AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0670120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0670120 MtrunA17_Chr4g0012671 87.446 231 15 1 1 217 1 231 3.55e-148 411
Msa0670120 MtrunA17_Chr2g0312491 87.387 222 13 2 1 208 1 221 1.17e-139 390
Msa0670120 MtrunA17_Chr2g0312501 95.181 83 4 0 1 83 1 83 7.08e-53 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0670120 AT1G12244.1 62.842 183 53 1 45 212 61 243 1.81e-68 210

Find 65 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTACAAAACTTCAAATTA+AGG 0.212601 4_4:+12214068 Msa0670120:three_prime_UTR
TCCTTGTAGTTCAAGATTCT+TGG 0.213325 4_4:-12213857 None:intergenic
GAAGCTGATGAGTTTATAAT+TGG 0.233134 4_4:+12211633 Msa0670120:CDS
TTCTTCCTCCGAAGCGCGTT+TGG 0.249873 4_4:-12209063 None:intergenic
TGAGAAATAATCATCATCTT+TGG 0.274796 4_4:-12213899 None:intergenic
GTATATCTACACGATGAATA+TGG 0.323530 4_4:+12212797 Msa0670120:CDS
TGTTAATCAACACAATGATT+TGG 0.342439 4_4:+12214031 Msa0670120:three_prime_UTR
ACACAATGATTTGGTGTGTT+TGG 0.346971 4_4:+12214040 Msa0670120:three_prime_UTR
GGTTAAATGTCGAAATTGTT+AGG 0.350048 4_4:+12214186 Msa0670120:three_prime_UTR
CCTTGTAGTTCAAGATTCTT+GGG 0.350745 4_4:-12213856 None:intergenic
TACTATTACATCAAAATAAA+CGG 0.354934 4_4:-12214126 None:intergenic
GTTTGGAAGTTGCGAGAAAA+TGG 0.366349 4_4:+12213993 Msa0670120:three_prime_UTR
TGTCAACAAAAGATCCTTGC+AGG 0.369006 4_4:-12214392 None:intergenic
TTGTGTGTATGAGTTTATAA+TGG 0.374548 4_4:+12214229 Msa0670120:three_prime_UTR
TCTAATTTCAAGTATGCGTT+TGG 0.385558 4_4:+12213976 Msa0670120:three_prime_UTR
GAGAAATAATCATCATCTTT+GGG 0.395248 4_4:-12213898 None:intergenic
CTTCTGCGATGTTCATTATC+CGG 0.402017 4_4:-12211508 None:intergenic
AACTTCCTCCAAACGCGCTT+CGG 0.404160 4_4:+12209055 Msa0670120:CDS
CATGTCGACCATTCGATCTA+TGG 0.407762 4_4:-12212834 None:intergenic
GAAGATTAATCACTTAATAA+AGG 0.409357 4_4:+12213925 Msa0670120:exon
GAGAGATATTTCTCCACATC+AGG 0.432417 4_4:+12213811 Msa0670120:CDS
TGGAGAGGTGGGTTCTCTCT+TGG 0.437334 4_4:+12209096 Msa0670120:CDS
TTCTCTCTTGGTGTCGACTT+AGG 0.437788 4_4:+12209108 Msa0670120:CDS
TACACACAAGTGGAGGTACC+TGG 0.447704 4_4:-12214215 None:intergenic
AAATTAGAAAACACGAATGA+TGG 0.464328 4_4:-12213961 None:intergenic
TCCTTTCCATCACAAGACTT+TGG 0.469405 4_4:-12211660 None:intergenic
CAAGTGGAGGTACCTGGGTC+CGG 0.481920 4_4:-12214209 None:intergenic
AAGAGTTTCAAGGGTGGCAC+TGG 0.486520 4_4:-12208940 None:intergenic
TCTAGAAGTCCTAGCTCAAC+TGG 0.487412 4_4:+12214165 Msa0670120:three_prime_UTR
AAATGAGTGCAAGAGTTTCA+AGG 0.491961 4_4:-12208950 None:intergenic
TATATCTACACGATGAATAT+GGG 0.495994 4_4:+12212798 Msa0670120:CDS
GACTTAGGAATGGCTCGTAC+TGG 0.498656 4_4:+12209123 Msa0670120:CDS
TTCCTCCGAAGCGCGTTTGG+AGG 0.506216 4_4:-12209060 None:intergenic
AAAGATGCAGAATGGAGAGG+TGG 0.518239 4_4:+12209084 Msa0670120:CDS
AAATGTCGAAATTGTTAGGC+CGG 0.519313 4_4:+12214190 Msa0670120:three_prime_UTR
ATCAATTTCTCTCTCTAATG+TGG 0.524500 4_4:+12208896 Msa0670120:intron
TCCAAAGTCTTGTGATGGAA+AGG 0.526441 4_4:+12211659 Msa0670120:CDS
AACTTCAAATTAAGGATGTG+TGG 0.527731 4_4:+12214076 Msa0670120:three_prime_UTR
GGACTTCCAAAGTCTTGTGA+TGG 0.537166 4_4:+12211654 Msa0670120:CDS
CCCAAGAATCTTGAACTACA+AGG 0.541911 4_4:+12213856 Msa0670120:CDS
GAGGACAGAAACTTGAGGTC+CGG 0.550595 4_4:+12211489 Msa0670120:CDS
ACTTCAAATTAAGGATGTGT+GGG 0.550996 4_4:+12214077 Msa0670120:three_prime_UTR
AATGAGTGCAAGAGTTTCAA+GGG 0.561769 4_4:-12208949 None:intergenic
GACATTTAACCAGTTGAGCT+AGG 0.563754 4_4:-12214174 None:intergenic
TTCCTCCAAACGCGCTTCGG+AGG 0.565039 4_4:+12209058 Msa0670120:CDS
TCTTGGTGTCGACTTAGGAA+TGG 0.573218 4_4:+12209113 Msa0670120:CDS
ACTGGCATTGCTCTCAGCAA+AGG 0.577358 4_4:+12209141 Msa0670120:CDS
GGAGGAAGAAAGATGCAGAA+TGG 0.578101 4_4:+12209076 Msa0670120:CDS
ATCAGCCGCCATAGATCGAA+TGG 0.579290 4_4:+12212826 Msa0670120:CDS
AATGAACATCGCAGAAGAAG+AGG 0.590370 4_4:+12211514 Msa0670120:CDS
AAGAAAGATGCAGAATGGAG+AGG 0.598221 4_4:+12209081 Msa0670120:CDS
AGGATTGTGTTCATTGACAC+TGG 0.604127 4_4:-12214372 None:intergenic
TATAAACTCATACACACAAG+TGG 0.609594 4_4:-12214225 None:intergenic
CTACAAGGAAAACTTAGAAG+TGG 0.611235 4_4:+12213871 Msa0670120:CDS
AAGATGCAGAATGGAGAGGT+GGG 0.613873 4_4:+12209085 Msa0670120:CDS
