AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0537580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537580 MtrunA17_Chr4g0012671 75.439 228 14 2 2 187 4 231 5.63e-117 331
Msa0537580 MtrunA17_Chr2g0312491 74.886 219 12 3 2 178 4 221 2.39e-108 309
Msa0537580 MtrunA17_Chr2g0312501 93.548 62 4 0 2 63 4 65 2.03e-36 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537580 AT1G12244.1 51.913 183 45 2 43 182 61 243 1.16e-45 151

Find 61 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTACAAAACTTCAAATTA+AGG 0.212601 4_1:-16267248 Msa0537580:three_prime_UTR
TCCTTGTAGTTCAAGATTCT+TGG 0.213325 4_1:+16267459 None:intergenic
GAAGCTGATGAGTTTATAAT+TGG 0.233134 4_1:-16269660 Msa0537580:CDS
TTCTTCCTCCGAAGCGCGTT+TGG 0.249873 4_1:+16272173 None:intergenic
TGAGAAATAATCATCATCTT+TGG 0.274796 4_1:+16267417 None:intergenic
GTATATCTACACGATGAATA+TGG 0.323530 4_1:-16268499 Msa0537580:CDS
GGTTAAATGCCGAAATTGTT+AGG 0.333058 4_1:-16267132 Msa0537580:three_prime_UTR
TGTCAACAAAAGATCCTTGC+AGG 0.341856 4_1:+16266926 None:intergenic
TGTTAATCAACACAATGATT+TGG 0.342439 4_1:-16267285 Msa0537580:three_prime_UTR
ACACAATGATTTGGTGTGTT+TGG 0.346971 4_1:-16267276 Msa0537580:three_prime_UTR
CCTTGTAGTTCAAGATTCTT+GGG 0.350745 4_1:+16267460 None:intergenic
TACTATTACATCAAAATAAA+CGG 0.354934 4_1:+16267192 None:intergenic
GTTTGGAAGTTGCGAGAAAA+TGG 0.366349 4_1:-16267323 Msa0537580:three_prime_UTR
TCTAATTTCAAGTATGCGTT+TGG 0.385558 4_1:-16267340 Msa0537580:three_prime_UTR
TTGTGTGTGTGAGTTTATAA+TGG 0.392127 4_1:-16267089 Msa0537580:three_prime_UTR
GAGAAATAATCATCATCTTT+GGG 0.395248 4_1:+16267418 None:intergenic
CTTCTGCGATGTTCATTATC+CGG 0.402017 4_1:+16269785 None:intergenic
AACTTCCTCCAAACGCGCTT+CGG 0.404160 4_1:-16272181 Msa0537580:CDS
CATGTCGACCATTCGATCTA+TGG 0.407762 4_1:+16268462 None:intergenic
GAAGATTAATCACTTAATAA+AGG 0.409357 4_1:-16267391 Msa0537580:exon
GAGAGATATTTCTCCACATC+AGG 0.432417 4_1:-16267505 Msa0537580:CDS
CAAGTGGAGGTACCGGGGTC+CGG 0.448894 4_1:+16267109 None:intergenic
GGGGTCCGGCCTAACAATTT+CGG 0.459732 4_1:+16267123 None:intergenic
AAATTAGAAAACACGAATGA+TGG 0.464328 4_1:+16267355 None:intergenic
TCCTTTCCATCACAAGACTT+TGG 0.469405 4_1:+16269633 None:intergenic
AAGAGTTTCAAGGGTGGCAC+TGG 0.486520 4_1:+16272296 None:intergenic
TCTAGAAGTCCTAGCTCAAC+TGG 0.487412 4_1:-16267153 Msa0537580:three_prime_UTR
AAATGAGTGCAAGAGTTTCA+AGG 0.491961 4_1:+16272286 None:intergenic
TATATCTACACGATGAATAT+GGG 0.495994 4_1:-16268498 Msa0537580:CDS
TTCCTCCGAAGCGCGTTTGG+AGG 0.506216 4_1:+16272176 None:intergenic
TTGGAGAGGAGGTTCTCTCT+TGG 0.509720 4_1:-16272141 Msa0537580:intron
CACACACAAGTGGAGGTACC+GGG 0.510025 4_1:+16267103 None:intergenic
ACACACACAAGTGGAGGTAC+CGG 0.513738 4_1:+16267102 None:intergenic
AAATGCCGAAATTGTTAGGC+CGG 0.521609 4_1:-16267128 Msa0537580:three_prime_UTR
GGAGGAAGAAAGATGCAGAT+TGG 0.522484 4_1:-16272160 Msa0537580:CDS
TCCAAAGTCTTGTGATGGAA+AGG 0.526441 4_1:-16269634 Msa0537580:CDS
AACTTCAAATTAAGGATGTG+TGG 0.527731 4_1:-16267240 Msa0537580:three_prime_UTR
GGCATTTAACCAGTTGAGCT+AGG 0.535749 4_1:+16267144 None:intergenic
GGACTTCCAAAGTCTTGTGA+TGG 0.537166 4_1:-16269639 Msa0537580:CDS
CCCAAGAATCTTGAACTACA+AGG 0.541911 4_1:-16267460 Msa0537580:CDS
GAGGACAGAAACTTGAGGTC+CGG 0.550595 4_1:-16269804 Msa0537580:CDS
ACTTCAAATTAAGGATGTGT+GGG 0.550996 4_1:-16267239 Msa0537580:three_prime_UTR
AATGAGTGCAAGAGTTTCAA+GGG 0.561769 4_1:+16272287 None:intergenic
TTCCTCCAAACGCGCTTCGG+AGG 0.565039 4_1:-16272178 Msa0537580:CDS
AAAGATGCAGATTGGAGAGG+AGG 0.565847 4_1:-16272152 Msa0537580:CDS
ATCAGCCGCCATAGATCGAA+TGG 0.579290 4_1:-16268470 Msa0537580:intron
AATGAACATCGCAGAAGAAG+AGG 0.590370 4_1:-16269779 Msa0537580:intron
AGGATTGTGTTCATTGACAC+TGG 0.604127 4_1:+16266946 None:intergenic
AAGAAAGATGCAGATTGGAG+AGG 0.610227 4_1:-16272155 Msa0537580:CDS
CTACAAGGAAAACTTAGAAG+TGG 0.611235 4_1:-16267445 Msa0537580:CDS
TATAAACTCACACACACAAG+TGG 0.621836 4_1:+16267093 None:intergenic
GAAATTGTTAGGCCGGACCC+CGG 0.622094 4_1:-16267121 Msa0537580:three_prime_UTR
CAAGCCTTCCAGTAAAAGAA+CGG 0.630801 4_1:+16269589 None:intergenic
AAACTCACACACACAAGTGG+AGG 0.652693 4_1:+16267096 None:intergenic
TCAATGAACACAATCCTGCA+AGG 0.662441 4_1:-16266940 Msa0537580:three_prime_UTR
TTGCTAATCGAGCTGCTGAG+AGG 0.671815 4_1:-16269569 Msa0537580:intron
AAATAATCATCATCTTTGGG+AGG 0.679374 4_1:+16267421 None:intergenic
GTCGACCATTCGATCTATGG+CGG 0.692504 4_1:+16268465 None:intergenic
ACACACAAGTGGAGGTACCG+GGG 0.699262 4_1:+16267104 None:intergenic
ACTGCGAGGACAGAAACTTG+AGG 0.702953 4_1:-16269809 Msa0537580:CDS
GAGTGCAAGAGTTTCAAGGG+TGG 0.721147 4_1:+16272290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAATATTTATATTTT+TGG + chr4_1:16267848-16267867 None:intergenic 0.0%
!! TTCTTCATAATTATTTATTA+TGG + chr4_1:16272202-16272221 None:intergenic 10.0%
