AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0929460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929460 MtrunA17_Chr8g0381971 93.056 288 15 2 1 288 1 283 0.0 529
Msa0929460 MtrunA17_Chr5g0415341 38.489 278 139 8 5 267 6 266 2.70e-53 176
Msa0929460 MtrunA17_Chr4g0058901 29.286 280 157 12 13 267 12 275 5.69e-26 104
Msa0929460 MtrunA17_Chr4g0069121 28.112 249 154 8 31 268 30 264 3.05e-22 94.4
Msa0929460 MtrunA17_Chr4g0075211 27.985 268 147 11 33 274 36 283 1.09e-21 93.6
Msa0929460 MtrunA17_Chr2g0288891 28.000 275 150 13 27 274 16 269 3.00e-19 86.3
Msa0929460 MtrunA17_Chr3g0112391 27.451 255 143 14 39 282 31 254 4.38e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929460 AT1G10380.1 40.964 249 126 6 34 267 28 270 1.62e-45 156
Msa0929460 AT1G10380.2 40.964 249 126 6 34 267 28 270 3.50e-45 155
Msa0929460 AT3G17350.2 29.304 273 162 10 16 270 12 271 4.84e-22 94.0
Msa0929460 AT1G11915.1 29.682 283 152 13 7 260 1 265 9.68e-22 94.0
Msa0929460 AT3G17350.1 29.167 264 157 9 16 262 12 262 1.06e-20 90.5
Msa0929460 AT5G50290.1 28.000 275 161 12 18 267 4 266 1.71e-20 90.1

Find 112 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTACTCATTGGGTTTA+TGG 0.115730 6_2:+77399796 Msa0929460:CDS
TGAAAGTGGATGAAGATATT+TGG 0.257191 6_2:-77399537 None:intergenic
TTGGCACAGGTCCTGGTTGC+GGG 0.266168 6_2:+77399314 Msa0929460:CDS
GTGTATGAAATGGAGGTTAT+AGG 0.283646 6_2:-77399421 None:intergenic
TGCGTCAAAGCTTCCACTTT+TGG 0.298303 6_2:+77400885 Msa0929460:three_prime_UTR
CTCACAACTAGTACATTTAG+TGG 0.331784 6_2:-77399863 None:intergenic
ATCAAAACCAAGATTTCCTT+TGG 0.338876 6_2:+77399983 Msa0929460:CDS
TTTGATGTGCATGTTATGTA+TGG 0.363083 6_2:-77399352 None:intergenic
GTTAAATCAATGCCAAAGTT+TGG 0.363622 6_2:-77399505 None:intergenic
TACATAACATGCACATCAAA+TGG 0.388250 6_2:+77399355 Msa0929460:CDS
CGGGGAACCTAGACGGCAAA+GGG 0.391013 6_2:+77399704 Msa0929460:CDS
TTTGGCACAGGTCCTGGTTG+CGG 0.395015 6_2:+77399313 Msa0929460:CDS
ACACAAACAAATCCACTTCC+TGG 0.398611 6_2:-77399916 None:intergenic
TCAACTCCCCTTTGCCGTCT+AGG 0.402495 6_2:-77399711 None:intergenic
TAGAGTCCCAAAGGAAATCT+TGG 0.407259 6_2:-77399990 None:intergenic
TATCCCTTTGGCACAGGTCC+TGG 0.410285 6_2:+77399307 Msa0929460:CDS
GGCAGTCAGTGCACAAAGCT+CGG 0.415721 6_2:+77400749 Msa0929460:three_prime_UTR
GATCGTAATTAGAGCAATCA+AGG 0.418096 6_2:-77399963 None:intergenic
CCCTACTGATCCTACTCATT+GGG 0.420444 6_2:+77399789 Msa0929460:CDS
GCTCGGGCATACGCAGGGTC+TGG 0.421720 6_2:+77400766 Msa0929460:three_prime_UTR
GTTATGTATGGGTTGAATAG+TGG 0.421768 6_2:-77399340 None:intergenic
GAATGTCTGGAGTTCCATCT+TGG 0.421862 6_2:+77400474 Msa0929460:CDS
TGTATGAAATGGAGGTTATA+GGG 0.425846 6_2:-77399420 None:intergenic
TGTTGTTGAGGCTGTGGGTG+TGG 0.432596 6_2:-77399242 None:intergenic
TATACACAACATGTGTTAGT+AGG 0.444066 6_2:-77399676 None:intergenic
TATGAACAGTTGGGAATGTC+TGG 0.453180 6_2:+77400461 Msa0929460:intron
ACCCTACTGATCCTACTCAT+TGG 0.456155 6_2:+77399788 Msa0929460:CDS
TTTGTTTGTGTTTGTAAAGG+TGG 0.459550 6_2:+77399928 Msa0929460:CDS
AATGGAGGTTATAGGGTATG+AGG 0.466527 6_2:-77399413 None:intergenic
TCAAAACCAAGATTTCCTTT+GGG 0.473584 6_2:+77399984 Msa0929460:CDS
AGATAACAATACACCAAAAG+TGG 0.476574 6_2:-77400898 None:intergenic
TGTTAGTGTTGTTGAGGCTG+TGG 0.477766 6_2:-77399248 None:intergenic
GTCTGGAGTTCCATCTTGGC+TGG 0.482605 6_2:+77400478 Msa0929460:CDS
CACAAAGCTCGGGCATACGC+AGG 0.489024 6_2:+77400760 Msa0929460:three_prime_UTR
ATGCAAACGTCACCAAACTT+TGG 0.492190 6_2:+77399493 Msa0929460:CDS
ATACAAGTCAAGTATCCCTT+TGG 0.494214 6_2:+77399295 Msa0929460:CDS
GCAGTCAGTGCACAAAGCTC+GGG 0.496072 6_2:+77400750 Msa0929460:three_prime_UTR
CCGGGGAACCTAGACGGCAA+AGG 0.496288 6_2:+77399703 Msa0929460:CDS
GTTGTGTACAATACATCAAA+TGG 0.496946 6_2:-77400800 None:intergenic
CACATGTTGTGTATACTCAC+CGG 0.497181 6_2:+77399684 Msa0929460:CDS
ATCAAAAGAAGTGTCACAAA+TGG 0.498238 6_2:-77399590 None:intergenic
CCTTTGCCGTCTAGGTTCCC+CGG 0.498477 6_2:-77399703 None:intergenic
TATTCAACATCAATATGTAA+TGG 0.500190 6_2:-77400956 None:intergenic
GTGGAAAGAGGTGGTAGTAG+TGG 0.501478 6_2:-77399184 None:intergenic
TGTGAGTGTGAGAGTGGAAG+TGG 0.506008 6_2:-77399443 None:intergenic
CTAAGATGAGAATCATGAAA+AGG 0.513752 6_2:-77399216 None:intergenic
GGGTGGTGTGAGTGTGAGAG+TGG 0.515614 6_2:-77399449 None:intergenic
TAATCGGATGATAATGCTGC+TGG 0.516924 6_2:+77400520 Msa0929460:exon
TACACTAGACTAGACTTCAT+AGG 0.517749 6_2:-77400673 None:intergenic
