AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0660180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660180 MtrunA17_Chr8g0381971 93.056 288 15 2 1 288 1 283 0.0 529
Msa0660180 MtrunA17_Chr5g0415341 38.489 278 139 8 5 267 6 266 2.70e-53 176
Msa0660180 MtrunA17_Chr4g0058901 29.286 280 157 12 13 267 12 275 5.69e-26 104
Msa0660180 MtrunA17_Chr4g0069121 28.112 249 154 8 31 268 30 264 3.05e-22 94.4
Msa0660180 MtrunA17_Chr4g0075211 27.985 268 147 11 33 274 36 283 1.09e-21 93.6
Msa0660180 MtrunA17_Chr2g0288891 28.000 275 150 13 27 274 16 269 3.00e-19 86.3
Msa0660180 MtrunA17_Chr3g0112391 27.451 255 143 14 39 282 31 254 4.38e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660180 AT1G10380.1 40.964 249 126 6 34 267 28 270 1.62e-45 156
Msa0660180 AT1G10380.2 40.964 249 126 6 34 267 28 270 3.50e-45 155
Msa0660180 AT3G17350.2 29.304 273 162 10 16 270 12 271 4.84e-22 94.0
Msa0660180 AT1G11915.1 29.682 283 152 13 7 260 1 265 9.68e-22 94.0
Msa0660180 AT3G17350.1 29.167 264 157 9 16 262 12 262 1.06e-20 90.5
Msa0660180 AT5G50290.1 28.000 275 161 12 18 267 4 266 1.71e-20 90.1

Find 112 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTACTCATTGGGTTTA+TGG 0.115730 4_3:+70773805 Msa0660180:CDS
TGAAAGTGGATGAAGATATT+TGG 0.257191 4_3:-70773546 None:intergenic
TTGGCACAGGTCCTGGTTGC+GGG 0.266168 4_3:+70773323 Msa0660180:CDS
GTGTATGAAATGGAGGTTAT+AGG 0.283646 4_3:-70773430 None:intergenic
TGCGTCAAAGCTTCCACTTT+TGG 0.298303 4_3:+70774895 Msa0660180:three_prime_UTR
CTCACAACTAGTACATTTAG+TGG 0.331784 4_3:-70773872 None:intergenic
ATCAAAACCAAGATTTCCTT+TGG 0.338876 4_3:+70773992 Msa0660180:CDS
TTTGATGTGCATGTTATGTA+TGG 0.363083 4_3:-70773361 None:intergenic
GTTAAATCAATGCCAAAGTT+TGG 0.363622 4_3:-70773514 None:intergenic
TACATAACATGCACATCAAA+TGG 0.388250 4_3:+70773364 Msa0660180:CDS
CGGGGAACCTAGACGGCAAA+GGG 0.391013 4_3:+70773713 Msa0660180:CDS
TTTGGCACAGGTCCTGGTTG+CGG 0.395015 4_3:+70773322 Msa0660180:CDS
ACACAAACAAATCCACTTCC+TGG 0.398611 4_3:-70773925 None:intergenic
TCAACTCCCCTTTGCCGTCT+AGG 0.402495 4_3:-70773720 None:intergenic
TAGAGTCCCAAAGGAAATCT+TGG 0.407259 4_3:-70773999 None:intergenic
TATCCCTTTGGCACAGGTCC+TGG 0.410285 4_3:+70773316 Msa0660180:CDS
GGCAGTCAGTGCACAAAGCT+CGG 0.415721 4_3:+70774759 Msa0660180:three_prime_UTR
GATCGTAATTAGAGCAATCA+AGG 0.418096 4_3:-70773972 None:intergenic
CCCTACTGATCCTACTCATT+GGG 0.420444 4_3:+70773798 Msa0660180:CDS
GCTCGGGCATACGCAGGGTC+TGG 0.421720 4_3:+70774776 Msa0660180:three_prime_UTR
GTTATGTATGGGTTGAATAG+TGG 0.421768 4_3:-70773349 None:intergenic
GAATGTCTGGAGTTCCATCT+TGG 0.421862 4_3:+70774483 Msa0660180:CDS
TGTATGAAATGGAGGTTATA+GGG 0.425846 4_3:-70773429 None:intergenic
TGTTGTTGAGGCTGTGGGTG+TGG 0.432596 4_3:-70773251 None:intergenic
TATACACAACATGTGTTAGT+AGG 0.444066 4_3:-70773685 None:intergenic
TATGAACAGTTGGGAATGTC+TGG 0.453180 4_3:+70774470 Msa0660180:intron
ACCCTACTGATCCTACTCAT+TGG 0.456155 4_3:+70773797 Msa0660180:CDS
TTTGTTTGTGTTTGTAAAGG+TGG 0.459550 4_3:+70773937 Msa0660180:CDS
AATGGAGGTTATAGGGTATG+AGG 0.466527 4_3:-70773422 None:intergenic
TCAAAACCAAGATTTCCTTT+GGG 0.473584 4_3:+70773993 Msa0660180:CDS
AGATAACAATACACCAAAAG+TGG 0.476574 4_3:-70774908 None:intergenic
TGTTAGTGTTGTTGAGGCTG+TGG 0.477766 4_3:-70773257 None:intergenic
GTCTGGAGTTCCATCTTGGC+TGG 0.482605 4_3:+70774487 Msa0660180:CDS
CACAAAGCTCGGGCATACGC+AGG 0.489024 4_3:+70774770 Msa0660180:three_prime_UTR
ATGCAAACGTCACCAAACTT+TGG 0.492190 4_3:+70773502 Msa0660180:CDS
ATACAAGTCAAGTATCCCTT+TGG 0.494214 4_3:+70773304 Msa0660180:CDS
GCAGTCAGTGCACAAAGCTC+GGG 0.496072 4_3:+70774760 Msa0660180:three_prime_UTR
CCGGGGAACCTAGACGGCAA+AGG 0.496288 4_3:+70773712 Msa0660180:CDS
GTTGTGTACAATACATCAAA+TGG 0.496946 4_3:-70774810 None:intergenic
CACATGTTGTGTATACTCAC+CGG 0.497181 4_3:+70773693 Msa0660180:CDS
ATCAAAAGAAGTGTCACAAA+TGG 0.498238 4_3:-70773599 None:intergenic
CCTTTGCCGTCTAGGTTCCC+CGG 0.498477 4_3:-70773712 None:intergenic
TATTCAACATCAATATGTAA+TGG 0.500190 4_3:-70774966 None:intergenic
GTGGAAAGAGGTGGTAGTAG+TGG 0.501478 4_3:-70773193 None:intergenic
TGTGAGTGTGAGAGTGGAAG+TGG 0.506008 4_3:-70773452 None:intergenic
CTAAGATGAGAATCATGAAA+AGG 0.513752 4_3:-70773225 None:intergenic
GGGTGGTGTGAGTGTGAGAG+TGG 0.515614 4_3:-70773458 None:intergenic
TAATCGGATGATAATGCTGC+TGG 0.516924 4_3:+70774529 Msa0660180:exon
TACACTAGACTAGACTTCAT+AGG 0.517749 4_3:-70774682 None:intergenic
