AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0590680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0590680 MtrunA17_Chr4g0008441 94.231 468 15 2 1 462 1 462 0.0 892
Msa0590680 MtrunA17_Chr5g0419371 44.020 393 190 5 78 457 185 560 8.22e-113 344
Msa0590680 MtrunA17_Chr2g0329451 33.696 368 195 6 86 452 7 326 2.44e-55 187
Msa0590680 MtrunA17_Chr5g0434971 33.889 360 192 5 92 451 66 379 2.83e-53 183
Msa0590680 MtrunA17_Chr4g0033631 32.880 368 198 7 86 452 8 327 1.12e-51 177
Msa0590680 MtrunA17_Chr1g0188291 32.410 361 197 5 92 452 7 320 3.42e-51 176
Msa0590680 MtrunA17_Chr1g0204101 31.436 369 208 6 81 449 11 334 1.68e-48 169
Msa0590680 MtrunA17_Chr6g0474331 31.608 367 205 7 93 458 28 349 2.33e-48 169
Msa0590680 MtrunA17_Chr1g0171921 30.159 315 187 5 135 446 206 490 1.81e-33 132
Msa0590680 MtrunA17_Chr1g0183661 27.385 325 191 9 131 454 12 292 3.14e-28 113
Msa0590680 MtrunA17_Chr1g0183241 28.763 299 181 5 151 449 134 400 2.25e-27 113
Msa0590680 MtrunA17_Chr1g0177771 27.885 312 185 5 135 446 276 547 1.11e-26 112
Msa0590680 MtrunA17_Chr1g0177321 28.205 312 175 6 135 446 202 464 1.52e-24 105
Msa0590680 MtrunA17_Chr7g0246421 30.594 219 120 3 232 449 2 189 1.05e-22 95.5
Msa0590680 MtrunA17_Chr7g0246411 31.507 146 85 3 92 236 40 171 2.00e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0590680 AT3G54090.1 68.577 471 128 5 10 462 3 471 0.0 679
Msa0590680 AT1G69200.1 44.044 361 189 3 84 444 197 544 3.18e-104 323
Msa0590680 AT3G59480.1 33.609 363 188 5 93 452 10 322 6.17e-56 189
Msa0590680 AT2G31390.1 32.249 369 197 5 90 455 6 324 1.01e-55 188
Msa0590680 AT1G06030.1 34.417 369 194 7 89 456 7 328 3.12e-54 184
Msa0590680 AT1G06020.1 33.516 364 194 6 93 455 10 326 5.69e-54 184
Msa0590680 AT1G66430.1 31.221 426 223 9 27 450 19 376 1.04e-53 185
Msa0590680 AT4G10260.1 32.410 361 197 5 92 452 5 318 4.05e-48 168
Msa0590680 AT5G51830.2 31.868 364 203 6 89 452 19 337 6.13e-48 168
Msa0590680 AT5G51830.1 31.868 364 203 6 89 452 19 337 6.13e-48 168

Find 149 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGTCTTCAAACATTTC+TGG 0.137316 4_2:-14230015 None:intergenic
TATACAGAACTTGTTTAATT+TGG 0.166729 4_2:+14230323 Msa0590680:three_prime_UTR
TTCCATTCTGTGTATATATC+TGG 0.195178 4_2:-14227228 None:intergenic
ATCCAAACCAGGTAATAAAA+TGG 0.214183 4_2:-14226776 None:intergenic
TTTATTTATATATCCTTTCT+AGG 0.215014 4_2:+14230254 Msa0590680:three_prime_UTR
GTTTGGGGAGGAGATGGTTT+TGG 0.244152 4_2:+14227374 Msa0590680:CDS
CGGCTTTGTTGGGGAAAGTT+GGG 0.250094 4_2:+14227343 Msa0590680:CDS
CGGCGGACGGGCGGCTTTGT+TGG 0.262729 4_2:+14227332 Msa0590680:CDS
GGCGGACGGGCGGCTTTGTT+GGG 0.265409 4_2:+14227333 Msa0590680:CDS
GTAATACTCTTGACGATTCT+TGG 0.268512 4_2:-14229779 None:intergenic
GTTTGAAGACCAAGATGTTT+TGG 0.272200 4_2:+14230023 Msa0590680:CDS
CACAAGGCCGCCAAACTTCT+TGG 0.273975 4_2:-14229563 None:intergenic
AAAGTTGGGGAAGATGAGTT+TGG 0.286600 4_2:+14227357 Msa0590680:CDS
GTTTCTGTTGTGGAAGCTTT+AGG 0.294571 4_2:-14227000 None:intergenic
AGAGGGGTGAAGTTTGATTC+AGG 0.299944 4_2:+14227423 Msa0590680:CDS
AACAGAGTTGATTCCATAGA+AGG 0.303709 4_2:-14229523 None:intergenic
CCGGAGTTCGCGCGAGCGCC+AGG 0.321958 4_2:+14227270 Msa0590680:CDS
AGTTCTAACATCCCCTTCTA+TGG 0.340037 4_2:+14229510 Msa0590680:CDS
TGGACTATTGGTGGAGTTAG+AGG 0.347631 4_2:+14230090 Msa0590680:CDS
AAATTGTACATCTATGTTCT+TGG 0.349614 4_2:+14230569 Msa0590680:three_prime_UTR
GCGGCTTTGTTGGGGAAAGT+TGG 0.356462 4_2:+14227342 Msa0590680:CDS
TGAAGTTTGATTCAGGGTTT+CGG 0.357886 4_2:+14227430 Msa0590680:CDS
TTTGCTACTTTCAAGTTTGA+AGG 0.360448 4_2:-14226719 None:intergenic
TTAGAACTTCTGAATTGAAA+TGG 0.361898 4_2:-14229495 None:intergenic
CCATGTGAGGCTCGGCGGAC+GGG 0.363565 4_2:+14227320 Msa0590680:CDS
AAGTTGGGGAAGATGAGTTT+GGG 0.364967 4_2:+14227358 Msa0590680:CDS
CTAAAGCAGAACACACAATA+AGG 0.368034 4_2:-14230487 None:intergenic
CCACCGTTAGTATGTTGTTT+CGG 0.375127 4_2:+14227150 Msa0590680:CDS
AGTGATAGTTTCATCTCAAA+TGG 0.376822 4_2:+14230277 Msa0590680:three_prime_UTR
CCAGTTCTATCGCAAGTATA+AGG 0.379857 4_2:-14229943 None:intergenic
ATTATATCGCAATGGACTAT+TGG 0.392117 4_2:+14230078 Msa0590680:CDS
CTTGGTTTGTTCGTAATCTT+CGG 0.392437 4_2:-14229761 None:intergenic
CCCGTCCGCCGAGCCTCACA+TGG 0.404861 4_2:-14227320 None:intergenic
ACAAATGCTATGGAGTTGTT+GGG 0.407713 4_2:-14226817 None:intergenic
CTGAGGAAATCTCGCCTTTG+TGG 0.410749 4_2:+14229812 Msa0590680:CDS
CAGATTCTGAGTAGCACTTT+CGG 0.411608 4_2:-14230121 None:intergenic