GTTAGTGTTGTTGAGGCTGT+GGG 0.518223 6_2:-77399247 None:intergenic
TATACTTCGGTTGTGTCACT+TGG 0.519729 6_2:+77399760 Msa0929460:CDS
AGTGGAAGTGGTGTATGAAA+TGG 0.521135 6_2:-77399431 None:intergenic
GAAAATGATACCAGCCAAGA+TGG 0.521207 6_2:-77400488 None:intergenic
GGATATGCTCCTCCAGGAAG+TGG 0.522288 6_2:+77399904 Msa0929460:CDS
AATAGTGGGGACCCGCAACC+AGG 0.526866 6_2:-77399325 None:intergenic
AGTAGTGGTGGTAGTGCCAT+TGG 0.534426 6_2:-77399169 None:intergenic
GGATTTGTTTGTGTTTGTAA+AGG 0.540887 6_2:+77399925 Msa0929460:CDS
GCAACCAGGACCTGTGCCAA+AGG 0.541377 6_2:-77399311 None:intergenic
AAGTGGAAGCTTTGACGCAA+AGG 0.544197 6_2:-77400881 None:intergenic
GCAAGAGAGGAGGATGAAAG+TGG 0.545372 6_2:-77399551 None:intergenic
GTCAAGTATCCCTTTGGCAC+AGG 0.545996 6_2:+77399301 Msa0929460:CDS
ACATGTTGTGTATACTCACC+GGG 0.550531 6_2:+77399685 Msa0929460:CDS
ACCCAATGAGTAGGATCAGT+AGG 0.552236 6_2:-77399790 None:intergenic
TGCCCTCAAGTAGTCTCACT+TGG 0.552797 6_2:+77399637 Msa0929460:CDS
GAGAGTAGTGGTGGTGTATG+TGG 0.555000 6_2:+77399883 Msa0929460:CDS
TACTCATTGGGTTTATGGAG+TGG 0.555908 6_2:+77399801 Msa0929460:CDS
CATGAAAAGGTTGATGAGGG+TGG 0.559660 6_2:-77399203 None:intergenic
CAACCAGGACCTGTGCCAAA+GGG 0.563262 6_2:-77399310 None:intergenic
TTGATGTGCATGTTATGTAT+GGG 0.566236 6_2:-77399351 None:intergenic
TAGACTAGACTTCATAGGAA+TGG 0.567381 6_2:-77400668 None:intergenic
TTATGTATGGGTTGAATAGT+GGG 0.567840 6_2:-77399339 None:intergenic
CATTATCATCCGATTACACT+AGG 0.569260 6_2:-77400513 None:intergenic
GGAAGTGGTGTATGAAATGG+AGG 0.572115 6_2:-77399428 None:intergenic
AAAGTTTGGTGACGTTTGCA+TGG 0.574117 6_2:-77399491 None:intergenic
GAAAGAGGTGGTAGTAGTGG+TGG 0.574477 6_2:-77399181 None:intergenic
CCCAATGAGTAGGATCAGTA+GGG 0.577746 6_2:-77399789 None:intergenic
GTATGTGGATATGCTCCTCC+AGG 0.583052 6_2:+77399898 Msa0929460:CDS
GAGGAGAGATAGAGTCCCAA+AGG 0.583741 6_2:-77399999 None:intergenic
TGATTGTAGTGGTTATACTT+CGG 0.584725 6_2:+77399747 Msa0929460:CDS
GGTGGTGCAAGTAGACATGT+AGG 0.584778 6_2:-77399470 None:intergenic
AGGTTGATGAGGGTGGAAAG+AGG 0.585956 6_2:-77399196 None:intergenic
GCACACTGTTAGTGTTGTTG+AGG 0.594642 6_2:-77399254 None:intergenic
TACCAAGTGAGACTACTTGA+GGG 0.596440 6_2:-77399639 None:intergenic
ATACCAAGTGAGACTACTTG+AGG 0.598463 6_2:-77399640 None:intergenic
GGCATACGCAGGGTCTGGAA+AGG 0.609211 6_2:+77400771 Msa0929460:three_prime_UTR
CTTAGAGAGAATGATTGTAG+TGG 0.610496 6_2:+77399736 Msa0929460:CDS
GTGGATGAAGATATTTGGAA+TGG 0.613981 6_2:-77399532 None:intergenic
TACTCACCGGGGAACCTAGA+CGG 0.615280 6_2:+77399697 Msa0929460:CDS
AACATACTGTTGTACATGGG+AGG 0.621855 6_2:-77400021 None:intergenic
ACTCCATAAACCCAATGAGT+AGG 0.626290 6_2:-77399799 None:intergenic
ACAAAGCTCGGGCATACGCA+GGG 0.627608 6_2:+77400761 Msa0929460:three_prime_UTR
GAATCATGAAAAGGTTGATG+AGG 0.631423 6_2:-77399207 None:intergenic
CTAACAGTTAAGTCATTCAG+AGG 0.631884 6_2:+77400561 Msa0929460:three_prime_UTR
TTGATGAGGGTGGAAAGAGG+TGG 0.635922 6_2:-77399193 None:intergenic
ATACTGTTGTACATGGGAGG+AGG 0.638228 6_2:-77400018 None:intergenic
AATCATGAAAAGGTTGATGA+GGG 0.650509 6_2:-77399206 None:intergenic
AAGAGTAAAGAGAAGCACAA+AGG 0.652408 6_2:-77399615 None:intergenic
TGGAACACAAGCAAAGCCAA+TGG 0.663304 6_2:+77399153 Msa0929460:exon
GTTTGGTGACGTTTGCATGG+TGG 0.670403 6_2:-77399488 None:intergenic
GTGGCATTGAAATATACTCA+TGG 0.674830 6_2:+77399820 Msa0929460:CDS
GTATTGAGCCACATGTGTCA+TGG 0.676021 6_2:-77399276 None:intergenic
AATCGGATGATAATGCTGCT+GGG 0.679814 6_2:+77400521 Msa0929460:exon
ACAGTTAAGTCATTCAGAGG+AGG 0.686509 6_2:+77400564 Msa0929460:three_prime_UTR
GGGGAACCTAGACGGCAAAG+GGG 0.692978 6_2:+77399705 Msa0929460:CDS
GTGGTGCAAGTAGACATGTA+GGG 0.696710 6_2:-77399469 None:intergenic
ACTAGTTGTGAGAGTAGTGG+TGG 0.700797 6_2:+77399874 Msa0929460:CDS
TGTACTAGTTGTGAGAGTAG+TGG 0.707622 6_2:+77399871 Msa0929460:CDS
TATGTATGGGTTGAATAGTG+GGG 0.729462 6_2:-77399338 None:intergenic
GTGCAAGTAGACATGTAGGG+TGG 0.743146 6_2:-77399466 None:intergenic
CATGTTGTGTATACTCACCG+GGG 0.745636 6_2:+77399686 Msa0929460:CDS
ACAGTGTGCCATGACACATG+TGG 0.759996 6_2:+77399268 Msa0929460:CDS
CAAACAAATCCACTTCCTGG+AGG 0.785898 6_2:-77399913 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATAAGTAAGTAATT+AGG + chr6_2:77400154-77400173 Msa0929460:intron 10.0%
!! TATATATAAGTAAGTAATTA+GGG + chr6_2:77400155-77400174 Msa0929460:intron 10.0%
!! TTATATATAAGTAAGTAATT+AGG + chr6_2:77400154-77400173 Msa0929460:intron 10.0%