GTTAGTGTTGTTGAGGCTGT+GGG 0.518223 4_3:-70773256 None:intergenic
TATACTTCGGTTGTGTCACT+TGG 0.519729 4_3:+70773769 Msa0660180:CDS
AGTGGAAGTGGTGTATGAAA+TGG 0.521135 4_3:-70773440 None:intergenic
GAAAATGATACCAGCCAAGA+TGG 0.521207 4_3:-70774497 None:intergenic
GGATATGCTCCTCCAGGAAG+TGG 0.522288 4_3:+70773913 Msa0660180:CDS
AATAGTGGGGACCCGCAACC+AGG 0.526866 4_3:-70773334 None:intergenic
AGTAGTGGTGGTAGTGCCAT+TGG 0.534426 4_3:-70773178 None:intergenic
GGATTTGTTTGTGTTTGTAA+AGG 0.540887 4_3:+70773934 Msa0660180:CDS
GCAACCAGGACCTGTGCCAA+AGG 0.541377 4_3:-70773320 None:intergenic
AAGTGGAAGCTTTGACGCAA+AGG 0.544197 4_3:-70774891 None:intergenic
GCAAGAGAGGAGGATGAAAG+TGG 0.545372 4_3:-70773560 None:intergenic
GTCAAGTATCCCTTTGGCAC+AGG 0.545996 4_3:+70773310 Msa0660180:CDS
ACATGTTGTGTATACTCACC+GGG 0.550531 4_3:+70773694 Msa0660180:CDS
ACCCAATGAGTAGGATCAGT+AGG 0.552236 4_3:-70773799 None:intergenic
TGCCCTCAAGTAGTCTCACT+TGG 0.552797 4_3:+70773646 Msa0660180:CDS
GAGAGTAGTGGTGGTGTATG+TGG 0.555000 4_3:+70773892 Msa0660180:CDS
TACTCATTGGGTTTATGGAG+TGG 0.555908 4_3:+70773810 Msa0660180:CDS
CATGAAAAGGTTGATGAGGG+TGG 0.559660 4_3:-70773212 None:intergenic
CAACCAGGACCTGTGCCAAA+GGG 0.563262 4_3:-70773319 None:intergenic
TTGATGTGCATGTTATGTAT+GGG 0.566236 4_3:-70773360 None:intergenic
TAGACTAGACTTCATAGGAA+TGG 0.567381 4_3:-70774677 None:intergenic
TTATGTATGGGTTGAATAGT+GGG 0.567840 4_3:-70773348 None:intergenic
CATTATCATCCGATTACACT+AGG 0.569260 4_3:-70774522 None:intergenic
GGAAGTGGTGTATGAAATGG+AGG 0.572115 4_3:-70773437 None:intergenic
AAAGTTTGGTGACGTTTGCA+TGG 0.574117 4_3:-70773500 None:intergenic
GAAAGAGGTGGTAGTAGTGG+TGG 0.574477 4_3:-70773190 None:intergenic
CCCAATGAGTAGGATCAGTA+GGG 0.577746 4_3:-70773798 None:intergenic
GTATGTGGATATGCTCCTCC+AGG 0.583052 4_3:+70773907 Msa0660180:CDS
GAGGAGAGATAGAGTCCCAA+AGG 0.583741 4_3:-70774008 None:intergenic
TGATTGTAGTGGTTATACTT+CGG 0.584725 4_3:+70773756 Msa0660180:CDS
GGTGGTGCAAGTAGACATGT+AGG 0.584778 4_3:-70773479 None:intergenic
AGGTTGATGAGGGTGGAAAG+AGG 0.585956 4_3:-70773205 None:intergenic
GCACACTGTTAGTGTTGTTG+AGG 0.594642 4_3:-70773263 None:intergenic
TACCAAGTGAGACTACTTGA+GGG 0.596440 4_3:-70773648 None:intergenic
ATACCAAGTGAGACTACTTG+AGG 0.598463 4_3:-70773649 None:intergenic
GGCATACGCAGGGTCTGGAA+AGG 0.609211 4_3:+70774781 Msa0660180:three_prime_UTR
CTTAGAGAGAATGATTGTAG+TGG 0.610496 4_3:+70773745 Msa0660180:CDS
GTGGATGAAGATATTTGGAA+TGG 0.613981 4_3:-70773541 None:intergenic
TACTCACCGGGGAACCTAGA+CGG 0.615280 4_3:+70773706 Msa0660180:CDS
AACATACTGTTGTACATGGG+AGG 0.621855 4_3:-70774030 None:intergenic
ACTCCATAAACCCAATGAGT+AGG 0.626290 4_3:-70773808 None:intergenic
ACAAAGCTCGGGCATACGCA+GGG 0.627608 4_3:+70774771 Msa0660180:three_prime_UTR
GAATCATGAAAAGGTTGATG+AGG 0.631423 4_3:-70773216 None:intergenic
CTAACAGTTAAGTCATTCAG+AGG 0.631884 4_3:+70774570 Msa0660180:three_prime_UTR
TTGATGAGGGTGGAAAGAGG+TGG 0.635922 4_3:-70773202 None:intergenic
ATACTGTTGTACATGGGAGG+AGG 0.638228 4_3:-70774027 None:intergenic
AATCATGAAAAGGTTGATGA+GGG 0.650509 4_3:-70773215 None:intergenic
AAGAGTAAAGAGAAGCACAA+AGG 0.652408 4_3:-70773624 None:intergenic
TGGAACACAAGCAAAGCCAA+TGG 0.663304 4_3:+70773162 Msa0660180:exon
GTTTGGTGACGTTTGCATGG+TGG 0.670403 4_3:-70773497 None:intergenic
GTGGCATTGAAATATACTCA+TGG 0.674830 4_3:+70773829 Msa0660180:CDS
GTATTGAGCCACATGTGTCA+TGG 0.676021 4_3:-70773285 None:intergenic
AATCGGATGATAATGCTGCT+GGG 0.679814 4_3:+70774530 Msa0660180:exon
ACAGTTAAGTCATTCAGAGG+AGG 0.686509 4_3:+70774573 Msa0660180:three_prime_UTR
GGGGAACCTAGACGGCAAAG+GGG 0.692978 4_3:+70773714 Msa0660180:CDS
GTGGTGCAAGTAGACATGTA+GGG 0.696710 4_3:-70773478 None:intergenic
ACTAGTTGTGAGAGTAGTGG+TGG 0.700797 4_3:+70773883 Msa0660180:CDS
TGTACTAGTTGTGAGAGTAG+TGG 0.707622 4_3:+70773880 Msa0660180:CDS
TATGTATGGGTTGAATAGTG+GGG 0.729462 4_3:-70773347 None:intergenic
GTGCAAGTAGACATGTAGGG+TGG 0.743146 4_3:-70773475 None:intergenic
CATGTTGTGTATACTCACCG+GGG 0.745636 4_3:+70773695 Msa0660180:CDS
ACAGTGTGCCATGACACATG+TGG 0.759996 4_3:+70773277 Msa0660180:CDS
CAAACAAATCCACTTCCTGG+AGG 0.785898 4_3:-70773922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATAAGTAAGTAATT+AGG + chr4_3:70774163-70774182 Msa0660180:intron 10.0%
!! TATATATAAGTAAGTAATTA+GGG + chr4_3:70774164-70774183 Msa0660180:intron 10.0%
!! TTATATATAAGTAAGTAATT+AGG + chr4_3:70774163-70774182 Msa0660180:intron 10.0%