!!! ATTTGAAATATCATATTTTT+AGG - chr4_1:16272593-16272612 Msa0537580:intron 10.0%
!!! TTTGAAATATCATATTTTTA+GGG - chr4_1:16272594-16272613 Msa0537580:intron 10.0%
!!! TTAAAAAAAAAGAATGTTTT+TGG - chr4_1:16272793-16272812 Msa0537580:intron 10.0%
!!! TAAAAAAAAAGAATGTTTTT+GGG - chr4_1:16272794-16272813 Msa0537580:intron 10.0%
!!! TTGAAAATTTTAATCAGTTA+GGG - chr4_1:16268836-16268855 Msa0537580:intron 15.0%
!!! TTAAATTCAATTTTTTCAAG+AGG - chr4_1:16268989-16269008 Msa0537580:intron 15.0%
!!! GTTTTACAAATTGATAATAA+AGG + chr4_1:16270232-16270251 None:intergenic 15.0%
!! AAAGTAAATACACAATTATA+AGG + chr4_1:16270583-16270602 None:intergenic 15.0%
!! TATAATTGTGTATTTACTTT+AGG - chr4_1:16270583-16270602 Msa0537580:intron 15.0%
!!! TTCTATTCATTTTCTTATTT+TGG + chr4_1:16270936-16270955 None:intergenic 15.0%
!! AATAAGAAAATGAATAGAAA+AGG - chr4_1:16270937-16270956 Msa0537580:intron 15.0%
!! ATAAGAAAATGAATAGAAAA+GGG - chr4_1:16270938-16270957 Msa0537580:intron 15.0%
!! CATTATTCTTAATTCTTATA+AGG - chr4_1:16271357-16271376 Msa0537580:intron 15.0%
!!! TATCAATAGATCATTATTTT+AGG + chr4_1:16271599-16271618 None:intergenic 15.0%
!!! TATATAGTTTAAAACCATTT+TGG - chr4_1:16272291-16272310 Msa0537580:CDS 15.0%
!!! AAACAATTTTATATCCAAAA+TGG + chr4_1:16272308-16272327 None:intergenic 15.0%
!! TACTATTACATCAAAATAAA+CGG + chr4_1:16273233-16273252 None:intergenic 15.0%
!!! TTTTGATGTAATAGTAAAAA+TGG - chr4_1:16273237-16273256 Msa0537580:intron 15.0%
!!! ATAAAAAAGGGATTTTAGAT+TGG + chr4_1:16267563-16267582 None:intergenic 20.0%
!!! ACATTAACTCTTTTCATATA+GGG - chr4_1:16268608-16268627 Msa0537580:intron 20.0%
!! ATAGTAAATAAGTATGTGTA+AGG - chr4_1:16268640-16268659 Msa0537580:intron 20.0%
!!! GTTGAAAATTTTAATCAGTT+AGG - chr4_1:16268835-16268854 Msa0537580:intron 20.0%
!!! ACACATAAATTTTATCCAAT+AGG + chr4_1:16269061-16269080 None:intergenic 20.0%
!! TTATTAGGTAAAATCTACTT+AGG + chr4_1:16269125-16269144 None:intergenic 20.0%
!! AAATGATGTTACAAAGTAAA+CGG + chr4_1:16269505-16269524 None:intergenic 20.0%
!!! TTTCAATTTTTACATGTAGA+TGG - chr4_1:16269523-16269542 Msa0537580:intron 20.0%
!! TGATAAAATAACATTAGTGA+AGG + chr4_1:16269722-16269741 None:intergenic 20.0%
!!! CACTAATGTTATTTTATCAA+TGG - chr4_1:16269723-16269742 Msa0537580:intron 20.0%
!! TTATCAATGGAAATAAAAAC+AGG - chr4_1:16269736-16269755 Msa0537580:intron 20.0%
!! ATTTAGACATATGTTTGAAT+TGG + chr4_1:16269841-16269860 None:intergenic 20.0%
!!! GTCAAAAGAGTATATAAAAA+AGG - chr4_1:16269895-16269914 Msa0537580:intron 20.0%
!!! TTTTTATGTTTGCGAATTAT+TGG + chr4_1:16271092-16271111 None:intergenic 20.0%
!! CGAACAAAAAGATAAAATAA+AGG - chr4_1:16271185-16271204 Msa0537580:intron 20.0%
!! AAGAATTAAGAATAATGACT+TGG + chr4_1:16271354-16271373 None:intergenic 20.0%
!! CTATTATCTTTATACTCTAA+TGG - chr4_1:16271527-16271546 Msa0537580:intron 20.0%
!!! AAAACTGGTTCTTATTTATA+AGG - chr4_1:16271695-16271714 Msa0537580:intron 20.0%
!! AAAGATAAATTAGAATTCTG+CGG + chr4_1:16272106-16272125 None:intergenic 20.0%
!!! CATTTTTGACAAAAATAATG+AGG - chr4_1:16272624-16272643 Msa0537580:intron 20.0%
!! GAAGATTAATCACTTAATAA+AGG - chr4_1:16273031-16273050 Msa0537580:intron 20.0%
!!! CTTAATTTGAAGTTTTGTAA+TGG + chr4_1:16273176-16273195 None:intergenic 20.0%
!! CATTACAAAACTTCAAATTA+AGG - chr4_1:16273174-16273193 Msa0537580:intron 20.0%
! AAAATATGATTACTACAGTG+TGG + chr4_1:16267752-16267771 None:intergenic 25.0%
!! TGAATTTTTGCATGATTTGA+AGG + chr4_1:16268165-16268184 None:intergenic 25.0%
!!! TAATGCTGTTTTTAGATTGT+GGG + chr4_1:16268211-16268230 None:intergenic 25.0%
!!! TTAATGCTGTTTTTAGATTG+TGG + chr4_1:16268212-16268231 None:intergenic 25.0%
! TCTAAAAACAGCATTAACTT+TGG - chr4_1:16268215-16268234 Msa0537580:intron 25.0%
!!! AAAAGTGTTTTACCGTTAAA+GGG + chr4_1:16268364-16268383 None:intergenic 25.0%
!!! AAAAAGTGTTTTACCGTTAA+AGG + chr4_1:16268365-16268384 None:intergenic 25.0%
!!! GTTTGTTTTGTTGTTGTTTT+TGG - chr4_1:16268386-16268405 Msa0537580:intron 25.0%
!! TTTTTGGATATTCGTCATTT+TGG - chr4_1:16268402-16268421 Msa0537580:intron 25.0%
!! GACATTAACTCTTTTCATAT+AGG - chr4_1:16268607-16268626 Msa0537580:intron 25.0%
! ACTGAAACTAAAAAACAACA+GGG + chr4_1:16268817-16268836 None:intergenic 25.0%
! AACTGAAACTAAAAAACAAC+AGG + chr4_1:16268818-16268837 None:intergenic 25.0%
! AGCATTTCACTTTATCAAAT+TGG - chr4_1:16269172-16269191 Msa0537580:intron 25.0%
! ATAAGATGAATAGAGTAGAA+TGG - chr4_1:16269457-16269476 Msa0537580:intron 25.0%
! AATGATGTTACAAAGTAAAC+GGG + chr4_1:16269504-16269523 None:intergenic 25.0%
!! AATTTTTACATGTAGATGGT+TGG - chr4_1:16269527-16269546 Msa0537580:intron 25.0%
! ACTGCAAAATGTTAAAACAT+TGG + chr4_1:16269643-16269662 None:intergenic 25.0%
!! TAACATTTTGCAGTATTTTC+AGG - chr4_1:16269649-16269668 Msa0537580:CDS 25.0%
! ACATATGTTTGAATTGGTAA+TGG + chr4_1:16269835-16269854 None:intergenic 25.0%
! ACATATGTCTAAATGTGATT+TGG - chr4_1:16269847-16269866 Msa0537580:intron 25.0%
