AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578380 MtrunA17_Chr8g0381971 93.056 288 15 2 1 288 1 283 0.0 529
Msa0578380 MtrunA17_Chr5g0415341 38.489 278 139 8 5 267 6 266 2.70e-53 176
Msa0578380 MtrunA17_Chr4g0058901 29.286 280 157 12 13 267 12 275 5.69e-26 104
Msa0578380 MtrunA17_Chr4g0069121 28.112 249 154 8 31 268 30 264 3.05e-22 94.4
Msa0578380 MtrunA17_Chr4g0075211 27.985 268 147 11 33 274 36 283 1.09e-21 93.6
Msa0578380 MtrunA17_Chr2g0288891 28.000 275 150 13 27 274 16 269 3.00e-19 86.3
Msa0578380 MtrunA17_Chr3g0112391 27.451 255 143 14 39 282 31 254 4.38e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578380 AT1G10380.1 40.964 249 126 6 34 267 28 270 1.62e-45 156
Msa0578380 AT1G10380.2 40.964 249 126 6 34 267 28 270 3.50e-45 155
Msa0578380 AT3G17350.2 29.304 273 162 10 16 270 12 271 4.84e-22 94.0
Msa0578380 AT1G11915.1 29.682 283 152 13 7 260 1 265 9.68e-22 94.0
Msa0578380 AT3G17350.1 29.167 264 157 9 16 262 12 262 1.06e-20 90.5
Msa0578380 AT5G50290.1 28.000 275 161 12 18 267 4 266 1.71e-20 90.1

Find 112 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTACTCATTGGGTTTA+TGG 0.115730 4_1:-82919325 Msa0578380:CDS
TGAAAGTGGATGAAGATATT+TGG 0.257191 4_1:+82919584 None:intergenic
TTGGCACAGGTCCTGGTTGC+GGG 0.266168 4_1:-82919807 Msa0578380:CDS
GTGTATGAAATGGAGGTTAT+AGG 0.283646 4_1:+82919700 None:intergenic
TGCGTCAAAGCTTCCACTTT+TGG 0.298303 4_1:-82918238 Msa0578380:three_prime_UTR
CTCACAACTAGTACATTTAG+TGG 0.331784 4_1:+82919258 None:intergenic
ATCAAAACCAAGATTTCCTT+TGG 0.338876 4_1:-82919138 Msa0578380:CDS
TTTGATGTGCATGTTATGTA+TGG 0.363083 4_1:+82919769 None:intergenic
GTTAAATCAATGCCAAAGTT+TGG 0.363622 4_1:+82919616 None:intergenic
TACATAACATGCACATCAAA+TGG 0.388250 4_1:-82919766 Msa0578380:CDS
CGGGGAACCTAGACGGCAAA+GGG 0.391013 4_1:-82919417 Msa0578380:CDS
TTTGGCACAGGTCCTGGTTG+CGG 0.395015 4_1:-82919808 Msa0578380:CDS
ACACAAACAAATCCACTTCC+TGG 0.398611 4_1:+82919205 None:intergenic
TCAACTCCCCTTTGCCGTCT+AGG 0.402495 4_1:+82919410 None:intergenic
TAGAGTCCCAAAGGAAATCT+TGG 0.407259 4_1:+82919131 None:intergenic
TATCCCTTTGGCACAGGTCC+TGG 0.410285 4_1:-82919814 Msa0578380:CDS
GGCAGTCAGTGCACAAAGCT+CGG 0.415721 4_1:-82918374 Msa0578380:three_prime_UTR
GATCGTAATTAGAGCAATCA+AGG 0.418096 4_1:+82919158 None:intergenic
CCCTACTGATCCTACTCATT+GGG 0.420444 4_1:-82919332 Msa0578380:CDS
GCTCGGGCATACGCAGGGTC+TGG 0.421720 4_1:-82918357 Msa0578380:three_prime_UTR
GTTATGTATGGGTTGAATAG+TGG 0.421768 4_1:+82919781 None:intergenic
GAATGTCTGGAGTTCCATCT+TGG 0.421862 4_1:-82918647 Msa0578380:CDS
TGTATGAAATGGAGGTTATA+GGG 0.425846 4_1:+82919701 None:intergenic
TGTTGTTGAGGCTGTGGGTG+TGG 0.432596 4_1:+82919879 None:intergenic
TATACACAACATGTGTTAGT+AGG 0.444066 4_1:+82919445 None:intergenic
TATGAACAGTTGGGAATGTC+TGG 0.453180 4_1:-82918660 Msa0578380:intron
ACCCTACTGATCCTACTCAT+TGG 0.456155 4_1:-82919333 Msa0578380:CDS
TTTGTTTGTGTTTGTAAAGG+TGG 0.459550 4_1:-82919193 Msa0578380:CDS
AATGGAGGTTATAGGGTATG+AGG 0.466527 4_1:+82919708 None:intergenic
TCAAAACCAAGATTTCCTTT+GGG 0.473584 4_1:-82919137 Msa0578380:CDS
AGATAACAATACACCAAAAG+TGG 0.476574 4_1:+82918225 None:intergenic
TGTTAGTGTTGTTGAGGCTG+TGG 0.477766 4_1:+82919873 None:intergenic
GTCTGGAGTTCCATCTTGGC+TGG 0.482605 4_1:-82918643 Msa0578380:CDS
CACAAAGCTCGGGCATACGC+AGG 0.489024 4_1:-82918363 Msa0578380:three_prime_UTR
ATGCAAACGTCACCAAACTT+TGG 0.492190 4_1:-82919628 Msa0578380:CDS
ATACAAGTCAAGTATCCCTT+TGG 0.494214 4_1:-82919826 Msa0578380:CDS
GCAGTCAGTGCACAAAGCTC+GGG 0.496072 4_1:-82918373 Msa0578380:three_prime_UTR
CCGGGGAACCTAGACGGCAA+AGG 0.496288 4_1:-82919418 Msa0578380:CDS
GTTGTGTACAATACATCAAA+TGG 0.496946 4_1:+82918323 None:intergenic
CACATGTTGTGTATACTCAC+CGG 0.497181 4_1:-82919437 Msa0578380:CDS
ATCAAAAGAAGTGTCACAAA+TGG 0.498238 4_1:+82919531 None:intergenic
CCTTTGCCGTCTAGGTTCCC+CGG 0.498477 4_1:+82919418 None:intergenic
TATTCAACATCAATATGTAA+TGG 0.500190 4_1:+82918167 None:intergenic
GTGGAAAGAGGTGGTAGTAG+TGG 0.501478 4_1:+82919937 None:intergenic
TGTGAGTGTGAGAGTGGAAG+TGG 0.506008 4_1:+82919678 None:intergenic
CTAAGATGAGAATCATGAAA+AGG 0.513752 4_1:+82919905 None:intergenic
GGGTGGTGTGAGTGTGAGAG+TGG 0.515614 4_1:+82919672 None:intergenic
TAATCGGATGATAATGCTGC+TGG 0.516924 4_1:-82918601 Msa0578380:three_prime_UTR
TACACTAGACTAGACTTCAT+AGG 0.517749 4_1:+82918448 None:intergenic