ACACACAAGTGGAGGTACCT+GGG 0.619960 4_4:-12214214 None:intergenic
GAAATTGTTAGGCCGGACCC+AGG 0.620471 4_4:+12214197 Msa0670120:three_prime_UTR
CAAGCCTTCCAGTAAAAGAA+CGG 0.630801 4_4:-12211704 None:intergenic
AAACTCATACACACAAGTGG+AGG 0.661757 4_4:-12214222 None:intergenic
TCAATGAACACAATCCTGCA+AGG 0.662441 4_4:+12214378 Msa0670120:three_prime_UTR
TTGCTAATCGAGCTGCTGAG+AGG 0.671815 4_4:+12211724 Msa0670120:CDS
AAATAATCATCATCTTTGGG+AGG 0.679374 4_4:-12213895 None:intergenic
GTCGACCATTCGATCTATGG+CGG 0.692504 4_4:-12212831 None:intergenic
ACTGCGAGGACAGAAACTTG+AGG 0.702953 4_4:+12211484 Msa0670120:CDS
GAGTGCAAGAGTTTCAAGGG+TGG 0.721147 4_4:-12208946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTCATTTTCTTATTT+TGG - chr4_4:12211807-12211826 None:intergenic 10.0%
!! AATAAGAAAATGAATAAAAA+AGG + chr4_4:12211808-12211827 Msa0670120:intron 10.0%
!! ATAAGAAAATGAATAAAAAA+GGG + chr4_4:12211809-12211828 Msa0670120:intron 10.0%
!! TTCTTCATAATTATTTATTA+TGG - chr4_4:12213123-12213142 None:intergenic 10.0%
!!! ATTTGAAATATCATATTTTT+AGG + chr4_4:12213490-12213509 Msa0670120:intron 10.0%
!!! TTTGAAATATCATATTTTTA+GGG + chr4_4:12213491-12213510 Msa0670120:intron 10.0%
!!! TTAATAAAAAAGAATGTTTT+TGG + chr4_4:12213687-12213706 Msa0670120:intron 10.0%
!!! TAATAAAAAAGAATGTTTTT+GGG + chr4_4:12213688-12213707 Msa0670120:intron 10.0%
!!! TTGAAAATTTTAATCAGTTA+GGG + chr4_4:12209669-12209688 Msa0670120:intron 15.0%
!!! TAAATTCAATTTTTTCATAG+AGG + chr4_4:12209834-12209853 Msa0670120:intron 15.0%
!! TTATTAGATAAAATCTATGT+AGG - chr4_4:12209970-12209989 None:intergenic 15.0%
!!! GTTTTACAAATTGATAATAA+AGG - chr4_4:12211077-12211096 None:intergenic 15.0%
!! CATTATTCTTAATTCTTATA+AGG + chr4_4:12212231-12212250 Msa0670120:intron 15.0%
!!! TATCAATAGATCATTATTTT+AGG - chr4_4:12212473-12212492 None:intergenic 15.0%
!!! TATATAGTTTAAAACCATTT+TGG + chr4_4:12213207-12213226 Msa0670120:intron 15.0%
!!! AAACAATTTTATATCCAAAA+TGG - chr4_4:12213224-12213243 None:intergenic 15.0%
!!! TAACATTTTTGAAAAAAATG+AGG + chr4_4:12213518-12213537 Msa0670120:intron 15.0%
!! TACTATTACATCAAAATAAA+CGG - chr4_4:12214129-12214148 None:intergenic 15.0%
!!! TTTTGATGTAATAGTAAAAA+TGG + chr4_4:12214133-12214152 Msa0670120:three_prime_UTR 15.0%
!!! ACATTAACTCTTTTCATATA+GGG + chr4_4:12209423-12209442 Msa0670120:intron 20.0%
!! ATAGTAAATAAGTATGTGTA+AGG + chr4_4:12209455-12209474 Msa0670120:intron 20.0%
!!! GTTGAAAATTTTAATCAGTT+AGG + chr4_4:12209668-12209687 Msa0670120:intron 20.0%
!! AAATGATGTTACAAAGTAAA+CGG - chr4_4:12210350-12210369 None:intergenic 20.0%
!! TTTCAATTATTACATGTAGA+TGG + chr4_4:12210368-12210387 Msa0670120:intron 20.0%
!! TGATAAAATAACATTAGTGA+AGG - chr4_4:12210567-12210586 None:intergenic 20.0%
!!! CACTAATGTTATTTTATCAA+TGG + chr4_4:12210568-12210587 Msa0670120:intron 20.0%
!! TTATCAATGGAAATAAAAAC+AGG + chr4_4:12210581-12210600 Msa0670120:intron 20.0%
!! ATTTAGACATATGTTTGAAT+TGG - chr4_4:12210686-12210705 None:intergenic 20.0%
!!! GTCAAAAGAGTATATAAAAA+AGG + chr4_4:12210740-12210759 Msa0670120:intron 20.0%
!! AAAGTAGATACACAATTATA+AGG - chr4_4:12211454-12211473 None:intergenic 20.0%
!! TATAATTGTGTATCTACTTT+AGG + chr4_4:12211454-12211473 Msa0670120:intron 20.0%
!!! TTTTTATGTTTGCGAATTAT+TGG - chr4_4:12211967-12211986 None:intergenic 20.0%
!! ACGAACAAAAGATAAAATAA+AGG + chr4_4:12212059-12212078 Msa0670120:intron 20.0%
!! AAGAATTAAGAATAATGACT+TGG - chr4_4:12212228-12212247 None:intergenic 20.0%
!! CTATTATCTTTATACTCTAA+TGG + chr4_4:12212401-12212420 Msa0670120:intron 20.0%
!!! AAAACTGGTTCTTATTTATA+AGG + chr4_4:12212569-12212588 Msa0670120:intron 20.0%
!! AAAGATAAATTAGAATTCTG+CGG - chr4_4:12213027-12213046 None:intergenic 20.0%
!!! ATTTTTGAAAAAAATGAGGA+AGG + chr4_4:12213522-12213541 Msa0670120:intron 20.0%
!!! TTTTTGAAAAAAATGAGGAA+GGG + chr4_4:12213523-12213542 Msa0670120:intron 20.0%
!! GAAGATTAATCACTTAATAA+AGG + chr4_4:12213925-12213944 Msa0670120:exon 20.0%
!!! CTTAATTTGAAGTTTTGTAA+TGG - chr4_4:12214070-12214089 None:intergenic 20.0%
!! CATTACAAAACTTCAAATTA+AGG + chr4_4:12214068-12214087 Msa0670120:three_prime_UTR 20.0%
!!! TCTTTTGTTGACATAATTAA+TGG + chr4_4:12214402-12214421 Msa0670120:three_prime_UTR 20.0%
!! TGAATTTTTGCATGATTTGA+AGG - chr4_4:12208979-12208998 None:intergenic 25.0%