!! TATATATAAGTAAGTAATTA+GGG + chr6_2:77400155-77400174 Msa0929460:intron 10.0%
!! ATATATAAGTAAGTAATTAG+GGG + chr6_2:77400156-77400175 Msa0929460:intron 15.0%
!! TGTATTGTCAAAAAAATAAA+AGG + chr6_2:77400727-77400746 Msa0929460:three_prime_UTR 15.0%
!! GTATTGTCAAAAAAATAAAA+GGG + chr6_2:77400728-77400747 Msa0929460:three_prime_UTR 15.0%
!! TAACAAAAAAAACTATCTTT+AGG + chr6_2:77400977-77400996 Msa0929460:three_prime_UTR 15.0%
!! ATATATAAGTAAGTAATTAG+GGG + chr6_2:77400156-77400175 Msa0929460:intron 15.0%
!! TGTATTGTCAAAAAAATAAA+AGG + chr6_2:77400727-77400746 Msa0929460:three_prime_UTR 15.0%
!! GTATTGTCAAAAAAATAAAA+GGG + chr6_2:77400728-77400747 Msa0929460:three_prime_UTR 15.0%
!!! GTCTTTTTTAATTTTCATAC+AGG + chr6_2:77400122-77400141 Msa0929460:intron 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG + chr6_2:77400627-77400646 Msa0929460:three_prime_UTR 20.0%
!!! TTTTTTTTTTTGTACAAGTC+TGG + chr6_2:77400704-77400723 Msa0929460:three_prime_UTR 20.0%
!! TCTGTAAAAAAAAAATTGCA+TGG + chr6_2:77400920-77400939 Msa0929460:three_prime_UTR 20.0%
!! TATTCAACATCAATATGTAA+TGG - chr6_2:77400959-77400978 None:intergenic 20.0%
!!! GTCTTTTTTAATTTTCATAC+AGG + chr6_2:77400122-77400141 Msa0929460:intron 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG + chr6_2:77400627-77400646 Msa0929460:three_prime_UTR 20.0%
!!! TTTTTTTTTTTGTACAAGTC+TGG + chr6_2:77400704-77400723 Msa0929460:three_prime_UTR 20.0%
!! TCTGTAAAAAAAAAATTGCA+TGG + chr6_2:77400920-77400939 Msa0929460:three_prime_UTR 20.0%
!! TATTCAACATCAATATGTAA+TGG - chr6_2:77400959-77400978 None:intergenic 20.0%
! AAAAACATACTGTTGTACAT+GGG - chr6_2:77400027-77400046 None:intergenic 25.0%
! AAAGAAACAACAAAAAGAGA+AGG - chr6_2:77400050-77400069 None:intergenic 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG + chr6_2:77400235-77400254 Msa0929460:intron 25.0%
! CAAGAAAAAGGAAAAATAGA+TGG + chr6_2:77400247-77400266 Msa0929460:intron 25.0%
! AAAAAGGAAAAATAGATGGT+TGG + chr6_2:77400251-77400270 Msa0929460:intron 25.0%
! AAAACAATATGCCAAAGTAA+TGG + chr6_2:77400316-77400335 Msa0929460:intron 25.0%
! AAACAATATGCCAAAGTAAT+GGG + chr6_2:77400317-77400336 Msa0929460:intron 25.0%
! ATAATAGTTACCCATTACTT+TGG - chr6_2:77400330-77400349 None:intergenic 25.0%
! TATTATTCTGTACACTTGAA+AGG + chr6_2:77400344-77400363 Msa0929460:intron 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG + chr6_2:77400390-77400409 Msa0929460:intron 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG - chr6_2:77400600-77400619 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG - chr6_2:77400623-77400642 None:intergenic 25.0%
! AAAAACATACTGTTGTACAT+GGG - chr6_2:77400027-77400046 None:intergenic 25.0%
! AAAGAAACAACAAAAAGAGA+AGG - chr6_2:77400050-77400069 None:intergenic 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG + chr6_2:77400235-77400254 Msa0929460:intron 25.0%
! CAAGAAAAAGGAAAAATAGA+TGG + chr6_2:77400247-77400266 Msa0929460:intron 25.0%
! AAAAAGGAAAAATAGATGGT+TGG + chr6_2:77400251-77400270 Msa0929460:intron 25.0%
! AAAACAATATGCCAAAGTAA+TGG + chr6_2:77400316-77400335 Msa0929460:intron 25.0%
! AAACAATATGCCAAAGTAAT+GGG + chr6_2:77400317-77400336 Msa0929460:intron 25.0%
! ATAATAGTTACCCATTACTT+TGG - chr6_2:77400330-77400349 None:intergenic 25.0%
! TATTATTCTGTACACTTGAA+AGG + chr6_2:77400344-77400363 Msa0929460:intron 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG + chr6_2:77400390-77400409 Msa0929460:intron 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG - chr6_2:77400600-77400619 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG - chr6_2:77400623-77400642 None:intergenic 25.0%
!! AATCATGAAAAGGTTGATGA+GGG - chr6_2:77399209-77399228 None:intergenic 30.0%
CTAAGATGAGAATCATGAAA+AGG - chr6_2:77399219-77399238 None:intergenic 30.0%
! TTATGTATGGGTTGAATAGT+GGG - chr6_2:77399342-77399361 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG - chr6_2:77399354-77399373 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG - chr6_2:77399355-77399374 None:intergenic 30.0%
TACATAACATGCACATCAAA+TGG + chr6_2:77399355-77399374 Msa0929460:CDS 30.0%
TGTATGAAATGGAGGTTATA+GGG - chr6_2:77399423-77399442 None:intergenic 30.0%
GTTAAATCAATGCCAAAGTT+TGG - chr6_2:77399508-77399527 None:intergenic 30.0%
TGAAAGTGGATGAAGATATT+TGG - chr6_2:77399540-77399559 None:intergenic 30.0%