GTTAGTGTTGTTGAGGCTGT+GGG 0.518223 4_1:+82919874 None:intergenic
TATACTTCGGTTGTGTCACT+TGG 0.519729 4_1:-82919361 Msa0578380:CDS
AGTGGAAGTGGTGTATGAAA+TGG 0.521135 4_1:+82919690 None:intergenic
GAAAATGATACCAGCCAAGA+TGG 0.521207 4_1:+82918633 None:intergenic
GGATATGCTCCTCCAGGAAG+TGG 0.522288 4_1:-82919217 Msa0578380:CDS
AATAGTGGGGACCCGCAACC+AGG 0.526866 4_1:+82919796 None:intergenic
AGTAGTGGTGGTAGTGCCAT+TGG 0.534426 4_1:+82919952 None:intergenic
GGATTTGTTTGTGTTTGTAA+AGG 0.540887 4_1:-82919196 Msa0578380:CDS
GCAACCAGGACCTGTGCCAA+AGG 0.541377 4_1:+82919810 None:intergenic
AAGTGGAAGCTTTGACGCAA+AGG 0.544197 4_1:+82918242 None:intergenic
GCAAGAGAGGAGGATGAAAG+TGG 0.545372 4_1:+82919570 None:intergenic
GTCAAGTATCCCTTTGGCAC+AGG 0.545996 4_1:-82919820 Msa0578380:CDS
ACATGTTGTGTATACTCACC+GGG 0.550531 4_1:-82919436 Msa0578380:CDS
ACCCAATGAGTAGGATCAGT+AGG 0.552236 4_1:+82919331 None:intergenic
TGCCCTCAAGTAGTCTCACT+TGG 0.552797 4_1:-82919484 Msa0578380:CDS
GAGAGTAGTGGTGGTGTATG+TGG 0.555000 4_1:-82919238 Msa0578380:CDS
TACTCATTGGGTTTATGGAG+TGG 0.555908 4_1:-82919320 Msa0578380:CDS
CATGAAAAGGTTGATGAGGG+TGG 0.559660 4_1:+82919918 None:intergenic
CAACCAGGACCTGTGCCAAA+GGG 0.563262 4_1:+82919811 None:intergenic
TTGATGTGCATGTTATGTAT+GGG 0.566236 4_1:+82919770 None:intergenic
TAGACTAGACTTCATAGGAA+TGG 0.567381 4_1:+82918453 None:intergenic
TTATGTATGGGTTGAATAGT+GGG 0.567840 4_1:+82919782 None:intergenic
CATTATCATCCGATTACACT+AGG 0.569260 4_1:+82918608 None:intergenic
GGAAGTGGTGTATGAAATGG+AGG 0.572115 4_1:+82919693 None:intergenic
AAAGTTTGGTGACGTTTGCA+TGG 0.574117 4_1:+82919630 None:intergenic
GAAAGAGGTGGTAGTAGTGG+TGG 0.574477 4_1:+82919940 None:intergenic
CCCAATGAGTAGGATCAGTA+GGG 0.577746 4_1:+82919332 None:intergenic
GTATGTGGATATGCTCCTCC+AGG 0.583052 4_1:-82919223 Msa0578380:CDS
GAGGAGAGATAGAGTCCCAA+AGG 0.583741 4_1:+82919122 None:intergenic
TGATTGTAGTGGTTATACTT+CGG 0.584725 4_1:-82919374 Msa0578380:CDS
GGTGGTGCAAGTAGACATGT+AGG 0.584778 4_1:+82919651 None:intergenic
AGGTTGATGAGGGTGGAAAG+AGG 0.585956 4_1:+82919925 None:intergenic
GCACACTGTTAGTGTTGTTG+AGG 0.594642 4_1:+82919867 None:intergenic
TACCAAGTGAGACTACTTGA+GGG 0.596440 4_1:+82919482 None:intergenic
ATACCAAGTGAGACTACTTG+AGG 0.598463 4_1:+82919481 None:intergenic
GGCATACGCAGGGTCTGGAA+AGG 0.609211 4_1:-82918352 Msa0578380:three_prime_UTR
CTTAGAGAGAATGATTGTAG+TGG 0.610496 4_1:-82919385 Msa0578380:CDS
GTGGATGAAGATATTTGGAA+TGG 0.613981 4_1:+82919589 None:intergenic
TACTCACCGGGGAACCTAGA+CGG 0.615280 4_1:-82919424 Msa0578380:CDS
AACATACTGTTGTACATGGG+AGG 0.621855 4_1:+82919100 None:intergenic
ACTCCATAAACCCAATGAGT+AGG 0.626290 4_1:+82919322 None:intergenic
ACAAAGCTCGGGCATACGCA+GGG 0.627608 4_1:-82918362 Msa0578380:three_prime_UTR
GAATCATGAAAAGGTTGATG+AGG 0.631423 4_1:+82919914 None:intergenic
CTAACAGTTAAGTCATTCAG+AGG 0.631884 4_1:-82918560 Msa0578380:three_prime_UTR
TTGATGAGGGTGGAAAGAGG+TGG 0.635922 4_1:+82919928 None:intergenic
ATACTGTTGTACATGGGAGG+AGG 0.638228 4_1:+82919103 None:intergenic
AATCATGAAAAGGTTGATGA+GGG 0.650509 4_1:+82919915 None:intergenic
AAGAGTAAAGAGAAGCACAA+AGG 0.652408 4_1:+82919506 None:intergenic
TGGAACACAAGCAAAGCCAA+TGG 0.663304 4_1:-82919968 Msa0578380:exon
GTTTGGTGACGTTTGCATGG+TGG 0.670403 4_1:+82919633 None:intergenic
GTGGCATTGAAATATACTCA+TGG 0.674830 4_1:-82919301 Msa0578380:CDS
GTATTGAGCCACATGTGTCA+TGG 0.676021 4_1:+82919845 None:intergenic
AATCGGATGATAATGCTGCT+GGG 0.679814 4_1:-82918600 Msa0578380:three_prime_UTR
ACAGTTAAGTCATTCAGAGG+AGG 0.686509 4_1:-82918557 Msa0578380:three_prime_UTR
GGGGAACCTAGACGGCAAAG+GGG 0.692978 4_1:-82919416 Msa0578380:CDS
GTGGTGCAAGTAGACATGTA+GGG 0.696710 4_1:+82919652 None:intergenic
ACTAGTTGTGAGAGTAGTGG+TGG 0.700797 4_1:-82919247 Msa0578380:CDS
TGTACTAGTTGTGAGAGTAG+TGG 0.707622 4_1:-82919250 Msa0578380:CDS
TATGTATGGGTTGAATAGTG+GGG 0.729462 4_1:+82919783 None:intergenic
GTGCAAGTAGACATGTAGGG+TGG 0.743146 4_1:+82919655 None:intergenic
CATGTTGTGTATACTCACCG+GGG 0.745636 4_1:-82919435 Msa0578380:CDS
ACAGTGTGCCATGACACATG+TGG 0.759996 4_1:-82919853 Msa0578380:CDS
CAAACAAATCCACTTCCTGG+AGG 0.785898 4_1:+82919208 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATAAGTAAGTAATT+AGG - chr4_1:82919149-82919168 Msa0578380:CDS 10.0%
!! TATATATAAGTAAGTAATTA+GGG - chr4_1:82919150-82919169 Msa0578380:CDS 10.0%
!! TTATATATAAGTAAGTAATT+AGG - chr4_1:82919149-82919168 Msa0578380:CDS 10.0%