!! TATATATAAGTAAGTAATTA+GGG + chr4_3:70774164-70774183 Msa0660180:intron 10.0%
!! ATATATAAGTAAGTAATTAG+GGG + chr4_3:70774165-70774184 Msa0660180:intron 15.0%
!! TGTATTGTCAAAAAAATAAA+AGG + chr4_3:70774737-70774756 Msa0660180:three_prime_UTR 15.0%
!! GTATTGTCAAAAAAATAAAA+GGG + chr4_3:70774738-70774757 Msa0660180:three_prime_UTR 15.0%
!! TAACAAAAAAAACTATCTTT+AGG + chr4_3:70774987-70775006 Msa0660180:three_prime_UTR 15.0%
!! ATATATAAGTAAGTAATTAG+GGG + chr4_3:70774165-70774184 Msa0660180:intron 15.0%
!! TGTATTGTCAAAAAAATAAA+AGG + chr4_3:70774737-70774756 Msa0660180:three_prime_UTR 15.0%
!! GTATTGTCAAAAAAATAAAA+GGG + chr4_3:70774738-70774757 Msa0660180:three_prime_UTR 15.0%
!!! GTCTTTTTTAATTTTCATAC+AGG + chr4_3:70774131-70774150 Msa0660180:intron 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG + chr4_3:70774636-70774655 Msa0660180:three_prime_UTR 20.0%
!!! TTTTTTTTTTTGTACAAGTC+TGG + chr4_3:70774714-70774733 Msa0660180:three_prime_UTR 20.0%
!! TCTGTAAAAAAAAAATTGCA+TGG + chr4_3:70774930-70774949 Msa0660180:three_prime_UTR 20.0%
!! TATTCAACATCAATATGTAA+TGG - chr4_3:70774969-70774988 None:intergenic 20.0%
!!! GTCTTTTTTAATTTTCATAC+AGG + chr4_3:70774131-70774150 Msa0660180:intron 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG + chr4_3:70774636-70774655 Msa0660180:three_prime_UTR 20.0%
!!! TTTTTTTTTTTGTACAAGTC+TGG + chr4_3:70774714-70774733 Msa0660180:three_prime_UTR 20.0%
!! TCTGTAAAAAAAAAATTGCA+TGG + chr4_3:70774930-70774949 Msa0660180:three_prime_UTR 20.0%
!! TATTCAACATCAATATGTAA+TGG - chr4_3:70774969-70774988 None:intergenic 20.0%
! AAAAACATACTGTTGTACAT+GGG - chr4_3:70774036-70774055 None:intergenic 25.0%
! AAAGAAACAACAAAAAGAGA+AGG - chr4_3:70774059-70774078 None:intergenic 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG + chr4_3:70774244-70774263 Msa0660180:intron 25.0%
! CAAGAAAAAGGAAAAATAGA+TGG + chr4_3:70774256-70774275 Msa0660180:intron 25.0%
! AAAAAGGAAAAATAGATGGT+TGG + chr4_3:70774260-70774279 Msa0660180:intron 25.0%
! AAAACAATATGCCAAAGTAA+TGG + chr4_3:70774325-70774344 Msa0660180:intron 25.0%
! AAACAATATGCCAAAGTAAT+GGG + chr4_3:70774326-70774345 Msa0660180:intron 25.0%
! ATAATAGTTACCCATTACTT+TGG - chr4_3:70774339-70774358 None:intergenic 25.0%
! TATTATTCTGTACACTTGAA+AGG + chr4_3:70774353-70774372 Msa0660180:intron 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG + chr4_3:70774399-70774418 Msa0660180:intron 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG - chr4_3:70774609-70774628 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG - chr4_3:70774632-70774651 None:intergenic 25.0%
! AAAAACATACTGTTGTACAT+GGG - chr4_3:70774036-70774055 None:intergenic 25.0%
! AAAGAAACAACAAAAAGAGA+AGG - chr4_3:70774059-70774078 None:intergenic 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG + chr4_3:70774244-70774263 Msa0660180:intron 25.0%
! CAAGAAAAAGGAAAAATAGA+TGG + chr4_3:70774256-70774275 Msa0660180:intron 25.0%
! AAAAAGGAAAAATAGATGGT+TGG + chr4_3:70774260-70774279 Msa0660180:intron 25.0%
! AAAACAATATGCCAAAGTAA+TGG + chr4_3:70774325-70774344 Msa0660180:intron 25.0%
! AAACAATATGCCAAAGTAAT+GGG + chr4_3:70774326-70774345 Msa0660180:intron 25.0%
! ATAATAGTTACCCATTACTT+TGG - chr4_3:70774339-70774358 None:intergenic 25.0%
! TATTATTCTGTACACTTGAA+AGG + chr4_3:70774353-70774372 Msa0660180:intron 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG + chr4_3:70774399-70774418 Msa0660180:intron 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG - chr4_3:70774609-70774628 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG - chr4_3:70774632-70774651 None:intergenic 25.0%
!! AATCATGAAAAGGTTGATGA+GGG - chr4_3:70773218-70773237 None:intergenic 30.0%
CTAAGATGAGAATCATGAAA+AGG - chr4_3:70773228-70773247 None:intergenic 30.0%
! TTATGTATGGGTTGAATAGT+GGG - chr4_3:70773351-70773370 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG - chr4_3:70773363-70773382 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG - chr4_3:70773364-70773383 None:intergenic 30.0%
TACATAACATGCACATCAAA+TGG + chr4_3:70773364-70773383 Msa0660180:CDS 30.0%
TGTATGAAATGGAGGTTATA+GGG - chr4_3:70773432-70773451 None:intergenic 30.0%
GTTAAATCAATGCCAAAGTT+TGG - chr4_3:70773517-70773536 None:intergenic 30.0%
TGAAAGTGGATGAAGATATT+TGG - chr4_3:70773549-70773568 None:intergenic 30.0%