AACAAATGCTATGGAGTTGT+TGG 0.421225 4_2:-14226818 None:intergenic
AGATGAGTTTGGGGAGGAGA+TGG 0.422134 4_2:+14227368 Msa0590680:CDS
ATAAAGTGGTCCAAGAAGTT+TGG 0.422946 4_2:+14229553 Msa0590680:CDS
AGTCCATTGCGATATAATTC+CGG 0.424032 4_2:-14230073 None:intergenic
GATGGGGATGGAGATTGTTA+AGG 0.430969 4_2:+14227497 Msa0590680:CDS
GGAGAAGATTATGTTGATGA+AGG 0.432668 4_2:-14226894 None:intergenic
GGCTTTGTTGGGGAAAGTTG+GGG 0.436289 4_2:+14227344 Msa0590680:CDS
TCTCCCTACGGTGCGTGTGC+AGG 0.439194 4_2:+14227191 Msa0590680:CDS
CCCATGTGAGGCTCGGCGGA+CGG 0.445264 4_2:+14227319 Msa0590680:CDS
GAGTTCGCGCGAGCGCCAGG+TGG 0.447733 4_2:+14227273 Msa0590680:CDS
TCCAAACCAGGTAATAAAAT+GGG 0.457837 4_2:-14226775 None:intergenic
ACATTCGACGGTGGCCCACC+TGG 0.459108 4_2:-14227288 None:intergenic
TTGATTCAGGGTTTCGGACG+GGG 0.459581 4_2:+14227436 Msa0590680:CDS
CGTAATGTTCTTCGTCTAGC+AGG 0.460726 4_2:-14229705 None:intergenic
CGTGATCTCCACAGAGGTAA+TGG 0.461462 4_2:-14229604 None:intergenic
TGTGTATATATCTGGGTCCA+TGG 0.465474 4_2:-14227220 None:intergenic
TCCATTCTGTGTATATATCT+GGG 0.467221 4_2:-14227227 None:intergenic
CCTTATACTTGCGATAGAAC+TGG 0.478733 4_2:+14229943 Msa0590680:CDS
TTGTTCCATCGGTCACAAAC+AGG 0.479482 4_2:-14229852 None:intergenic
TGGCTCTGGTGATGCTATTG+TGG 0.484324 4_2:+14229963 Msa0590680:CDS
CCTGGCGCTCGCGCGAACTC+CGG 0.484739 4_2:-14227270 None:intergenic
GAGGGGTGAAGTTTGATTCA+GGG 0.485557 4_2:+14227424 Msa0590680:CDS
ATTGCATGTTTACATTGTGC+TGG 0.488180 4_2:+14230544 Msa0590680:three_prime_UTR
TAATCTTCGGCGTAGTATTG+TGG 0.488189 4_2:-14229748 None:intergenic
ACTAACGGTGGGTCATCGTA+TGG 0.490169 4_2:-14227138 None:intergenic
ATTATGTTGATGAAGGATTG+AGG 0.491725 4_2:-14226887 None:intergenic
ACCACAACCCCGTCAAAAGA+AGG 0.492807 4_2:-14229895 None:intergenic
TTTGATGATGATGGGAAGAT+GGG 0.499638 4_2:+14227480 Msa0590680:CDS
ATCTCGCCTTTGTGGCATGA+TGG 0.501857 4_2:+14229820 Msa0590680:CDS
GAGAGTGAAAGAGAGGAAGA+AGG 0.503303 4_2:-14226915 None:intergenic
GTTTGATGATGATGGGAAGA+TGG 0.503712 4_2:+14227479 Msa0590680:CDS
TTGGGATTGTGTTTCTGTTG+TGG 0.509020 4_2:-14227010 None:intergenic
CTACGTTTCGCTATTGCAGC+CGG 0.509386 4_2:+14230054 Msa0590680:CDS
TATGGGTTTGGATTAATGGA+AGG 0.510517 4_2:-14226854 None:intergenic
AAGTTCCTGTTTGTGACCGA+TGG 0.511223 4_2:+14229847 Msa0590680:CDS
GCGGACGGGCGGCTTTGTTG+GGG 0.513698 4_2:+14227334 Msa0590680:CDS
GCCACCGTCGAATGTGGCGG+TGG 0.514160 4_2:+14227296 Msa0590680:CDS
ATCATAAGAAACAAATGCTA+TGG 0.514653 4_2:-14226827 None:intergenic
AGGAGAAGGTGCAGACTAGA+GGG 0.514816 4_2:+14227406 Msa0590680:CDS
GTCTAGCAGGAATTCTAGCT+CGG 0.515350 4_2:-14229692 None:intergenic
TGAAACTATCACTCCTAGAA+AGG 0.522345 4_2:-14230267 None:intergenic
ATGGGTTTGGATTAATGGAA+GGG 0.522357 4_2:-14226853 None:intergenic
AATGTGCTGAGGATTCTCTT+AGG 0.525056 4_2:+14227520 Msa0590680:CDS
GTGATAGTTTCATCTCAAAT+GGG 0.525924 4_2:+14230278 Msa0590680:three_prime_UTR
TTTGATTCAGGGTTTCGGAC+GGG 0.526969 4_2:+14227435 Msa0590680:CDS
CTACTTTCAAGTTTGAAGGA+TGG 0.527893 4_2:-14226715 None:intergenic
CTCTGTTCAAAGCAATAAAG+TGG 0.530790 4_2:+14229539 Msa0590680:CDS
GGCGCTCGCGCGAACTCCGG+CGG 0.534032 4_2:-14227267 None:intergenic
GTGAATTCTAATTGTTCCAT+CGG 0.536542 4_2:-14229863 None:intergenic
TAGCATGTATTGTTTGCAGA+GGG 0.537515 4_2:-14230520 None:intergenic
GCTGTCTCTCCAAAACATCT+TGG 0.538601 4_2:-14230032 None:intergenic
GCGGTGGCCCATGTGAGGCT+CGG 0.538838 4_2:+14227312 Msa0590680:CDS
TTCAAACATTTCTGGACAAG+TGG 0.540890 4_2:-14230007 None:intergenic
AGATTTCCTCAGCAGTGTAA+TGG 0.542861 4_2:-14229801 None:intergenic
GTTTGATTCAGGGTTTCGGA+CGG 0.542942 4_2:+14227434 Msa0590680:CDS
CCACAACCCCGTCAAAAGAA+GGG 0.547437 4_2:-14229894 None:intergenic
AGGTGGGCCACCGTCGAATG+TGG 0.554311 4_2:+14227290 Msa0590680:CDS
ACCCAGATATATACACAGAA+TGG 0.556834 4_2:+14227226 Msa0590680:CDS
AAGGTGAAGTTTGATGATGA+TGG 0.557714 4_2:+14227471 Msa0590680:CDS
ACAGAGTTGATTCCATAGAA+GGG 0.559311 4_2:-14229522 None:intergenic
ATATCGCAATGGACTATTGG+TGG 0.560224 4_2:+14230081 Msa0590680:CDS
GCGTGTGCAGGAGTTTCCCA+TGG 0.560604 4_2:+14227203 Msa0590680:CDS
CAAATGCTATGGAGTTGTTG+GGG 0.561015 4_2:-14226816 None:intergenic
TTGTTTCGGAGCAGCACAGA+GGG 0.563579 4_2:+14227164 Msa0590680:CDS
AGTTCGCGCGAGCGCCAGGT+GGG 0.566606 4_2:+14227274 Msa0590680:CDS
GACGGGGTGTAGTTATATGA+AGG 0.567980 4_2:+14227452 Msa0590680:CDS
AAGTGGTCCAAGAAGTTTGG+CGG 0.570685 4_2:+14229556 Msa0590680:CDS
TGGGCCACCGCCACATTCGA+CGG 0.573108 4_2:-14227300 None:intergenic
GTGTATATATCTGGGTCCAT+GGG 0.573279 4_2:-14227219 None:intergenic