!! TATATATAAGTAAGTAATTA+GGG - chr4_1:82919150-82919169 Msa0578380:CDS 10.0%
!! ATATATAAGTAAGTAATTAG+GGG - chr4_1:82919151-82919170 Msa0578380:CDS 15.0%
!! TGTATTGTCAAAAAAATAAA+AGG - chr4_1:82919720-82919739 Msa0578380:CDS 15.0%
!! GTATTGTCAAAAAAATAAAA+GGG - chr4_1:82919721-82919740 Msa0578380:CDS 15.0%
!! TAACAAAAAAAACTATCTTT+AGG - chr4_1:82919970-82919989 Msa0578380:exon 15.0%
!! ATATATAAGTAAGTAATTAG+GGG - chr4_1:82919151-82919170 Msa0578380:CDS 15.0%
!! TGTATTGTCAAAAAAATAAA+AGG - chr4_1:82919720-82919739 Msa0578380:CDS 15.0%
!! GTATTGTCAAAAAAATAAAA+GGG - chr4_1:82919721-82919740 Msa0578380:CDS 15.0%
!!! GTCTTTTTTAATTTTCATAC+AGG - chr4_1:82919117-82919136 Msa0578380:CDS 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG - chr4_1:82919622-82919641 Msa0578380:CDS 20.0%
!!! TTTTTTTTTTTGTACAAGTC+TGG - chr4_1:82919697-82919716 Msa0578380:CDS 20.0%
!! TCTGTAAAAAAAAAATTGCA+TGG - chr4_1:82919913-82919932 Msa0578380:CDS 20.0%
!! TATTCAACATCAATATGTAA+TGG + chr4_1:82919952-82919971 None:intergenic 20.0%
!!! GTCTTTTTTAATTTTCATAC+AGG - chr4_1:82919117-82919136 Msa0578380:CDS 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG - chr4_1:82919622-82919641 Msa0578380:CDS 20.0%
!!! TTTTTTTTTTTGTACAAGTC+TGG - chr4_1:82919697-82919716 Msa0578380:CDS 20.0%
!! TCTGTAAAAAAAAAATTGCA+TGG - chr4_1:82919913-82919932 Msa0578380:CDS 20.0%
!! TATTCAACATCAATATGTAA+TGG + chr4_1:82919952-82919971 None:intergenic 20.0%
!!! AAATGGTTGAACTTTTTTCT+TGG + chr4_1:82918571-82918590 None:intergenic 25.0%
! AAAAACATACTGTTGTACAT+GGG + chr4_1:82919022-82919041 None:intergenic 25.0%
! AAAGAAACAACAAAAAGAGA+AGG + chr4_1:82919045-82919064 None:intergenic 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG - chr4_1:82919230-82919249 Msa0578380:CDS 25.0%
! CAAGAAAAAGGAAAAATAGA+TGG - chr4_1:82919242-82919261 Msa0578380:CDS 25.0%
! AAAAAGGAAAAATAGATGGT+TGG - chr4_1:82919246-82919265 Msa0578380:CDS 25.0%
! AAAACAATATGCCAAAGTAA+TGG - chr4_1:82919311-82919330 Msa0578380:CDS 25.0%
! AAACAATATGCCAAAGTAAT+GGG - chr4_1:82919312-82919331 Msa0578380:CDS 25.0%
! ATAATAGTTACCCATTACTT+TGG + chr4_1:82919325-82919344 None:intergenic 25.0%
! TATTATTCTGTACACTTGAA+AGG - chr4_1:82919339-82919358 Msa0578380:CDS 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG - chr4_1:82919385-82919404 Msa0578380:CDS 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG + chr4_1:82919595-82919614 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG + chr4_1:82919618-82919637 None:intergenic 25.0%
!!! AAATGGTTGAACTTTTTTCT+TGG + chr4_1:82918571-82918590 None:intergenic 25.0%
! AAAAACATACTGTTGTACAT+GGG + chr4_1:82919022-82919041 None:intergenic 25.0%
! AAAGAAACAACAAAAAGAGA+AGG + chr4_1:82919045-82919064 None:intergenic 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG - chr4_1:82919230-82919249 Msa0578380:CDS 25.0%
! CAAGAAAAAGGAAAAATAGA+TGG - chr4_1:82919242-82919261 Msa0578380:CDS 25.0%
! AAAAAGGAAAAATAGATGGT+TGG - chr4_1:82919246-82919265 Msa0578380:CDS 25.0%
! AAAACAATATGCCAAAGTAA+TGG - chr4_1:82919311-82919330 Msa0578380:CDS 25.0%
! AAACAATATGCCAAAGTAAT+GGG - chr4_1:82919312-82919331 Msa0578380:CDS 25.0%
! ATAATAGTTACCCATTACTT+TGG + chr4_1:82919325-82919344 None:intergenic 25.0%
! TATTATTCTGTACACTTGAA+AGG - chr4_1:82919339-82919358 Msa0578380:CDS 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG - chr4_1:82919385-82919404 Msa0578380:CDS 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG + chr4_1:82919595-82919614 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG + chr4_1:82919618-82919637 None:intergenic 25.0%
!! AATCATGAAAAGGTTGATGA+GGG + chr4_1:82918204-82918223 None:intergenic 30.0%
CTAAGATGAGAATCATGAAA+AGG + chr4_1:82918214-82918233 None:intergenic 30.0%
! TTATGTATGGGTTGAATAGT+GGG + chr4_1:82918337-82918356 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG + chr4_1:82918349-82918368 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG + chr4_1:82918350-82918369 None:intergenic 30.0%
TACATAACATGCACATCAAA+TGG - chr4_1:82918350-82918369 Msa0578380:three_prime_UTR 30.0%
TGTATGAAATGGAGGTTATA+GGG + chr4_1:82918418-82918437 None:intergenic 30.0%
GTTAAATCAATGCCAAAGTT+TGG + chr4_1:82918503-82918522 None:intergenic 30.0%
TGAAAGTGGATGAAGATATT+TGG + chr4_1:82918535-82918554 None:intergenic 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG + chr4_1:82918588-82918607 None:intergenic 30.0%