! AAATGGTTGAACTCTTTTCT+TGG - chr4_3:70773585-70773604 None:intergenic 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG - chr4_3:70773602-70773621 None:intergenic 30.0%
TATACACAACATGTGTTAGT+AGG - chr4_3:70773688-70773707 None:intergenic 30.0%
TGATTGTAGTGGTTATACTT+CGG + chr4_3:70773756-70773775 Msa0660180:CDS 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG + chr4_3:70773934-70773953 Msa0660180:CDS 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG + chr4_3:70773937-70773956 Msa0660180:CDS 30.0%
ATCAAAACCAAGATTTCCTT+TGG + chr4_3:70773992-70774011 Msa0660180:CDS 30.0%
TCAAAACCAAGATTTCCTTT+GGG + chr4_3:70773993-70774012 Msa0660180:CDS 30.0%
GAAAAACATACTGTTGTACA+TGG - chr4_3:70774037-70774056 None:intergenic 30.0%
! TTTACATTCCCCATAGTTTT+CGG + chr4_3:70774108-70774127 Msa0660180:intron 30.0%
AAAAAAGACCCGAAAACTAT+GGG - chr4_3:70774120-70774139 None:intergenic 30.0%
TAAAAAAGACCCGAAAACTA+TGG - chr4_3:70774121-70774140 None:intergenic 30.0%
GAAATGAGTCAAATGACTAT+TGG + chr4_3:70774187-70774206 Msa0660180:intron 30.0%
GTTGTGTACAATACATCAAA+TGG - chr4_3:70774813-70774832 None:intergenic 30.0%
!!! CACAACTTTACCTTGTTTTT+AGG + chr4_3:70774827-70774846 Msa0660180:three_prime_UTR 30.0%
AGATAACAATACACCAAAAG+TGG - chr4_3:70774911-70774930 None:intergenic 30.0%
!! AATCATGAAAAGGTTGATGA+GGG - chr4_3:70773218-70773237 None:intergenic 30.0%
CTAAGATGAGAATCATGAAA+AGG - chr4_3:70773228-70773247 None:intergenic 30.0%
! TTATGTATGGGTTGAATAGT+GGG - chr4_3:70773351-70773370 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG - chr4_3:70773363-70773382 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG - chr4_3:70773364-70773383 None:intergenic 30.0%
TACATAACATGCACATCAAA+TGG + chr4_3:70773364-70773383 Msa0660180:CDS 30.0%
TGTATGAAATGGAGGTTATA+GGG - chr4_3:70773432-70773451 None:intergenic 30.0%
GTTAAATCAATGCCAAAGTT+TGG - chr4_3:70773517-70773536 None:intergenic 30.0%
TGAAAGTGGATGAAGATATT+TGG - chr4_3:70773549-70773568 None:intergenic 30.0%
! AAATGGTTGAACTCTTTTCT+TGG - chr4_3:70773585-70773604 None:intergenic 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG - chr4_3:70773602-70773621 None:intergenic 30.0%
TATACACAACATGTGTTAGT+AGG - chr4_3:70773688-70773707 None:intergenic 30.0%
TGATTGTAGTGGTTATACTT+CGG + chr4_3:70773756-70773775 Msa0660180:CDS 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG + chr4_3:70773934-70773953 Msa0660180:CDS 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG + chr4_3:70773937-70773956 Msa0660180:CDS 30.0%
ATCAAAACCAAGATTTCCTT+TGG + chr4_3:70773992-70774011 Msa0660180:CDS 30.0%
TCAAAACCAAGATTTCCTTT+GGG + chr4_3:70773993-70774012 Msa0660180:CDS 30.0%
GAAAAACATACTGTTGTACA+TGG - chr4_3:70774037-70774056 None:intergenic 30.0%
! TTTACATTCCCCATAGTTTT+CGG + chr4_3:70774108-70774127 Msa0660180:intron 30.0%
AAAAAAGACCCGAAAACTAT+GGG - chr4_3:70774120-70774139 None:intergenic 30.0%
TAAAAAAGACCCGAAAACTA+TGG - chr4_3:70774121-70774140 None:intergenic 30.0%
GAAATGAGTCAAATGACTAT+TGG + chr4_3:70774187-70774206 Msa0660180:intron 30.0%
GTTGTGTACAATACATCAAA+TGG - chr4_3:70774813-70774832 None:intergenic 30.0%
!!! CACAACTTTACCTTGTTTTT+AGG + chr4_3:70774827-70774846 Msa0660180:three_prime_UTR 30.0%
AGATAACAATACACCAAAAG+TGG - chr4_3:70774911-70774930 None:intergenic 30.0%
!! GAATCATGAAAAGGTTGATG+AGG - chr4_3:70773219-70773238 None:intergenic 35.0%
ATACAAGTCAAGTATCCCTT+TGG + chr4_3:70773304-70773323 Msa0660180:CDS 35.0%
! TATGTATGGGTTGAATAGTG+GGG - chr4_3:70773350-70773369 None:intergenic 35.0%
! GTTATGTATGGGTTGAATAG+TGG - chr4_3:70773352-70773371 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG - chr4_3:70773433-70773452 None:intergenic 35.0%
GTGGATGAAGATATTTGGAA+TGG - chr4_3:70773544-70773563 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG - chr4_3:70773627-70773646 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG - chr4_3:70773676-70773695 None:intergenic 35.0%
CTTAGAGAGAATGATTGTAG+TGG + chr4_3:70773745-70773764 Msa0660180:CDS 35.0%
! GTGGCATTGAAATATACTCA+TGG + chr4_3:70773829-70773848 Msa0660180:CDS 35.0%
CTCACAACTAGTACATTTAG+TGG - chr4_3:70773875-70773894 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG - chr4_3:70773975-70773994 None:intergenic 35.0%
! TTACATTCCCCATAGTTTTC+GGG + chr4_3:70774109-70774128 Msa0660180:intron 35.0%
AAAAAGACCCGAAAACTATG+GGG - chr4_3:70774119-70774138 None:intergenic 35.0%
AAAAATAGATGGTTGGACGA+TGG + chr4_3:70774267-70774286 Msa0660180:intron 35.0%