AACTCCTGCACACGCACCGT+AGG 0.573419 4_2:-14227195 None:intergenic
TGTGAGGCTCGGCGGACGGG+CGG 0.573896 4_2:+14227323 Msa0590680:CDS
TGATGATGGGAAGATGGGGA+TGG 0.574654 4_2:+14227485 Msa0590680:CDS
AGGTGAAGTTTGATGATGAT+GGG 0.578660 4_2:+14227472 Msa0590680:CDS
TGTGTCAATTCAAAACTTTG+TGG 0.579990 4_2:+14230391 Msa0590680:three_prime_UTR
ACTTGCGATAGAACTGGCTC+TGG 0.580431 4_2:+14229949 Msa0590680:CDS
TGGGGAAGATGAGTTTGGGG+AGG 0.581376 4_2:+14227362 Msa0590680:CDS
CTAACGGTGGGTCATCGTAT+GGG 0.581904 4_2:-14227137 None:intergenic
AAGGAGAAGGTGCAGACTAG+AGG 0.583488 4_2:+14227405 Msa0590680:CDS
AATTGTATGTTATCCAAACC+AGG 0.586578 4_2:-14226787 None:intergenic
TTTGGGGATGAATAAGGAGA+AGG 0.593535 4_2:+14227392 Msa0590680:CDS
ACTCCTGCACACGCACCGTA+GGG 0.604979 4_2:-14227194 None:intergenic
GAATTTGAAGATTACGACGA+TGG 0.606685 4_2:+14227105 Msa0590680:CDS
ATGTGGCGGTGGCCCATGTG+AGG 0.610484 4_2:+14227307 Msa0590680:CDS
CACAACCCCGTCAAAAGAAG+GGG 0.611346 4_2:-14229893 None:intergenic
TGGGCCACCGTCGAATGTGG+CGG 0.611823 4_2:+14227293 Msa0590680:CDS
CAGAGTTGATTCCATAGAAG+GGG 0.614146 4_2:-14229521 None:intergenic
GATGTTACAATGGAAGCCGC+CGG 0.615125 4_2:+14227251 Msa0590680:CDS
ACAGAGGGAGTTTCTCCCTA+CGG 0.617069 4_2:+14227179 Msa0590680:CDS
TCATCTCAAATGGGAGCAAG+CGG 0.621022 4_2:+14230287 Msa0590680:three_prime_UTR
CCGTCCGCCGAGCCTCACAT+GGG 0.624669 4_2:-14227319 None:intergenic
CTAGCATGTATTGTTTGCAG+AGG 0.626284 4_2:-14230521 None:intergenic
CAGCCGGAATTATATCGCAA+TGG 0.626399 4_2:+14230070 Msa0590680:CDS
GCTCCGAAACAACATACTAA+CGG 0.632899 4_2:-14227153 None:intergenic
CGAAACAACATACTAACGGT+GGG 0.640061 4_2:-14227149 None:intergenic
CAGAATGGAAGATGTTACAA+TGG 0.641345 4_2:+14227241 Msa0590680:CDS
GTATTACCATTACACTGCTG+AGG 0.642064 4_2:+14229795 Msa0590680:CDS
TTCTGAGTAGCACTTTCGGT+AGG 0.642730 4_2:-14230117 None:intergenic
CCGAAACAACATACTAACGG+TGG 0.643534 4_2:-14227150 None:intergenic
TAAACTTGCCATTACCTCTG+TGG 0.648518 4_2:+14229596 Msa0590680:CDS
AGTTGGGGAAGATGAGTTTG+GGG 0.660506 4_2:+14227359 Msa0590680:CDS
GCCACCGCCACATTCGACGG+TGG 0.668024 4_2:-14227297 None:intergenic
GTGGCCCATGTGAGGCTCGG+CGG 0.668346 4_2:+14227315 Msa0590680:CDS
TTGATGATGATGGGAAGATG+GGG 0.672300 4_2:+14227481 Msa0590680:CDS
AGCATGTATTGTTTGCAGAG+GGG 0.673131 4_2:-14230519 None:intergenic
GGAGAAGGTGCAGACTAGAG+GGG 0.677795 4_2:+14227407 Msa0590680:CDS
TTAAGTCCATCATGCCACAA+AGG 0.677817 4_2:-14229826 None:intergenic
GATTGTTAAGGAATGTGCTG+AGG 0.682184 4_2:+14227509 Msa0590680:CDS
ATGTTGATGAAGGATTGAGG+AGG 0.683914 4_2:-14226884 None:intergenic
GTTTGATTTAGAAAGAAGTG+AGG 0.689761 4_2:-14226947 None:intergenic
AAGTTTATGTACCTTCAATG+TGG 0.696809 4_2:+14230151 Msa0590680:CDS
TAGACGAAGAACATTACGAG+AGG 0.725488 4_2:+14229710 Msa0590680:CDS
GTTGTTTCGGAGCAGCACAG+AGG 0.736871 4_2:+14227163 Msa0590680:CDS
TCATCGCGTGATCTCCACAG+AGG 0.761083 4_2:-14229610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAACAACTATAAG+TGG - chr4_2:14227627-14227646 None:intergenic 15.0%
!!! TCTCATTTGATTTAATTTTT+AGG + chr4_2:14228217-14228236 Msa0590680:intron 15.0%
!! ATAAGCTTATATATCATATA+AGG - chr4_2:14228244-14228263 None:intergenic 15.0%
!! TTATTATTCATAATGAGATT+CGG + chr4_2:14228329-14228348 Msa0590680:intron 15.0%
!! TTTATTTATATATCCTTTCT+AGG + chr4_2:14230254-14230273 Msa0590680:three_prime_UTR 15.0%
!! TTCCCTTCAAAAAAAAAAAT+GGG - chr4_2:14226750-14226769 None:intergenic 20.0%
!! TTTCCCTTCAAAAAAAAAAA+TGG - chr4_2:14226751-14226770 None:intergenic 20.0%
!! CTTATACCATCATAAAATTT+AGG - chr4_2:14227773-14227792 None:intergenic 20.0%
!!! TTAGGCTTTACAATATTTTA+CGG + chr4_2:14227971-14227990 Msa0590680:intron 20.0%
!!! TAATCAAAACTTTTTCTGTT+AGG + chr4_2:14228694-14228713 Msa0590680:intron 20.0%
!!! TTTCAATGTTTTTACTTTGA+AGG + chr4_2:14228884-14228903 Msa0590680:intron 20.0%
!!! AAAATAGCTTTAACATTAGA+TGG - chr4_2:14228942-14228961 None:intergenic 20.0%
!!! CAATAAAATCAATTTTTGGA+TGG - chr4_2:14229279-14229298 None:intergenic 20.0%
!!! GTGTCAATAAAATCAATTTT+TGG - chr4_2:14229283-14229302 None:intergenic 20.0%
!! GAGAAATAATAAAAAAAGCA+TGG + chr4_2:14229638-14229657 Msa0590680:CDS 20.0%
!!! TATACAGAACTTGTTTAATT+TGG + chr4_2:14230323-14230342 Msa0590680:three_prime_UTR 20.0%
!!! ACACCCATTTTTTTTTTTGA+AGG + chr4_2:14226744-14226763 Msa0590680:five_prime_UTR 25.0%
!!! CACCCATTTTTTTTTTTGAA+GGG + chr4_2:14226745-14226764 Msa0590680:five_prime_UTR 25.0%
! ATCATAAGAAACAAATGCTA+TGG - chr4_2:14226830-14226849 None:intergenic 25.0%
!! TTTTTATGGGTTTGGATTAA+TGG - chr4_2:14226861-14226880 None:intergenic 25.0%
