AlfalfaGEDB | Msa0537580

M. sativa cultivar zhongmu-4 / Msa0537580

KEGG: K07447
GO: -
PFAM: PF03652.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537580	XP_013455140.1	75.439	228	14	2	2	187	4	231	6.12e-113	331

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537580	A0A072UJ99	75.439	228	14	2	2	187	4	231	2.92e-113	331

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa0537580	0.811228	7.775979e-51	-8.615850e-47
Msa0014920	Msa0537580	0.804947	1.691432e-49	-8.615850e-47
Msa0017940	Msa0537580	0.804892	1.736776e-49	-8.615850e-47
Msa0028060	Msa0537580	0.821169	4.657731e-53	-8.615850e-47
Msa0030730	Msa0537580	0.803352	3.631711e-49	-8.615850e-47
Msa0032120	Msa0537580	0.810599	1.064098e-50	-8.615850e-47
Msa0032400	Msa0537580	0.801697	7.965795e-49	-8.615850e-47
Msa0032840	Msa0537580	-0.823240	1.540933e-53	-8.615850e-47
Msa0048020	Msa0537580	0.825413	4.751934e-54	-8.615850e-47
Msa0063580	Msa0537580	0.802327	5.911983e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537580	MtrunA17_Chr4g0012671	75.439	228	14	2	2	187	4	231	5.63e-117	331
Msa0537580	MtrunA17_Chr2g0312491	74.886	219	12	3	2	178	4	221	2.39e-108	309
Msa0537580	MtrunA17_Chr2g0312501	93.548	62	4	0	2	63	4	65	2.03e-36	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537580	AT1G12244.1	51.913	183	45	2	43	182	61	243	1.16e-45	151

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Find 61 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACACACACAAGTGG+AGG	0.652693	4_1:+16267096	None:intergenic
AAAGATGCAGATTGGAGAGG+AGG	0.565847	4_1:-16272152	Msa0537580:CDS
AAATAATCATCATCTTTGGG+AGG	0.679374	4_1:+16267421	None:intergenic
AAATGAGTGCAAGAGTTTCA+AGG	0.491961	4_1:+16272286	None:intergenic
AAATGCCGAAATTGTTAGGC+CGG	0.521609	4_1:-16267128	Msa0537580:three_prime_UTR
AAATTAGAAAACACGAATGA+TGG	0.464328	4_1:+16267355	None:intergenic
AACTTCAAATTAAGGATGTG+TGG	0.527731	4_1:-16267240	Msa0537580:three_prime_UTR
AACTTCCTCCAAACGCGCTT+CGG	0.404160	4_1:-16272181	Msa0537580:CDS
AAGAAAGATGCAGATTGGAG+AGG	0.610227	4_1:-16272155	Msa0537580:CDS
AAGAGTTTCAAGGGTGGCAC+TGG	0.486520	4_1:+16272296	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATCAGAGAATCAAGCAA+AGG	+	chr4_1:16267348-16267367	None:intergenic	30.0%
ATCAATTTCTCTCTCTAATG+TGG	-	chr4_1:16268082-16268101	Msa0537580:intron	30.0%
TTACAACCGTGTTTACAAAA+TGG	+	chr4_1:16268895-16268914	None:intergenic	30.0%
TAAACACGGTTGTAAAATGT+AGG	-	chr4_1:16268900-16268919	Msa0537580:intron	30.0%
TCTAATTCCACTCTCTTATT+AGG	+	chr4_1:16269140-16269159	None:intergenic	30.0%
TGTATGTTCCCTAGTTAAAA+TGG	+	chr4_1:16269304-16269323	None:intergenic	30.0%
AACCAGTAATAATCTGATAC+AGG	+	chr4_1:16269366-16269385	None:intergenic	30.0%
TAGATGGTTGGAATTACATT+TGG	-	chr4_1:16269539-16269558	Msa0537580:intron	30.0%
TAATTGTGATAGAGAGAAGA+TGG	-	chr4_1:16269579-16269598	Msa0537580:CDS	30.0%
AGAAGATGGAAGCTAATTAA+AGG	-	chr4_1:16269593-16269612	Msa0537580:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	16266902	16273542	16266902	ID=Msa0537580;Name=Msa0537580
chr4_1	mRNA	16266902	16273542	16266902	ID=Msa0537580-mRNA-1;Parent=Msa0537580;Name=Msa0537580-mRNA-1;_AED=0.23;_eAED=0.24;_QI=0\|0.4\|0.5\|0.83\|0.4\|0.5\|6\|503\|187
chr4_1	exon	16266902	16267536	16266902	ID=Msa0537580-mRNA-1:exon:4858;Parent=Msa0537580-mRNA-1
chr4_1	exon	16268471	16268531	16268471	ID=Msa0537580-mRNA-1:exon:4857;Parent=Msa0537580-mRNA-1
chr4_1	exon	16269570	16269682	16269570	ID=Msa0537580-mRNA-1:exon:4856;Parent=Msa0537580-mRNA-1
chr4_1	exon	16269780	16269839	16269780	ID=Msa0537580-mRNA-1:exon:4855;Parent=Msa0537580-mRNA-1
chr4_1	exon	16272142	16272333	16272142	ID=Msa0537580-mRNA-1:exon:4854;Parent=Msa0537580-mRNA-1
chr4_1	exon	16273537	16273542	16273537	ID=Msa0537580-mRNA-1:exon:4853;Parent=Msa0537580-mRNA-1
chr4_1	CDS	16273537	16273542	16273537	ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1	CDS	16272142	16272333	16272142	ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1	CDS	16269780	16269839	16269780	ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1	CDS	16269570	16269682	16269570	ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1	CDS	16268471	16268531	16268471	ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1	CDS	16267405	16267536	16267405	ID=Msa0537580-mRNA-1:cds;Parent=Msa0537580-mRNA-1
chr4_1	three_prime_UTR	16266902	16267404	16266902	ID=Msa0537580-mRNA-1:three_prime_utr;Parent=Msa0537580-mRNA-1