! AAATGGTTGAACTCTTTTCT+TGG - chr6_2:77399576-77399595 None:intergenic 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG - chr6_2:77399593-77399612 None:intergenic 30.0%
TATACACAACATGTGTTAGT+AGG - chr6_2:77399679-77399698 None:intergenic 30.0%
TGATTGTAGTGGTTATACTT+CGG + chr6_2:77399747-77399766 Msa0929460:CDS 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG + chr6_2:77399925-77399944 Msa0929460:CDS 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG + chr6_2:77399928-77399947 Msa0929460:CDS 30.0%
ATCAAAACCAAGATTTCCTT+TGG + chr6_2:77399983-77400002 Msa0929460:CDS 30.0%
TCAAAACCAAGATTTCCTTT+GGG + chr6_2:77399984-77400003 Msa0929460:CDS 30.0%
GAAAAACATACTGTTGTACA+TGG - chr6_2:77400028-77400047 None:intergenic 30.0%
! TTTACATTCCCCATAGTTTT+CGG + chr6_2:77400099-77400118 Msa0929460:intron 30.0%
AAAAAAGACCCGAAAACTAT+GGG - chr6_2:77400111-77400130 None:intergenic 30.0%
TAAAAAAGACCCGAAAACTA+TGG - chr6_2:77400112-77400131 None:intergenic 30.0%
GAAATGAGTCAAATGACTAT+TGG + chr6_2:77400178-77400197 Msa0929460:intron 30.0%
GTTGTGTACAATACATCAAA+TGG - chr6_2:77400803-77400822 None:intergenic 30.0%
!!! CACAACTTTACCTTGTTTTT+AGG + chr6_2:77400817-77400836 Msa0929460:three_prime_UTR 30.0%
AGATAACAATACACCAAAAG+TGG - chr6_2:77400901-77400920 None:intergenic 30.0%
!! AATCATGAAAAGGTTGATGA+GGG - chr6_2:77399209-77399228 None:intergenic 30.0%
CTAAGATGAGAATCATGAAA+AGG - chr6_2:77399219-77399238 None:intergenic 30.0%
! TTATGTATGGGTTGAATAGT+GGG - chr6_2:77399342-77399361 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG - chr6_2:77399354-77399373 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG - chr6_2:77399355-77399374 None:intergenic 30.0%
TACATAACATGCACATCAAA+TGG + chr6_2:77399355-77399374 Msa0929460:CDS 30.0%
TGTATGAAATGGAGGTTATA+GGG - chr6_2:77399423-77399442 None:intergenic 30.0%
GTTAAATCAATGCCAAAGTT+TGG - chr6_2:77399508-77399527 None:intergenic 30.0%
TGAAAGTGGATGAAGATATT+TGG - chr6_2:77399540-77399559 None:intergenic 30.0%
! AAATGGTTGAACTCTTTTCT+TGG - chr6_2:77399576-77399595 None:intergenic 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG - chr6_2:77399593-77399612 None:intergenic 30.0%
TATACACAACATGTGTTAGT+AGG - chr6_2:77399679-77399698 None:intergenic 30.0%
TGATTGTAGTGGTTATACTT+CGG + chr6_2:77399747-77399766 Msa0929460:CDS 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG + chr6_2:77399925-77399944 Msa0929460:CDS 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG + chr6_2:77399928-77399947 Msa0929460:CDS 30.0%
ATCAAAACCAAGATTTCCTT+TGG + chr6_2:77399983-77400002 Msa0929460:CDS 30.0%
TCAAAACCAAGATTTCCTTT+GGG + chr6_2:77399984-77400003 Msa0929460:CDS 30.0%
GAAAAACATACTGTTGTACA+TGG - chr6_2:77400028-77400047 None:intergenic 30.0%
! TTTACATTCCCCATAGTTTT+CGG + chr6_2:77400099-77400118 Msa0929460:intron 30.0%
AAAAAAGACCCGAAAACTAT+GGG - chr6_2:77400111-77400130 None:intergenic 30.0%
TAAAAAAGACCCGAAAACTA+TGG - chr6_2:77400112-77400131 None:intergenic 30.0%
GAAATGAGTCAAATGACTAT+TGG + chr6_2:77400178-77400197 Msa0929460:intron 30.0%
GTTGTGTACAATACATCAAA+TGG - chr6_2:77400803-77400822 None:intergenic 30.0%
!!! CACAACTTTACCTTGTTTTT+AGG + chr6_2:77400817-77400836 Msa0929460:three_prime_UTR 30.0%
AGATAACAATACACCAAAAG+TGG - chr6_2:77400901-77400920 None:intergenic 30.0%
!! GAATCATGAAAAGGTTGATG+AGG - chr6_2:77399210-77399229 None:intergenic 35.0%
ATACAAGTCAAGTATCCCTT+TGG + chr6_2:77399295-77399314 Msa0929460:CDS 35.0%
! TATGTATGGGTTGAATAGTG+GGG - chr6_2:77399341-77399360 None:intergenic 35.0%
! GTTATGTATGGGTTGAATAG+TGG - chr6_2:77399343-77399362 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG - chr6_2:77399424-77399443 None:intergenic 35.0%
GTGGATGAAGATATTTGGAA+TGG - chr6_2:77399535-77399554 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG - chr6_2:77399618-77399637 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG - chr6_2:77399667-77399686 None:intergenic 35.0%
CTTAGAGAGAATGATTGTAG+TGG + chr6_2:77399736-77399755 Msa0929460:CDS 35.0%
! GTGGCATTGAAATATACTCA+TGG + chr6_2:77399820-77399839 Msa0929460:CDS 35.0%
CTCACAACTAGTACATTTAG+TGG - chr6_2:77399866-77399885 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG - chr6_2:77399966-77399985 None:intergenic 35.0%
! TTACATTCCCCATAGTTTTC+GGG + chr6_2:77400100-77400119 Msa0929460:intron 35.0%
AAAAAGACCCGAAAACTATG+GGG - chr6_2:77400110-77400129 None:intergenic 35.0%
AAAAATAGATGGTTGGACGA+TGG + chr6_2:77400258-77400277 Msa0929460:intron 35.0%