! TACCATCATAAAATTTAGGT+TGG - chr4_2:14227769-14227788 None:intergenic 25.0%
! TCGTAAAATGTGTTTATAAG+TGG + chr4_2:14227907-14227926 Msa0590680:intron 25.0%
! CGTAAAATGTGTTTATAAGT+GGG + chr4_2:14227908-14227927 Msa0590680:intron 25.0%
!!! TAGTGTATCTATTTTTGACA+CGG + chr4_2:14228051-14228070 Msa0590680:intron 25.0%
! TATACTGACATTGGTAAAAA+TGG + chr4_2:14228724-14228743 Msa0590680:intron 25.0%
! TCAGTTAAAATTGTGTTTGA+AGG + chr4_2:14228852-14228871 Msa0590680:intron 25.0%
!! TGATATTTTATGACGTCAAA+TGG + chr4_2:14229116-14229135 Msa0590680:intron 25.0%
!!! TACTAGTTTGTTAATGTATG+AGG + chr4_2:14229400-14229419 Msa0590680:intron 25.0%
! TTAGAACTTCTGAATTGAAA+TGG - chr4_2:14229498-14229517 None:intergenic 25.0%
!! AATAATAAAAAAAGCATGGC+AGG + chr4_2:14229642-14229661 Msa0590680:CDS 25.0%
!! AATTTTTATCACCACATTGA+AGG - chr4_2:14230165-14230184 None:intergenic 25.0%
!!! TTATGTACCCTATTTTTGTA+TGG + chr4_2:14230430-14230449 Msa0590680:three_prime_UTR 25.0%
!!! TATGTACCCTATTTTTGTAT+GGG + chr4_2:14230431-14230450 Msa0590680:three_prime_UTR 25.0%
!! TTTGCTACTTTCAAGTTTGA+AGG - chr4_2:14226722-14226741 None:intergenic 30.0%
TCCAAACCAGGTAATAAAAT+GGG - chr4_2:14226778-14226797 None:intergenic 30.0%
ATCCAAACCAGGTAATAAAA+TGG - chr4_2:14226779-14226798 None:intergenic 30.0%
AATTGTATGTTATCCAAACC+AGG - chr4_2:14226790-14226809 None:intergenic 30.0%
! ATTGAGGAGGACATTTTTAT+GGG - chr4_2:14226874-14226893 None:intergenic 30.0%
! ATTATGTTGATGAAGGATTG+AGG - chr4_2:14226890-14226909 None:intergenic 30.0%
! GTTTGATTTAGAAAGAAGTG+AGG - chr4_2:14226950-14226969 None:intergenic 30.0%
! AGTTGTTATGTTTCGTTTTG+AGG - chr4_2:14226980-14226999 None:intergenic 30.0%
!!! TTTTTTGTTGCGTCGTTTTA+TGG - chr4_2:14227037-14227056 None:intergenic 30.0%
!!! TTCTTTTGTTGTGTCGTTTT+GGG - chr4_2:14227070-14227089 None:intergenic 30.0%
TCCATTCTGTGTATATATCT+GGG - chr4_2:14227230-14227249 None:intergenic 30.0%
TTCCATTCTGTGTATATATC+TGG - chr4_2:14227231-14227250 None:intergenic 30.0%
!!! GAATCTTTCTGTTTTGAAAG+AGG + chr4_2:14227554-14227573 Msa0590680:CDS 30.0%
!!! GTCGTAAAATTGGTTTTGTA+GGG + chr4_2:14227732-14227751 Msa0590680:intron 30.0%
! GTCCAACCTAAATTTTATGA+TGG + chr4_2:14227764-14227783 Msa0590680:intron 30.0%
AGCAGTTCATTAGAATGAAA+CGG - chr4_2:14228132-14228151 None:intergenic 30.0%
! ATGAGATTCGGTTAATGAAT+TGG + chr4_2:14228341-14228360 Msa0590680:intron 30.0%
CGGTTAATGAATTGGAAAAT+TGG + chr4_2:14228349-14228368 Msa0590680:intron 30.0%
! TCATGCTTTGTTAATGTATG+AGG + chr4_2:14228426-14228445 Msa0590680:intron 30.0%
TTGTTAATGTATGAGGAAGA+TGG + chr4_2:14228433-14228452 Msa0590680:intron 30.0%
TCAGTTAAAGTCAAGTTTGA+AGG + chr4_2:14228525-14228544 Msa0590680:intron 30.0%
CAGTTAAAGTCAAGTTTGAA+GGG + chr4_2:14228526-14228545 Msa0590680:intron 30.0%
GAAGCAAATTTATGTGTGAA+AGG + chr4_2:14228671-14228690 Msa0590680:intron 30.0%
!! GTGAAAGTTTGTTAATGCAA+GGG + chr4_2:14228746-14228765 Msa0590680:intron 30.0%
! AGATGGTTTTTCCTTTGTTA+AGG + chr4_2:14228771-14228790 Msa0590680:intron 30.0%
TCAAACATTCTCCTTAACAA+AGG - chr4_2:14228785-14228804 None:intergenic 30.0%
!!! GAGGAATTTTTTTGTGTGAA+AGG + chr4_2:14228990-14229009 Msa0590680:intron 30.0%
CTTTGCAGAATACTAATGTT+TGG - chr4_2:14229019-14229038 None:intergenic 30.0%
AAAGATCATGTATTCACTTG+AGG + chr4_2:14229035-14229054 Msa0590680:intron 30.0%
GATTCTGATACATTACATTG+TGG + chr4_2:14229065-14229084 Msa0590680:intron 30.0%
ACTTATCTTGCAAACCATAT+CGG - chr4_2:14229160-14229179 None:intergenic 30.0%
! ATATGGTTTGCAAGATAAGT+TGG + chr4_2:14229160-14229179 Msa0590680:intron 30.0%
!!! TATTGACACTTTTGAAACCA+AGG + chr4_2:14229294-14229313 Msa0590680:intron 30.0%
!!! CATTTTGGGGTCAAAATATT+TGG + chr4_2:14229323-14229342 Msa0590680:intron 30.0%
AGTTTAAGTCGAAAAACACA+AGG - chr4_2:14229582-14229601 None:intergenic 30.0%
GTGAATTCTAATTGTTCCAT+CGG - chr4_2:14229866-14229885 None:intergenic 30.0%
!! ATTATATCGCAATGGACTAT+TGG + chr4_2:14230078-14230097 Msa0590680:CDS 30.0%
AAGTTTATGTACCTTCAATG+TGG + chr4_2:14230151-14230170 Msa0590680:CDS 30.0%
AGTGATAGTTTCATCTCAAA+TGG + chr4_2:14230277-14230296 Msa0590680:three_prime_UTR 30.0%
GTGATAGTTTCATCTCAAAT+GGG + chr4_2:14230278-14230297 Msa0590680:three_prime_UTR 30.0%
!!! TTGTTTTTGGTGACATGAAA+TGG - chr4_2:14230351-14230370 None:intergenic 30.0%
!! TACTCTTCAGAAGTTGTTTT+TGG - chr4_2:14230364-14230383 None:intergenic 30.0%
TGTGTCAATTCAAAACTTTG+TGG + chr4_2:14230391-14230410 Msa0590680:three_prime_UTR 30.0%