Gene Sequence

>Msa0537580

ATGCAGCAGCAGCTTGTACAACCAGTGCCACCCTTGAAACTCTTGCACTCATTTCAACCTTCAAATCATGCAAAAATTCAATCTTTATCAAAATTAAATTCGACCCACAATCTAAAAACAGCATTAACTTTGGAAGAACTTCCTCCAAACGCGCTTCGGAGGAAGAAAGATGCAGATTGGAGAGGAGGTTCTCTCTTGGTTTTGAAACTGCGAGGACAGAAACTTGAGGTCCGGATAATGAACATCGCAGAAGAAGAGGAAGCTGATGAGTTTATAATTGGACTTCCAAAGTCTTGTGATGGAAAGGAAACGATACAGTCAAACATAGTCCGTTCTTTTACTGGAAGGCTTGCTAATCGAGCTGCTGAGAGAGGTTGGAGAGTATATCTACACGATGAATATGGGACGACATCAGCCGCCATAGATCGAATGATGTTACTTGAGAGATATTTCTCCACATCAGGTCAGAAAACTGAACTTGTTGTGCCCAAGAATCTTGAACTACAAGGAAAACTTAGAAGTGGTCCTCCCAAAGATGATGATTATTTCTCAGACGAAGATTAA

Protein sequence

>Msa0537580

MQQQLVQPVPPLKLLHSFQPSNHAKIQSLSKLNSTHNLKTALTLEELPPNALRRKKDADWRGGSLLVLKLRGQKLEVRIMNIAEEEEADEFIIGLPKSCDGKETIQSNIVRSFTGRLANRAAERGWRVYLHDEYGTTSAAIDRMMLLERYFSTSGQKTELVVPKNLELQGKLRSGPPKDDDYFSDED*