CTGTTCTGTTATGAACAGTT+GGG + chr6_2:77400452-77400471 Msa0929460:intron 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG + chr6_2:77400504-77400523 Msa0929460:exon 35.0%
CATTATCATCCGATTACACT+AGG - chr6_2:77400516-77400535 None:intergenic 35.0%
CTAACAGTTAAGTCATTCAG+AGG + chr6_2:77400561-77400580 Msa0929460:three_prime_UTR 35.0%
TAGACTAGACTTCATAGGAA+TGG - chr6_2:77400671-77400690 None:intergenic 35.0%
TACACTAGACTAGACTTCAT+AGG - chr6_2:77400676-77400695 None:intergenic 35.0%
CAGTCTCTTACCTAAAAACA+AGG - chr6_2:77400830-77400849 None:intergenic 35.0%
!! GAATCATGAAAAGGTTGATG+AGG - chr6_2:77399210-77399229 None:intergenic 35.0%
ATACAAGTCAAGTATCCCTT+TGG + chr6_2:77399295-77399314 Msa0929460:CDS 35.0%
! TATGTATGGGTTGAATAGTG+GGG - chr6_2:77399341-77399360 None:intergenic 35.0%
! GTTATGTATGGGTTGAATAG+TGG - chr6_2:77399343-77399362 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG - chr6_2:77399424-77399443 None:intergenic 35.0%
GTGGATGAAGATATTTGGAA+TGG - chr6_2:77399535-77399554 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG - chr6_2:77399618-77399637 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG - chr6_2:77399667-77399686 None:intergenic 35.0%
CTTAGAGAGAATGATTGTAG+TGG + chr6_2:77399736-77399755 Msa0929460:CDS 35.0%
! GTGGCATTGAAATATACTCA+TGG + chr6_2:77399820-77399839 Msa0929460:CDS 35.0%
CTCACAACTAGTACATTTAG+TGG - chr6_2:77399866-77399885 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG - chr6_2:77399966-77399985 None:intergenic 35.0%
! TTACATTCCCCATAGTTTTC+GGG + chr6_2:77400100-77400119 Msa0929460:intron 35.0%
AAAAAGACCCGAAAACTATG+GGG - chr6_2:77400110-77400129 None:intergenic 35.0%
AAAAATAGATGGTTGGACGA+TGG + chr6_2:77400258-77400277 Msa0929460:intron 35.0%
CTGTTCTGTTATGAACAGTT+GGG + chr6_2:77400452-77400471 Msa0929460:intron 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG + chr6_2:77400504-77400523 Msa0929460:exon 35.0%
CATTATCATCCGATTACACT+AGG - chr6_2:77400516-77400535 None:intergenic 35.0%
CTAACAGTTAAGTCATTCAG+AGG + chr6_2:77400561-77400580 Msa0929460:three_prime_UTR 35.0%
TAGACTAGACTTCATAGGAA+TGG - chr6_2:77400671-77400690 None:intergenic 35.0%
TACACTAGACTAGACTTCAT+AGG - chr6_2:77400676-77400695 None:intergenic 35.0%
CAGTCTCTTACCTAAAAACA+AGG - chr6_2:77400830-77400849 None:intergenic 35.0%
!!! TGTGAGTTTTGAGGATGAGT+TGG - chr6_2:77399390-77399409 None:intergenic 40.0%
! ATGAGGATGTGTGAGTTTTG+AGG - chr6_2:77399399-77399418 None:intergenic 40.0%
AATGGAGGTTATAGGGTATG+AGG - chr6_2:77399416-77399435 None:intergenic 40.0%
AGTGGAAGTGGTGTATGAAA+TGG - chr6_2:77399434-77399453 None:intergenic 40.0%
!! AAAGTTTGGTGACGTTTGCA+TGG - chr6_2:77399494-77399513 None:intergenic 40.0%
ATGCAAACGTCACCAAACTT+TGG + chr6_2:77399493-77399512 Msa0929460:CDS 40.0%
! AACTCTTTTCTTGGCAAGAG+AGG - chr6_2:77399567-77399586 None:intergenic 40.0%
TACCAAGTGAGACTACTTGA+GGG - chr6_2:77399642-77399661 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG - chr6_2:77399643-77399662 None:intergenic 40.0%
CACATGTTGTGTATACTCAC+CGG + chr6_2:77399684-77399703 Msa0929460:CDS 40.0%
ACATGTTGTGTATACTCACC+GGG + chr6_2:77399685-77399704 Msa0929460:CDS 40.0%
! TATACTTCGGTTGTGTCACT+TGG + chr6_2:77399760-77399779 Msa0929460:CDS 40.0%
GATCCTACTCATTGGGTTTA+TGG + chr6_2:77399796-77399815 Msa0929460:CDS 40.0%
ACTCCATAAACCCAATGAGT+AGG - chr6_2:77399802-77399821 None:intergenic 40.0%
TACTCATTGGGTTTATGGAG+TGG + chr6_2:77399801-77399820 Msa0929460:CDS 40.0%
TGTACTAGTTGTGAGAGTAG+TGG + chr6_2:77399871-77399890 Msa0929460:CDS 40.0%
ACACAAACAAATCCACTTCC+TGG - chr6_2:77399919-77399938 None:intergenic 40.0%
TAGAGTCCCAAAGGAAATCT+TGG - chr6_2:77399993-77400012 None:intergenic 40.0%
AACATACTGTTGTACATGGG+AGG - chr6_2:77400024-77400043 None:intergenic 40.0%
CCAACTGTTCATAACAGAAC+AGG - chr6_2:77400454-77400473 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG + chr6_2:77400451-77400470 Msa0929460:intron 40.0%
TATGAACAGTTGGGAATGTC+TGG + chr6_2:77400461-77400480 Msa0929460:intron 40.0%
GAAAATGATACCAGCCAAGA+TGG - chr6_2:77400491-77400510 None:intergenic 40.0%
! TAATCGGATGATAATGCTGC+TGG + chr6_2:77400520-77400539 Msa0929460:exon 40.0%
! AATCGGATGATAATGCTGCT+GGG + chr6_2:77400521-77400540 Msa0929460:exon 40.0%
ACAGTTAAGTCATTCAGAGG+AGG + chr6_2:77400564-77400583 Msa0929460:three_prime_UTR 40.0%
!!! TGTGAGTTTTGAGGATGAGT+TGG - chr6_2:77399390-77399409 None:intergenic 40.0%