TATACACAACATGTGTTAGT+AGG + chr4_1:82918674-82918693 None:intergenic 30.0%
TGATTGTAGTGGTTATACTT+CGG - chr4_1:82918742-82918761 Msa0578380:intron 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG - chr4_1:82918920-82918939 Msa0578380:intron 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG - chr4_1:82918923-82918942 Msa0578380:intron 30.0%
ATCAAAACCAAGATTTCCTT+TGG - chr4_1:82918978-82918997 Msa0578380:intron 30.0%
TCAAAACCAAGATTTCCTTT+GGG - chr4_1:82918979-82918998 Msa0578380:intron 30.0%
GAAAAACATACTGTTGTACA+TGG + chr4_1:82919023-82919042 None:intergenic 30.0%
! TTTACATTCCCCATAGTTTT+CGG - chr4_1:82919094-82919113 Msa0578380:intron 30.0%
AAAAAAGACCCGAAAACTAT+GGG + chr4_1:82919106-82919125 None:intergenic 30.0%
TAAAAAAGACCCGAAAACTA+TGG + chr4_1:82919107-82919126 None:intergenic 30.0%
GAAATGAGTCAAATGACTAT+TGG - chr4_1:82919173-82919192 Msa0578380:CDS 30.0%
GTTGTGTACAATACATCAAA+TGG + chr4_1:82919796-82919815 None:intergenic 30.0%
!!! CACAACTTTACCTTGTTTTT+AGG - chr4_1:82919810-82919829 Msa0578380:CDS 30.0%
AGATAACAATACACCAAAAG+TGG + chr4_1:82919894-82919913 None:intergenic 30.0%
!! AATCATGAAAAGGTTGATGA+GGG + chr4_1:82918204-82918223 None:intergenic 30.0%
CTAAGATGAGAATCATGAAA+AGG + chr4_1:82918214-82918233 None:intergenic 30.0%
! TTATGTATGGGTTGAATAGT+GGG + chr4_1:82918337-82918356 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG + chr4_1:82918349-82918368 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG + chr4_1:82918350-82918369 None:intergenic 30.0%
TACATAACATGCACATCAAA+TGG - chr4_1:82918350-82918369 Msa0578380:three_prime_UTR 30.0%
TGTATGAAATGGAGGTTATA+GGG + chr4_1:82918418-82918437 None:intergenic 30.0%
GTTAAATCAATGCCAAAGTT+TGG + chr4_1:82918503-82918522 None:intergenic 30.0%
TGAAAGTGGATGAAGATATT+TGG + chr4_1:82918535-82918554 None:intergenic 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG + chr4_1:82918588-82918607 None:intergenic 30.0%
TATACACAACATGTGTTAGT+AGG + chr4_1:82918674-82918693 None:intergenic 30.0%
TGATTGTAGTGGTTATACTT+CGG - chr4_1:82918742-82918761 Msa0578380:intron 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG - chr4_1:82918920-82918939 Msa0578380:intron 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG - chr4_1:82918923-82918942 Msa0578380:intron 30.0%
ATCAAAACCAAGATTTCCTT+TGG - chr4_1:82918978-82918997 Msa0578380:intron 30.0%
TCAAAACCAAGATTTCCTTT+GGG - chr4_1:82918979-82918998 Msa0578380:intron 30.0%
GAAAAACATACTGTTGTACA+TGG + chr4_1:82919023-82919042 None:intergenic 30.0%
! TTTACATTCCCCATAGTTTT+CGG - chr4_1:82919094-82919113 Msa0578380:intron 30.0%
AAAAAAGACCCGAAAACTAT+GGG + chr4_1:82919106-82919125 None:intergenic 30.0%
TAAAAAAGACCCGAAAACTA+TGG + chr4_1:82919107-82919126 None:intergenic 30.0%
GAAATGAGTCAAATGACTAT+TGG - chr4_1:82919173-82919192 Msa0578380:CDS 30.0%
GTTGTGTACAATACATCAAA+TGG + chr4_1:82919796-82919815 None:intergenic 30.0%
!!! CACAACTTTACCTTGTTTTT+AGG - chr4_1:82919810-82919829 Msa0578380:CDS 30.0%
AGATAACAATACACCAAAAG+TGG + chr4_1:82919894-82919913 None:intergenic 30.0%
!! GAATCATGAAAAGGTTGATG+AGG + chr4_1:82918205-82918224 None:intergenic 35.0%
ATACAAGTCAAGTATCCCTT+TGG - chr4_1:82918290-82918309 Msa0578380:three_prime_UTR 35.0%
! TATGTATGGGTTGAATAGTG+GGG + chr4_1:82918336-82918355 None:intergenic 35.0%
! GTTATGTATGGGTTGAATAG+TGG + chr4_1:82918338-82918357 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG + chr4_1:82918419-82918438 None:intergenic 35.0%
GTGGATGAAGATATTTGGAA+TGG + chr4_1:82918530-82918549 None:intergenic 35.0%
!!! AACTTTTTTCTTGGCAAGAG+AGG + chr4_1:82918562-82918581 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG + chr4_1:82918613-82918632 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG + chr4_1:82918662-82918681 None:intergenic 35.0%
CTTAGAGAGAATGATTGTAG+TGG - chr4_1:82918731-82918750 Msa0578380:intron 35.0%
! GTGGCATTGAAATATACTCA+TGG - chr4_1:82918815-82918834 Msa0578380:intron 35.0%
CTCACAACTAGTACATTTAG+TGG + chr4_1:82918861-82918880 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG + chr4_1:82918961-82918980 None:intergenic 35.0%
! TTACATTCCCCATAGTTTTC+GGG - chr4_1:82919095-82919114 Msa0578380:intron 35.0%
AAAAAGACCCGAAAACTATG+GGG + chr4_1:82919105-82919124 None:intergenic 35.0%
AAAAATAGATGGTTGGACGA+TGG - chr4_1:82919253-82919272 Msa0578380:CDS 35.0%