!!! TAATGCTGTTTTTAGATTGT+GGG - chr4_4:12209025-12209044 None:intergenic 25.0%
!!! TTAATGCTGTTTTTAGATTG+TGG - chr4_4:12209026-12209045 None:intergenic 25.0%
! TCTAAAAACAGCATTAACTT+TGG + chr4_4:12209029-12209048 Msa0670120:CDS 25.0%
!!! AAAAGTGTTTTACCGTTAAA+GGG - chr4_4:12209179-12209198 None:intergenic 25.0%
!!! AAAAAGTGTTTTACCGTTAA+AGG - chr4_4:12209180-12209199 None:intergenic 25.0%
!!! GTTTGTTTTGTTGTTGTTTT+TGG + chr4_4:12209201-12209220 Msa0670120:intron 25.0%
!! TTTTTGGATATTCGTCATTT+TGG + chr4_4:12209217-12209236 Msa0670120:intron 25.0%
!! GACATTAACTCTTTTCATAT+AGG + chr4_4:12209422-12209441 Msa0670120:intron 25.0%
! ACTGAAACTAAAAAACAACA+GGG - chr4_4:12209650-12209669 None:intergenic 25.0%
! AACTGAAACTAAAAAACAAC+AGG - chr4_4:12209651-12209670 None:intergenic 25.0%
!! GATTTTATCTAATAAGAGAG+TGG + chr4_4:12209975-12209994 Msa0670120:intron 25.0%
! AGCATTTCACTTTATCAAAT+TGG + chr4_4:12210017-12210036 Msa0670120:intron 25.0%
! ATAAGATGAATAGAGTAGAA+TGG + chr4_4:12210302-12210321 Msa0670120:intron 25.0%
! AATGATGTTACAAAGTAAAC+GGG - chr4_4:12210349-12210368 None:intergenic 25.0%
! AATTATTACATGTAGATGGT+TGG + chr4_4:12210372-12210391 Msa0670120:intron 25.0%
! ACTGCAAAATGTTAAAACAT+TGG - chr4_4:12210488-12210507 None:intergenic 25.0%
!! TAACATTTTGCAGTATTTTC+AGG + chr4_4:12210494-12210513 Msa0670120:intron 25.0%
! ACATATGTTTGAATTGGTAA+TGG - chr4_4:12210680-12210699 None:intergenic 25.0%
! ACATATGTCTAAATGTGATT+TGG + chr4_4:12210692-12210711 Msa0670120:intron 25.0%
!! TGTATTGCAATTTTACCTTT+TGG - chr4_4:12210804-12210823 None:intergenic 25.0%
!!! GTTTTCTGTTTTGTTTTTCA+TGG - chr4_4:12210833-12210852 None:intergenic 25.0%
!! AATCTGAAGTAAATTGGATT+CGG - chr4_4:12211113-12211132 None:intergenic 25.0%
! CCTATAATTCAAAATCATCT+TGG - chr4_4:12211614-12211633 None:intergenic 25.0%
!! CCAAGATGATTTTGAATTAT+AGG + chr4_4:12211611-12211630 Msa0670120:intron 25.0%
! ATGAATAAAAAAGGGATGAA+TGG + chr4_4:12211817-12211836 Msa0670120:intron 25.0%
! ATAGATATTGAAGAATAGCA+AGG - chr4_4:12212285-12212304 None:intergenic 25.0%
!! AGTCCTTTAAGAATTCAAAA+TGG + chr4_4:12212427-12212446 Msa0670120:intron 25.0%
!! GAACCATTTTGAATTCTTAA+AGG - chr4_4:12212433-12212452 None:intergenic 25.0%
!!! TAGATCATTATTTTAGGATG+TGG - chr4_4:12212467-12212486 None:intergenic 25.0%
!! ACAAACTTGATTTTTCCTTT+CGG - chr4_4:12212634-12212653 None:intergenic 25.0%
! TCTGATGCTTATTTAGTATT+TGG + chr4_4:12212656-12212675 Msa0670120:intron 25.0%
! TATATCTACACGATGAATAT+GGG + chr4_4:12212798-12212817 Msa0670120:CDS 25.0%
!! TGGTAAAACACTTTTCTTTT+AGG - chr4_4:12213248-12213267 None:intergenic 25.0%
!!! ATTTCAAGTAACATTTTGTG+TGG + chr4_4:12213384-12213403 Msa0670120:intron 25.0%
! TATTTCAAATACACTTACCA+TGG - chr4_4:12213480-12213499 None:intergenic 25.0%
!! TGTTAATGACCATTTTACAA+TGG + chr4_4:12213570-12213589 Msa0670120:intron 25.0%
!! GATTTGAATTTTGTTCCTTT+AGG + chr4_4:12213603-12213622 Msa0670120:intron 25.0%
! GAGAAATAATCATCATCTTT+GGG - chr4_4:12213901-12213920 None:intergenic 25.0%
! TGAGAAATAATCATCATCTT+TGG - chr4_4:12213902-12213921 None:intergenic 25.0%
! AAATTAGAAAACACGAATGA+TGG - chr4_4:12213964-12213983 None:intergenic 25.0%
! TGTTAATCAACACAATGATT+TGG + chr4_4:12214031-12214050 Msa0670120:three_prime_UTR 25.0%
! GATGTAATAGTAAAAATGGT+AGG + chr4_4:12214137-12214156 Msa0670120:three_prime_UTR 25.0%
! TTGTGTGTATGAGTTTATAA+TGG + chr4_4:12214229-12214248 Msa0670120:three_prime_UTR 25.0%
!!! CCATTTTTTTTCTTTTTGGT+TGG - chr4_4:12214272-12214291 None:intergenic 25.0%
! CCAACCAAAAAGAAAAAAAA+TGG + chr4_4:12214269-12214288 Msa0670120:three_prime_UTR 25.0%
!!! CCTACCATTTTTTTTCTTTT+TGG - chr4_4:12214276-12214295 None:intergenic 25.0%
! CCAAAAAGAAAAAAAATGGT+AGG + chr4_4:12214273-12214292 Msa0670120:three_prime_UTR 25.0%
ATCAATTTCTCTCTCTAATG+TGG + chr4_4:12208896-12208915 Msa0670120:intron 30.0%
TCAAAGACTTCAATACATTG+AGG + chr4_4:12209576-12209595 Msa0670120:intron 30.0%
CAAAGACTTCAATACATTGA+GGG + chr4_4:12209577-12209596 Msa0670120:intron 30.0%
AAAGACTTCAATACATTGAG+GGG + chr4_4:12209578-12209597 Msa0670120:intron 30.0%
!!! TGTGATTTGGTACTATGTTT+TGG + chr4_4:12209693-12209712 Msa0670120:intron 30.0%
! GTTTGTCCATTTTGTAAACA+CGG + chr4_4:12209719-12209738 Msa0670120:intron 30.0%