! ATGAGGATGTGTGAGTTTTG+AGG - chr6_2:77399399-77399418 None:intergenic 40.0%
AATGGAGGTTATAGGGTATG+AGG - chr6_2:77399416-77399435 None:intergenic 40.0%
AGTGGAAGTGGTGTATGAAA+TGG - chr6_2:77399434-77399453 None:intergenic 40.0%
!! AAAGTTTGGTGACGTTTGCA+TGG - chr6_2:77399494-77399513 None:intergenic 40.0%
ATGCAAACGTCACCAAACTT+TGG + chr6_2:77399493-77399512 Msa0929460:CDS 40.0%
! AACTCTTTTCTTGGCAAGAG+AGG - chr6_2:77399567-77399586 None:intergenic 40.0%
TACCAAGTGAGACTACTTGA+GGG - chr6_2:77399642-77399661 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG - chr6_2:77399643-77399662 None:intergenic 40.0%
CACATGTTGTGTATACTCAC+CGG + chr6_2:77399684-77399703 Msa0929460:CDS 40.0%
ACATGTTGTGTATACTCACC+GGG + chr6_2:77399685-77399704 Msa0929460:CDS 40.0%
! TATACTTCGGTTGTGTCACT+TGG + chr6_2:77399760-77399779 Msa0929460:CDS 40.0%
GATCCTACTCATTGGGTTTA+TGG + chr6_2:77399796-77399815 Msa0929460:CDS 40.0%
ACTCCATAAACCCAATGAGT+AGG - chr6_2:77399802-77399821 None:intergenic 40.0%
TACTCATTGGGTTTATGGAG+TGG + chr6_2:77399801-77399820 Msa0929460:CDS 40.0%
TGTACTAGTTGTGAGAGTAG+TGG + chr6_2:77399871-77399890 Msa0929460:CDS 40.0%
ACACAAACAAATCCACTTCC+TGG - chr6_2:77399919-77399938 None:intergenic 40.0%
TAGAGTCCCAAAGGAAATCT+TGG - chr6_2:77399993-77400012 None:intergenic 40.0%
AACATACTGTTGTACATGGG+AGG - chr6_2:77400024-77400043 None:intergenic 40.0%
CCAACTGTTCATAACAGAAC+AGG - chr6_2:77400454-77400473 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG + chr6_2:77400451-77400470 Msa0929460:intron 40.0%
TATGAACAGTTGGGAATGTC+TGG + chr6_2:77400461-77400480 Msa0929460:intron 40.0%
GAAAATGATACCAGCCAAGA+TGG - chr6_2:77400491-77400510 None:intergenic 40.0%
! TAATCGGATGATAATGCTGC+TGG + chr6_2:77400520-77400539 Msa0929460:exon 40.0%
! AATCGGATGATAATGCTGCT+GGG + chr6_2:77400521-77400540 Msa0929460:exon 40.0%
ACAGTTAAGTCATTCAGAGG+AGG + chr6_2:77400564-77400583 Msa0929460:three_prime_UTR 40.0%
TGGAACACAAGCAAAGCCAA+TGG + chr6_2:77399153-77399172 Msa0929460:exon 45.0%
!! CATGAAAAGGTTGATGAGGG+TGG - chr6_2:77399206-77399225 None:intergenic 45.0%
! GTTAGTGTTGTTGAGGCTGT+GGG - chr6_2:77399250-77399269 None:intergenic 45.0%
! TGTTAGTGTTGTTGAGGCTG+TGG - chr6_2:77399251-77399270 None:intergenic 45.0%
! GCACACTGTTAGTGTTGTTG+AGG - chr6_2:77399257-77399276 None:intergenic 45.0%
GTATTGAGCCACATGTGTCA+TGG - chr6_2:77399279-77399298 None:intergenic 45.0%
GGAAGTGGTGTATGAAATGG+AGG - chr6_2:77399431-77399450 None:intergenic 45.0%
GTGGTGCAAGTAGACATGTA+GGG - chr6_2:77399472-77399491 None:intergenic 45.0%
! TCTTTTCTTGGCAAGAGAGG+AGG - chr6_2:77399564-77399583 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG + chr6_2:77399686-77399705 Msa0929460:CDS 45.0%
ACCCTACTGATCCTACTCAT+TGG + chr6_2:77399788-77399807 Msa0929460:CDS 45.0%
CCCAATGAGTAGGATCAGTA+GGG - chr6_2:77399792-77399811 None:intergenic 45.0%
CCCTACTGATCCTACTCATT+GGG + chr6_2:77399789-77399808 Msa0929460:CDS 45.0%
ACCCAATGAGTAGGATCAGT+AGG - chr6_2:77399793-77399812 None:intergenic 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG + chr6_2:77399874-77399893 Msa0929460:CDS 45.0%
CAAACAAATCCACTTCCTGG+AGG - chr6_2:77399916-77399935 None:intergenic 45.0%
ATACTGTTGTACATGGGAGG+AGG - chr6_2:77400021-77400040 None:intergenic 45.0%
! GAATGTCTGGAGTTCCATCT+TGG + chr6_2:77400474-77400493 Msa0929460:CDS 45.0%
! AAGTGGAAGCTTTGACGCAA+AGG - chr6_2:77400884-77400903 None:intergenic 45.0%
! TGCGTCAAAGCTTCCACTTT+TGG + chr6_2:77400885-77400904 Msa0929460:three_prime_UTR 45.0%
TGGAACACAAGCAAAGCCAA+TGG + chr6_2:77399153-77399172 Msa0929460:exon 45.0%
!! CATGAAAAGGTTGATGAGGG+TGG - chr6_2:77399206-77399225 None:intergenic 45.0%
! GTTAGTGTTGTTGAGGCTGT+GGG - chr6_2:77399250-77399269 None:intergenic 45.0%
! TGTTAGTGTTGTTGAGGCTG+TGG - chr6_2:77399251-77399270 None:intergenic 45.0%
! GCACACTGTTAGTGTTGTTG+AGG - chr6_2:77399257-77399276 None:intergenic 45.0%
GTATTGAGCCACATGTGTCA+TGG - chr6_2:77399279-77399298 None:intergenic 45.0%
GGAAGTGGTGTATGAAATGG+AGG - chr6_2:77399431-77399450 None:intergenic 45.0%
GTGGTGCAAGTAGACATGTA+GGG - chr6_2:77399472-77399491 None:intergenic 45.0%
! TCTTTTCTTGGCAAGAGAGG+AGG - chr6_2:77399564-77399583 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG + chr6_2:77399686-77399705 Msa0929460:CDS 45.0%
ACCCTACTGATCCTACTCAT+TGG + chr6_2:77399788-77399807 Msa0929460:CDS 45.0%
CCCAATGAGTAGGATCAGTA+GGG - chr6_2:77399792-77399811 None:intergenic 45.0%