CTGTTCTGTTATGAACAGTT+GGG - chr4_1:82919447-82919466 Msa0578380:CDS 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG - chr4_1:82919499-82919518 Msa0578380:CDS 35.0%
CATTATCATCCGATTACACT+AGG + chr4_1:82919511-82919530 None:intergenic 35.0%
CTAACAGTTAAGTCATTCAG+AGG - chr4_1:82919556-82919575 Msa0578380:CDS 35.0%
TAGACTAGACTTCATAGGAA+TGG + chr4_1:82919666-82919685 None:intergenic 35.0%
TACACTAGACTAGACTTCAT+AGG + chr4_1:82919671-82919690 None:intergenic 35.0%
CAGTCTCTTACCTAAAAACA+AGG + chr4_1:82919823-82919842 None:intergenic 35.0%
!! GAATCATGAAAAGGTTGATG+AGG + chr4_1:82918205-82918224 None:intergenic 35.0%
ATACAAGTCAAGTATCCCTT+TGG - chr4_1:82918290-82918309 Msa0578380:three_prime_UTR 35.0%
! TATGTATGGGTTGAATAGTG+GGG + chr4_1:82918336-82918355 None:intergenic 35.0%
! GTTATGTATGGGTTGAATAG+TGG + chr4_1:82918338-82918357 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG + chr4_1:82918419-82918438 None:intergenic 35.0%
GTGGATGAAGATATTTGGAA+TGG + chr4_1:82918530-82918549 None:intergenic 35.0%
!!! AACTTTTTTCTTGGCAAGAG+AGG + chr4_1:82918562-82918581 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG + chr4_1:82918613-82918632 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG + chr4_1:82918662-82918681 None:intergenic 35.0%
CTTAGAGAGAATGATTGTAG+TGG - chr4_1:82918731-82918750 Msa0578380:intron 35.0%
! GTGGCATTGAAATATACTCA+TGG - chr4_1:82918815-82918834 Msa0578380:intron 35.0%
CTCACAACTAGTACATTTAG+TGG + chr4_1:82918861-82918880 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG + chr4_1:82918961-82918980 None:intergenic 35.0%
! TTACATTCCCCATAGTTTTC+GGG - chr4_1:82919095-82919114 Msa0578380:intron 35.0%
AAAAAGACCCGAAAACTATG+GGG + chr4_1:82919105-82919124 None:intergenic 35.0%
AAAAATAGATGGTTGGACGA+TGG - chr4_1:82919253-82919272 Msa0578380:CDS 35.0%
CTGTTCTGTTATGAACAGTT+GGG - chr4_1:82919447-82919466 Msa0578380:CDS 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG - chr4_1:82919499-82919518 Msa0578380:CDS 35.0%
CATTATCATCCGATTACACT+AGG + chr4_1:82919511-82919530 None:intergenic 35.0%
CTAACAGTTAAGTCATTCAG+AGG - chr4_1:82919556-82919575 Msa0578380:CDS 35.0%
TAGACTAGACTTCATAGGAA+TGG + chr4_1:82919666-82919685 None:intergenic 35.0%
TACACTAGACTAGACTTCAT+AGG + chr4_1:82919671-82919690 None:intergenic 35.0%
CAGTCTCTTACCTAAAAACA+AGG + chr4_1:82919823-82919842 None:intergenic 35.0%
!!! TGTGAGTTTTGAGGATGAGT+TGG + chr4_1:82918385-82918404 None:intergenic 40.0%
! ATGAGGATGTGTGAGTTTTG+AGG + chr4_1:82918394-82918413 None:intergenic 40.0%
AATGGAGGTTATAGGGTATG+AGG + chr4_1:82918411-82918430 None:intergenic 40.0%
AGTGGAAGTGGTGTATGAAA+TGG + chr4_1:82918429-82918448 None:intergenic 40.0%
!! AAAGTTTGGTGACGTTTGCA+TGG + chr4_1:82918489-82918508 None:intergenic 40.0%
ATGCAAACGTCACCAAACTT+TGG - chr4_1:82918488-82918507 Msa0578380:three_prime_UTR 40.0%
!!! TTTTTTCTTGGCAAGAGAGG+AGG + chr4_1:82918559-82918578 None:intergenic 40.0%
TACCAAGTGAGACTACTTGA+GGG + chr4_1:82918637-82918656 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG + chr4_1:82918638-82918657 None:intergenic 40.0%
CACATGTTGTGTATACTCAC+CGG - chr4_1:82918679-82918698 Msa0578380:intron 40.0%
ACATGTTGTGTATACTCACC+GGG - chr4_1:82918680-82918699 Msa0578380:intron 40.0%
! TATACTTCGGTTGTGTCACT+TGG - chr4_1:82918755-82918774 Msa0578380:intron 40.0%
GATCCTACTCATTGGGTTTA+TGG - chr4_1:82918791-82918810 Msa0578380:intron 40.0%
ACTCCATAAACCCAATGAGT+AGG + chr4_1:82918797-82918816 None:intergenic 40.0%
TACTCATTGGGTTTATGGAG+TGG - chr4_1:82918796-82918815 Msa0578380:intron 40.0%
TGTACTAGTTGTGAGAGTAG+TGG - chr4_1:82918866-82918885 Msa0578380:intron 40.0%
ACACAAACAAATCCACTTCC+TGG + chr4_1:82918914-82918933 None:intergenic 40.0%
TAGAGTCCCAAAGGAAATCT+TGG + chr4_1:82918988-82919007 None:intergenic 40.0%
AACATACTGTTGTACATGGG+AGG + chr4_1:82919019-82919038 None:intergenic 40.0%
CCAACTGTTCATAACAGAAC+AGG + chr4_1:82919449-82919468 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG - chr4_1:82919446-82919465 Msa0578380:CDS 40.0%
TATGAACAGTTGGGAATGTC+TGG - chr4_1:82919456-82919475 Msa0578380:CDS 40.0%
GAAAATGATACCAGCCAAGA+TGG + chr4_1:82919486-82919505 None:intergenic 40.0%
! TAATCGGATGATAATGCTGC+TGG - chr4_1:82919515-82919534 Msa0578380:CDS 40.0%
! AATCGGATGATAATGCTGCT+GGG - chr4_1:82919516-82919535 Msa0578380:CDS 40.0%
ACAGTTAAGTCATTCAGAGG+AGG - chr4_1:82919559-82919578 Msa0578380:CDS 40.0%