TTACAACCGTGTTTACAAAA+TGG - chr4_4:12209728-12209747 None:intergenic 30.0%
TAAACACGGTTGTAAAATGT+AGG + chr4_4:12209733-12209752 Msa0670120:intron 30.0%
TCATATTGAAAAGACGTGTT+AGG + chr4_4:12209771-12209790 Msa0670120:intron 30.0%
!!! TTTTTTCATAGAGGAGTGTT+AGG + chr4_4:12209843-12209862 Msa0670120:intron 30.0%
! ACACATAGTTTGTATCCAAT+AGG - chr4_4:12209906-12209925 None:intergenic 30.0%
TGTATGTTCCCTAGTTAAAA+TGG - chr4_4:12210149-12210168 None:intergenic 30.0%
AACCAGTAATAATCTGATAC+AGG - chr4_4:12210211-12210230 None:intergenic 30.0%
TAGATGGTTGGAATTACATT+TGG + chr4_4:12210384-12210403 Msa0670120:intron 30.0%
TAATTGTGATAGAGAGAAGA+TGG + chr4_4:12210424-12210443 Msa0670120:intron 30.0%
AGAAGATGGAAGCTAATTAA+AGG + chr4_4:12210438-12210457 Msa0670120:intron 30.0%
! TAACATTAGTGAAGGCATAA+CGG - chr4_4:12210559-12210578 None:intergenic 30.0%
CAGGAAACACTAAAAGTAAA+CGG + chr4_4:12210600-12210619 Msa0670120:intron 30.0%
AGGAAACACTAAAAGTAAAC+GGG + chr4_4:12210601-12210620 Msa0670120:intron 30.0%
! TGCAATTTTACCTTTTGGAT+TGG - chr4_4:12210799-12210818 None:intergenic 30.0%
!! TCAAGCTTTGAATTGGAAAT+CGG - chr4_4:12211029-12211048 None:intergenic 30.0%
!! AATGTGTTCAAGCTTTGAAT+TGG - chr4_4:12211036-12211055 None:intergenic 30.0%
! CGCAAAAATCTGAAGTAAAT+TGG - chr4_4:12211119-12211138 None:intergenic 30.0%
ACATAGAACCTAATATGCAA+GGG - chr4_4:12211244-12211263 None:intergenic 30.0%
AACATAGAACCTAATATGCA+AGG - chr4_4:12211245-12211264 None:intergenic 30.0%
TGGTATGTAAGTTTAGTCAA+TGG + chr4_4:12211343-12211362 Msa0670120:intron 30.0%
! GTAAGTTTAGTCAATGGATT+TGG + chr4_4:12211349-12211368 Msa0670120:intron 30.0%
CATACTAAACAACAAAGACA+CGG - chr4_4:12211379-12211398 None:intergenic 30.0%
TTTGTGCGATGCTTAAAATT+CGG + chr4_4:12211554-12211573 Msa0670120:intron 30.0%
AATCATCTTGGTTATCTCTA+AGG - chr4_4:12211602-12211621 None:intergenic 30.0%
GAAGCTGATGAGTTTATAAT+TGG + chr4_4:12211633-12211652 Msa0670120:CDS 30.0%
TTGTCAACACTACATTACAA+TGG - chr4_4:12211754-12211773 None:intergenic 30.0%
! GAATTATTGGAGGTATATCT+CGG - chr4_4:12211954-12211973 None:intergenic 30.0%
TTATGTTTGCGAATTATTGG+AGG - chr4_4:12211964-12211983 None:intergenic 30.0%
TAGAGTTCTTAAAGCAAATG+CGG - chr4_4:12212384-12212403 None:intergenic 30.0%
!!! AACCAGTTGTGTTTTTAAGT+CGG - chr4_4:12212596-12212615 None:intergenic 30.0%
! TTATTTCTCGCACTTAATAG+AGG + chr4_4:12212694-12212713 Msa0670120:intron 30.0%
GTATATCTACACGATGAATA+TGG + chr4_4:12212797-12212816 Msa0670120:CDS 30.0%
ACAGTTCATATACTACATGA+AGG + chr4_4:12212926-12212945 Msa0670120:intron 30.0%
CAGTTCATATACTACATGAA+GGG + chr4_4:12212927-12212946 Msa0670120:intron 30.0%
TTTGAGGAAAAGATCCAATT+AGG - chr4_4:12212988-12213007 None:intergenic 30.0%
AGTTATAAAACGACACTTTG+AGG - chr4_4:12213004-12213023 None:intergenic 30.0%
TTATTTATTATGGACCATGC+AGG - chr4_4:12213113-12213132 None:intergenic 30.0%
!! TGAAGAAGTATGCATGATTT+TGG + chr4_4:12213136-12213155 Msa0670120:intron 30.0%
!! GAAGAAGTATGCATGATTTT+GGG + chr4_4:12213137-12213156 Msa0670120:intron 30.0%
ACACGCTTAAAATTCTTTCA+GGG + chr4_4:12213412-12213431 Msa0670120:intron 30.0%
! CATTTTACAATGGTCTCTAA+GGG + chr4_4:12213580-12213599 Msa0670120:intron 30.0%
! ATTTTACAATGGTCTCTAAG+GGG + chr4_4:12213581-12213600 Msa0670120:intron 30.0%
! TAATTGTCCTCTCTTTTCAT+TGG - chr4_4:12213748-12213767 None:intergenic 30.0%
ATGAAAAGAGAGGACAATTA+TGG + chr4_4:12213748-12213767 Msa0670120:intron 30.0%
AAATAATCATCATCTTTGGG+AGG - chr4_4:12213898-12213917 None:intergenic 30.0%
! TCTAATTTCAAGTATGCGTT+TGG + chr4_4:12213976-12213995 Msa0670120:three_prime_UTR 30.0%
AACTTCAAATTAAGGATGTG+TGG + chr4_4:12214076-12214095 Msa0670120:three_prime_UTR 30.0%
ACTTCAAATTAAGGATGTGT+GGG + chr4_4:12214077-12214096 Msa0670120:three_prime_UTR 30.0%
TGTGGGAAAAAAATGTCAAA+AGG + chr4_4:12214094-12214113 Msa0670120:three_prime_UTR 30.0%
GGTTAAATGTCGAAATTGTT+AGG + chr4_4:12214186-12214205 Msa0670120:three_prime_UTR 30.0%
TATAAACTCATACACACAAG+TGG - chr4_4:12214228-12214247 None:intergenic 30.0%
AATGAGTGCAAGAGTTTCAA+GGG - chr4_4:12208952-12208971 None:intergenic 35.0%
AAATGAGTGCAAGAGTTTCA+AGG - chr4_4:12208953-12208972 None:intergenic 35.0%
ACTAATGAAGTGCAGAATCA+GGG - chr4_4:12209244-12209263 None:intergenic 35.0%