CCCTACTGATCCTACTCATT+GGG + chr6_2:77399789-77399808 Msa0929460:CDS 45.0%
ACCCAATGAGTAGGATCAGT+AGG - chr6_2:77399793-77399812 None:intergenic 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG + chr6_2:77399874-77399893 Msa0929460:CDS 45.0%
CAAACAAATCCACTTCCTGG+AGG - chr6_2:77399916-77399935 None:intergenic 45.0%
ATACTGTTGTACATGGGAGG+AGG - chr6_2:77400021-77400040 None:intergenic 45.0%
! GAATGTCTGGAGTTCCATCT+TGG + chr6_2:77400474-77400493 Msa0929460:CDS 45.0%
! AAGTGGAAGCTTTGACGCAA+AGG - chr6_2:77400884-77400903 None:intergenic 45.0%
! TGCGTCAAAGCTTCCACTTT+TGG + chr6_2:77400885-77400904 Msa0929460:three_prime_UTR 45.0%
! AGTAGTGGTGGTAGTGCCAT+TGG - chr6_2:77399172-77399191 None:intergenic 50.0%
GAAAGAGGTGGTAGTAGTGG+TGG - chr6_2:77399184-77399203 None:intergenic 50.0%
GTGGAAAGAGGTGGTAGTAG+TGG - chr6_2:77399187-77399206 None:intergenic 50.0%
TTGATGAGGGTGGAAAGAGG+TGG - chr6_2:77399196-77399215 None:intergenic 50.0%
!! AGGTTGATGAGGGTGGAAAG+AGG - chr6_2:77399199-77399218 None:intergenic 50.0%
ACAGTGTGCCATGACACATG+TGG + chr6_2:77399268-77399287 Msa0929460:CDS 50.0%
GTCAAGTATCCCTTTGGCAC+AGG + chr6_2:77399301-77399320 Msa0929460:CDS 50.0%
TGTGAGTGTGAGAGTGGAAG+TGG - chr6_2:77399446-77399465 None:intergenic 50.0%
GTGCAAGTAGACATGTAGGG+TGG - chr6_2:77399469-77399488 None:intergenic 50.0%
GGTGGTGCAAGTAGACATGT+AGG - chr6_2:77399473-77399492 None:intergenic 50.0%
!! GTTTGGTGACGTTTGCATGG+TGG - chr6_2:77399491-77399510 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG - chr6_2:77399554-77399573 None:intergenic 50.0%
TGCCCTCAAGTAGTCTCACT+TGG + chr6_2:77399637-77399656 Msa0929460:CDS 50.0%
! GAGAGTAGTGGTGGTGTATG+TGG + chr6_2:77399883-77399902 Msa0929460:CDS 50.0%
GTATGTGGATATGCTCCTCC+AGG + chr6_2:77399898-77399917 Msa0929460:CDS 50.0%
GAGGAGAGATAGAGTCCCAA+AGG - chr6_2:77400002-77400021 None:intergenic 50.0%
! AGTAGTGGTGGTAGTGCCAT+TGG - chr6_2:77399172-77399191 None:intergenic 50.0%
GAAAGAGGTGGTAGTAGTGG+TGG - chr6_2:77399184-77399203 None:intergenic 50.0%
GTGGAAAGAGGTGGTAGTAG+TGG - chr6_2:77399187-77399206 None:intergenic 50.0%
TTGATGAGGGTGGAAAGAGG+TGG - chr6_2:77399196-77399215 None:intergenic 50.0%
!! AGGTTGATGAGGGTGGAAAG+AGG - chr6_2:77399199-77399218 None:intergenic 50.0%
ACAGTGTGCCATGACACATG+TGG + chr6_2:77399268-77399287 Msa0929460:CDS 50.0%
GTCAAGTATCCCTTTGGCAC+AGG + chr6_2:77399301-77399320 Msa0929460:CDS 50.0%
TGTGAGTGTGAGAGTGGAAG+TGG - chr6_2:77399446-77399465 None:intergenic 50.0%
GTGCAAGTAGACATGTAGGG+TGG - chr6_2:77399469-77399488 None:intergenic 50.0%
GGTGGTGCAAGTAGACATGT+AGG - chr6_2:77399473-77399492 None:intergenic 50.0%
!! GTTTGGTGACGTTTGCATGG+TGG - chr6_2:77399491-77399510 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG - chr6_2:77399554-77399573 None:intergenic 50.0%
TGCCCTCAAGTAGTCTCACT+TGG + chr6_2:77399637-77399656 Msa0929460:CDS 50.0%
! GAGAGTAGTGGTGGTGTATG+TGG + chr6_2:77399883-77399902 Msa0929460:CDS 50.0%
GTATGTGGATATGCTCCTCC+AGG + chr6_2:77399898-77399917 Msa0929460:CDS 50.0%
GAGGAGAGATAGAGTCCCAA+AGG - chr6_2:77400002-77400021 None:intergenic 50.0%
TGTTGTTGAGGCTGTGGGTG+TGG - chr6_2:77399245-77399264 None:intergenic 55.0%
TATCCCTTTGGCACAGGTCC+TGG + chr6_2:77399307-77399326 Msa0929460:CDS 55.0%
CAACCAGGACCTGTGCCAAA+GGG - chr6_2:77399313-77399332 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG + chr6_2:77399313-77399332 Msa0929460:CDS 55.0%
TACTCACCGGGGAACCTAGA+CGG + chr6_2:77399697-77399716 Msa0929460:CDS 55.0%
TCAACTCCCCTTTGCCGTCT+AGG - chr6_2:77399714-77399733 None:intergenic 55.0%
GGATATGCTCCTCCAGGAAG+TGG + chr6_2:77399904-77399923 Msa0929460:CDS 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG + chr6_2:77400478-77400497 Msa0929460:CDS 55.0%
GGCAGTCAGTGCACAAAGCT+CGG + chr6_2:77400749-77400768 Msa0929460:three_prime_UTR 55.0%
GCAGTCAGTGCACAAAGCTC+GGG + chr6_2:77400750-77400769 Msa0929460:three_prime_UTR 55.0%
ACAAAGCTCGGGCATACGCA+GGG + chr6_2:77400761-77400780 Msa0929460:three_prime_UTR 55.0%
TGTTGTTGAGGCTGTGGGTG+TGG - chr6_2:77399245-77399264 None:intergenic 55.0%
TATCCCTTTGGCACAGGTCC+TGG + chr6_2:77399307-77399326 Msa0929460:CDS 55.0%
CAACCAGGACCTGTGCCAAA+GGG - chr6_2:77399313-77399332 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG + chr6_2:77399313-77399332 Msa0929460:CDS 55.0%
TACTCACCGGGGAACCTAGA+CGG + chr6_2:77399697-77399716 Msa0929460:CDS 55.0%
