPQYITVRNERGREMMSLVKNLLEITPTVNSGDRRPFVMETVKADDKAKFGRGPPQPAPKFVGNLIAFLLNLVGPKGIEFARYSLDYHTIRNYLYVNRIWGKERADRHMPSYAKKIVEMYNKNGEIEKMLSEK*