!! TGTATTGCAATTTTACCTTT+TGG + chr4_1:16269959-16269978 None:intergenic 25.0%
!! AATCTGAAGTAAATTGGATT+CGG + chr4_1:16270268-16270287 None:intergenic 25.0%
! TACACAATTATAAGGATCAA+TGG + chr4_1:16270575-16270594 None:intergenic 25.0%
! CCTATAATTCAAAATCATCT+TGG + chr4_1:16270743-16270762 None:intergenic 25.0%
!! CCAAGATGATTTTGAATTAT+AGG - chr4_1:16270740-16270759 Msa0537580:intron 25.0%
! ATAGATATTGAAGAATAGCA+AGG + chr4_1:16271411-16271430 None:intergenic 25.0%
!! AGTCCTTTAAGAATTCAAAA+TGG - chr4_1:16271553-16271572 Msa0537580:intron 25.0%
!! GAACCATTTTGAATTCTTAA+AGG + chr4_1:16271559-16271578 None:intergenic 25.0%
!!! TAGATCATTATTTTAGGATG+TGG + chr4_1:16271593-16271612 None:intergenic 25.0%
!! ACAAACTTGATTTTTCCTTT+CGG + chr4_1:16271760-16271779 None:intergenic 25.0%
! TCTGATGCTTATTTAGTATT+TGG - chr4_1:16271782-16271801 Msa0537580:intron 25.0%
! TATATCTACACGATGAATAT+GGG - chr4_1:16271924-16271943 Msa0537580:intron 25.0%
!! TGGTAAAACACTTTTCTTTT+AGG + chr4_1:16272332-16272351 None:intergenic 25.0%
! GTTACTTGAAATCTTTCAAA+AGG + chr4_1:16272472-16272491 None:intergenic 25.0%
!!! ATTTCAAGTAACATTTTGTG+TGG - chr4_1:16272480-16272499 Msa0537580:intron 25.0%
! TATTTCAAATACACTTACCA+TGG + chr4_1:16272583-16272602 None:intergenic 25.0%
! TTTGACAAAAATAATGAGGA+AGG - chr4_1:16272628-16272647 Msa0537580:intron 25.0%
! TTGACAAAAATAATGAGGAA+GGG - chr4_1:16272629-16272648 Msa0537580:intron 25.0%
!! TGTTAATGACCATTTTACAA+TGG - chr4_1:16272676-16272695 Msa0537580:intron 25.0%
!! GATTTGAATTTTGTTCCTTT+AGG - chr4_1:16272709-16272728 Msa0537580:intron 25.0%
!! TAATTGTCTTCTCTTTTCAT+TGG + chr4_1:16272854-16272873 None:intergenic 25.0%
! ATGAAAAGAGAAGACAATTA+TGG - chr4_1:16272854-16272873 Msa0537580:intron 25.0%
! GAGAAATAATCATCATCTTT+GGG + chr4_1:16273007-16273026 None:intergenic 25.0%
! TGAGAAATAATCATCATCTT+TGG + chr4_1:16273008-16273027 None:intergenic 25.0%
! AAATTAGAAAACACGAATGA+TGG + chr4_1:16273070-16273089 None:intergenic 25.0%
! TGTTAATCAACACAATGATT+TGG - chr4_1:16273137-16273156 Msa0537580:intron 25.0%
! GATGTAATAGTAAAAATGGT+AGG - chr4_1:16273241-16273260 Msa0537580:intron 25.0%
!!! CCATTTTTTTTCTTTTTGGT+TGG + chr4_1:16273376-16273395 None:intergenic 25.0%
! CCAACCAAAAAGAAAAAAAA+TGG - chr4_1:16273373-16273392 Msa0537580:intron 25.0%
!!! CCTACCATTTTTTTTCTTTT+TGG + chr4_1:16273380-16273399 None:intergenic 25.0%
! CCAAAAAGAAAAAAAATGGT+AGG - chr4_1:16273377-16273396 Msa0537580:intron 25.0%
!! TCTTTTGTTGACAGAATTAA+TGG - chr4_1:16273506-16273525 Msa0537580:intron 25.0%
!!! TTGTGGATGGGTTTTTTTTT+TGG - chr4_1:16266916-16266935 Msa0537580:three_prime_UTR 30.0%
!! ATTTTGGTGTGAGATTTTGT+CGG - chr4_1:16267120-16267139 Msa0537580:three_prime_UTR 30.0%
!! AACGTTTTGGACTTATGTTA+TGG - chr4_1:16267283-16267302 Msa0537580:three_prime_UTR 30.0%
!! ACGTTTTGGACTTATGTTAT+GGG - chr4_1:16267284-16267303 Msa0537580:three_prime_UTR 30.0%
!!! TAAAAGCGTTTTTGAGAAAC+CGG - chr4_1:16267309-16267328 Msa0537580:three_prime_UTR 30.0%
AATATCAGAGAATCAAGCAA+AGG + chr4_1:16267348-16267367 None:intergenic 30.0%
! CTTGATTCTCTGATATTTTC+AGG - chr4_1:16267351-16267370 Msa0537580:three_prime_UTR 30.0%
!!! TCGTCATCTTTTTTGTAACT+TGG - chr4_1:16267598-16267617 Msa0537580:intron 30.0%
ATCAATTTCTCTCTCTAATG+TGG - chr4_1:16268082-16268101 Msa0537580:intron 30.0%
!!! TGTGATTTGGTACTATGTTT+TGG - chr4_1:16268860-16268879 Msa0537580:intron 30.0%
! GTTTGTCCATTTTGTAAACA+CGG - chr4_1:16268886-16268905 Msa0537580:intron 30.0%
TTACAACCGTGTTTACAAAA+TGG + chr4_1:16268895-16268914 None:intergenic 30.0%
TAAACACGGTTGTAAAATGT+AGG - chr4_1:16268900-16268919 Msa0537580:intron 30.0%
! GATTTTACCTAATAAGAGAG+TGG - chr4_1:16269130-16269149 Msa0537580:intron 30.0%
TCTAATTCCACTCTCTTATT+AGG + chr4_1:16269140-16269159 None:intergenic 30.0%
TGTATGTTCCCTAGTTAAAA+TGG + chr4_1:16269304-16269323 None:intergenic 30.0%
AACCAGTAATAATCTGATAC+AGG + chr4_1:16269366-16269385 None:intergenic 30.0%
TAGATGGTTGGAATTACATT+TGG - chr4_1:16269539-16269558 Msa0537580:intron 30.0%
TAATTGTGATAGAGAGAAGA+TGG - chr4_1:16269579-16269598 Msa0537580:CDS 30.0%
AGAAGATGGAAGCTAATTAA+AGG - chr4_1:16269593-16269612 Msa0537580:CDS 30.0%
! TAACATTAGTGAAGGCATAA+CGG + chr4_1:16269714-16269733 None:intergenic 30.0%
CAGGAAACACTAAAAGTAAA+CGG - chr4_1:16269755-16269774 Msa0537580:intron 30.0%
AGGAAACACTAAAAGTAAAC+GGG - chr4_1:16269756-16269775 Msa0537580:intron 30.0%
!!! ACACCTGTTTTTGAAAATCT+AGG + chr4_1:16269783-16269802 None:intergenic 30.0%
! TGCAATTTTACCTTTTGGAT+TGG + chr4_1:16269954-16269973 None:intergenic 30.0%
! ACCAAATTGTAACAGTTTTC+TGG + chr4_1:16270002-16270021 None:intergenic 30.0%
!! TCAAGCTTTGAATTGGAAAT+CGG + chr4_1:16270184-16270203 None:intergenic 30.0%
!! AATGTGTTCAAGCTTTGAAT+TGG + chr4_1:16270191-16270210 None:intergenic 30.0%
TCCAATTTACTTCAGATTTG+AGG - chr4_1:16270270-16270289 Msa0537580:intron 30.0%