!!! TGTGAGTTTTGAGGATGAGT+TGG + chr4_1:82918385-82918404 None:intergenic 40.0%
! ATGAGGATGTGTGAGTTTTG+AGG + chr4_1:82918394-82918413 None:intergenic 40.0%
AATGGAGGTTATAGGGTATG+AGG + chr4_1:82918411-82918430 None:intergenic 40.0%
AGTGGAAGTGGTGTATGAAA+TGG + chr4_1:82918429-82918448 None:intergenic 40.0%
!! AAAGTTTGGTGACGTTTGCA+TGG + chr4_1:82918489-82918508 None:intergenic 40.0%
ATGCAAACGTCACCAAACTT+TGG - chr4_1:82918488-82918507 Msa0578380:three_prime_UTR 40.0%
!!! TTTTTTCTTGGCAAGAGAGG+AGG + chr4_1:82918559-82918578 None:intergenic 40.0%
TACCAAGTGAGACTACTTGA+GGG + chr4_1:82918637-82918656 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG + chr4_1:82918638-82918657 None:intergenic 40.0%
CACATGTTGTGTATACTCAC+CGG - chr4_1:82918679-82918698 Msa0578380:intron 40.0%
ACATGTTGTGTATACTCACC+GGG - chr4_1:82918680-82918699 Msa0578380:intron 40.0%
! TATACTTCGGTTGTGTCACT+TGG - chr4_1:82918755-82918774 Msa0578380:intron 40.0%
GATCCTACTCATTGGGTTTA+TGG - chr4_1:82918791-82918810 Msa0578380:intron 40.0%
ACTCCATAAACCCAATGAGT+AGG + chr4_1:82918797-82918816 None:intergenic 40.0%
TACTCATTGGGTTTATGGAG+TGG - chr4_1:82918796-82918815 Msa0578380:intron 40.0%
TGTACTAGTTGTGAGAGTAG+TGG - chr4_1:82918866-82918885 Msa0578380:intron 40.0%
ACACAAACAAATCCACTTCC+TGG + chr4_1:82918914-82918933 None:intergenic 40.0%
TAGAGTCCCAAAGGAAATCT+TGG + chr4_1:82918988-82919007 None:intergenic 40.0%
AACATACTGTTGTACATGGG+AGG + chr4_1:82919019-82919038 None:intergenic 40.0%
CCAACTGTTCATAACAGAAC+AGG + chr4_1:82919449-82919468 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG - chr4_1:82919446-82919465 Msa0578380:CDS 40.0%
TATGAACAGTTGGGAATGTC+TGG - chr4_1:82919456-82919475 Msa0578380:CDS 40.0%
GAAAATGATACCAGCCAAGA+TGG + chr4_1:82919486-82919505 None:intergenic 40.0%
! TAATCGGATGATAATGCTGC+TGG - chr4_1:82919515-82919534 Msa0578380:CDS 40.0%
! AATCGGATGATAATGCTGCT+GGG - chr4_1:82919516-82919535 Msa0578380:CDS 40.0%
ACAGTTAAGTCATTCAGAGG+AGG - chr4_1:82919559-82919578 Msa0578380:CDS 40.0%
TGGAACACAAGCAAAGCCAA+TGG - chr4_1:82918148-82918167 Msa0578380:three_prime_UTR 45.0%
!! CATGAAAAGGTTGATGAGGG+TGG + chr4_1:82918201-82918220 None:intergenic 45.0%
! GTTAGTGTTGTTGAGGCTGT+GGG + chr4_1:82918245-82918264 None:intergenic 45.0%
! TGTTAGTGTTGTTGAGGCTG+TGG + chr4_1:82918246-82918265 None:intergenic 45.0%
! GCACACTGTTAGTGTTGTTG+AGG + chr4_1:82918252-82918271 None:intergenic 45.0%
GTATTGAGCCACATGTGTCA+TGG + chr4_1:82918274-82918293 None:intergenic 45.0%
GGAAGTGGTGTATGAAATGG+AGG + chr4_1:82918426-82918445 None:intergenic 45.0%
GTGGTGCAAGTAGACATGTA+GGG + chr4_1:82918467-82918486 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG - chr4_1:82918681-82918700 Msa0578380:intron 45.0%
ACCCTACTGATCCTACTCAT+TGG - chr4_1:82918783-82918802 Msa0578380:intron 45.0%
CCCAATGAGTAGGATCAGTA+GGG + chr4_1:82918787-82918806 None:intergenic 45.0%
CCCTACTGATCCTACTCATT+GGG - chr4_1:82918784-82918803 Msa0578380:intron 45.0%
ACCCAATGAGTAGGATCAGT+AGG + chr4_1:82918788-82918807 None:intergenic 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG - chr4_1:82918869-82918888 Msa0578380:intron 45.0%
CAAACAAATCCACTTCCTGG+AGG + chr4_1:82918911-82918930 None:intergenic 45.0%
ATACTGTTGTACATGGGAGG+AGG + chr4_1:82919016-82919035 None:intergenic 45.0%
! GAATGTCTGGAGTTCCATCT+TGG - chr4_1:82919469-82919488 Msa0578380:CDS 45.0%
! AAGTGGAAGCTTTGACGCAA+AGG + chr4_1:82919877-82919896 None:intergenic 45.0%
! TGCGTCAAAGCTTCCACTTT+TGG - chr4_1:82919878-82919897 Msa0578380:CDS 45.0%
TGGAACACAAGCAAAGCCAA+TGG - chr4_1:82918148-82918167 Msa0578380:three_prime_UTR 45.0%
!! CATGAAAAGGTTGATGAGGG+TGG + chr4_1:82918201-82918220 None:intergenic 45.0%
! GTTAGTGTTGTTGAGGCTGT+GGG + chr4_1:82918245-82918264 None:intergenic 45.0%
! TGTTAGTGTTGTTGAGGCTG+TGG + chr4_1:82918246-82918265 None:intergenic 45.0%
! GCACACTGTTAGTGTTGTTG+AGG + chr4_1:82918252-82918271 None:intergenic 45.0%
GTATTGAGCCACATGTGTCA+TGG + chr4_1:82918274-82918293 None:intergenic 45.0%
GGAAGTGGTGTATGAAATGG+AGG + chr4_1:82918426-82918445 None:intergenic 45.0%
GTGGTGCAAGTAGACATGTA+GGG + chr4_1:82918467-82918486 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG - chr4_1:82918681-82918700 Msa0578380:intron 45.0%
ACCCTACTGATCCTACTCAT+TGG - chr4_1:82918783-82918802 Msa0578380:intron 45.0%
CCCAATGAGTAGGATCAGTA+GGG + chr4_1:82918787-82918806 None:intergenic 45.0%