TATACATTCAGGGACCAAAA+TGG + chr4_4:12209618-12209637 Msa0670120:intron 35.0%
AATCAGTTAGGGATGTGATT+TGG + chr4_4:12209680-12209699 Msa0670120:intron 35.0%
!! TCTAGCACTTGTTTTCCTAT+TGG + chr4_4:12209888-12209907 Msa0670120:intron 35.0%
AGCCTGTATCAGATTATTAC+TGG + chr4_4:12210206-12210225 Msa0670120:intron 35.0%
!! AGAGTAGAATGGACTAGAAT+CGG + chr4_4:12210313-12210332 Msa0670120:intron 35.0%
GGTTGGAATTACATTTGGTT+AGG + chr4_4:12210389-12210408 Msa0670120:intron 35.0%
!! ACACCTGTTTCTGAAAATCT+AGG - chr4_4:12210628-12210647 None:intergenic 35.0%
!! GAATTGGTAATGGAATAGAG+TGG - chr4_4:12210670-12210689 None:intergenic 35.0%
AAACCAAACACCAATCCAAA+AGG + chr4_4:12210786-12210805 Msa0670120:intron 35.0%
!!! TTACCTTTTGGATTGGTGTT+TGG - chr4_4:12210792-12210811 None:intergenic 35.0%
TTGACGAAGCAACATATTCT+TGG + chr4_4:12210978-12210997 Msa0670120:intron 35.0%
GAATTGGAAATCGGTGAATT+GGG - chr4_4:12211020-12211039 None:intergenic 35.0%
TGAATTGGAAATCGGTGAAT+TGG - chr4_4:12211021-12211040 None:intergenic 35.0%
! TCACTCTCTACTCATTTTAG+AGG - chr4_4:12211142-12211161 None:intergenic 35.0%
! TCTAAAATGAGTAGAGAGTG+AGG + chr4_4:12211141-12211160 Msa0670120:intron 35.0%
TCATTCAACCCTTGCATATT+AGG + chr4_4:12211233-12211252 Msa0670120:intron 35.0%
CATATTAGGTTCTATGTTCC+TGG + chr4_4:12211247-12211266 Msa0670120:intron 35.0%
GTGTGCTTATTAGTGATGTT+AGG + chr4_4:12211320-12211339 Msa0670120:intron 35.0%
TGCTTATTAGTGATGTTAGG+TGG + chr4_4:12211323-12211342 Msa0670120:intron 35.0%
! AACATAGTCCGTTCTTTTAC+TGG + chr4_4:12211696-12211715 Msa0670120:CDS 35.0%
!! GCAAACATAAAAAGTGCTCT+GGG + chr4_4:12211974-12211993 Msa0670120:intron 35.0%
!! AAGTACTTTGAGACTGTTTG+AGG - chr4_4:12212177-12212196 None:intergenic 35.0%
AGATGAGATAAGAACCTCTA+TGG - chr4_4:12212343-12212362 None:intergenic 35.0%
! GGTTCTTATCTCATCTTTTG+TGG + chr4_4:12212347-12212366 Msa0670120:intron 35.0%
! TTACTCCTATGATGGAACTT+AGG + chr4_4:12212545-12212564 Msa0670120:intron 35.0%
! TACTCCTATGATGGAACTTA+GGG + chr4_4:12212546-12212565 Msa0670120:intron 35.0%
! TTTTCCCTAAGTTCCATCAT+AGG - chr4_4:12212553-12212572 None:intergenic 35.0%
TATCTCAACTCTAACTTCAG+AGG + chr4_4:12212767-12212786 Msa0670120:intron 35.0%
ATTGTATCCTTCAATGCTGT+CGG + chr4_4:12212887-12212906 Msa0670120:intron 35.0%
ATGTTACCTTACCTCCTAAT+TGG + chr4_4:12212971-12212990 Msa0670120:intron 35.0%
AAAGATCCAATTAGGAGGTA+AGG - chr4_4:12212980-12212999 None:intergenic 35.0%
GACACGCTTAAAATTCTTTC+AGG + chr4_4:12213411-12213430 Msa0670120:intron 35.0%
CACGCTTAAAATTCTTTCAG+GGG + chr4_4:12213413-12213432 Msa0670120:intron 35.0%
CCTTAGAGACCATTGTAAAA+TGG - chr4_4:12213582-12213601 None:intergenic 35.0%
! CCATTTTACAATGGTCTCTA+AGG + chr4_4:12213579-12213598 Msa0670120:intron 35.0%
ACTTTGATCTCGTAACCTAA+AGG - chr4_4:12213621-12213640 None:intergenic 35.0%
TTTCATTGGCACTTCAAAAC+AGG - chr4_4:12213734-12213753 None:intergenic 35.0%
CCTTGTAGTTCAAGATTCTT+GGG - chr4_4:12213859-12213878 None:intergenic 35.0%
TCCTTGTAGTTCAAGATTCT+TGG - chr4_4:12213860-12213879 None:intergenic 35.0%
CTACAAGGAAAACTTAGAAG+TGG + chr4_4:12213871-12213890 Msa0670120:CDS 35.0%
!! ACACAATGATTTGGTGTGTT+TGG + chr4_4:12214040-12214059 Msa0670120:three_prime_UTR 35.0%
AAATGTCGAAATTGTTAGGC+CGG + chr4_4:12214190-12214209 Msa0670120:three_prime_UTR 35.0%
! AAAAAATGGTAGGTACTGCT+AGG + chr4_4:12214283-12214302 Msa0670120:three_prime_UTR 35.0%
! AAAAATGGTAGGTACTGCTA+GGG + chr4_4:12214284-12214303 Msa0670120:three_prime_UTR 35.0%
AAGAAAGATGCAGAATGGAG+AGG + chr4_4:12209081-12209100 Msa0670120:CDS 40.0%
!! CTTCACTTTTCGCCCTTTAA+CGG + chr4_4:12209164-12209183 Msa0670120:CDS 40.0%
GACTAATGAAGTGCAGAATC+AGG - chr4_4:12209245-12209264 None:intergenic 40.0%
TCGAACCTAACACCTTAACA+AGG - chr4_4:12209337-12209356 None:intergenic 40.0%
CTAAATTAGCCCACCCAAAT+TGG - chr4_4:12209370-12209389 None:intergenic 40.0%
AATACATTGAGGGGCTATTG+TGG + chr4_4:12209587-12209606 Msa0670120:intron 40.0%
TGGCTACTCGTTATACATTC+AGG + chr4_4:12209607-12209626 Msa0670120:intron 40.0%
GGCTACTCGTTATACATTCA+GGG + chr4_4:12209608-12209627 Msa0670120:intron 40.0%
! CAACAGGGTAATAGCCATTT+TGG - chr4_4:12209635-12209654 None:intergenic 40.0%
! TGTGTCCCACCATTTTATGT+GGG + chr4_4:12209923-12209942 Msa0670120:intron 40.0%
GAAATGGCTCCCACATAAAA+TGG - chr4_4:12209935-12209954 None:intergenic 40.0%