! TCCTCAAATCTGAAGTAAAT+TGG + chr4_1:16270274-16270293 None:intergenic 30.0%
AGATTTGAGGAAATCAATGA+TGG - chr4_1:16270283-16270302 Msa0537580:intron 30.0%
ACATAGAACCTAATATGCAA+GGG + chr4_1:16270373-16270392 None:intergenic 30.0%
AACATAGAACCTAATATGCA+AGG + chr4_1:16270374-16270393 None:intergenic 30.0%
TGGTATGTAAGTTTAGTCAA+TGG - chr4_1:16270472-16270491 Msa0537580:intron 30.0%
! GTAAGTTTAGTCAATGGATT+TGG - chr4_1:16270478-16270497 Msa0537580:intron 30.0%
CATACTAAACAACAAAGACA+CGG + chr4_1:16270508-16270527 None:intergenic 30.0%
TTTGTGCGATGCTTAAAATT+CGG - chr4_1:16270683-16270702 Msa0537580:intron 30.0%
AATCATCTTGGTTATCTCTA+AGG + chr4_1:16270731-16270750 None:intergenic 30.0%
GAAGCTGATGAGTTTATAAT+TGG - chr4_1:16270762-16270781 Msa0537580:intron 30.0%
ATGAATAGAAAAGGGATGAA+TGG - chr4_1:16270946-16270965 Msa0537580:intron 30.0%
! GAATTATTGGAGGTATATCT+CGG + chr4_1:16271079-16271098 None:intergenic 30.0%
TTATGTTTGCGAATTATTGG+AGG + chr4_1:16271089-16271108 None:intergenic 30.0%
TAGAGTTCTTAAAGCAAATG+CGG + chr4_1:16271510-16271529 None:intergenic 30.0%
!!! AACCAGTTGTGTTTTTAAGT+CGG + chr4_1:16271722-16271741 None:intergenic 30.0%
! TTATTTCTCGCACTTAATAG+AGG - chr4_1:16271820-16271839 Msa0537580:intron 30.0%
GTATATCTACACGATGAATA+TGG - chr4_1:16271923-16271942 Msa0537580:intron 30.0%
TTTGAGGAAAAGATCCAATT+AGG + chr4_1:16272067-16272086 None:intergenic 30.0%
AGTTATAAAACGACACTTTG+AGG + chr4_1:16272083-16272102 None:intergenic 30.0%
TTATTTATTATGGACCATGC+AGG + chr4_1:16272192-16272211 None:intergenic 30.0%
!! TGAAGAAGTATGCATGATTT+TGG - chr4_1:16272215-16272234 Msa0537580:CDS 30.0%
!! GAAGAAGTATGCATGATTTT+GGG - chr4_1:16272216-16272235 Msa0537580:CDS 30.0%
! CATTTTACAATGGTCTCTAA+GGG - chr4_1:16272686-16272705 Msa0537580:intron 30.0%
! ATTTTACAATGGTCTCTAAG+GGG - chr4_1:16272687-16272706 Msa0537580:intron 30.0%
AAATAATCATCATCTTTGGG+AGG + chr4_1:16273004-16273023 None:intergenic 30.0%
! TCTAATTTCAAGTATGCGTT+TGG - chr4_1:16273082-16273101 Msa0537580:intron 30.0%
AACTTCAAATTAAGGATGTG+TGG - chr4_1:16273182-16273201 Msa0537580:intron 30.0%
ACTTCAAATTAAGGATGTGT+GGG - chr4_1:16273183-16273202 Msa0537580:intron 30.0%
TGTGGGAAAAAAATGTCAAA+AGG - chr4_1:16273200-16273219 Msa0537580:intron 30.0%
TTGTGTGTGTGAGTTTATAA+TGG - chr4_1:16273333-16273352 Msa0537580:intron 30.0%
!!! TTTTTTTTGGTGAGCCTTCT+CGG - chr4_1:16266929-16266948 Msa0537580:three_prime_UTR 35.0%
! GCTCTTTCATTTTCTTCTTC+TGG - chr4_1:16267002-16267021 Msa0537580:three_prime_UTR 35.0%
AACAAACAGCTACAATCCAA+AGG + chr4_1:16267069-16267088 None:intergenic 35.0%
TTGGATTGTAGCTGTTTGTT+TGG - chr4_1:16267069-16267088 Msa0537580:three_prime_UTR 35.0%
! TTGTATGTTCAGAGCTTTGT+TGG - chr4_1:16267209-16267228 Msa0537580:three_prime_UTR 35.0%
!! TTATACCTGCTGATTTGTTC+AGG - chr4_1:16267487-16267506 Msa0537580:CDS 35.0%
!! TATACCTGCTGATTTGTTCA+GGG - chr4_1:16267488-16267507 Msa0537580:CDS 35.0%
AATGAGTGCAAGAGTTTCAA+GGG + chr4_1:16268138-16268157 None:intergenic 35.0%
AAATGAGTGCAAGAGTTTCA+AGG + chr4_1:16268139-16268158 None:intergenic 35.0%
ACTAATGAAGTGCAGAATCA+GGG + chr4_1:16268429-16268448 None:intergenic 35.0%
TCAGAGACTTCAATACATTG+AGG - chr4_1:16268743-16268762 Msa0537580:intron 35.0%
CAGAGACTTCAATACATTGA+GGG - chr4_1:16268744-16268763 Msa0537580:intron 35.0%
AGAGACTTCAATACATTGAG+GGG - chr4_1:16268745-16268764 Msa0537580:intron 35.0%
TATACATTCAGGGACCAAAA+TGG - chr4_1:16268785-16268804 Msa0537580:intron 35.0%
AATCAGTTAGGGATGTGATT+TGG - chr4_1:16268847-16268866 Msa0537580:intron 35.0%
!! TCTAGCACTTGTTTTCCTAT+TGG - chr4_1:16269043-16269062 Msa0537580:intron 35.0%
AGCCTGTATCAGATTATTAC+TGG - chr4_1:16269361-16269380 Msa0537580:intron 35.0%
!! AGAGTAGAATGGACTAGAAT+CGG - chr4_1:16269468-16269487 Msa0537580:intron 35.0%
GGTTGGAATTACATTTGGTT+AGG - chr4_1:16269544-16269563 Msa0537580:intron 35.0%
! GGTCCTAGATTTTCAAAAAC+AGG - chr4_1:16269777-16269796 Msa0537580:intron 35.0%
!! GAATTGGTAATGGAATAGAG+TGG + chr4_1:16269825-16269844 None:intergenic 35.0%
AAACCAAACACCAATCCAAA+AGG - chr4_1:16269941-16269960 Msa0537580:intron 35.0%
!!! TTACCTTTTGGATTGGTGTT+TGG + chr4_1:16269947-16269966 None:intergenic 35.0%
!!! GTTTTCTGGCTTGTTTTTCA+TGG + chr4_1:16269988-16270007 None:intergenic 35.0%
GCCAGAAAACTGTTACAATT+TGG - chr4_1:16269998-16270017 Msa0537580:intron 35.0%
TTGACGAAGCAACATATTCT+TGG - chr4_1:16270133-16270152 Msa0537580:intron 35.0%
GAATTGGAAATCGGTGAATT+GGG + chr4_1:16270175-16270194 None:intergenic 35.0%
TGAATTGGAAATCGGTGAAT+TGG + chr4_1:16270176-16270195 None:intergenic 35.0%
TCATTCAACCCTTGCATATT+AGG - chr4_1:16270362-16270381 Msa0537580:intron 35.0%
CATATTAGGTTCTATGTTCC+TGG - chr4_1:16270376-16270395 Msa0537580:intron 35.0%
ACATACTACACAACAACACA+TGG + chr4_1:16270410-16270429 None:intergenic 35.0%
GTGTGCTTATTAGTGATGTT+AGG - chr4_1:16270449-16270468 Msa0537580:intron 35.0%