CTGTTCTGTTATGAACAGTT+GGG + chr4_3:70774461-70774480 Msa0660180:intron 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG + chr4_3:70774513-70774532 Msa0660180:exon 35.0%
CATTATCATCCGATTACACT+AGG - chr4_3:70774525-70774544 None:intergenic 35.0%
CTAACAGTTAAGTCATTCAG+AGG + chr4_3:70774570-70774589 Msa0660180:three_prime_UTR 35.0%
TAGACTAGACTTCATAGGAA+TGG - chr4_3:70774680-70774699 None:intergenic 35.0%
TACACTAGACTAGACTTCAT+AGG - chr4_3:70774685-70774704 None:intergenic 35.0%
CAGTCTCTTACCTAAAAACA+AGG - chr4_3:70774840-70774859 None:intergenic 35.0%
!! GAATCATGAAAAGGTTGATG+AGG - chr4_3:70773219-70773238 None:intergenic 35.0%
ATACAAGTCAAGTATCCCTT+TGG + chr4_3:70773304-70773323 Msa0660180:CDS 35.0%
! TATGTATGGGTTGAATAGTG+GGG - chr4_3:70773350-70773369 None:intergenic 35.0%
! GTTATGTATGGGTTGAATAG+TGG - chr4_3:70773352-70773371 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG - chr4_3:70773433-70773452 None:intergenic 35.0%
GTGGATGAAGATATTTGGAA+TGG - chr4_3:70773544-70773563 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG - chr4_3:70773627-70773646 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG - chr4_3:70773676-70773695 None:intergenic 35.0%
CTTAGAGAGAATGATTGTAG+TGG + chr4_3:70773745-70773764 Msa0660180:CDS 35.0%
! GTGGCATTGAAATATACTCA+TGG + chr4_3:70773829-70773848 Msa0660180:CDS 35.0%
CTCACAACTAGTACATTTAG+TGG - chr4_3:70773875-70773894 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG - chr4_3:70773975-70773994 None:intergenic 35.0%
! TTACATTCCCCATAGTTTTC+GGG + chr4_3:70774109-70774128 Msa0660180:intron 35.0%
AAAAAGACCCGAAAACTATG+GGG - chr4_3:70774119-70774138 None:intergenic 35.0%
AAAAATAGATGGTTGGACGA+TGG + chr4_3:70774267-70774286 Msa0660180:intron 35.0%
CTGTTCTGTTATGAACAGTT+GGG + chr4_3:70774461-70774480 Msa0660180:intron 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG + chr4_3:70774513-70774532 Msa0660180:exon 35.0%
CATTATCATCCGATTACACT+AGG - chr4_3:70774525-70774544 None:intergenic 35.0%
CTAACAGTTAAGTCATTCAG+AGG + chr4_3:70774570-70774589 Msa0660180:three_prime_UTR 35.0%
TAGACTAGACTTCATAGGAA+TGG - chr4_3:70774680-70774699 None:intergenic 35.0%
TACACTAGACTAGACTTCAT+AGG - chr4_3:70774685-70774704 None:intergenic 35.0%
CAGTCTCTTACCTAAAAACA+AGG - chr4_3:70774840-70774859 None:intergenic 35.0%
!!! TGTGAGTTTTGAGGATGAGT+TGG - chr4_3:70773399-70773418 None:intergenic 40.0%
! ATGAGGATGTGTGAGTTTTG+AGG - chr4_3:70773408-70773427 None:intergenic 40.0%
AATGGAGGTTATAGGGTATG+AGG - chr4_3:70773425-70773444 None:intergenic 40.0%
AGTGGAAGTGGTGTATGAAA+TGG - chr4_3:70773443-70773462 None:intergenic 40.0%
!! AAAGTTTGGTGACGTTTGCA+TGG - chr4_3:70773503-70773522 None:intergenic 40.0%
ATGCAAACGTCACCAAACTT+TGG + chr4_3:70773502-70773521 Msa0660180:CDS 40.0%
! AACTCTTTTCTTGGCAAGAG+AGG - chr4_3:70773576-70773595 None:intergenic 40.0%
TACCAAGTGAGACTACTTGA+GGG - chr4_3:70773651-70773670 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG - chr4_3:70773652-70773671 None:intergenic 40.0%
CACATGTTGTGTATACTCAC+CGG + chr4_3:70773693-70773712 Msa0660180:CDS 40.0%
ACATGTTGTGTATACTCACC+GGG + chr4_3:70773694-70773713 Msa0660180:CDS 40.0%
! TATACTTCGGTTGTGTCACT+TGG + chr4_3:70773769-70773788 Msa0660180:CDS 40.0%
GATCCTACTCATTGGGTTTA+TGG + chr4_3:70773805-70773824 Msa0660180:CDS 40.0%
ACTCCATAAACCCAATGAGT+AGG - chr4_3:70773811-70773830 None:intergenic 40.0%
TACTCATTGGGTTTATGGAG+TGG + chr4_3:70773810-70773829 Msa0660180:CDS 40.0%
TGTACTAGTTGTGAGAGTAG+TGG + chr4_3:70773880-70773899 Msa0660180:CDS 40.0%
ACACAAACAAATCCACTTCC+TGG - chr4_3:70773928-70773947 None:intergenic 40.0%
TAGAGTCCCAAAGGAAATCT+TGG - chr4_3:70774002-70774021 None:intergenic 40.0%
AACATACTGTTGTACATGGG+AGG - chr4_3:70774033-70774052 None:intergenic 40.0%
CCAACTGTTCATAACAGAAC+AGG - chr4_3:70774463-70774482 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG + chr4_3:70774460-70774479 Msa0660180:intron 40.0%
TATGAACAGTTGGGAATGTC+TGG + chr4_3:70774470-70774489 Msa0660180:intron 40.0%
GAAAATGATACCAGCCAAGA+TGG - chr4_3:70774500-70774519 None:intergenic 40.0%
! TAATCGGATGATAATGCTGC+TGG + chr4_3:70774529-70774548 Msa0660180:exon 40.0%
! AATCGGATGATAATGCTGCT+GGG + chr4_3:70774530-70774549 Msa0660180:exon 40.0%
ACAGTTAAGTCATTCAGAGG+AGG + chr4_3:70774573-70774592 Msa0660180:three_prime_UTR 40.0%
!!! TGTGAGTTTTGAGGATGAGT+TGG - chr4_3:70773399-70773418 None:intergenic 40.0%