TGGGAGCCATTTCAAAAGTA+CGG + chr4_4:12209942-12209961 Msa0670120:intron 40.0%
!! TAGGTCCCGTACTTTTGAAA+TGG - chr4_4:12209951-12209970 None:intergenic 40.0%
TCACGATATTCCGCTAAATC+TGG + chr4_4:12210108-12210127 Msa0670120:intron 40.0%
CGGCAAAAATCCAGATTTAG+CGG - chr4_4:12210121-12210140 None:intergenic 40.0%
! CGCTAAATCTGGATTTTTGC+CGG + chr4_4:12210119-12210138 Msa0670120:intron 40.0%
CCCTAGTTAAAATGGTCAAC+CGG - chr4_4:12210141-12210160 None:intergenic 40.0%
!!! CCGGTTGACCATTTTAACTA+GGG + chr4_4:12210138-12210157 Msa0670120:intron 40.0%
CTAGGGAACATACATTGTGA+TGG + chr4_4:12210155-12210174 Msa0670120:intron 40.0%
! TTTTGCGAGTTTTTCCTTCG+CGG + chr4_4:12210178-12210197 Msa0670120:intron 40.0%
TGAAGCGCAAACATAGAACA+GGG - chr4_4:12210253-12210272 None:intergenic 40.0%
ATGAAGCGCAAACATAGAAC+AGG - chr4_4:12210254-12210273 None:intergenic 40.0%
TCATAGCTGGCTGATATGTT+TGG + chr4_4:12210270-12210289 Msa0670120:intron 40.0%
! GGTCCTAGATTTTCAGAAAC+AGG + chr4_4:12210622-12210641 Msa0670120:intron 40.0%
CTGTTACAATTTGATGCAGC+AGG + chr4_4:12210852-12210871 Msa0670120:intron 40.0%
AGACACGCAGTCATATTTAG+TGG - chr4_4:12210905-12210924 None:intergenic 40.0%
TCATCAACAACTAAACGTGC+TGG + chr4_4:12210933-12210952 Msa0670120:intron 40.0%
GAGAGTGAGGAAATCAATGA+TGG + chr4_4:12211154-12211173 Msa0670120:intron 40.0%
!! ATTGTGTCGATTCCTAACAC+AGG + chr4_4:12211192-12211211 Msa0670120:intron 40.0%
CAACACATGGTATCATTTCC+AGG - chr4_4:12211268-12211287 None:intergenic 40.0%
! TGATACCATGTGTTGTTGTG+TGG + chr4_4:12211273-12211292 Msa0670120:intron 40.0%
ACATACCACACAACAACACA+TGG - chr4_4:12211281-12211300 None:intergenic 40.0%
!!! CTTTAGGTTTTGAAACTGCG+AGG + chr4_4:12211470-12211489 Msa0670120:intron 40.0%
CTTCTGCGATGTTCATTATC+CGG - chr4_4:12211511-12211530 None:intergenic 40.0%
AATGAACATCGCAGAAGAAG+AGG + chr4_4:12211514-12211533 Msa0670120:CDS 40.0%
! TCCAAAGTCTTGTGATGGAA+AGG + chr4_4:12211659-12211678 Msa0670120:CDS 40.0%
TCCTTTCCATCACAAGACTT+TGG - chr4_4:12211663-12211682 None:intergenic 40.0%
! TAGTCCGTTCTTTTACTGGA+AGG + chr4_4:12211700-12211719 Msa0670120:CDS 40.0%
CAAGCCTTCCAGTAAAAGAA+CGG - chr4_4:12211707-12211726 None:intergenic 40.0%
!! CGCAAACATAAAAAGTGCTC+TGG + chr4_4:12211973-12211992 Msa0670120:intron 40.0%
!! GTTGTTTTCATGAGCTATCC+TGG + chr4_4:12212100-12212119 Msa0670120:intron 40.0%
CTTATTTCCATGAGCATTCC+AGG - chr4_4:12212121-12212140 None:intergenic 40.0%
TGATGGAACTTAGGGAAAAC+TGG + chr4_4:12212554-12212573 Msa0670120:intron 40.0%
! GACCGACTTAAAAACACAAC+TGG + chr4_4:12212591-12212610 Msa0670120:intron 40.0%
TTCTCGCACTTAATAGAGGT+TGG + chr4_4:12212698-12212717 Msa0670120:intron 40.0%
TCAACTCTAACTTCAGAGGT+TGG + chr4_4:12212771-12212790 Msa0670120:intron 40.0%
GAGGAAAAGATCCAATTAGG+AGG - chr4_4:12212985-12213004 None:intergenic 40.0%
TGCAGAAATTGAAACCTGCA+TGG + chr4_4:12213096-12213115 Msa0670120:intron 40.0%
ACTAGTGATCACTGATGAGA+GGG - chr4_4:12213272-12213291 None:intergenic 40.0%
! TCATCAGTGATCACTAGTCT+CGG + chr4_4:12213274-12213293 Msa0670120:intron 40.0%
! ACTCTATCGTGTCGATAGAA+TGG - chr4_4:12213318-12213337 None:intergenic 40.0%
AGGTTACGAGATCAAAGTCT+TGG + chr4_4:12213623-12213642 Msa0670120:intron 40.0%
! TGAAGTGCCAATGAAAAGAG+AGG + chr4_4:12213738-12213757 Msa0670120:intron 40.0%
GAGAGATATTTCTCCACATC+AGG + chr4_4:12213811-12213830 Msa0670120:CDS 40.0%
! TTCAGTTTTCTGACCTGATG+TGG - chr4_4:12213827-12213846 None:intergenic 40.0%
CCCAAGAATCTTGAACTACA+AGG + chr4_4:12213856-12213875 Msa0670120:CDS 40.0%
GTTTGGAAGTTGCGAGAAAA+TGG + chr4_4:12213993-12214012 Msa0670120:three_prime_UTR 40.0%
GACATTTAACCAGTTGAGCT+AGG - chr4_4:12214177-12214196 None:intergenic 40.0%
AAACTCATACACACAAGTGG+AGG - chr4_4:12214225-12214244 None:intergenic 40.0%
AGGATTGTGTTCATTGACAC+TGG - chr4_4:12214375-12214394 None:intergenic 40.0%
TCAATGAACACAATCCTGCA+AGG + chr4_4:12214378-12214397 Msa0670120:three_prime_UTR 40.0%
TGTCAACAAAAGATCCTTGC+AGG - chr4_4:12214395-12214414 None:intergenic 40.0%
GGAGGAAGAAAGATGCAGAA+TGG + chr4_4:12209076-12209095 Msa0670120:CDS 45.0%
AAAGATGCAGAATGGAGAGG+TGG + chr4_4:12209084-12209103 Msa0670120:CDS 45.0%
AAGATGCAGAATGGAGAGGT+GGG + chr4_4:12209085-12209104 Msa0670120:CDS 45.0%