TGCTTATTAGTGATGTTAGG+TGG - chr4_1:16270452-16270471 Msa0537580:intron 35.0%
! AACATAGTCCGTTCTTTTAC+TGG - chr4_1:16270825-16270844 Msa0537580:intron 35.0%
!! GCAAACATAAAAAGTGCTCT+GGG - chr4_1:16271099-16271118 Msa0537580:intron 35.0%
!! AAGTACTTTGAGACTGTTTG+AGG + chr4_1:16271303-16271322 None:intergenic 35.0%
AGATGAGATAAGAACCTCTA+TGG + chr4_1:16271469-16271488 None:intergenic 35.0%
! GGTTCTTATCTCATCTTTTG+TGG - chr4_1:16271473-16271492 Msa0537580:intron 35.0%
! TTACTCCTATGATGGAACTT+AGG - chr4_1:16271671-16271690 Msa0537580:intron 35.0%
! TACTCCTATGATGGAACTTA+GGG - chr4_1:16271672-16271691 Msa0537580:intron 35.0%
! TTTTCCCTAAGTTCCATCAT+AGG + chr4_1:16271679-16271698 None:intergenic 35.0%
TATCTCAACTCTAACTTCAG+AGG - chr4_1:16271893-16271912 Msa0537580:intron 35.0%
ATTGTATCCTTCAATGCTGT+CGG - chr4_1:16272013-16272032 Msa0537580:intron 35.0%
GCACAGTTCATATACCTAAT+TGG - chr4_1:16272050-16272069 Msa0537580:intron 35.0%
AACACGCTTAAAACTCTTTC+AGG - chr4_1:16272514-16272533 Msa0537580:intron 35.0%
ACACGCTTAAAACTCTTTCA+GGG - chr4_1:16272515-16272534 Msa0537580:intron 35.0%
CCTTAGAGACCATTGTAAAA+TGG + chr4_1:16272688-16272707 None:intergenic 35.0%
! CCATTTTACAATGGTCTCTA+AGG - chr4_1:16272685-16272704 Msa0537580:intron 35.0%
ACTTTGATCTCGTAACCTAA+AGG + chr4_1:16272727-16272746 None:intergenic 35.0%
TTTCATTGGCACTTCAAAAC+AGG + chr4_1:16272840-16272859 None:intergenic 35.0%
CCTTGTAGTTCAAGATTCTT+GGG + chr4_1:16272965-16272984 None:intergenic 35.0%
TCCTTGTAGTTCAAGATTCT+TGG + chr4_1:16272966-16272985 None:intergenic 35.0%
CTACAAGGAAAACTTAGAAG+TGG - chr4_1:16272977-16272996 Msa0537580:intron 35.0%
!! ACACAATGATTTGGTGTGTT+TGG - chr4_1:16273146-16273165 Msa0537580:intron 35.0%
GGTTAAATGCCGAAATTGTT+AGG - chr4_1:16273290-16273309 Msa0537580:intron 35.0%
TATAAACTCACACACACAAG+TGG + chr4_1:16273332-16273351 None:intergenic 35.0%
!!! TTTTTGGTTGGTAGACGAAA+TGG + chr4_1:16273364-16273383 None:intergenic 35.0%
! AAAAAATGGTAGGTACTGCT+AGG - chr4_1:16273387-16273406 Msa0537580:intron 35.0%
! AAAAATGGTAGGTACTGCTA+GGG - chr4_1:16273388-16273407 Msa0537580:intron 35.0%
!! TGCAGGTTTTTGTTTGTGGA+TGG - chr4_1:16266903-16266922 Msa0537580:three_prime_UTR 40.0%
!! GCAGGTTTTTGTTTGTGGAT+GGG - chr4_1:16266904-16266923 Msa0537580:three_prime_UTR 40.0%
! GTAGCTGTTTGTTTGGAACA+AGG - chr4_1:16267076-16267095 Msa0537580:three_prime_UTR 40.0%
!! TGTTTGGAACAAGGTGGTTT+TGG - chr4_1:16267085-16267104 Msa0537580:three_prime_UTR 40.0%
! TTGGTTACCGTTGAGGATTT+TGG - chr4_1:16267104-16267123 Msa0537580:three_prime_UTR 40.0%
TCTCACACCAAAATCCTCAA+CGG + chr4_1:16267114-16267133 None:intergenic 40.0%
TCATCGATGTGAGTTTCTGT+CGG - chr4_1:16267152-16267171 Msa0537580:three_prime_UTR 40.0%
!! TATGTTCAGAGCTTTGTTGG+TGG - chr4_1:16267212-16267231 Msa0537580:three_prime_UTR 40.0%
CCTTGGTTTCAAAGTCGTAA+GGG - chr4_1:16267247-16267266 Msa0537580:three_prime_UTR 40.0%
!!! TGGTTTGGTTGTCAACGTTT+TGG - chr4_1:16267270-16267289 Msa0537580:three_prime_UTR 40.0%
! AGGGATTTTAGATTGGCGTA+TGG + chr4_1:16267556-16267575 None:intergenic 40.0%
AGCGTCAGTCGGATAAAAAA+GGG + chr4_1:16267575-16267594 None:intergenic 40.0%
AAGAAAGATGCAGATTGGAG+AGG - chr4_1:16268267-16268286 Msa0537580:intron 40.0%
!! CTTCACTTTTCGCCCTTTAA+CGG - chr4_1:16268349-16268368 Msa0537580:intron 40.0%
GACTAATGAAGTGCAGAATC+AGG + chr4_1:16268430-16268449 None:intergenic 40.0%
TCGAACCTAACACCTTAACA+AGG + chr4_1:16268522-16268541 None:intergenic 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr4_1:16268555-16268574 None:intergenic 40.0%
AATACATTGAGGGGCTATTG+TGG - chr4_1:16268754-16268773 Msa0537580:intron 40.0%
TGGCTACTCGTTATACATTC+AGG - chr4_1:16268774-16268793 Msa0537580:intron 40.0%
GGCTACTCGTTATACATTCA+GGG - chr4_1:16268775-16268794 Msa0537580:intron 40.0%
! CAACAGGGTAATAGCCATTT+TGG + chr4_1:16268802-16268821 None:intergenic 40.0%
! TGTGTCCCACCATTTTATGT+GGG - chr4_1:16269078-16269097 Msa0537580:intron 40.0%
GAAATGGGTCCCACATAAAA+TGG + chr4_1:16269090-16269109 None:intergenic 40.0%
TCACGATATTCCGCTAAATC+TGG - chr4_1:16269263-16269282 Msa0537580:intron 40.0%
CGGCAAAAATCCAGATTTAG+CGG + chr4_1:16269276-16269295 None:intergenic 40.0%
! CGCTAAATCTGGATTTTTGC+CGG - chr4_1:16269274-16269293 Msa0537580:intron 40.0%
CCCTAGTTAAAATGGTCAAC+CGG + chr4_1:16269296-16269315 None:intergenic 40.0%
!!! CCGGTTGACCATTTTAACTA+GGG - chr4_1:16269293-16269312 Msa0537580:intron 40.0%
CTAGGGAACATACATTGTGA+TGG - chr4_1:16269310-16269329 Msa0537580:intron 40.0%
TGAAGCGCAAACATAGAACA+GGG + chr4_1:16269408-16269427 None:intergenic 40.0%
ATGAAGCGCAAACATAGAAC+AGG + chr4_1:16269409-16269428 None:intergenic 40.0%
TCATAGCTGGCTGATATGTT+TGG - chr4_1:16269425-16269444 Msa0537580:intron 40.0%
AGACACGCAGTCATATTTAG+CGG + chr4_1:16270060-16270079 None:intergenic 40.0%
TCATCAACAACTAAACGTGC+TGG - chr4_1:16270088-16270107 Msa0537580:intron 40.0%