CCCTACTGATCCTACTCATT+GGG - chr4_1:82918784-82918803 Msa0578380:intron 45.0%
ACCCAATGAGTAGGATCAGT+AGG + chr4_1:82918788-82918807 None:intergenic 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG - chr4_1:82918869-82918888 Msa0578380:intron 45.0%
CAAACAAATCCACTTCCTGG+AGG + chr4_1:82918911-82918930 None:intergenic 45.0%
ATACTGTTGTACATGGGAGG+AGG + chr4_1:82919016-82919035 None:intergenic 45.0%
! GAATGTCTGGAGTTCCATCT+TGG - chr4_1:82919469-82919488 Msa0578380:CDS 45.0%
! AAGTGGAAGCTTTGACGCAA+AGG + chr4_1:82919877-82919896 None:intergenic 45.0%
! TGCGTCAAAGCTTCCACTTT+TGG - chr4_1:82919878-82919897 Msa0578380:CDS 45.0%
! AGTAGTGGTGGTAGTGCCAT+TGG + chr4_1:82918167-82918186 None:intergenic 50.0%
GAAAGAGGTGGTAGTAGTGG+TGG + chr4_1:82918179-82918198 None:intergenic 50.0%
GTGGAAAGAGGTGGTAGTAG+TGG + chr4_1:82918182-82918201 None:intergenic 50.0%
TTGATGAGGGTGGAAAGAGG+TGG + chr4_1:82918191-82918210 None:intergenic 50.0%
!! AGGTTGATGAGGGTGGAAAG+AGG + chr4_1:82918194-82918213 None:intergenic 50.0%
ACAGTGTGCCATGACACATG+TGG - chr4_1:82918263-82918282 Msa0578380:three_prime_UTR 50.0%
GTCAAGTATCCCTTTGGCAC+AGG - chr4_1:82918296-82918315 Msa0578380:three_prime_UTR 50.0%
TGTGAGTGTGAGAGTGGAAG+TGG + chr4_1:82918441-82918460 None:intergenic 50.0%
GTGCAAGTAGACATGTAGGG+TGG + chr4_1:82918464-82918483 None:intergenic 50.0%
GGTGGTGCAAGTAGACATGT+AGG + chr4_1:82918468-82918487 None:intergenic 50.0%
!! GTTTGGTGACGTTTGCATGG+TGG + chr4_1:82918486-82918505 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG + chr4_1:82918549-82918568 None:intergenic 50.0%
TGCCCTCAAGTAGTCTCACT+TGG - chr4_1:82918632-82918651 Msa0578380:CDS 50.0%
! GAGAGTAGTGGTGGTGTATG+TGG - chr4_1:82918878-82918897 Msa0578380:intron 50.0%
GTATGTGGATATGCTCCTCC+AGG - chr4_1:82918893-82918912 Msa0578380:intron 50.0%
GAGGAGAGATAGAGTCCCAA+AGG + chr4_1:82918997-82919016 None:intergenic 50.0%
! AGTAGTGGTGGTAGTGCCAT+TGG + chr4_1:82918167-82918186 None:intergenic 50.0%
GAAAGAGGTGGTAGTAGTGG+TGG + chr4_1:82918179-82918198 None:intergenic 50.0%
GTGGAAAGAGGTGGTAGTAG+TGG + chr4_1:82918182-82918201 None:intergenic 50.0%
TTGATGAGGGTGGAAAGAGG+TGG + chr4_1:82918191-82918210 None:intergenic 50.0%
!! AGGTTGATGAGGGTGGAAAG+AGG + chr4_1:82918194-82918213 None:intergenic 50.0%
ACAGTGTGCCATGACACATG+TGG - chr4_1:82918263-82918282 Msa0578380:three_prime_UTR 50.0%
GTCAAGTATCCCTTTGGCAC+AGG - chr4_1:82918296-82918315 Msa0578380:three_prime_UTR 50.0%
TGTGAGTGTGAGAGTGGAAG+TGG + chr4_1:82918441-82918460 None:intergenic 50.0%
GTGCAAGTAGACATGTAGGG+TGG + chr4_1:82918464-82918483 None:intergenic 50.0%
GGTGGTGCAAGTAGACATGT+AGG + chr4_1:82918468-82918487 None:intergenic 50.0%
!! GTTTGGTGACGTTTGCATGG+TGG + chr4_1:82918486-82918505 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG + chr4_1:82918549-82918568 None:intergenic 50.0%
TGCCCTCAAGTAGTCTCACT+TGG - chr4_1:82918632-82918651 Msa0578380:CDS 50.0%
! GAGAGTAGTGGTGGTGTATG+TGG - chr4_1:82918878-82918897 Msa0578380:intron 50.0%
GTATGTGGATATGCTCCTCC+AGG - chr4_1:82918893-82918912 Msa0578380:intron 50.0%
GAGGAGAGATAGAGTCCCAA+AGG + chr4_1:82918997-82919016 None:intergenic 50.0%
TGTTGTTGAGGCTGTGGGTG+TGG + chr4_1:82918240-82918259 None:intergenic 55.0%
TATCCCTTTGGCACAGGTCC+TGG - chr4_1:82918302-82918321 Msa0578380:three_prime_UTR 55.0%
CAACCAGGACCTGTGCCAAA+GGG + chr4_1:82918308-82918327 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG - chr4_1:82918308-82918327 Msa0578380:three_prime_UTR 55.0%
TACTCACCGGGGAACCTAGA+CGG - chr4_1:82918692-82918711 Msa0578380:intron 55.0%
TCAACTCCCCTTTGCCGTCT+AGG + chr4_1:82918709-82918728 None:intergenic 55.0%
GGATATGCTCCTCCAGGAAG+TGG - chr4_1:82918899-82918918 Msa0578380:intron 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG - chr4_1:82919473-82919492 Msa0578380:CDS 55.0%
GGCAGTCAGTGCACAAAGCT+CGG - chr4_1:82919742-82919761 Msa0578380:CDS 55.0%
GCAGTCAGTGCACAAAGCTC+GGG - chr4_1:82919743-82919762 Msa0578380:CDS 55.0%
ACAAAGCTCGGGCATACGCA+GGG - chr4_1:82919754-82919773 Msa0578380:CDS 55.0%
TGTTGTTGAGGCTGTGGGTG+TGG + chr4_1:82918240-82918259 None:intergenic 55.0%
TATCCCTTTGGCACAGGTCC+TGG - chr4_1:82918302-82918321 Msa0578380:three_prime_UTR 55.0%
CAACCAGGACCTGTGCCAAA+GGG + chr4_1:82918308-82918327 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG - chr4_1:82918308-82918327 Msa0578380:three_prime_UTR 55.0%
TACTCACCGGGGAACCTAGA+CGG - chr4_1:82918692-82918711 Msa0578380:intron 55.0%