! ATGAGGATGTGTGAGTTTTG+AGG - chr4_3:70773408-70773427 None:intergenic 40.0%
AATGGAGGTTATAGGGTATG+AGG - chr4_3:70773425-70773444 None:intergenic 40.0%
AGTGGAAGTGGTGTATGAAA+TGG - chr4_3:70773443-70773462 None:intergenic 40.0%
!! AAAGTTTGGTGACGTTTGCA+TGG - chr4_3:70773503-70773522 None:intergenic 40.0%
ATGCAAACGTCACCAAACTT+TGG + chr4_3:70773502-70773521 Msa0660180:CDS 40.0%
! AACTCTTTTCTTGGCAAGAG+AGG - chr4_3:70773576-70773595 None:intergenic 40.0%
TACCAAGTGAGACTACTTGA+GGG - chr4_3:70773651-70773670 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG - chr4_3:70773652-70773671 None:intergenic 40.0%
CACATGTTGTGTATACTCAC+CGG + chr4_3:70773693-70773712 Msa0660180:CDS 40.0%
ACATGTTGTGTATACTCACC+GGG + chr4_3:70773694-70773713 Msa0660180:CDS 40.0%
! TATACTTCGGTTGTGTCACT+TGG + chr4_3:70773769-70773788 Msa0660180:CDS 40.0%
GATCCTACTCATTGGGTTTA+TGG + chr4_3:70773805-70773824 Msa0660180:CDS 40.0%
ACTCCATAAACCCAATGAGT+AGG - chr4_3:70773811-70773830 None:intergenic 40.0%
TACTCATTGGGTTTATGGAG+TGG + chr4_3:70773810-70773829 Msa0660180:CDS 40.0%
TGTACTAGTTGTGAGAGTAG+TGG + chr4_3:70773880-70773899 Msa0660180:CDS 40.0%
ACACAAACAAATCCACTTCC+TGG - chr4_3:70773928-70773947 None:intergenic 40.0%
TAGAGTCCCAAAGGAAATCT+TGG - chr4_3:70774002-70774021 None:intergenic 40.0%
AACATACTGTTGTACATGGG+AGG - chr4_3:70774033-70774052 None:intergenic 40.0%
CCAACTGTTCATAACAGAAC+AGG - chr4_3:70774463-70774482 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG + chr4_3:70774460-70774479 Msa0660180:intron 40.0%
TATGAACAGTTGGGAATGTC+TGG + chr4_3:70774470-70774489 Msa0660180:intron 40.0%
GAAAATGATACCAGCCAAGA+TGG - chr4_3:70774500-70774519 None:intergenic 40.0%
! TAATCGGATGATAATGCTGC+TGG + chr4_3:70774529-70774548 Msa0660180:exon 40.0%
! AATCGGATGATAATGCTGCT+GGG + chr4_3:70774530-70774549 Msa0660180:exon 40.0%
ACAGTTAAGTCATTCAGAGG+AGG + chr4_3:70774573-70774592 Msa0660180:three_prime_UTR 40.0%
TGGAACACAAGCAAAGCCAA+TGG + chr4_3:70773162-70773181 Msa0660180:exon 45.0%
!! CATGAAAAGGTTGATGAGGG+TGG - chr4_3:70773215-70773234 None:intergenic 45.0%
! GTTAGTGTTGTTGAGGCTGT+GGG - chr4_3:70773259-70773278 None:intergenic 45.0%
! TGTTAGTGTTGTTGAGGCTG+TGG - chr4_3:70773260-70773279 None:intergenic 45.0%
! GCACACTGTTAGTGTTGTTG+AGG - chr4_3:70773266-70773285 None:intergenic 45.0%
GTATTGAGCCACATGTGTCA+TGG - chr4_3:70773288-70773307 None:intergenic 45.0%
GGAAGTGGTGTATGAAATGG+AGG - chr4_3:70773440-70773459 None:intergenic 45.0%
GTGGTGCAAGTAGACATGTA+GGG - chr4_3:70773481-70773500 None:intergenic 45.0%
! TCTTTTCTTGGCAAGAGAGG+AGG - chr4_3:70773573-70773592 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG + chr4_3:70773695-70773714 Msa0660180:CDS 45.0%
ACCCTACTGATCCTACTCAT+TGG + chr4_3:70773797-70773816 Msa0660180:CDS 45.0%
CCCAATGAGTAGGATCAGTA+GGG - chr4_3:70773801-70773820 None:intergenic 45.0%
CCCTACTGATCCTACTCATT+GGG + chr4_3:70773798-70773817 Msa0660180:CDS 45.0%
ACCCAATGAGTAGGATCAGT+AGG - chr4_3:70773802-70773821 None:intergenic 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG + chr4_3:70773883-70773902 Msa0660180:CDS 45.0%
CAAACAAATCCACTTCCTGG+AGG - chr4_3:70773925-70773944 None:intergenic 45.0%
ATACTGTTGTACATGGGAGG+AGG - chr4_3:70774030-70774049 None:intergenic 45.0%
! GAATGTCTGGAGTTCCATCT+TGG + chr4_3:70774483-70774502 Msa0660180:CDS 45.0%
! AAGTGGAAGCTTTGACGCAA+AGG - chr4_3:70774894-70774913 None:intergenic 45.0%
! TGCGTCAAAGCTTCCACTTT+TGG + chr4_3:70774895-70774914 Msa0660180:three_prime_UTR 45.0%
TGGAACACAAGCAAAGCCAA+TGG + chr4_3:70773162-70773181 Msa0660180:exon 45.0%
!! CATGAAAAGGTTGATGAGGG+TGG - chr4_3:70773215-70773234 None:intergenic 45.0%
! GTTAGTGTTGTTGAGGCTGT+GGG - chr4_3:70773259-70773278 None:intergenic 45.0%
! TGTTAGTGTTGTTGAGGCTG+TGG - chr4_3:70773260-70773279 None:intergenic 45.0%
! GCACACTGTTAGTGTTGTTG+AGG - chr4_3:70773266-70773285 None:intergenic 45.0%
GTATTGAGCCACATGTGTCA+TGG - chr4_3:70773288-70773307 None:intergenic 45.0%
GGAAGTGGTGTATGAAATGG+AGG - chr4_3:70773440-70773459 None:intergenic 45.0%
GTGGTGCAAGTAGACATGTA+GGG - chr4_3:70773481-70773500 None:intergenic 45.0%
! TCTTTTCTTGGCAAGAGAGG+AGG - chr4_3:70773573-70773592 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG + chr4_3:70773695-70773714 Msa0660180:CDS 45.0%
ACCCTACTGATCCTACTCAT+TGG + chr4_3:70773797-70773816 Msa0660180:CDS 45.0%
CCCAATGAGTAGGATCAGTA+GGG - chr4_3:70773801-70773820 None:intergenic 45.0%