TCAACTCCCCTTTGCCGTCT+AGG - chr6_2:77399714-77399733 None:intergenic 55.0%
GGATATGCTCCTCCAGGAAG+TGG + chr6_2:77399904-77399923 Msa0929460:CDS 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG + chr6_2:77400478-77400497 Msa0929460:CDS 55.0%
GGCAGTCAGTGCACAAAGCT+CGG + chr6_2:77400749-77400768 Msa0929460:three_prime_UTR 55.0%
GCAGTCAGTGCACAAAGCTC+GGG + chr6_2:77400750-77400769 Msa0929460:three_prime_UTR 55.0%
ACAAAGCTCGGGCATACGCA+GGG + chr6_2:77400761-77400780 Msa0929460:three_prime_UTR 55.0%
GCAACCAGGACCTGTGCCAA+AGG - chr6_2:77399314-77399333 None:intergenic 60.0%
TTGGCACAGGTCCTGGTTGC+GGG + chr6_2:77399314-77399333 Msa0929460:CDS 60.0%
! AATAGTGGGGACCCGCAACC+AGG - chr6_2:77399328-77399347 None:intergenic 60.0%
GGGTGGTGTGAGTGTGAGAG+TGG - chr6_2:77399452-77399471 None:intergenic 60.0%
CCTTTGCCGTCTAGGTTCCC+CGG - chr6_2:77399706-77399725 None:intergenic 60.0%
CGGGGAACCTAGACGGCAAA+GGG + chr6_2:77399704-77399723 Msa0929460:CDS 60.0%
GGGGAACCTAGACGGCAAAG+GGG + chr6_2:77399705-77399724 Msa0929460:CDS 60.0%
CACAAAGCTCGGGCATACGC+AGG + chr6_2:77400760-77400779 Msa0929460:three_prime_UTR 60.0%
GGCATACGCAGGGTCTGGAA+AGG + chr6_2:77400771-77400790 Msa0929460:three_prime_UTR 60.0%
GCAACCAGGACCTGTGCCAA+AGG - chr6_2:77399314-77399333 None:intergenic 60.0%
TTGGCACAGGTCCTGGTTGC+GGG + chr6_2:77399314-77399333 Msa0929460:CDS 60.0%
! AATAGTGGGGACCCGCAACC+AGG - chr6_2:77399328-77399347 None:intergenic 60.0%
GGGTGGTGTGAGTGTGAGAG+TGG - chr6_2:77399452-77399471 None:intergenic 60.0%
CCTTTGCCGTCTAGGTTCCC+CGG - chr6_2:77399706-77399725 None:intergenic 60.0%
CGGGGAACCTAGACGGCAAA+GGG + chr6_2:77399704-77399723 Msa0929460:CDS 60.0%
GGGGAACCTAGACGGCAAAG+GGG + chr6_2:77399705-77399724 Msa0929460:CDS 60.0%
CACAAAGCTCGGGCATACGC+AGG + chr6_2:77400760-77400779 Msa0929460:three_prime_UTR 60.0%
GGCATACGCAGGGTCTGGAA+AGG + chr6_2:77400771-77400790 Msa0929460:three_prime_UTR 60.0%
CCGGGGAACCTAGACGGCAA+AGG + chr6_2:77399703-77399722 Msa0929460:CDS 65.0%
CCGGGGAACCTAGACGGCAA+AGG + chr6_2:77399703-77399722 Msa0929460:CDS 65.0%
GCTCGGGCATACGCAGGGTC+TGG + chr6_2:77400766-77400785 Msa0929460:three_prime_UTR 70.0%
GCTCGGGCATACGCAGGGTC+TGG + chr6_2:77400766-77400785 Msa0929460:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 77399152 77400998 77399152 ID=Msa0929460;Name=Msa0929460
chr6_2 mRNA 77399152 77400998 77399152 ID=Msa0929460-mRNA-1;Parent=Msa0929460;Name=Msa0929460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=20|1|1|1|1|1|2|476|305
chr6_2 exon 77399152 77400036 77399152 ID=Msa0929460-mRNA-1:exon:13087;Parent=Msa0929460-mRNA-1
chr6_2 exon 77400470 77400998 77400470 ID=Msa0929460-mRNA-1:exon:13088;Parent=Msa0929460-mRNA-1
chr6_2 five_prime_UTR 77399152 77399171 77399152 ID=Msa0929460-mRNA-1:five_prime_utr;Parent=Msa0929460-mRNA-1
chr6_2 CDS 77399172 77400036 77399172 ID=Msa0929460-mRNA-1:cds;Parent=Msa0929460-mRNA-1
chr6_2 CDS 77400470 77400522 77400470 ID=Msa0929460-mRNA-1:cds;Parent=Msa0929460-mRNA-1
chr6_2 three_prime_UTR 77400523 77400998 77400523 ID=Msa0929460-mRNA-1:three_prime_utr;Parent=Msa0929460-mRNA-1
Gene Sequence

>Msa0929460

ATGGCACTACCACCACTACTACCACCTCTTTCCACCCTCATCAACCTTTTCATGATTCTCATCTTAGCATCCACACCCACAGCCTCAACAACACTAACAGTGTGCCATGACACATGTGGCTCAATACAAGTCAAGTATCCCTTTGGCACAGGTCCTGGTTGCGGGTCCCCACTATTCAACCCATACATAACATGCACATCAAATGGAACAATAGACCAACTCATCCTCAAAACTCACACATCCTCATACCCTATAACCTCCATTTCATACACCACTTCCACTCTCACACTCACACCACCCTACATGTCTACTTGCACCACCATGCAAACGTCACCAAACTTTGGCATTGATTTAACTGCACCATTCCAAATATCTTCATCCACTTTCATCCTCCTCTCTTGCCAAGAAAAGAGTTCAACCATTTGTGACACTTCTTTTGATTACCTTTGTGCTTCTCTTTACTCTTGCCCTCAAGTAGTCTCACTTGGTATGCCTCTTTTTTCTCCTACTAACACATGTTGTGTATACTCACCGGGGAACCTAGACGGCAAAGGGGAGTTGAATCTTAGAGAGAATGATTGTAGTGGTTATACTTCGGTTGTGTCACTTGGTGATAACCCTACTGATCCTACTCATTGGGTTTATGGAGTGGCATTGAAATATACTCATGGTGCTTTTGATAACTTTGCAACCACTAAATGTACTAGTTGTGAGAGTAGTGGTGGTGTATGTGGATATGCTCCTCCAGGAAGTGGATTTGTTTGTGTTTGTAAAGGTGGATATAATACTAGCCTTGATTGCTCTAATTACGATCAAAACCAAGATTTCCTTTGGGACTCTATCTCTCCTCCTCCCATGTACAACATTGGGAATGTCTGGAGTTCCATCTTGGCTGGTATCATTTTCAGCCTAGTGTAA
Protein sequence

>Msa0929460

MALPPLLPPLSTLINLFMILILASTPTASTTLTVCHDTCGSIQVKYPFGTGPGCGSPLFNPYITCTSNGTIDQLILKTHTSSYPITSISYTTSTLTLTPPYMSTCTTMQTSPNFGIDLTAPFQISSSTFILLSCQEKSSTICDTSFDYLCASLYSCPQVVSLGMPLFSPTNTCCVYSPGNLDGKGELNLRENDCSGYTSVVSLGDNPTDPTHWVYGVALKYTHGAFDNFATTKCTSCESSGGVCGYAPPGSGFVCVCKGGYNTSLDCSNYDQNQDFLWDSISPPPMYNIGNVWSSILAGIIFSLV*