!!! ATGTACCCTATTTTTGTATG+GGG + chr4_2:14230432-14230451 Msa0590680:three_prime_UTR 30.0%
ACAAACCCCATACAAAAATA+GGG - chr4_2:14230440-14230459 None:intergenic 30.0%
TACAAACCCCATACAAAAAT+AGG - chr4_2:14230441-14230460 None:intergenic 30.0%
!! CTACTTTCAAGTTTGAAGGA+TGG - chr4_2:14226718-14226737 None:intergenic 35.0%
!! AAAGCACCCATTTTATTACC+TGG + chr4_2:14226769-14226788 Msa0590680:five_prime_UTR 35.0%
! ACCCATTTTATTACCTGGTT+TGG + chr4_2:14226774-14226793 Msa0590680:five_prime_UTR 35.0%
ACAAATGCTATGGAGTTGTT+GGG - chr4_2:14226820-14226839 None:intergenic 35.0%
AACAAATGCTATGGAGTTGT+TGG - chr4_2:14226821-14226840 None:intergenic 35.0%
ATGGGTTTGGATTAATGGAA+GGG - chr4_2:14226856-14226875 None:intergenic 35.0%
TATGGGTTTGGATTAATGGA+AGG - chr4_2:14226857-14226876 None:intergenic 35.0%
! GATTGAGGAGGACATTTTTA+TGG - chr4_2:14226875-14226894 None:intergenic 35.0%
! GGAGAAGATTATGTTGATGA+AGG - chr4_2:14226897-14226916 None:intergenic 35.0%
!! GAAAGAAGTGAGGTTGTTTT+TGG - chr4_2:14226940-14226959 None:intergenic 35.0%
!!! GTTCTTTTGTTGTGTCGTTT+TGG - chr4_2:14227071-14227090 None:intergenic 35.0%
GAATTTGAAGATTACGACGA+TGG + chr4_2:14227105-14227124 Msa0590680:CDS 35.0%
ACCCAGATATATACACAGAA+TGG + chr4_2:14227226-14227245 Msa0590680:CDS 35.0%
CAGAATGGAAGATGTTACAA+TGG + chr4_2:14227241-14227260 Msa0590680:CDS 35.0%
TGAAGTTTGATTCAGGGTTT+CGG + chr4_2:14227430-14227449 Msa0590680:CDS 35.0%
!! AAGGTGAAGTTTGATGATGA+TGG + chr4_2:14227471-14227490 Msa0590680:CDS 35.0%
!! AGGTGAAGTTTGATGATGAT+GGG + chr4_2:14227472-14227491 Msa0590680:CDS 35.0%
!! TTTGATGATGATGGGAAGAT+GGG + chr4_2:14227480-14227499 Msa0590680:CDS 35.0%
! CAAAACCAATTTTACGACGA+GGG - chr4_2:14227730-14227749 None:intergenic 35.0%
! ACAAAACCAATTTTACGACG+AGG - chr4_2:14227731-14227750 None:intergenic 35.0%
!!! CGTCGTAAAATTGGTTTTGT+AGG + chr4_2:14227731-14227750 Msa0590680:intron 35.0%
!!! TGGTTTTGTAGGGTTAAGTT+AGG + chr4_2:14227742-14227761 Msa0590680:intron 35.0%
TTAGTTGAGCTATCAGCTAT+TGG + chr4_2:14227806-14227825 Msa0590680:intron 35.0%
GCAGTTCATTAGAATGAAAC+GGG - chr4_2:14228131-14228150 None:intergenic 35.0%
TGTGATTCACAATTCGTATC+TGG + chr4_2:14228375-14228394 Msa0590680:intron 35.0%
TCAAACATTCTCCCTAACAA+AGG - chr4_2:14228464-14228483 None:intergenic 35.0%
CAACACTTCTAGTCAAATTG+AGG + chr4_2:14228637-14228656 Msa0590680:intron 35.0%
!! GGTGAAAGTTTGTTAATGCA+AGG + chr4_2:14228745-14228764 Msa0590680:intron 35.0%
TTGTTAATGCAAGGGTAAGA+TGG + chr4_2:14228754-14228773 Msa0590680:intron 35.0%
CATCACTTCAAGTCAATTTG+AGG + chr4_2:14228963-14228982 Msa0590680:intron 35.0%
! GACGTCAAATGGTTTTTGTA+TGG + chr4_2:14229127-14229146 Msa0590680:intron 35.0%
TAAGTCACACATGTAGAGTT+TGG + chr4_2:14229217-14229236 Msa0590680:intron 35.0%
AAGTCACACATGTAGAGTTT+GGG + chr4_2:14229218-14229237 Msa0590680:intron 35.0%
!!! TTTTTTATGTGTACCACTGC+AGG + chr4_2:14229462-14229481 Msa0590680:intron 35.0%
! ACAGAGTTGATTCCATAGAA+GGG - chr4_2:14229525-14229544 None:intergenic 35.0%
! AACAGAGTTGATTCCATAGA+AGG - chr4_2:14229526-14229545 None:intergenic 35.0%
CTCTGTTCAAAGCAATAAAG+TGG + chr4_2:14229539-14229558 Msa0590680:CDS 35.0%
ATAAAGTGGTCCAAGAAGTT+TGG + chr4_2:14229553-14229572 Msa0590680:CDS 35.0%
!! CTTGGTTTGTTCGTAATCTT+CGG - chr4_2:14229764-14229783 None:intergenic 35.0%
GTAATACTCTTGACGATTCT+TGG - chr4_2:14229782-14229801 None:intergenic 35.0%
! TATTACACCCCTTCTTTTGA+CGG + chr4_2:14229886-14229905 Msa0590680:CDS 35.0%
! TTCAAACATTTCTGGACAAG+TGG - chr4_2:14230010-14230029 None:intergenic 35.0%
! TCTTGGTCTTCAAACATTTC+TGG - chr4_2:14230018-14230037 None:intergenic 35.0%
! GTTTGAAGACCAAGATGTTT+TGG + chr4_2:14230023-14230042 Msa0590680:CDS 35.0%
AGTCCATTGCGATATAATTC+CGG - chr4_2:14230076-14230095 None:intergenic 35.0%
TGAAACTATCACTCCTAGAA+AGG - chr4_2:14230270-14230289 None:intergenic 35.0%
CTAAAGCAGAACACACAATA+AGG - chr4_2:14230490-14230509 None:intergenic 35.0%
TAGCATGTATTGTTTGCAGA+GGG - chr4_2:14230523-14230542 None:intergenic 35.0%
ATTGCATGTTTACATTGTGC+TGG + chr4_2:14230544-14230563 Msa0590680:three_prime_UTR 35.0%
CAAATGCTATGGAGTTGTTG+GGG - chr4_2:14226819-14226838 None:intergenic 40.0%
! GGAGGACATTTTTATGGGTT+TGG - chr4_2:14226869-14226888 None:intergenic 40.0%
! ATGTTGATGAAGGATTGAGG+AGG - chr4_2:14226887-14226906 None:intergenic 40.0%
!! GTTTTTGGAGAGTGAAAGAG+AGG - chr4_2:14226925-14226944 None:intergenic 40.0%
GTTTCTGTTGTGGAAGCTTT+AGG - chr4_2:14227003-14227022 None:intergenic 40.0%
! TTGGGATTGTGTTTCTGTTG+TGG - chr4_2:14227013-14227032 None:intergenic 40.0%