!! TTCTCTCTTGGTGTCGACTT+AGG + chr4_4:12209108-12209127 Msa0670120:CDS 45.0%
!! TCTTGGTGTCGACTTAGGAA+TGG + chr4_4:12209113-12209132 Msa0670120:CDS 45.0%
AATAACCCGCCTAGTGGTAT+TGG + chr4_4:12209290-12209309 Msa0670120:intron 45.0%
! TTAACAAGGAGCACACTCTC+AGG - chr4_4:12209323-12209342 None:intergenic 45.0%
! TGAGAGTGTGCTCCTTGTTA+AGG + chr4_4:12209322-12209341 Msa0670120:intron 45.0%
! GTGCTCCTTGTTAAGGTGTT+AGG + chr4_4:12209329-12209348 Msa0670120:intron 45.0%
! ACAAGTGCTAGAGAGAGTGT+TGG - chr4_4:12209880-12209899 None:intergenic 45.0%
! GTGTGTCCCACCATTTTATG+TGG + chr4_4:12209922-12209941 Msa0670120:intron 45.0%
TGGCTCCCACATAAAATGGT+GGG - chr4_4:12209931-12209950 None:intergenic 45.0%
ATGGCTCCCACATAAAATGG+TGG - chr4_4:12209932-12209951 None:intergenic 45.0%
! GGGAGCCATTTCAAAAGTAC+GGG + chr4_4:12209943-12209962 Msa0670120:intron 45.0%
!!! GCCGGTTGACCATTTTAACT+AGG + chr4_4:12210137-12210156 Msa0670120:intron 45.0%
CTATGTTTGCGCTTCATAGC+TGG + chr4_4:12210257-12210276 Msa0670120:intron 45.0%
GCTGGCTGATATGTTTGGAT+TGG + chr4_4:12210275-12210294 Msa0670120:intron 45.0%
! TGGACTAGAATCGGCTAGTT+AGG + chr4_4:12210322-12210341 Msa0670120:intron 45.0%
! GGACTAGAATCGGCTAGTTA+GGG + chr4_4:12210323-12210342 Msa0670120:intron 45.0%
TAGCGATTCTGACCTGTGTT+AGG - chr4_4:12211207-12211226 None:intergenic 45.0%
! GGACTTCCAAAGTCTTGTGA+TGG + chr4_4:12211654-12211673 Msa0670120:CDS 45.0%
! GACATAGAGCATCTCCATAG+AGG + chr4_4:12212326-12212345 Msa0670120:intron 45.0%
ACAAGAACCATCCTTACACC+TGG + chr4_4:12212509-12212528 Msa0670120:intron 45.0%
GATGCTCTTTCGTTACCGAA+AGG + chr4_4:12212616-12212635 Msa0670120:intron 45.0%
CATGTCGACCATTCGATCTA+TGG - chr4_4:12212837-12212856 None:intergenic 45.0%
!!! TCCTTCAATGCTGTCGGTTT+TGG + chr4_4:12212893-12212912 Msa0670120:intron 45.0%
! TCCAAAACCGACAGCATTGA+AGG - chr4_4:12212897-12212916 None:intergenic 45.0%
!!! GCTGTCGGTTTTGGATGAAA+TGG + chr4_4:12212902-12212921 Msa0670120:intron 45.0%
GACTAGTGATCACTGATGAG+AGG - chr4_4:12213273-12213292 None:intergenic 45.0%
ATTCTTTCAGGGGCTTGAGT+AGG + chr4_4:12213423-12213442 Msa0670120:intron 45.0%
! GGCATCTTGTTTCTTCTGCT+GGG - chr4_4:12213450-12213469 None:intergenic 45.0%
! AGGCATCTTGTTTCTTCTGC+TGG - chr4_4:12213451-12213470 None:intergenic 45.0%
TACACTTACCATGGCAGCAT+AGG - chr4_4:12213471-12213490 None:intergenic 45.0%
TCTAGAAGTCCTAGCTCAAC+TGG + chr4_4:12214165-12214184 Msa0670120:three_prime_UTR 45.0%
AAGAGTTTCAAGGGTGGCAC+TGG - chr4_4:12208943-12208962 None:intergenic 50.0%
GAGTGCAAGAGTTTCAAGGG+TGG - chr4_4:12208949-12208968 None:intergenic 50.0%
AACTTCCTCCAAACGCGCTT+CGG + chr4_4:12209055-12209074 Msa0670120:CDS 50.0%
GACTTAGGAATGGCTCGTAC+TGG + chr4_4:12209123-12209142 Msa0670120:CDS 50.0%
ACTGGCATTGCTCTCAGCAA+AGG + chr4_4:12209141-12209160 Msa0670120:CDS 50.0%
TCTCTCAATAACCCGCCTAG+TGG + chr4_4:12209284-12209303 Msa0670120:intron 50.0%
CCAAACCAATACCACTAGGC+GGG - chr4_4:12209298-12209317 None:intergenic 50.0%
CCCAAACCAATACCACTAGG+CGG - chr4_4:12209299-12209318 None:intergenic 50.0%
!! CCGCCTAGTGGTATTGGTTT+GGG + chr4_4:12209296-12209315 Msa0670120:intron 50.0%
GGTCCCAAACCAATACCACT+AGG - chr4_4:12209302-12209321 None:intergenic 50.0%
TCGATTCTCCCGTGCCAATT+TGG + chr4_4:12209353-12209372 Msa0670120:intron 50.0%
CGATTCTCCCGTGCCAATTT+GGG + chr4_4:12209354-12209373 Msa0670120:intron 50.0%
TTAGCCCACCCAAATTGGCA+CGG - chr4_4:12209365-12209384 None:intergenic 50.0%
ATACAGGCTATTCACCGCGA+AGG - chr4_4:12210195-12210214 None:intergenic 50.0%
CAATTTGATGCAGCAGGCTC+TGG + chr4_4:12210858-12210877 Msa0670120:intron 50.0%
ACTGCGAGGACAGAAACTTG+AGG + chr4_4:12211484-12211503 Msa0670120:CDS 50.0%
GAGGACAGAAACTTGAGGTC+CGG + chr4_4:12211489-12211508 Msa0670120:CDS 50.0%
ACATCGCAGAAGAAGAGGTC+TGG + chr4_4:12211519-12211538 Msa0670120:intron 50.0%
TTGCTAATCGAGCTGCTGAG+AGG + chr4_4:12211724-12211743 Msa0670120:CDS 50.0%
! AAAGTGCTCTGGGCTCTTTC+TGG + chr4_4:12211984-12212003 Msa0670120:intron 50.0%
GAGCTATCCTGGAATGCTCA+TGG + chr4_4:12212111-12212130 Msa0670120:intron 50.0%
GCGCAAGCTTACTCCTATGA+TGG + chr4_4:12212537-12212556 Msa0670120:intron 50.0%
ATCAGCCGCCATAGATCGAA+TGG + chr4_4:12212826-12212845 Msa0670120:CDS 50.0%
GTCGACCATTCGATCTATGG+CGG - chr4_4:12212834-12212853 None:intergenic 50.0%