!! ATTGTGTCGATTCCTAACAC+AGG - chr4_1:16270321-16270340 Msa0537580:intron 40.0%
CAACACATGGTATCATTTCC+AGG + chr4_1:16270397-16270416 None:intergenic 40.0%
!!! CTTTAGGTTTTGAAACTGCG+AGG - chr4_1:16270599-16270618 Msa0537580:intron 40.0%
CTTCTGCGATGTTCATTATC+CGG + chr4_1:16270640-16270659 None:intergenic 40.0%
AATGAACATCGCAGAAGAAG+AGG - chr4_1:16270643-16270662 Msa0537580:intron 40.0%
! TCCAAAGTCTTGTGATGGAA+AGG - chr4_1:16270788-16270807 Msa0537580:intron 40.0%
TCCTTTCCATCACAAGACTT+TGG + chr4_1:16270792-16270811 None:intergenic 40.0%
! TAGTCCGTTCTTTTACTGGA+AGG - chr4_1:16270829-16270848 Msa0537580:intron 40.0%
CAAGCCTTCCAGTAAAAGAA+CGG + chr4_1:16270836-16270855 None:intergenic 40.0%
!! CGCAAACATAAAAAGTGCTC+TGG - chr4_1:16271098-16271117 Msa0537580:intron 40.0%
!! GTTGTTTTCATGAGCTATCC+TGG - chr4_1:16271226-16271245 Msa0537580:intron 40.0%
CTTATTTCCATGAGCATTCC+AGG + chr4_1:16271247-16271266 None:intergenic 40.0%
TGATGGAACTTAGGGAAAAC+TGG - chr4_1:16271680-16271699 Msa0537580:intron 40.0%
! GACCGACTTAAAAACACAAC+TGG - chr4_1:16271717-16271736 Msa0537580:intron 40.0%
TTCTCGCACTTAATAGAGGT+TGG - chr4_1:16271824-16271843 Msa0537580:intron 40.0%
TCAACTCTAACTTCAGAGGT+TGG - chr4_1:16271897-16271916 Msa0537580:intron 40.0%
TGCAGAAATTGAAACCTGCA+TGG - chr4_1:16272175-16272194 Msa0537580:CDS 40.0%
ACTAGTGATCACTGATGAGA+GGG + chr4_1:16272356-16272375 None:intergenic 40.0%
! TCATCAGTGATCACTAGTCT+CGG - chr4_1:16272358-16272377 Msa0537580:intron 40.0%
!! ACTCGATAGTGTCGATAGAA+TGG + chr4_1:16272402-16272421 None:intergenic 40.0%
CACGCTTAAAACTCTTTCAG+GGG - chr4_1:16272516-16272535 Msa0537580:intron 40.0%
AGGTTACGAGATCAAAGTCT+TGG - chr4_1:16272729-16272748 Msa0537580:intron 40.0%
GAGAGATATTTCTCCACATC+AGG - chr4_1:16272917-16272936 Msa0537580:intron 40.0%
! TTCAGTTTTCTGACCTGATG+TGG + chr4_1:16272933-16272952 None:intergenic 40.0%
CCCAAGAATCTTGAACTACA+AGG - chr4_1:16272962-16272981 Msa0537580:intron 40.0%
GTTTGGAAGTTGCGAGAAAA+TGG - chr4_1:16273099-16273118 Msa0537580:intron 40.0%
AAATGCCGAAATTGTTAGGC+CGG - chr4_1:16273294-16273313 Msa0537580:intron 40.0%
AGGATTGTGTTCATTGACAC+TGG + chr4_1:16273479-16273498 None:intergenic 40.0%
TCAATGAACACAATCCTGCA+AGG - chr4_1:16273482-16273501 Msa0537580:intron 40.0%
TGTCAACAAAAGATCCTTGC+AGG + chr4_1:16273499-16273518 None:intergenic 40.0%
ATCCAAAGGAACGATGACAG+AGG + chr4_1:16267055-16267074 None:intergenic 45.0%
! GCTGTTTGTTTGGAACAAGG+TGG - chr4_1:16267079-16267098 Msa0537580:three_prime_UTR 45.0%
!! TTTGTTGGTGGCTGCATATC+TGG - chr4_1:16267224-16267243 Msa0537580:three_prime_UTR 45.0%
GCCTTGGTTTCAAAGTCGTA+AGG - chr4_1:16267246-16267265 Msa0537580:three_prime_UTR 45.0%
!! CCCTTACGACTTTGAAACCA+AGG + chr4_1:16267250-16267269 None:intergenic 45.0%
TGGTTTCAAAGTCGTAAGGG+TGG - chr4_1:16267250-16267269 Msa0537580:three_prime_UTR 45.0%
TCAAAGTCGTAAGGGTGGTT+TGG - chr4_1:16267255-16267274 Msa0537580:three_prime_UTR 45.0%
!! CGTTTTTGAGAAACCGGTTG+TGG - chr4_1:16267315-16267334 Msa0537580:three_prime_UTR 45.0%
!! TTTTGAGAAACCGGTTGTGG+TGG - chr4_1:16267318-16267337 Msa0537580:three_prime_UTR 45.0%
GACTGCAACAGACAAGAAGA+CGG + chr4_1:16267428-16267447 None:intergenic 45.0%
GAGCGTCAGTCGGATAAAAA+AGG + chr4_1:16267576-16267595 None:intergenic 45.0%
GGAGGAAGAAAGATGCAGAT+TGG - chr4_1:16268262-16268281 Msa0537580:intron 45.0%
AAAGATGCAGATTGGAGAGG+AGG - chr4_1:16268270-16268289 Msa0537580:intron 45.0%
!! TTCTCTCTTGGTGTCGACTT+AGG - chr4_1:16268293-16268312 Msa0537580:intron 45.0%
!! TCTTGGTGTCGACTTAGGAA+TGG - chr4_1:16268298-16268317 Msa0537580:intron 45.0%
AATAACCCGCCTAGTGGTAT+TGG - chr4_1:16268475-16268494 Msa0537580:CDS 45.0%
! TTAACAAGGAGCACACTCTC+AGG + chr4_1:16268508-16268527 None:intergenic 45.0%
! TGAGAGTGTGCTCCTTGTTA+AGG - chr4_1:16268507-16268526 Msa0537580:CDS 45.0%
! GTGCTCCTTGTTAAGGTGTT+AGG - chr4_1:16268514-16268533 Msa0537580:intron 45.0%
! ACAAGTGCTAGAGAGAGTGT+TGG + chr4_1:16269035-16269054 None:intergenic 45.0%
! GTGTGTCCCACCATTTTATG+TGG - chr4_1:16269077-16269096 Msa0537580:intron 45.0%
TGGGTCCCACATAAAATGGT+GGG + chr4_1:16269086-16269105 None:intergenic 45.0%
ATGGGTCCCACATAAAATGG+TGG + chr4_1:16269087-16269106 None:intergenic 45.0%
TGGGACCCATTTCAAAAGTG+CGG - chr4_1:16269097-16269116 Msa0537580:intron 45.0%
!!! AGGTCCCGCACTTTTGAAAT+GGG + chr4_1:16269105-16269124 None:intergenic 45.0%
!! TAGGTCCCGCACTTTTGAAA+TGG + chr4_1:16269106-16269125 None:intergenic 45.0%
!!! GCCGGTTGACCATTTTAACT+AGG - chr4_1:16269292-16269311 Msa0537580:intron 45.0%
! TTTCGCGAGTTTTTCCTTCG+CGG - chr4_1:16269333-16269352 Msa0537580:intron 45.0%
CTATGTTTGCGCTTCATAGC+TGG - chr4_1:16269412-16269431 Msa0537580:intron 45.0%
GCTGGCTGATATGTTTGGAT+TGG - chr4_1:16269430-16269449 Msa0537580:intron 45.0%
! TGGACTAGAATCGGCTAGTT+AGG - chr4_1:16269477-16269496 Msa0537580:intron 45.0%