CCCTACTGATCCTACTCATT+GGG + chr4_3:70773798-70773817 Msa0660180:CDS 45.0%
ACCCAATGAGTAGGATCAGT+AGG - chr4_3:70773802-70773821 None:intergenic 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG + chr4_3:70773883-70773902 Msa0660180:CDS 45.0%
CAAACAAATCCACTTCCTGG+AGG - chr4_3:70773925-70773944 None:intergenic 45.0%
ATACTGTTGTACATGGGAGG+AGG - chr4_3:70774030-70774049 None:intergenic 45.0%
! GAATGTCTGGAGTTCCATCT+TGG + chr4_3:70774483-70774502 Msa0660180:CDS 45.0%
! AAGTGGAAGCTTTGACGCAA+AGG - chr4_3:70774894-70774913 None:intergenic 45.0%
! TGCGTCAAAGCTTCCACTTT+TGG + chr4_3:70774895-70774914 Msa0660180:three_prime_UTR 45.0%
! AGTAGTGGTGGTAGTGCCAT+TGG - chr4_3:70773181-70773200 None:intergenic 50.0%
GAAAGAGGTGGTAGTAGTGG+TGG - chr4_3:70773193-70773212 None:intergenic 50.0%
GTGGAAAGAGGTGGTAGTAG+TGG - chr4_3:70773196-70773215 None:intergenic 50.0%
TTGATGAGGGTGGAAAGAGG+TGG - chr4_3:70773205-70773224 None:intergenic 50.0%
!! AGGTTGATGAGGGTGGAAAG+AGG - chr4_3:70773208-70773227 None:intergenic 50.0%
ACAGTGTGCCATGACACATG+TGG + chr4_3:70773277-70773296 Msa0660180:CDS 50.0%
GTCAAGTATCCCTTTGGCAC+AGG + chr4_3:70773310-70773329 Msa0660180:CDS 50.0%
TGTGAGTGTGAGAGTGGAAG+TGG - chr4_3:70773455-70773474 None:intergenic 50.0%
GTGCAAGTAGACATGTAGGG+TGG - chr4_3:70773478-70773497 None:intergenic 50.0%
GGTGGTGCAAGTAGACATGT+AGG - chr4_3:70773482-70773501 None:intergenic 50.0%
!! GTTTGGTGACGTTTGCATGG+TGG - chr4_3:70773500-70773519 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG - chr4_3:70773563-70773582 None:intergenic 50.0%
TGCCCTCAAGTAGTCTCACT+TGG + chr4_3:70773646-70773665 Msa0660180:CDS 50.0%
! GAGAGTAGTGGTGGTGTATG+TGG + chr4_3:70773892-70773911 Msa0660180:CDS 50.0%
GTATGTGGATATGCTCCTCC+AGG + chr4_3:70773907-70773926 Msa0660180:CDS 50.0%
GAGGAGAGATAGAGTCCCAA+AGG - chr4_3:70774011-70774030 None:intergenic 50.0%
! AGTAGTGGTGGTAGTGCCAT+TGG - chr4_3:70773181-70773200 None:intergenic 50.0%
GAAAGAGGTGGTAGTAGTGG+TGG - chr4_3:70773193-70773212 None:intergenic 50.0%
GTGGAAAGAGGTGGTAGTAG+TGG - chr4_3:70773196-70773215 None:intergenic 50.0%
TTGATGAGGGTGGAAAGAGG+TGG - chr4_3:70773205-70773224 None:intergenic 50.0%
!! AGGTTGATGAGGGTGGAAAG+AGG - chr4_3:70773208-70773227 None:intergenic 50.0%
ACAGTGTGCCATGACACATG+TGG + chr4_3:70773277-70773296 Msa0660180:CDS 50.0%
GTCAAGTATCCCTTTGGCAC+AGG + chr4_3:70773310-70773329 Msa0660180:CDS 50.0%
TGTGAGTGTGAGAGTGGAAG+TGG - chr4_3:70773455-70773474 None:intergenic 50.0%
GTGCAAGTAGACATGTAGGG+TGG - chr4_3:70773478-70773497 None:intergenic 50.0%
GGTGGTGCAAGTAGACATGT+AGG - chr4_3:70773482-70773501 None:intergenic 50.0%
!! GTTTGGTGACGTTTGCATGG+TGG - chr4_3:70773500-70773519 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG - chr4_3:70773563-70773582 None:intergenic 50.0%
TGCCCTCAAGTAGTCTCACT+TGG + chr4_3:70773646-70773665 Msa0660180:CDS 50.0%
! GAGAGTAGTGGTGGTGTATG+TGG + chr4_3:70773892-70773911 Msa0660180:CDS 50.0%
GTATGTGGATATGCTCCTCC+AGG + chr4_3:70773907-70773926 Msa0660180:CDS 50.0%
GAGGAGAGATAGAGTCCCAA+AGG - chr4_3:70774011-70774030 None:intergenic 50.0%
TGTTGTTGAGGCTGTGGGTG+TGG - chr4_3:70773254-70773273 None:intergenic 55.0%
TATCCCTTTGGCACAGGTCC+TGG + chr4_3:70773316-70773335 Msa0660180:CDS 55.0%
CAACCAGGACCTGTGCCAAA+GGG - chr4_3:70773322-70773341 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG + chr4_3:70773322-70773341 Msa0660180:CDS 55.0%
TACTCACCGGGGAACCTAGA+CGG + chr4_3:70773706-70773725 Msa0660180:CDS 55.0%
TCAACTCCCCTTTGCCGTCT+AGG - chr4_3:70773723-70773742 None:intergenic 55.0%
GGATATGCTCCTCCAGGAAG+TGG + chr4_3:70773913-70773932 Msa0660180:CDS 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG + chr4_3:70774487-70774506 Msa0660180:CDS 55.0%
GGCAGTCAGTGCACAAAGCT+CGG + chr4_3:70774759-70774778 Msa0660180:three_prime_UTR 55.0%
GCAGTCAGTGCACAAAGCTC+GGG + chr4_3:70774760-70774779 Msa0660180:three_prime_UTR 55.0%
ACAAAGCTCGGGCATACGCA+GGG + chr4_3:70774771-70774790 Msa0660180:three_prime_UTR 55.0%
TGTTGTTGAGGCTGTGGGTG+TGG - chr4_3:70773254-70773273 None:intergenic 55.0%
TATCCCTTTGGCACAGGTCC+TGG + chr4_3:70773316-70773335 Msa0660180:CDS 55.0%
CAACCAGGACCTGTGCCAAA+GGG - chr4_3:70773322-70773341 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG + chr4_3:70773322-70773341 Msa0660180:CDS 55.0%
TACTCACCGGGGAACCTAGA+CGG + chr4_3:70773706-70773725 Msa0660180:CDS 55.0%