!! GTTGCGTCGTTTTATGGTTT+GGG - chr4_2:14227031-14227050 None:intergenic 40.0%
!! TGTTGCGTCGTTTTATGGTT+TGG - chr4_2:14227032-14227051 None:intergenic 40.0%
CGAAACAACATACTAACGGT+GGG - chr4_2:14227152-14227171 None:intergenic 40.0%
! CCACCGTTAGTATGTTGTTT+CGG + chr4_2:14227150-14227169 Msa0590680:CDS 40.0%
GCTCCGAAACAACATACTAA+CGG - chr4_2:14227156-14227175 None:intergenic 40.0%
GTGTATATATCTGGGTCCAT+GGG - chr4_2:14227222-14227241 None:intergenic 40.0%
TGTGTATATATCTGGGTCCA+TGG - chr4_2:14227223-14227242 None:intergenic 40.0%
AAAGTTGGGGAAGATGAGTT+TGG + chr4_2:14227357-14227376 Msa0590680:CDS 40.0%
AAGTTGGGGAAGATGAGTTT+GGG + chr4_2:14227358-14227377 Msa0590680:CDS 40.0%
!!! GATGGTTTTGGGGATGAATA+AGG + chr4_2:14227386-14227405 Msa0590680:CDS 40.0%
TTTGGGGATGAATAAGGAGA+AGG + chr4_2:14227392-14227411 Msa0590680:CDS 40.0%
!! GTTTGATGATGATGGGAAGA+TGG + chr4_2:14227479-14227498 Msa0590680:CDS 40.0%
!! TTGATGATGATGGGAAGATG+GGG + chr4_2:14227481-14227500 Msa0590680:CDS 40.0%
GATTGTTAAGGAATGTGCTG+AGG + chr4_2:14227509-14227528 Msa0590680:CDS 40.0%
AATGTGCTGAGGATTCTCTT+AGG + chr4_2:14227520-14227539 Msa0590680:CDS 40.0%
GCTGATAGCTCAACTAATCA+TGG - chr4_2:14227803-14227822 None:intergenic 40.0%
AACGCTATCACAACCAAGAA+AGG - chr4_2:14227856-14227875 None:intergenic 40.0%
CTACCAACTCTGCTTGTAAA+GGG - chr4_2:14227944-14227963 None:intergenic 40.0%
!! CTTTACAAGCAGAGTTGGTA+GGG + chr4_2:14227943-14227962 Msa0590680:intron 40.0%
ATTCTGAACACAGTCGATAC+AGG + chr4_2:14228022-14228041 Msa0590680:intron 40.0%
ACTGCTACTCAAACTTAGTG+TGG + chr4_2:14228146-14228165 Msa0590680:intron 40.0%
AAGATGGTTGTGCCTTTGTT+AGG + chr4_2:14228449-14228468 Msa0590680:intron 40.0%
AGATGGTTGTGCCTTTGTTA+GGG + chr4_2:14228450-14228469 Msa0590680:intron 40.0%
GGTTAGTGCTATACTGACAT+TGG + chr4_2:14228715-14228734 Msa0590680:intron 40.0%
! CAAGTCAATTTGAGGTTCAG+AGG + chr4_2:14228971-14228990 Msa0590680:intron 40.0%
! TGTATGGATTGTGACCGATA+TGG + chr4_2:14229143-14229162 Msa0590680:intron 40.0%
! AAACCAAGGTCACTGCATTT+TGG + chr4_2:14229308-14229327 Msa0590680:intron 40.0%
! AACCAAGGTCACTGCATTTT+GGG + chr4_2:14229309-14229328 Msa0590680:intron 40.0%
! AGTTCTAACATCCCCTTCTA+TGG + chr4_2:14229510-14229529 Msa0590680:CDS 40.0%
! CAGAGTTGATTCCATAGAAG+GGG - chr4_2:14229524-14229543 None:intergenic 40.0%
TAAACTTGCCATTACCTCTG+TGG + chr4_2:14229596-14229615 Msa0590680:CDS 40.0%
TAGACGAAGAACATTACGAG+AGG + chr4_2:14229710-14229729 Msa0590680:CDS 40.0%
TAATCTTCGGCGTAGTATTG+TGG - chr4_2:14229751-14229770 None:intergenic 40.0%
GTATTACCATTACACTGCTG+AGG + chr4_2:14229795-14229814 Msa0590680:CDS 40.0%
AGATTTCCTCAGCAGTGTAA+TGG - chr4_2:14229804-14229823 None:intergenic 40.0%
TTAAGTCCATCATGCCACAA+AGG - chr4_2:14229829-14229848 None:intergenic 40.0%
! ATTACACCCCTTCTTTTGAC+GGG + chr4_2:14229887-14229906 Msa0590680:CDS 40.0%
CCAGTTCTATCGCAAGTATA+AGG - chr4_2:14229946-14229965 None:intergenic 40.0%
CCTTATACTTGCGATAGAAC+TGG + chr4_2:14229943-14229962 Msa0590680:CDS 40.0%
!! ATATCGCAATGGACTATTGG+TGG + chr4_2:14230081-14230100 Msa0590680:CDS 40.0%
CAGATTCTGAGTAGCACTTT+CGG - chr4_2:14230124-14230143 None:intergenic 40.0%
AGCATGTATTGTTTGCAGAG+GGG - chr4_2:14230522-14230541 None:intergenic 40.0%
CTAGCATGTATTGTTTGCAG+AGG - chr4_2:14230524-14230543 None:intergenic 40.0%
GAGAGTGAAAGAGAGGAAGA+AGG - chr4_2:14226918-14226937 None:intergenic 45.0%
CCGAAACAACATACTAACGG+TGG - chr4_2:14227153-14227172 None:intergenic 45.0%
AGTTGGGGAAGATGAGTTTG+GGG + chr4_2:14227359-14227378 Msa0590680:CDS 45.0%
! TTTGGGGAGGAGATGGTTTT+GGG + chr4_2:14227375-14227394 Msa0590680:CDS 45.0%
AGAGGGGTGAAGTTTGATTC+AGG + chr4_2:14227423-14227442 Msa0590680:CDS 45.0%
GAGGGGTGAAGTTTGATTCA+GGG + chr4_2:14227424-14227443 Msa0590680:CDS 45.0%
GTTTGATTCAGGGTTTCGGA+CGG + chr4_2:14227434-14227453 Msa0590680:CDS 45.0%
TTTGATTCAGGGTTTCGGAC+GGG + chr4_2:14227435-14227454 Msa0590680:CDS 45.0%
GACGGGGTGTAGTTATATGA+AGG + chr4_2:14227452-14227471 Msa0590680:CDS 45.0%
GATGGGGATGGAGATTGTTA+AGG + chr4_2:14227497-14227516 Msa0590680:CDS 45.0%
! TTTTACGACGAGGGATGCAT+CGG - chr4_2:14227721-14227740 None:intergenic 45.0%
TGCATCCCTCGTCGTAAAAT+TGG + chr4_2:14227722-14227741 Msa0590680:intron 45.0%
GCTATCAGCTATTGGTCACT+CGG + chr4_2:14227814-14227833 Msa0590680:intron 45.0%
CTATCAGCTATTGGTCACTC+GGG + chr4_2:14227815-14227834 Msa0590680:intron 45.0%
CAACTCTGCTTGTAAAGGGA+GGG - chr4_2:14227940-14227959 None:intergenic 45.0%