GTGATCACTGATGAGAGGGT+TGG - chr4_4:12213268-12213287 None:intergenic 50.0%
! TCAGTGATCACTAGTCTCGG+AGG + chr4_4:12213277-12213296 Msa0670120:intron 50.0%
ACAAGATGCCTATGCTGCCA+TGG + chr4_4:12213460-12213479 Msa0670120:intron 50.0%
! GGCACTGAGTTGACATCTCA+TGG + chr4_4:12213644-12213663 Msa0670120:intron 50.0%
!! ACACACAAGTGGAGGTACCT+GGG - chr4_4:12214217-12214236 None:intergenic 50.0%
!! TACACACAAGTGGAGGTACC+TGG - chr4_4:12214218-12214237 None:intergenic 50.0%
TTCTTCCTCCGAAGCGCGTT+TGG - chr4_4:12209066-12209085 None:intergenic 55.0%
! TGGAGAGGTGGGTTCTCTCT+TGG + chr4_4:12209096-12209115 Msa0670120:CDS 55.0%
!! CCCGCCTAGTGGTATTGGTT+TGG + chr4_4:12209295-12209314 Msa0670120:intron 55.0%
TTCTCCCGTGCCAATTTGGG+TGG + chr4_4:12209357-12209376 Msa0670120:intron 55.0%
TCTCCCGTGCCAATTTGGGT+GGG + chr4_4:12209358-12209377 Msa0670120:intron 55.0%
TAGCCCACCCAAATTGGCAC+GGG - chr4_4:12209364-12209383 None:intergenic 55.0%
GCAGATGCCAGGTGTAAGGA+TGG - chr4_4:12212519-12212538 None:intergenic 55.0%
TTGCGCAGATGCCAGGTGTA+AGG - chr4_4:12212523-12212542 None:intergenic 55.0%
AGTAAGCTTGCGCAGATGCC+AGG - chr4_4:12212530-12212549 None:intergenic 55.0%
GAAATTGTTAGGCCGGACCC+AGG + chr4_4:12214197-12214216 Msa0670120:three_prime_UTR 55.0%
TTCCTCCAAACGCGCTTCGG+AGG + chr4_4:12209058-12209077 Msa0670120:CDS 60.0%
TTCCTCCGAAGCGCGTTTGG+AGG - chr4_4:12209063-12209082 None:intergenic 60.0%
!! CAAGTGGAGGTACCTGGGTC+CGG - chr4_4:12214212-12214231 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 12208777 12214438 12208777 ID=Msa0670120;Name=Msa0670120
chr4_4 mRNA 12208777 12214438 12208777 ID=Msa0670120-mRNA-1;Parent=Msa0670120;Name=Msa0670120-mRNA-1;_AED=0.19;_eAED=0.19;_QI=107|0.66|0.85|0.85|0.33|0.57|7|505|217
chr4_4 exon 12208777 12208871 12208777 ID=Msa0670120-mRNA-1:exon:3707;Parent=Msa0670120-mRNA-1
chr4_4 exon 12208901 12209185 12208901 ID=Msa0670120-mRNA-1:exon:3708;Parent=Msa0670120-mRNA-1
chr4_4 exon 12211476 12211535 12211476 ID=Msa0670120-mRNA-1:exon:3709;Parent=Msa0670120-mRNA-1
chr4_4 exon 12211633 12211745 12211633 ID=Msa0670120-mRNA-1:exon:3710;Parent=Msa0670120-mRNA-1
chr4_4 exon 12212787 12212855 12212787 ID=Msa0670120-mRNA-1:exon:3711;Parent=Msa0670120-mRNA-1
chr4_4 exon 12212948 12212954 12212948 ID=Msa0670120-mRNA-1:exon:3712;Parent=Msa0670120-mRNA-1
chr4_4 exon 12213802 12214438 12213802 ID=Msa0670120-mRNA-1:exon:3713;Parent=Msa0670120-mRNA-1
chr4_4 five_prime_UTR 12208777 12208871 12208777 ID=Msa0670120-mRNA-1:five_prime_utr;Parent=Msa0670120-mRNA-1
chr4_4 five_prime_UTR 12208901 12208912 12208901 ID=Msa0670120-mRNA-1:five_prime_utr;Parent=Msa0670120-mRNA-1
chr4_4 CDS 12208913 12209185 12208913 ID=Msa0670120-mRNA-1:cds;Parent=Msa0670120-mRNA-1
chr4_4 CDS 12211476 12211535 12211476 ID=Msa0670120-mRNA-1:cds;Parent=Msa0670120-mRNA-1
chr4_4 CDS 12211633 12211745 12211633 ID=Msa0670120-mRNA-1:cds;Parent=Msa0670120-mRNA-1
chr4_4 CDS 12212787 12212855 12212787 ID=Msa0670120-mRNA-1:cds;Parent=Msa0670120-mRNA-1
chr4_4 CDS 12212948 12212954 12212948 ID=Msa0670120-mRNA-1:cds;Parent=Msa0670120-mRNA-1
chr4_4 CDS 12213802 12213933 12213802 ID=Msa0670120-mRNA-1:cds;Parent=Msa0670120-mRNA-1
chr4_4 three_prime_UTR 12213934 12214438 12213934 ID=Msa0670120-mRNA-1:three_prime_utr;Parent=Msa0670120-mRNA-1
Gene Sequence

>Msa0670120

ATGTGGACGCAGCAGCAGCTTGTACAACCAGTGCCACCCTTGAAACTCTTGCACTCATTTCAACCTTCAAATCATGCAAAAATTCAATCTTTATCAAAATTAAATTCGACCCACAATCTAAAAACAGCATTAACTTTGGAAGAACTTCCTCCAAACGCGCTTCGGAGGAAGAAAGATGCAGAATGGAGAGGTGGGTTCTCTCTTGGTGTCGACTTAGGAATGGCTCGTACTGGCATTGCTCTCAGCAAAGGCTTCACTTTTCGCCCTTTAACGGTTTTGAAACTGCGAGGACAGAAACTTGAGGTCCGGATAATGAACATCGCAGAAGAAGAGGAAGCTGATGAGTTTATAATTGGACTTCCAAAGTCTTGTGATGGAAAGGAAACGATACAGTCAAACATAGTCCGTTCTTTTACTGGAAGGCTTGCTAATCGAGCTGCTGAGAGAGGTTGGAGAGTATATCTACACGATGAATATGGGACGACATCAGCCGCCATAGATCGAATGGTCGACATGGAAGCTATGTTACTTGAGAGATATTTCTCCACATCAGGTCAGAAAACTGAACTTGTTGTGCCCAAGAATCTTGAACTACAAGGAAAACTTAGAAGTGGTCCTCCCAAAGATGATGATTATTTCTCAGACGAAGATTAA
Protein sequence

>Msa0670120

MWTQQQLVQPVPPLKLLHSFQPSNHAKIQSLSKLNSTHNLKTALTLEELPPNALRRKKDAEWRGGFSLGVDLGMARTGIALSKGFTFRPLTVLKLRGQKLEVRIMNIAEEEEADEFIIGLPKSCDGKETIQSNIVRSFTGRLANRAAERGWRVYLHDEYGTTSAAIDRMVDMEAMLLERYFSTSGQKTELVVPKNLELQGKLRSGPPKDDDYFSDED*