! GGACTAGAATCGGCTAGTTA+GGG - chr4_1:16269478-16269497 Msa0537580:intron 45.0%
!! CTGTTACAATTTGGTGCAGC+AGG - chr4_1:16270007-16270026 Msa0537580:intron 45.0%
TAGCGATTCTGACCTGTGTT+AGG + chr4_1:16270336-16270355 None:intergenic 45.0%
! GGACTTCCAAAGTCTTGTGA+TGG - chr4_1:16270783-16270802 Msa0537580:intron 45.0%
! GACATAGAGCATCTCCATAG+AGG - chr4_1:16271452-16271471 Msa0537580:intron 45.0%
ACAAGAACCATCCTTACACC+TGG - chr4_1:16271635-16271654 Msa0537580:intron 45.0%
GATGCTCTTTCGTTACCGAA+AGG - chr4_1:16271742-16271761 Msa0537580:intron 45.0%
CATGTCGACCATTCGATCTA+TGG + chr4_1:16271963-16271982 None:intergenic 45.0%
!!! TCCTTCAATGCTGTCGGTTT+TGG - chr4_1:16272019-16272038 Msa0537580:intron 45.0%
! TCCAAAACCGACAGCATTGA+AGG + chr4_1:16272023-16272042 None:intergenic 45.0%
!!! GCTGTCGGTTTTGGATGAAA+TGG - chr4_1:16272028-16272047 Msa0537580:intron 45.0%
GACTAGTGATCACTGATGAG+AGG + chr4_1:16272357-16272376 None:intergenic 45.0%
! GGCATCTTGTTTCTTCTGCT+GGG + chr4_1:16272553-16272572 None:intergenic 45.0%
! AGGCATCTTGTTTCTTCTGC+TGG + chr4_1:16272554-16272573 None:intergenic 45.0%
TACACTTACCATGGCAGCAT+AGG + chr4_1:16272574-16272593 None:intergenic 45.0%
TCTAGAAGTCCTAGCTCAAC+TGG - chr4_1:16273269-16273288 Msa0537580:intron 45.0%
GGCATTTAACCAGTTGAGCT+AGG + chr4_1:16273281-16273300 None:intergenic 45.0%
AAACTCACACACACAAGTGG+AGG + chr4_1:16273329-16273348 None:intergenic 45.0%
! GATGGTGGCTCTCTGTTAGA+CGG - chr4_1:16266978-16266997 Msa0537580:three_prime_UTR 50.0%
CAAAGGAACGATGACAGAGG+AGG + chr4_1:16267052-16267071 None:intergenic 50.0%
CTCCTCTGTCATCGTTCCTT+TGG - chr4_1:16267050-16267069 Msa0537580:three_prime_UTR 50.0%
!!! GGTGGTTTTGGTTACCGTTG+AGG - chr4_1:16267097-16267116 Msa0537580:three_prime_UTR 50.0%
CAAAGGAACACCACCACAAC+CGG + chr4_1:16267331-16267350 None:intergenic 50.0%
CATCAGGTCAGCCTTCACTT+CGG - chr4_1:16267400-16267419 Msa0537580:exon 50.0%
! AGAAGACGGTACCGAAGTGA+AGG + chr4_1:16267414-16267433 None:intergenic 50.0%
CTTGTCTGTTGCAGTCGTTG+TGG - chr4_1:16267432-16267451 Msa0537580:CDS 50.0%
TACGCCCTGAACAAATCAGC+AGG + chr4_1:16267495-16267514 None:intergenic 50.0%
!! TGATTTGTTCAGGGCGTAGC+TGG - chr4_1:16267497-16267516 Msa0537580:CDS 50.0%
AAGAGTTTCAAGGGTGGCAC+TGG + chr4_1:16268129-16268148 None:intergenic 50.0%
GAGTGCAAGAGTTTCAAGGG+TGG + chr4_1:16268135-16268154 None:intergenic 50.0%
AACTTCCTCCAAACGCGCTT+CGG - chr4_1:16268241-16268260 Msa0537580:intron 50.0%
TTGGAGAGGAGGTTCTCTCT+TGG - chr4_1:16268281-16268300 Msa0537580:intron 50.0%
GACTTAGGAATGGCTCGTAC+TGG - chr4_1:16268308-16268327 Msa0537580:intron 50.0%
ACTGGCATTGCTCTCAGCAA+AGG - chr4_1:16268326-16268345 Msa0537580:intron 50.0%
TCTCTCAATAACCCGCCTAG+TGG - chr4_1:16268469-16268488 Msa0537580:intron 50.0%
CCAAACCAATACCACTAGGC+GGG + chr4_1:16268483-16268502 None:intergenic 50.0%
CCCAAACCAATACCACTAGG+CGG + chr4_1:16268484-16268503 None:intergenic 50.0%
!! CCGCCTAGTGGTATTGGTTT+GGG - chr4_1:16268481-16268500 Msa0537580:CDS 50.0%
GGTCCCAAACCAATACCACT+AGG + chr4_1:16268487-16268506 None:intergenic 50.0%
TCGATTCTCCCGTGCCAATT+TGG - chr4_1:16268538-16268557 Msa0537580:intron 50.0%
CGATTCTCCCGTGCCAATTT+GGG - chr4_1:16268539-16268558 Msa0537580:intron 50.0%
TTAGCCCACCCAAATTGGCA+CGG + chr4_1:16268550-16268569 None:intergenic 50.0%
! GGGACCCATTTCAAAAGTGC+GGG - chr4_1:16269098-16269117 Msa0537580:intron 50.0%
ATACAGGCTATTCACCGCGA+AGG + chr4_1:16269350-16269369 None:intergenic 50.0%
ACTGCGAGGACAGAAACTTG+AGG - chr4_1:16270613-16270632 Msa0537580:intron 50.0%
GAGGACAGAAACTTGAGGTC+CGG - chr4_1:16270618-16270637 Msa0537580:intron 50.0%
ACATCGCAGAAGAAGAGGTC+TGG - chr4_1:16270648-16270667 Msa0537580:intron 50.0%
TTGCTAATCGAGCTGCTGAG+AGG - chr4_1:16270853-16270872 Msa0537580:intron 50.0%
GAGCTATCCTGGAATGCTCA+TGG - chr4_1:16271237-16271256 Msa0537580:intron 50.0%
GCGCAAGCTTACTCCTATGA+TGG - chr4_1:16271663-16271682 Msa0537580:intron 50.0%
ATCAGCCGCCATAGATCGAA+TGG - chr4_1:16271952-16271971 Msa0537580:intron 50.0%
GTCGACCATTCGATCTATGG+CGG + chr4_1:16271960-16271979 None:intergenic 50.0%
GTGATCACTGATGAGAGGGT+TGG + chr4_1:16272352-16272371 None:intergenic 50.0%
! TCAGTGATCACTAGTCTCGG+AGG - chr4_1:16272361-16272380 Msa0537580:intron 50.0%
ACTCTTTCAGGGGCTTGAGT+AGG - chr4_1:16272526-16272545 Msa0537580:intron 50.0%
ACAAGATGCCTATGCTGCCA+TGG - chr4_1:16272563-16272582 Msa0537580:intron 50.0%
! GGCACTGAGTTGACATCTCA+TGG - chr4_1:16272750-16272769 Msa0537580:intron 50.0%
! ACACACACAAGTGGAGGTAC+CGG + chr4_1:16273323-16273342 None:intergenic 50.0%
TCAGGTCTGCTGAGATCTGC+AGG - chr4_1:16267369-16267388 Msa0537580:three_prime_UTR 55.0%
TCTGCAGGTCTCGATGCATC+AGG - chr4_1:16267384-16267403 Msa0537580:three_prime_UTR 55.0%
GCAGTCGTTGTGGTTGCTCT+TGG - chr4_1:16267442-16267461 Msa0537580:CDS 55.0%
CGTGGATCTTGTTACCGTGC+TGG - chr4_1:16267522-16267541 Msa0537580:intron 55.0%