TCAACTCCCCTTTGCCGTCT+AGG - chr4_3:70773723-70773742 None:intergenic 55.0%
GGATATGCTCCTCCAGGAAG+TGG + chr4_3:70773913-70773932 Msa0660180:CDS 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG + chr4_3:70774487-70774506 Msa0660180:CDS 55.0%
GGCAGTCAGTGCACAAAGCT+CGG + chr4_3:70774759-70774778 Msa0660180:three_prime_UTR 55.0%
GCAGTCAGTGCACAAAGCTC+GGG + chr4_3:70774760-70774779 Msa0660180:three_prime_UTR 55.0%
ACAAAGCTCGGGCATACGCA+GGG + chr4_3:70774771-70774790 Msa0660180:three_prime_UTR 55.0%
GCAACCAGGACCTGTGCCAA+AGG - chr4_3:70773323-70773342 None:intergenic 60.0%
TTGGCACAGGTCCTGGTTGC+GGG + chr4_3:70773323-70773342 Msa0660180:CDS 60.0%
! AATAGTGGGGACCCGCAACC+AGG - chr4_3:70773337-70773356 None:intergenic 60.0%
GGGTGGTGTGAGTGTGAGAG+TGG - chr4_3:70773461-70773480 None:intergenic 60.0%
CCTTTGCCGTCTAGGTTCCC+CGG - chr4_3:70773715-70773734 None:intergenic 60.0%
CGGGGAACCTAGACGGCAAA+GGG + chr4_3:70773713-70773732 Msa0660180:CDS 60.0%
GGGGAACCTAGACGGCAAAG+GGG + chr4_3:70773714-70773733 Msa0660180:CDS 60.0%
CACAAAGCTCGGGCATACGC+AGG + chr4_3:70774770-70774789 Msa0660180:three_prime_UTR 60.0%
GGCATACGCAGGGTCTGGAA+AGG + chr4_3:70774781-70774800 Msa0660180:three_prime_UTR 60.0%
GCAACCAGGACCTGTGCCAA+AGG - chr4_3:70773323-70773342 None:intergenic 60.0%
TTGGCACAGGTCCTGGTTGC+GGG + chr4_3:70773323-70773342 Msa0660180:CDS 60.0%
! AATAGTGGGGACCCGCAACC+AGG - chr4_3:70773337-70773356 None:intergenic 60.0%
GGGTGGTGTGAGTGTGAGAG+TGG - chr4_3:70773461-70773480 None:intergenic 60.0%
CCTTTGCCGTCTAGGTTCCC+CGG - chr4_3:70773715-70773734 None:intergenic 60.0%
CGGGGAACCTAGACGGCAAA+GGG + chr4_3:70773713-70773732 Msa0660180:CDS 60.0%
GGGGAACCTAGACGGCAAAG+GGG + chr4_3:70773714-70773733 Msa0660180:CDS 60.0%
CACAAAGCTCGGGCATACGC+AGG + chr4_3:70774770-70774789 Msa0660180:three_prime_UTR 60.0%
GGCATACGCAGGGTCTGGAA+AGG + chr4_3:70774781-70774800 Msa0660180:three_prime_UTR 60.0%
CCGGGGAACCTAGACGGCAA+AGG + chr4_3:70773712-70773731 Msa0660180:CDS 65.0%
CCGGGGAACCTAGACGGCAA+AGG + chr4_3:70773712-70773731 Msa0660180:CDS 65.0%
GCTCGGGCATACGCAGGGTC+TGG + chr4_3:70774776-70774795 Msa0660180:three_prime_UTR 70.0%
GCTCGGGCATACGCAGGGTC+TGG + chr4_3:70774776-70774795 Msa0660180:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 70773161 70775008 70773161 ID=Msa0660180;Name=Msa0660180
chr4_3 mRNA 70773161 70775008 70773161 ID=Msa0660180-mRNA-1;Parent=Msa0660180;Name=Msa0660180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=20|1|1|1|1|1|2|477|305
chr4_3 exon 70773161 70774045 70773161 ID=Msa0660180-mRNA-1:exon:21064;Parent=Msa0660180-mRNA-1
chr4_3 exon 70774479 70775008 70774479 ID=Msa0660180-mRNA-1:exon:21065;Parent=Msa0660180-mRNA-1
chr4_3 five_prime_UTR 70773161 70773180 70773161 ID=Msa0660180-mRNA-1:five_prime_utr;Parent=Msa0660180-mRNA-1
chr4_3 CDS 70773181 70774045 70773181 ID=Msa0660180-mRNA-1:cds;Parent=Msa0660180-mRNA-1
chr4_3 CDS 70774479 70774531 70774479 ID=Msa0660180-mRNA-1:cds;Parent=Msa0660180-mRNA-1
chr4_3 three_prime_UTR 70774532 70775008 70774532 ID=Msa0660180-mRNA-1:three_prime_utr;Parent=Msa0660180-mRNA-1
Gene Sequence

>Msa0660180

ATGGCACTACCACCACTACTACCACCTCTTTCCACCCTCATCAACCTTTTCATGATTCTCATCTTAGCATCCACACCCACAGCCTCAACAACACTAACAGTGTGCCATGACACATGTGGCTCAATACAAGTCAAGTATCCCTTTGGCACAGGTCCTGGTTGCGGGTCCCCACTATTCAACCCATACATAACATGCACATCAAATGGAACAATAGACCAACTCATCCTCAAAACTCACACATCCTCATACCCTATAACCTCCATTTCATACACCACTTCCACTCTCACACTCACACCACCCTACATGTCTACTTGCACCACCATGCAAACGTCACCAAACTTTGGCATTGATTTAACTGCACCATTCCAAATATCTTCATCCACTTTCATCCTCCTCTCTTGCCAAGAAAAGAGTTCAACCATTTGTGACACTTCTTTTGATTACCTTTGTGCTTCTCTTTACTCTTGCCCTCAAGTAGTCTCACTTGGTATGCCTCTTTTTTCTCCTACTAACACATGTTGTGTATACTCACCGGGGAACCTAGACGGCAAAGGGGAGTTGAATCTTAGAGAGAATGATTGTAGTGGTTATACTTCGGTTGTGTCACTTGGTGATAACCCTACTGATCCTACTCATTGGGTTTATGGAGTGGCATTGAAATATACTCATGGTGCTTTTGATAACTTTGCAACCACTAAATGTACTAGTTGTGAGAGTAGTGGTGGTGTATGTGGATATGCTCCTCCAGGAAGTGGATTTGTTTGTGTTTGTAAAGGTGGATATAATACTAGCCTTGATTGCTCTAATTACGATCAAAACCAAGATTTCCTTTGGGACTCTATCTCTCCTCCTCCCATGTACAACATTGGGAATGTCTGGAGTTCCATCTTGGCTGGTATCATTTTCAGCCTAGTGTAA
Protein sequence

>Msa0660180

MALPPLLPPLSTLINLFMILILASTPTASTTLTVCHDTCGSIQVKYPFGTGPGCGSPLFNPYITCTSNGTIDQLILKTHTSSYPITSISYTTSTLTLTPPYMSTCTTMQTSPNFGIDLTAPFQISSSTFILLSCQEKSSTICDTSFDYLCASLYSCPQVVSLGMPLFSPTNTCCVYSPGNLDGKGELNLRENDCSGYTSVVSLGDNPTDPTHWVYGVALKYTHGAFDNFATTKCTSCESSGGVCGYAPPGSGFVCVCKGGYNTSLDCSNYDQNQDFLWDSISPPPMYNIGNVWSSILAGIIFSLV*