CCTACCAACTCTGCTTGTAA+AGG - chr4_2:14227945-14227964 None:intergenic 45.0%
! CCTTTACAAGCAGAGTTGGT+AGG + chr4_2:14227942-14227961 Msa0590680:intron 45.0%
!! AGAGTTGGTAGGGTTGAGTT+AGG + chr4_2:14227953-14227972 Msa0590680:intron 45.0%
! ACCAAGGTCACTGCATTTTG+GGG + chr4_2:14229310-14229329 Msa0590680:intron 45.0%
AAGTGGTCCAAGAAGTTTGG+CGG + chr4_2:14229556-14229575 Msa0590680:CDS 45.0%
! GTCTAGCAGGAATTCTAGCT+CGG - chr4_2:14229695-14229714 None:intergenic 45.0%
CGTAATGTTCTTCGTCTAGC+AGG - chr4_2:14229708-14229727 None:intergenic 45.0%
AAGTTCCTGTTTGTGACCGA+TGG + chr4_2:14229847-14229866 Msa0590680:CDS 45.0%
TTGTTCCATCGGTCACAAAC+AGG - chr4_2:14229855-14229874 None:intergenic 45.0%
! TTACACCCCTTCTTTTGACG+GGG + chr4_2:14229888-14229907 Msa0590680:CDS 45.0%
GCTGTCTCTCCAAAACATCT+TGG - chr4_2:14230035-14230054 None:intergenic 45.0%
CAGCCGGAATTATATCGCAA+TGG + chr4_2:14230070-14230089 Msa0590680:CDS 45.0%
TGGACTATTGGTGGAGTTAG+AGG + chr4_2:14230090-14230109 Msa0590680:CDS 45.0%
TTCTGAGTAGCACTTTCGGT+AGG - chr4_2:14230120-14230139 None:intergenic 45.0%
TCATCTCAAATGGGAGCAAG+CGG + chr4_2:14230287-14230306 Msa0590680:three_prime_UTR 45.0%
CTAACGGTGGGTCATCGTAT+GGG - chr4_2:14227140-14227159 None:intergenic 50.0%
ACTAACGGTGGGTCATCGTA+TGG - chr4_2:14227141-14227160 None:intergenic 50.0%
TTGTTTCGGAGCAGCACAGA+GGG + chr4_2:14227164-14227183 Msa0590680:CDS 50.0%
ACAGAGGGAGTTTCTCCCTA+CGG + chr4_2:14227179-14227198 Msa0590680:CDS 50.0%
GATGTTACAATGGAAGCCGC+CGG + chr4_2:14227251-14227270 Msa0590680:CDS 50.0%
!! CGGCTTTGTTGGGGAAAGTT+GGG + chr4_2:14227343-14227362 Msa0590680:CDS 50.0%
!! GGCTTTGTTGGGGAAAGTTG+GGG + chr4_2:14227344-14227363 Msa0590680:CDS 50.0%
AGATGAGTTTGGGGAGGAGA+TGG + chr4_2:14227368-14227387 Msa0590680:CDS 50.0%
! GTTTGGGGAGGAGATGGTTT+TGG + chr4_2:14227374-14227393 Msa0590680:CDS 50.0%
!! TTGGGGAGGAGATGGTTTTG+GGG + chr4_2:14227376-14227395 Msa0590680:CDS 50.0%
! AAGGAGAAGGTGCAGACTAG+AGG + chr4_2:14227405-14227424 Msa0590680:CDS 50.0%
! AGGAGAAGGTGCAGACTAGA+GGG + chr4_2:14227406-14227425 Msa0590680:CDS 50.0%
TTGATTCAGGGTTTCGGACG+GGG + chr4_2:14227436-14227455 Msa0590680:CDS 50.0%
!! TGATGATGGGAAGATGGGGA+TGG + chr4_2:14227485-14227504 Msa0590680:CDS 50.0%
CACAACCAAGAAAGGCCATC+TGG - chr4_2:14227848-14227867 None:intergenic 50.0%
CCAACTCTGCTTGTAAAGGG+AGG - chr4_2:14227941-14227960 None:intergenic 50.0%
CCTCCCTTTACAAGCAGAGT+TGG + chr4_2:14227938-14227957 Msa0590680:intron 50.0%
ACCCCAAAATGCAGTGACCT+TGG - chr4_2:14229314-14229333 None:intergenic 50.0%
TATGTGTACCACTGCAGGCT+AGG + chr4_2:14229467-14229486 Msa0590680:intron 50.0%
TGGAAAATCCTAGCCTGCAG+TGG - chr4_2:14229478-14229497 None:intergenic 50.0%
CGTGATCTCCACAGAGGTAA+TGG - chr4_2:14229607-14229626 None:intergenic 50.0%
CTGAGGAAATCTCGCCTTTG+TGG + chr4_2:14229812-14229831 Msa0590680:CDS 50.0%
ATCTCGCCTTTGTGGCATGA+TGG + chr4_2:14229820-14229839 Msa0590680:CDS 50.0%
CACAACCCCGTCAAAAGAAG+GGG - chr4_2:14229896-14229915 None:intergenic 50.0%
CCACAACCCCGTCAAAAGAA+GGG - chr4_2:14229897-14229916 None:intergenic 50.0%
ACCACAACCCCGTCAAAAGA+AGG - chr4_2:14229898-14229917 None:intergenic 50.0%
! TCTTTTGACGGGGTTGTGGT+TGG + chr4_2:14229898-14229917 Msa0590680:CDS 50.0%
! ACTTGCGATAGAACTGGCTC+TGG + chr4_2:14229949-14229968 Msa0590680:CDS 50.0%
!! TGGCTCTGGTGATGCTATTG+TGG + chr4_2:14229963-14229982 Msa0590680:CDS 50.0%
CTACGTTTCGCTATTGCAGC+CGG + chr4_2:14230054-14230073 Msa0590680:CDS 50.0%
! GTTGTTTCGGAGCAGCACAG+AGG + chr4_2:14227163-14227182 Msa0590680:CDS 55.0%
!! GCGGCTTTGTTGGGGAAAGT+TGG + chr4_2:14227342-14227361 Msa0590680:CDS 55.0%
TGGGGAAGATGAGTTTGGGG+AGG + chr4_2:14227362-14227381 Msa0590680:CDS 55.0%
! GGAGAAGGTGCAGACTAGAG+GGG + chr4_2:14227407-14227426 Msa0590680:CDS 55.0%
ACGCTCCAGATGGCCTTTCT+TGG + chr4_2:14227840-14227859 Msa0590680:intron 55.0%
CTCTGCTTGTAAAGGGAGGG+AGG - chr4_2:14227937-14227956 None:intergenic 55.0%
CACAAGGCCGCCAAACTTCT+TGG - chr4_2:14229566-14229585 None:intergenic 55.0%
TCATCGCGTGATCTCCACAG+AGG - chr4_2:14229613-14229632 None:intergenic 55.0%
! CCCTTCTTTTGACGGGGTTG+TGG + chr4_2:14229894-14229913 Msa0590680:CDS 55.0%
ACTCCTGCACACGCACCGTA+GGG - chr4_2:14227197-14227216 None:intergenic 60.0%
AACTCCTGCACACGCACCGT+AGG - chr4_2:14227198-14227217 None:intergenic 60.0%
GCGTGTGCAGGAGTTTCCCA+TGG + chr4_2:14227203-14227222 Msa0590680:CDS 60.0%
TCTCCCTACGGTGCGTGTGC+AGG + chr4_2:14227191-14227210 Msa0590680:CDS 65.0%
ACATTCGACGGTGGCCCACC+TGG - chr4_2:14227291-14227310 None:intergenic 65.0%