GGATCTTGTTACCGTGCTGG+CGG - chr4_1:16267525-16267544 Msa0537580:intron 55.0%
!! GATGACGAGAGAGCGTCAGT+CGG + chr4_1:16267586-16267605 None:intergenic 55.0%
AGCTCGTACGTGAGTTCGCT+GGG - chr4_1:16267626-16267645 Msa0537580:intron 55.0%
TTCTTCCTCCGAAGCGCGTT+TGG + chr4_1:16268252-16268271 None:intergenic 55.0%
!! CCCGCCTAGTGGTATTGGTT+TGG - chr4_1:16268480-16268499 Msa0537580:CDS 55.0%
TTCTCCCGTGCCAATTTGGG+TGG - chr4_1:16268542-16268561 Msa0537580:intron 55.0%
TCTCCCGTGCCAATTTGGGT+GGG - chr4_1:16268543-16268562 Msa0537580:intron 55.0%
TAGCCCACCCAAATTGGCAC+GGG + chr4_1:16268549-16268568 None:intergenic 55.0%
!! CAATTTGGTGCAGCAGGCTC+TGG - chr4_1:16270013-16270032 Msa0537580:intron 55.0%
! AAAGTGCTCTGGGCTCTGTC+TGG - chr4_1:16271109-16271128 Msa0537580:intron 55.0%
GCAGATGCCAGGTGTAAGGA+TGG + chr4_1:16271645-16271664 None:intergenic 55.0%
TTGCGCAGATGCCAGGTGTA+AGG + chr4_1:16271649-16271668 None:intergenic 55.0%
AGTAAGCTTGCGCAGATGCC+AGG + chr4_1:16271656-16271675 None:intergenic 55.0%
GGGGTCCGGCCTAACAATTT+CGG + chr4_1:16273302-16273321 None:intergenic 55.0%
GAAATTGTTAGGCCGGACCC+CGG - chr4_1:16273301-16273320 Msa0537580:intron 55.0%
!! ACACACAAGTGGAGGTACCG+GGG + chr4_1:16273321-16273340 None:intergenic 55.0%
!! CACACACAAGTGGAGGTACC+GGG + chr4_1:16273322-16273341 None:intergenic 55.0%
CTTCTCGGTTGCCGTTGTGC+CGG - chr4_1:16266944-16266963 Msa0537580:three_prime_UTR 60.0%
GTCGAAACCCACCGGCACAA+CGG + chr4_1:16266958-16266977 None:intergenic 60.0%
CCACCATCGTCGAAACCCAC+CGG + chr4_1:16266966-16266985 None:intergenic 60.0%
GGTGGCTGCATATCTGGCCT+TGG - chr4_1:16267230-16267249 Msa0537580:three_prime_UTR 60.0%
TTCAGGGCGTAGCTGGAACG+TGG - chr4_1:16267504-16267523 Msa0537580:CDS 60.0%
GTATGGATCGACCGCCAGCA+CGG + chr4_1:16267539-16267558 None:intergenic 60.0%
GAGCTCGTACGTGAGTTCGC+TGG - chr4_1:16267625-16267644 Msa0537580:intron 60.0%
TTCCTCCAAACGCGCTTCGG+AGG - chr4_1:16268244-16268263 Msa0537580:intron 60.0%
TTCCTCCGAAGCGCGTTTGG+AGG + chr4_1:16268249-16268268 None:intergenic 60.0%
CGGCACAACGGCAACCGAGA+AGG + chr4_1:16266946-16266965 None:intergenic 65.0%
! TCGGTTGCCGTTGTGCCGGT+GGG - chr4_1:16266948-16266967 Msa0537580:three_prime_UTR 65.0%
! GTGCCGGTGGGTTTCGACGA+TGG - chr4_1:16266960-16266979 Msa0537580:three_prime_UTR 65.0%
! CCGGTGGGTTTCGACGATGG+TGG - chr4_1:16266963-16266982 Msa0537580:three_prime_UTR 65.0%
!! CAAGTGGAGGTACCGGGGTC+CGG + chr4_1:16273316-16273335 None:intergenic 65.0%
CTCGGTTGCCGTTGTGCCGG+TGG - chr4_1:16266947-16266966 Msa0537580:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 16266902 16273542 16266902 ID=Msa0537580;Name=Msa0537580
chr4_1 mRNA 16266902 16273542 16266902 ID=Msa0537580-mRNA-1;Parent=Msa0537580;Name=Msa0537580-mRNA-1;_AED=0.23;_eAED=0.24;_QI=0|0.4|0.5|0.83|0.4|0.5|6|503|187
chr4_1 exon 16266902 16267536 16266902 ID=Msa0537580-mRNA-1:exon:4858;Parent=Msa0537580-mRNA-1
chr4_1 exon 16268471 16268531 16268471 ID=Msa0537580-mRNA-1:exon:4857;Parent=Msa0537580-mRNA-1
chr4_1 exon 16269570 16269682 16269570 ID=Msa0537580-mRNA-1:exon:4856;Parent=Msa0537580-mRNA-1
chr4_1 exon 16269780 16269839 16269780 ID=Msa0537580-mRNA-1:exon:4855;Parent=Msa0537580-mRNA-1
chr4_1 exon 16272142 16272333 16272142 ID=Msa0537580-mRNA-1:exon:4854;Parent=Msa0537580-mRNA-1
chr4_1 exon 16273537 16273542 16273537 ID=Msa0537580-mRNA-1:exon:4853;Parent=Msa0537580-mRNA-1
chr4_1 CDS 16273537 16273542 16273537 ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1 CDS 16272142 16272333 16272142 ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1 CDS 16269780 16269839 16269780 ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1 CDS 16269570 16269682 16269570 ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1 CDS 16268471 16268531 16268471 ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1 CDS 16267405 16267536 16267405 ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1 three_prime_UTR 16266902 16267404 16266902 ID=Msa0537580-mRNA-1:three_prime_utr;Parent=Msa0537580-mRNA-1
Gene Sequence

>Msa0537580

ATGCAGCAGCAGCTTGTACAACCAGTGCCACCCTTGAAACTCTTGCACTCATTTCAACCTTCAAATCATGCAAAAATTCAATCTTTATCAAAATTAAATTCGACCCACAATCTAAAAACAGCATTAACTTTGGAAGAACTTCCTCCAAACGCGCTTCGGAGGAAGAAAGATGCAGATTGGAGAGGAGGTTCTCTCTTGGTTTTGAAACTGCGAGGACAGAAACTTGAGGTCCGGATAATGAACATCGCAGAAGAAGAGGAAGCTGATGAGTTTATAATTGGACTTCCAAAGTCTTGTGATGGAAAGGAAACGATACAGTCAAACATAGTCCGTTCTTTTACTGGAAGGCTTGCTAATCGAGCTGCTGAGAGAGGTTGGAGAGTATATCTACACGATGAATATGGGACGACATCAGCCGCCATAGATCGAATGATGTTACTTGAGAGATATTTCTCCACATCAGGTCAGAAAACTGAACTTGTTGTGCCCAAGAATCTTGAACTACAAGGAAAACTTAGAAGTGGTCCTCCCAAAGATGATGATTATTTCTCAGACGAAGATTAA
Protein sequence

>Msa0537580

MQQQLVQPVPPLKLLHSFQPSNHAKIQSLSKLNSTHNLKTALTLEELPPNALRRKKDADWRGGSLLVLKLRGQKLEVRIMNIAEEEEADEFIIGLPKSCDGKETIQSNIVRSFTGRLANRAAERGWRVYLHDEYGTTSAAIDRMMLLERYFSTSGQKTELVVPKNLELQGKLRSGPPKDDDYFSDED*