TCAACTCCCCTTTGCCGTCT+AGG + chr4_1:82918709-82918728 None:intergenic 55.0%
GGATATGCTCCTCCAGGAAG+TGG - chr4_1:82918899-82918918 Msa0578380:intron 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG - chr4_1:82919473-82919492 Msa0578380:CDS 55.0%
GGCAGTCAGTGCACAAAGCT+CGG - chr4_1:82919742-82919761 Msa0578380:CDS 55.0%
GCAGTCAGTGCACAAAGCTC+GGG - chr4_1:82919743-82919762 Msa0578380:CDS 55.0%
ACAAAGCTCGGGCATACGCA+GGG - chr4_1:82919754-82919773 Msa0578380:CDS 55.0%
GCAACCAGGACCTGTGCCAA+AGG + chr4_1:82918309-82918328 None:intergenic 60.0%
TTGGCACAGGTCCTGGTTGC+GGG - chr4_1:82918309-82918328 Msa0578380:three_prime_UTR 60.0%
! AATAGTGGGGACCCGCAACC+AGG + chr4_1:82918323-82918342 None:intergenic 60.0%
GGGTGGTGTGAGTGTGAGAG+TGG + chr4_1:82918447-82918466 None:intergenic 60.0%
CCTTTGCCGTCTAGGTTCCC+CGG + chr4_1:82918701-82918720 None:intergenic 60.0%
CGGGGAACCTAGACGGCAAA+GGG - chr4_1:82918699-82918718 Msa0578380:intron 60.0%
GGGGAACCTAGACGGCAAAG+GGG - chr4_1:82918700-82918719 Msa0578380:intron 60.0%
CACAAAGCTCGGGCATACGC+AGG - chr4_1:82919753-82919772 Msa0578380:CDS 60.0%
GGCATACGCAGGGTCTGGAA+AGG - chr4_1:82919764-82919783 Msa0578380:CDS 60.0%
GCAACCAGGACCTGTGCCAA+AGG + chr4_1:82918309-82918328 None:intergenic 60.0%
TTGGCACAGGTCCTGGTTGC+GGG - chr4_1:82918309-82918328 Msa0578380:three_prime_UTR 60.0%
! AATAGTGGGGACCCGCAACC+AGG + chr4_1:82918323-82918342 None:intergenic 60.0%
GGGTGGTGTGAGTGTGAGAG+TGG + chr4_1:82918447-82918466 None:intergenic 60.0%
CCTTTGCCGTCTAGGTTCCC+CGG + chr4_1:82918701-82918720 None:intergenic 60.0%
CGGGGAACCTAGACGGCAAA+GGG - chr4_1:82918699-82918718 Msa0578380:intron 60.0%
GGGGAACCTAGACGGCAAAG+GGG - chr4_1:82918700-82918719 Msa0578380:intron 60.0%
CACAAAGCTCGGGCATACGC+AGG - chr4_1:82919753-82919772 Msa0578380:CDS 60.0%
GGCATACGCAGGGTCTGGAA+AGG - chr4_1:82919764-82919783 Msa0578380:CDS 60.0%
CCGGGGAACCTAGACGGCAA+AGG - chr4_1:82918698-82918717 Msa0578380:intron 65.0%
CCGGGGAACCTAGACGGCAA+AGG - chr4_1:82918698-82918717 Msa0578380:intron 65.0%
GCTCGGGCATACGCAGGGTC+TGG - chr4_1:82919759-82919778 Msa0578380:CDS 70.0%
GCTCGGGCATACGCAGGGTC+TGG - chr4_1:82919759-82919778 Msa0578380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 82918147 82919991 82918147 ID=Msa0578380;Name=Msa0578380
chr4_1 mRNA 82918147 82919991 82918147 ID=Msa0578380-mRNA-1;Parent=Msa0578380;Name=Msa0578380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=20|1|1|1|1|1|2|474|305
chr4_1 exon 82918147 82918673 82918147 ID=Msa0578380-mRNA-1:exon:30152;Parent=Msa0578380-mRNA-1
chr4_1 exon 82919107 82919991 82919107 ID=Msa0578380-mRNA-1:exon:30151;Parent=Msa0578380-mRNA-1
chr4_1 five_prime_UTR 82919972 82919991 82919972 ID=Msa0578380-mRNA-1:five_prime_utr;Parent=Msa0578380-mRNA-1
chr4_1 CDS 82919107 82919971 82919107 ID=Msa0578380-mRNA-1:cds;Parent=Msa0578380-mRNA-1
chr4_1 CDS 82918621 82918673 82918621 ID=Msa0578380-mRNA-1:cds;Parent=Msa0578380-mRNA-1
chr4_1 three_prime_UTR 82918147 82918620 82918147 ID=Msa0578380-mRNA-1:three_prime_utr;Parent=Msa0578380-mRNA-1
Gene Sequence

>Msa0578380

ATGGCACTACCACCACTACTACCACCTCTTTCCACCCTCATCAACCTTTTCATGATTCTCATCTTAGCATCCACACCCACAGCCTCAACAACACTAACAGTGTGCCATGACACATGTGGCTCAATACAAGTCAAGTATCCCTTTGGCACAGGTCCTGGTTGCGGGTCCCCACTATTCAACCCATACATAACATGCACATCAAATGGAACAATAGACCAACTCATCCTCAAAACTCACACATCCTCATACCCTATAACCTCCATTTCATACACCACTTCCACTCTCACACTCACACCACCCTACATGTCTACTTGCACCACCATGCAAACGTCACCAAACTTTGGCATTGATTTAACTGCACCATTCCAAATATCTTCATCCACTTTCATCCTCCTCTCTTGCCAAGAAAAAAGTTCAACCATTTGTGACACTTCTTTTGATTACCTTTGTGCTTCTCTTTACTCTTGCCCTCAAGTAGTCTCACTTGGTATGCCTCTTTTTTCTCCTACTAACACATGTTGTGTATACTCACCGGGGAACCTAGACGGCAAAGGGGAGTTGAATCTTAGAGAGAATGATTGTAGTGGTTATACTTCGGTTGTGTCACTTGGTGATAACCCTACTGATCCTACTCATTGGGTTTATGGAGTGGCATTGAAATATACTCATGGTGCTTTTGATAACTTTGCAACCACTAAATGTACTAGTTGTGAGAGTAGTGGTGGTGTATGTGGATATGCTCCTCCAGGAAGTGGATTTGTTTGTGTTTGTAAAGGTGGATATAATACTAGCCTTGATTGCTCTAATTACGATCAAAACCAAGATTTCCTTTGGGACTCTATCTCTCCTCCTCCCATGTACAACATTGGGAATGTCTGGAGTTCCATCTTGGCTGGTATCATTTTCAGCCTAGTGTAA
Protein sequence

>Msa0578380

MALPPLLPPLSTLINLFMILILASTPTASTTLTVCHDTCGSIQVKYPFGTGPGCGSPLFNPYITCTSNGTIDQLILKTHTSSYPITSISYTTSTLTLTPPYMSTCTTMQTSPNFGIDLTAPFQISSSTFILLSCQEKSSTICDTSFDYLCASLYSCPQVVSLGMPLFSPTNTCCVYSPGNLDGKGELNLRENDCSGYTSVVSLGDNPTDPTHWVYGVALKYTHGAFDNFATTKCTSCESSGGVCGYAPPGSGFVCVCKGGYNTSLDCSNYDQNQDFLWDSISPPPMYNIGNVWSSILAGIIFSLV*