AGGTGGGCCACCGTCGAATG+TGG + chr4_2:14227290-14227309 Msa0590680:CDS 65.0%
TGGGCCACCGTCGAATGTGG+CGG + chr4_2:14227293-14227312 Msa0590680:CDS 65.0%
TGGGCCACCGCCACATTCGA+CGG - chr4_2:14227303-14227322 None:intergenic 65.0%
ATGTGGCGGTGGCCCATGTG+AGG + chr4_2:14227307-14227326 Msa0590680:CDS 65.0%
CACTCGGGTCACGCTCCAGA+TGG + chr4_2:14227830-14227849 Msa0590680:intron 65.0%
AGTTCGCGCGAGCGCCAGGT+GGG + chr4_2:14227274-14227293 Msa0590680:CDS 70.0%
GCCACCGTCGAATGTGGCGG+TGG + chr4_2:14227296-14227315 Msa0590680:CDS 70.0%
GCCACCGCCACATTCGACGG+TGG - chr4_2:14227300-14227319 None:intergenic 70.0%
GCGGTGGCCCATGTGAGGCT+CGG + chr4_2:14227312-14227331 Msa0590680:CDS 70.0%
GTGGCCCATGTGAGGCTCGG+CGG + chr4_2:14227315-14227334 Msa0590680:CDS 70.0%
CCGTCCGCCGAGCCTCACAT+GGG - chr4_2:14227322-14227341 None:intergenic 70.0%
CCCATGTGAGGCTCGGCGGA+CGG + chr4_2:14227319-14227338 Msa0590680:CDS 70.0%
CCATGTGAGGCTCGGCGGAC+GGG + chr4_2:14227320-14227339 Msa0590680:CDS 70.0%
!! GGCGGACGGGCGGCTTTGTT+GGG + chr4_2:14227333-14227352 Msa0590680:CDS 70.0%
!! GCGGACGGGCGGCTTTGTTG+GGG + chr4_2:14227334-14227353 Msa0590680:CDS 70.0%
CCTGGCGCTCGCGCGAACTC+CGG - chr4_2:14227273-14227292 None:intergenic 75.0%
GAGTTCGCGCGAGCGCCAGG+TGG + chr4_2:14227273-14227292 Msa0590680:CDS 75.0%
CCCGTCCGCCGAGCCTCACA+TGG - chr4_2:14227323-14227342 None:intergenic 75.0%
TGTGAGGCTCGGCGGACGGG+CGG + chr4_2:14227323-14227342 Msa0590680:CDS 75.0%
! CGGCGGACGGGCGGCTTTGT+TGG + chr4_2:14227332-14227351 Msa0590680:CDS 75.0%
! GGCGCTCGCGCGAACTCCGG+CGG - chr4_2:14227270-14227289 None:intergenic 80.0%
! CCGGAGTTCGCGCGAGCGCC+AGG + chr4_2:14227270-14227289 Msa0590680:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 14226715 14230590 14226715 ID=Msa0590680;Name=Msa0590680
chr4_2 mRNA 14226715 14230590 14226715 ID=Msa0590680-mRNA-1;Parent=Msa0590680;Name=Msa0590680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=165|1|1|1|1|1|2|414|462
chr4_2 exon 14226715 14227575 14226715 ID=Msa0590680-mRNA-1:exon:4126;Parent=Msa0590680-mRNA-1
chr4_2 exon 14229484 14230590 14229484 ID=Msa0590680-mRNA-1:exon:4127;Parent=Msa0590680-mRNA-1
chr4_2 five_prime_UTR 14226715 14226879 14226715 ID=Msa0590680-mRNA-1:five_prime_utr;Parent=Msa0590680-mRNA-1
chr4_2 CDS 14226880 14227575 14226880 ID=Msa0590680-mRNA-1:cds;Parent=Msa0590680-mRNA-1
chr4_2 CDS 14229484 14230176 14229484 ID=Msa0590680-mRNA-1:cds;Parent=Msa0590680-mRNA-1
chr4_2 three_prime_UTR 14230177 14230590 14230177 ID=Msa0590680-mRNA-1:three_prime_utr;Parent=Msa0590680-mRNA-1
Gene Sequence

>Msa0590680

ATGTCCTCCTCAATCCTTCATCAACATAATCTTCTCCTTCTTCCTCTCTTTCACTCTCCAAAAACAACCTCACTTCTTTCTAAATCAAACACAACAACCTCAAAACGAAACATAACAACTCCTAAAGCTTCCACAACAGAAACACAATCCCAAACCATAAAACGACGCAACAAAAAAAATAACACAACCCAAAACGACACAACAAAAGAACAAGAACATGAACAAGAATTTGAAGATTACGACGATGGAATTGATTTCCCATACGATGACCCACCGTTAGTATGTTGTTTCGGAGCAGCACAGAGGGAGTTTCTCCCTACGGTGCGTGTGCAGGAGTTTCCCATGGACCCAGATATATACACAGAATGGAAGATGTTACAATGGAAGCCGCCGGAGTTCGCGCGAGCGCCAGGTGGGCCACCGTCGAATGTGGCGGTGGCCCATGTGAGGCTCGGCGGACGGGCGGCTTTGTTGGGGAAAGTTGGGGAAGATGAGTTTGGGGAGGAGATGGTTTTGGGGATGAATAAGGAGAAGGTGCAGACTAGAGGGGTGAAGTTTGATTCAGGGTTTCGGACGGGGTGTAGTTATATGAAGGTGAAGTTTGATGATGATGGGAAGATGGGGATGGAGATTGTTAAGGAATGTGCTGAGGATTCTCTTAGGAGTGATGAATTGAATCTTTCTGTTTTGAAAGAGGCTAGGATTTTCCATTTCAATTCAGAAGTTCTAACATCCCCTTCTATGGAATCAACTCTGTTCAAAGCAATAAAGTGGTCCAAGAAGTTTGGCGGCCTTGTGTTTTTCGACTTAAACTTGCCATTACCTCTGTGGAGATCACGCGATGAAACTCGAGAAATAATAAAAAAAGCATGGCAGGAAGCAGACATCATTGAAGTTTCAAGAACCGAGCTAGAATTCCTGCTAGACGAAGAACATTACGAGAGGAAGAGAAATTATAAACCACAATACTACGCCGAAGATTACGAACAAACCAAGAATCGTCAAGAGTATTACCATTACACTGCTGAGGAAATCTCGCCTTTGTGGCATGATGGACTTAAGTTCCTGTTTGTGACCGATGGAACAATTAGAATTCACTATTACACCCCTTCTTTTGACGGGGTTGTGGTTGGAACAGAAGACGTGCTCATAACTCCTTATACTTGCGATAGAACTGGCTCTGGTGATGCTATTGTGGCTGCTATTATGAGAAAACTAACCACTTGTCCAGAAATGTTTGAAGACCAAGATGTTTTGGAGAGACAGCTACGTTTCGCTATTGCAGCCGGAATTATATCGCAATGGACTATTGGTGGAGTTAGAGGTTTTCCTACCGAAAGTGCTACTCAGAATCTGAAAGAGCAAGTTTATGTACCTTCAATGTGGTGA

Protein sequence

>Msa0590680

MSSSILHQHNLLLLPLFHSPKTTSLLSKSNTTTSKRNITTPKASTTETQSQTIKRRNKKNNTTQNDTTKEQEHEQEFEDYDDGIDFPYDDPPLVCCFGAAQREFLPTVRVQEFPMDPDIYTEWKMLQWKPPEFARAPGGPPSNVAVAHVRLGGRAALLGKVGEDEFGEEMVLGMNKEKVQTRGVKFDSGFRTGCSYMKVKFDDDGKMGMEIVKECAEDSLRSDELNLSVLKEARIFHFNSEVLTSPSMESTLFKAIKWSKKFGGLVFFDLNLPLPLWRSRDETREIIKKAWQEADIIEVSRTELEFLLDEEHYERKRNYKPQYYAEDYEQTKNRQEYYHYTAEEISPLWHDGLKFLFVTDGTIRIHYYTPSFDGVVVGTEDVLITPYTCDRTGSGDAIVAAIMRKLTTCPEMFEDQDVLERQLRFAIAAGIISQWTIGGVRGFPTESATQNLKEQVYVPSMW*